BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.8
(1558 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11970 hypothetical protein 1100 0.0
At1g36590 hypothetical protein 1093 0.0
At1g35370 hypothetical protein 933 0.0
At2g10780 pseudogene 701 0.0
At2g04670 putative retroelement pol polyprotein 642 0.0
At2g14650 putative retroelement pol polyprotein 629 e-180
At2g05610 putative retroelement pol polyprotein 621 e-177
At4g10580 putative reverse-transcriptase -like protein 512 e-145
At2g06890 putative retroelement integrase 473 e-133
At3g31970 hypothetical protein 453 e-127
At4g16910 retrotransposon like protein 381 e-105
At4g07850 putative polyprotein 379 e-105
At2g07660 putative retroelement pol polyprotein 379 e-104
At1g37060 Athila retroelment ORF 1, putative 309 9e-84
At2g14640 putative retroelement pol polyprotein 290 5e-78
At4g08100 putative polyprotein 283 4e-76
At4g03650 putative reverse transcriptase 283 7e-76
At4g07830 putative reverse transcriptase 276 7e-74
At1g20390 hypothetical protein 223 5e-58
At4g04230 putative transposon protein 195 2e-49
>At3g11970 hypothetical protein
Length = 1499
Score = 1100 bits (2846), Expect = 0.0
Identities = 614/1536 (39%), Positives = 904/1536 (57%), Gaps = 85/1536 (5%)
Query: 8 MESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHNSVSTA 67
++SRV LE ++ E + +QF +L + LSR + R + R S+
Sbjct: 22 LDSRVTRLETTVAEQHKEMMKQFADLYAV-LSRSTAGKMVDEQSTLDRSAPRSSQSME-- 78
Query: 68 RTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWVTKVER 127
+R+G R A + +H++ ++L + ++D P F+G W+ KVE
Sbjct: 79 -----NRSGYPDPYRDARHQQVRSDHFNAYNNLTRLG--KIDFPRFDGTRLKEWLFKVEE 131
Query: 128 FFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA----WEPFKQALFRRFQPALL 183
FF + E K++M I + A W Q + + + W+ + + L RF+
Sbjct: 132 FFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKERFEDD-C 190
Query: 184 QNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPAD 243
+P L +++ +++Y + FEL+ + N E L V+L GL+ + + ++++
Sbjct: 191 DDPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHVRMFQPQ 249
Query: 244 DLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSMGRIANSYVNF 303
+ + E+ + PK+ W S R A +
Sbjct: 250 TVRHCLFLGKTYEKAH-------PKKPANTTW----------------STNRSAPT---- 282
Query: 304 QSKGGTGNQDNEGKS-LQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
GG EG+S + G GN +QP+K ++Q E+ +R KGLC+ C
Sbjct: 283 ---GGYNKYQKEGESKTDHYGNKGNFKPVSQQPKK-------MSQQEMSDRRSKGLCYFC 332
Query: 363 GDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSN 422
+K+ EH K QL M+V DEE E+ EE + + + + Q+S+N+ G+
Sbjct: 333 DEKYTPEHYLVHKKTQLFRMDV--DEEFEDAREELVNDD---DEHMPQISVNAVSGIAGY 387
Query: 423 RSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGV 482
++ +VKG + + ILID G+T NF+ + +L V V V +G K R G
Sbjct: 388 KTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGK 447
Query: 483 CKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVL 542
+ ++Q ++ L G ++VLG+ WL +LG I F++L +++ QK++L
Sbjct: 448 VTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLL 507
Query: 543 QG--EPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEV------------PE 588
G SV +V K+ K+ + QE + Q+ E TE E+
Sbjct: 508 HGLTSGSVREV----KAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEES 563
Query: 589 GMRKILEEYPEVFQEPKGLPP-RRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKE 647
+ ++L EYP++F EP LPP R +H I+L EG++ N RPYRY +QKNEI+KLV++
Sbjct: 564 VVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVED 623
Query: 648 MLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGA 707
+L +G ++ S+SP++SP +LVKKKDG WR CVDYR +N T+ D FPIP+I++L+DE+G
Sbjct: 624 LLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 708 AVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLR 767
AV+FSK+DL++GYHQ+RM +DI KTAF+TH GH+EYLV+PFGLTNAP+TFQ LMN + +
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFK 743
Query: 768 PYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHV 827
P+LRKFVLVFF DIL+YS + E H+ HL+ V +V++ N L A KC+F P++ YLGH
Sbjct: 744 PFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHF 803
Query: 828 ISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNS 887
IS G+ DP+KIK + +WP P +K LRGFLGL GYYRRFV+++ +A PL+ L K ++
Sbjct: 804 ISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDA 863
Query: 888 FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSK 947
F+WT A QAF LK + PVL P FDK F++ETDA G+G+GAVLMQEG P+AY+S+
Sbjct: 864 FEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISR 923
Query: 948 TLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKW 1007
L + S+YE+EL+AV+ AV+KWRHYLL S F+I TDQRSL++L +QR+ QQ+W
Sbjct: 924 QLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQW 983
Query: 1008 MSKLMGYDFEIKYKPGIENKAADALSR----KLQFSAISSVQCAEWADLEAEILGDERYR 1063
+ KL+ +D+EI+Y+ G EN ADALSR ++ A++ V+C D++A D + +
Sbjct: 984 LPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQ 1043
Query: 1064 KVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTY 1123
++ L +S + + L K +IV+P T+L H + +GGH+G T+
Sbjct: 1044 DIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTH 1103
Query: 1124 KRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGG 1183
+R+ LFYW+GM DIQ Y++ C CQ+ K + G LQPLPIP W+++SMDFI G
Sbjct: 1104 QRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEG 1163
Query: 1184 LPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRV 1243
LP + GK I+VVVDR +K AHFIALSHPY+A +A ++ V KLHG PTSIVSDRD V
Sbjct: 1164 LPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVV 1223
Query: 1244 FLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWA 1303
F S FW E F L G LK +SAYHPQ+DGQTEVVNRC+ETYLRC+ +P+ W KWL+ A
Sbjct: 1224 FTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALA 1283
Query: 1304 EFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLE 1363
E+WYNTNYHS+ + TPF+ +YG+ PV + V V + ER +L LK +L
Sbjct: 1284 EYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLM 1343
Query: 1364 KAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKIN 1423
+AQ+RM+Q A++HR + ++E+GD VY+K+QPY+ +S+ R+NQKLSP+Y+GPY II +
Sbjct: 1344 RAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCG 1403
Query: 1424 PAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENR 1483
AYKL LP SQVHPVFH+S LK V + LP+ + + +E KV + + NR
Sbjct: 1404 EVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFE-KVPEKVVERKMVNR 1462
Query: 1484 DGD--LEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQ 1517
G +VL++W + P E +WE L FP +
Sbjct: 1463 QGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEFE 1498
>At1g36590 hypothetical protein
Length = 1499
Score = 1093 bits (2827), Expect = 0.0
Identities = 613/1536 (39%), Positives = 904/1536 (57%), Gaps = 85/1536 (5%)
Query: 8 MESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHNSVSTA 67
++SRV LE ++ E + +QF +L + LSR + R + R S+
Sbjct: 22 LDSRVTRLETTVAEQHKEMMKQFADLYAV-LSRSTAGKMVDEQSTLDRSAPRSSQSME-- 78
Query: 68 RTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWVTKVER 127
+R+G R A + +H++ ++L + ++D P F+G W+ KVE
Sbjct: 79 -----NRSGYLDPYRDARHQQVRSDHFNAYNNLTRLG--KIDFPRFDGTRLKEWLFKVEE 131
Query: 128 FFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA----WEPFKQALFRRFQPALL 183
FF + E K++M I + A W Q + + + W+ + + L RF+
Sbjct: 132 FFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKERFEDDC- 190
Query: 184 QNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPAD 243
+P L +++ +++Y + FEL+ + N E L V+L GL+ + + ++++
Sbjct: 191 DDPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHVRMFQPQ 249
Query: 244 DLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSMGRIANSYVNF 303
+ + E+ + KP ++T S R A +
Sbjct: 250 TVRHCLFLGKTYEKAHLK----KP-------------------ANTTWSTNRSAPT---- 282
Query: 304 QSKGGTGNQDNEGKS-LQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
GG EG+S + G GN +QP+K ++Q E+ +R KGLC+ C
Sbjct: 283 ---GGYNKYQKEGESKTDHYGNKGNFKPVSQQPKK-------MSQQEMSDRRSKGLCYFC 332
Query: 363 GDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSN 422
+K+ EH K QL M+V DEE E+ EE + + + + Q+S+N+ G+
Sbjct: 333 DEKYTPEHYLVHKKTQLFRMDV--DEEFEDAREELVNDD---DEHMPQISVNAVSGIAGY 387
Query: 423 RSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGV 482
++ +VKG + + ILID G+T NF+ + +L V V V +G K R G
Sbjct: 388 KTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGK 447
Query: 483 CKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVL 542
+ ++Q ++ L G ++VLG+ WL +LG I F++L +++ QK++L
Sbjct: 448 VTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLL 507
Query: 543 QG--EPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEV------------PE 588
G SV +V A K+ + QE + Q+ E TE E+
Sbjct: 508 HGLTSGSVREVKAQ----KLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEES 563
Query: 589 GMRKILEEYPEVFQEPKGLPP-RRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKE 647
+ ++L EYP++F EP LPP R +H I+L EG++ N RPYRY +QKNEI+KLV++
Sbjct: 564 VVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVED 623
Query: 648 MLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGA 707
+L +G ++ S+SP++SP +LVKKKDG WR CVDYR +N T+ D FPIP+I++L+DE+G
Sbjct: 624 LLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 708 AVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLR 767
AV+FSK+DL++GYHQ+RM +DI KTAF+TH GH+EYLV+PFGLTNAP+TFQ LMN + +
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFK 743
Query: 768 PYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHV 827
P+LRKFVLVFF DIL+YS + E H+ HL+ V +V++ N L A KC+F P++ YLGH
Sbjct: 744 PFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHF 803
Query: 828 ISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNS 887
IS G+ DP+KIK + +WP P +K LRGFLGL GYYRRFV+++ +A PL+ L K ++
Sbjct: 804 ISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDA 863
Query: 888 FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSK 947
F+WT A QAF LK + PVL P FDK F++ETDA G+G+GAVLMQEG P+AY+S+
Sbjct: 864 FEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISR 923
Query: 948 TLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKW 1007
L + S+YE+EL+AV+ AV+KWRHYLL S F+I TDQRSL++L +QR+ QQ+W
Sbjct: 924 QLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQW 983
Query: 1008 MSKLMGYDFEIKYKPGIENKAADALSR----KLQFSAISSVQCAEWADLEAEILGDERYR 1063
+ KL+ +D+EI+Y+ G EN ADALSR ++ A++ V+C D++A D + +
Sbjct: 984 LPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQ 1043
Query: 1064 KVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTY 1123
++ L +S + + L K +IV+P T+L H + +GGH+G T+
Sbjct: 1044 DIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTH 1103
Query: 1124 KRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGG 1183
+R+ LFY +GM DIQ Y++ C CQ+ K + G LQPLPIP W+++SMDFI G
Sbjct: 1104 QRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEG 1163
Query: 1184 LPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRV 1243
LP + GK I+VVVDR +K AHFIALSHPY+A +A+ ++ V KLHG PTSIVSDRD V
Sbjct: 1164 LPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVV 1223
Query: 1244 FLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWA 1303
F S FW E F L G LK +SAYHPQ+DGQTEVVNRC+ETYLRC+ +P+ W KWL+ A
Sbjct: 1224 FTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALA 1283
Query: 1304 EFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLE 1363
E+WYNTNYHS+ + TPF+ +YG+ PV + V V + ER +L LK +L
Sbjct: 1284 EYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLM 1343
Query: 1364 KAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKIN 1423
+AQ+RM+Q A++HR + ++E+GD VY+K+QPY+ +S+ R+NQKLSP+Y+GPY II +
Sbjct: 1344 RAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCG 1403
Query: 1424 PAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENR 1483
AYKL LP SQVHPVFH+S LK V + LP+ + + +E KV + + NR
Sbjct: 1404 EVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFE-KVPEKVVERKMVNR 1462
Query: 1484 DGD--LEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQ 1517
G +VL++W + P E +WE L FP +
Sbjct: 1463 QGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEFE 1498
>At1g35370 hypothetical protein
Length = 1447
Score = 933 bits (2412), Expect = 0.0
Identities = 508/1190 (42%), Positives = 734/1190 (60%), Gaps = 67/1190 (5%)
Query: 340 NGGQRLTQTELQERS-RKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAE 398
+GG E++++S GLC+ C +K+ EH K QL M+V DEE E+ E
Sbjct: 286 SGGSYRPVKEVEQKSDHLGLCYFCDEKFTPEHYLVHKKTQLFRMDV--DEEFEDAVEVLS 343
Query: 399 DGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELE 458
D + + + Q+S+N+ G++ ++ VKG + R++ ILID G+T NFI + +L
Sbjct: 344 DDDHE-QKPMPQISVNAVSGISGYKTMGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLG 402
Query: 459 IPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLAS 518
V + V V +G K G K ++Q ++ L G ++VLG+ WL +
Sbjct: 403 CHVESAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLET 462
Query: 519 LGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSY----- 573
LG I F++L +Q+ + Q++ L G + + + IK + Q+ + +
Sbjct: 463 LGRISWEFKKLEMQFFYKNQRVWLHGI-----ITGSVRDIKAHKLQKTQADQIQLAMVCV 517
Query: 574 -EYQKEEEK--------TEAEVPEGM-RKILEEYPEVFQEPKGLPP-RRTTDHAIQLQEG 622
E +EE+ T V E + + I+EE+P+VF EP LPP R DH I+L EG
Sbjct: 518 REVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEG 577
Query: 623 ASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYR 682
A+ N RPYRY +QK+EI+K+V++M+ SG I+ S+SPF+SP +LVKKKDG WR CVDY
Sbjct: 578 ANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYT 637
Query: 683 AINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHY 742
+N T+ D+F IP+I++L+DE+G +VVFSK+DL++GYHQ+RM +DI KTAF+TH GH+
Sbjct: 638 ELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHF 697
Query: 743 EYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVL 802
EYLV+ FGLTNAP+TFQ+LMN V R +LRKFVLVFF DILIYS + E HK+HLR+V +V+
Sbjct: 698 EYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVM 757
Query: 803 KENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLT 862
+ + L A K +LGH IS + DP+KI+ + +WP P VK +RGFLG
Sbjct: 758 RLHKLFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFA 809
Query: 863 GYYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFIL 922
GYYRRFV+N+ +A PL+ L K + F W+ EA AF LK V+ PVL P FDK F++
Sbjct: 810 GYYRRFVRNFGVIAGPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMV 869
Query: 923 ETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQF 982
ETDA G+G+ AVLMQ+G P+AY+S+ L + S+YE+EL+A + AV+KWRHYLL S F
Sbjct: 870 ETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHF 929
Query: 983 VIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSR----KLQF 1038
+I TDQRSL++L +QR+ QQ+W+ KL+ +D+EI+Y+ G EN ADALSR ++
Sbjct: 930 IIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLH 989
Query: 1039 SAISSVQCAEWADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGS 1098
A+S V+C +++ D + ++ L ++ Y + L K +IV+P
Sbjct: 990 MALSIVECDFLKEIQVAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDV 1049
Query: 1099 TKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALN 1158
+L+ H + +GG +G +++R+ +LFYW+GM DIQ +++ C CQ+ K +
Sbjct: 1050 EITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAA 1109
Query: 1159 PAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEI 1218
G LQPLPIP + W D+SMDFI GLP + GK I+VVVDR +K AHF+AL+HPY+A +
Sbjct: 1110 YPGLLQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTV 1169
Query: 1219 AEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVN 1278
A+ F+ V K HG PTSIVSDRD +F S FW E FKL G +L+ SSAYHPQ+DGQTEVVN
Sbjct: 1170 AQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVN 1229
Query: 1279 RCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSL 1338
RC+E YLRC+ ++P W KWL AE+WYNTNYHS+ + TPF+ +YG+ P+
Sbjct: 1230 RCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGK 1289
Query: 1339 TSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLK 1398
+ V V + ER +L LK +L +AQ+RM+Q A++HR + +++GD VY+K+QPY+ +
Sbjct: 1290 SKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQ 1349
Query: 1399 SLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQP 1458
S+ R NQKLSP+Y+GPY II K + V S
Sbjct: 1350 SVVLRVNQKLSPKYFGPYKIIEKCG-----------------------EVMVGNVTTSTQ 1386
Query: 1459 LPAALTEEWELKVEPEAIMD----TRENRDGDLEVLIRWKDLPTFEDSWE 1504
LP+ L + +E PE I++ R+ R + VL++W P E +W+
Sbjct: 1387 LPSVLPDIFE--KAPEYILERKLVKRQGRAATM-VLVKWIGEPVEEATWK 1433
Score = 70.1 bits (170), Expect = 1e-11
Identities = 68/306 (22%), Positives = 126/306 (40%), Gaps = 36/306 (11%)
Query: 1 MVLTRGAMESRV--------DDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTP 52
MV+TR + E V D + +T+++E+ EQ + + + D R+
Sbjct: 1 MVVTRSSQEEDVKGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMA--DMMSAMSRTTAK 58
Query: 53 RHRRSSRE-HNSVSTARTYDGSRTGSRTGSRTASRS-------REHHEHYHHRSHLRAVT 104
R + SV + T +R+G R R +E + Y + + L
Sbjct: 59 RVTEGEKVLDRSVPRSSTSSMARSGFVEHQRDFQRDFRPEMVRQEVNNQYGNLTRLG--- 115
Query: 105 GRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLE 164
++D P F+G+ W+ KVE FF + E K++MV I + A W + + +
Sbjct: 116 --KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIG 173
Query: 165 R----AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREV 220
W + + L RF+ A +P L +++ ++EY + FEL+ + N E
Sbjct: 174 LDVFFNWPEYVKLLKDRFEDA-CDDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEY 231
Query: 221 LKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGG 280
L V+L GL+ + + ++++ + + + E + PK+ W +KG
Sbjct: 232 LVSVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYERAH-------PKKTVSSTWSQKGT 284
Query: 281 VGGRYY 286
G Y
Sbjct: 285 RSGGSY 290
>At2g10780 pseudogene
Length = 1611
Score = 701 bits (1810), Expect = 0.0
Identities = 483/1453 (33%), Positives = 755/1453 (51%), Gaps = 126/1453 (8%)
Query: 121 WVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLE--RAWEPFKQALFRRF 178
W ++++R F+ +R E + ++ + +E A W+ E++ + R++ F+ +++
Sbjct: 194 WRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRSFADFEDEFNKKY 253
Query: 179 QP--ALLQNPFGPLLSVKQKGSVMEYKENFELLAAPM-RNADREVLK-GVFLNGLQEEIK 234
P A + L V+ +V EY E F L + R + E + F+ GL+ EI+
Sbjct: 254 FPPEAWDRLECAYLDLVQGNRTVREYDEEFNRLRRYVGRELEEEQAQLRRFIRGLRIEIR 313
Query: 235 AEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSMG 294
+ + ++EL++RA ++EE EE++ +EK + + D
Sbjct: 314 NHCLVRTFNSVSELVERAAMIEEGI---------EEERYLNREKAPIRNNQSTKPADKKR 364
Query: 295 RIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERS 354
+ + N +S TG GK N GT W
Sbjct: 365 KF-DKVDNTKSDAKTGECVTCGK---NHSGTC------------WKA------------- 395
Query: 355 RKGLCFKCGDKWGKEHIC-SMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSL 413
G C +CG K C M+ Q ++ EE F + G L+ + +L+
Sbjct: 396 -IGACGRCGSKDHAIQSCPKMEPGQSKVL----GEETRTCFYCGKTGH--LKRECPKLTA 448
Query: 414 NSKEGLTSNRSFKVKGKIGNREVLI--LIDCGATINFISQDLVVELEIPVIATSEY-VVE 470
+ G NR R+ + + + N + ++Y +V
Sbjct: 449 EKQAGQRDNRGGNGLPPPPKRQAVASRVYELSEEANDAGNFRAITGGFRKEPNTDYGMVR 508
Query: 471 VGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASL--------GNI 522
G +G+ + + + V G+ + I+ L +V+LGMDWL G I
Sbjct: 509 AAGGQAMYPTGLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKAHIDCHRGRI 568
Query: 523 EANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKT 582
+ E ++++ QG + G + + A K E YL+ KE +
Sbjct: 569 QFERDEGMLKF--QGIRTT-SGSLVISAIQAERMLGKGCEA------YLATITTKEVGAS 619
Query: 583 EAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIE 642
AE+ + I+ E+ +VF G+PP R+ I+L+ G + + PYR + +++
Sbjct: 620 -AELKD--IPIVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAKLK 676
Query: 643 KLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELL 702
K ++E+L+ G IR S+SP+ +P + VKKKDG +R C+DYR +NK T+ +K+P+P IDEL+
Sbjct: 677 KQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELM 736
Query: 703 DEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALM 762
D++G A FSK+DL SGYHQI ++ D+ KTAFRT H+E++V+PFGLTNAP+ F +M
Sbjct: 737 DQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMM 796
Query: 763 NQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEII 822
N V R +L +FV++F DIL+YSK+ E H++HLR VL+ L+E+ L A KCSF Q +
Sbjct: 797 NGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQRSVG 856
Query: 823 YLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQL 882
+LGHVIS GV+ DP KI+ + +WP P+ +R FLGL GYYRRFV +++ +AQPL +L
Sbjct: 857 FLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRL 916
Query: 883 L-KKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRP 941
K +F W++E ++F++LK ++T PVLV P +P+ + TDAS GLG VLMQ+G
Sbjct: 917 TGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSV 976
Query: 942 VAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMG 1001
+AY S+ L + ++ E+ AVV ++ WR YL G++ I+TD +SL+++ Q +
Sbjct: 977 IAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELN 1036
Query: 1002 EEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK-------------------LQFSAIS 1042
Q++WM + Y+ +I Y PG N+ ADALSR+ L +A+S
Sbjct: 1037 LRQRRWMELVADYNLDIAYHPGKANQVADALSRRRSEVEAERSQVDLVNMMGTLHVNALS 1096
Query: 1043 ------SVQCAEWADLEAEI-LGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLP 1095
+ A+ ADL + I L ER ++ + Q N G ++ R+ +P
Sbjct: 1097 KEVEPLGLGAADQADLLSRIRLAQERDEEI--KGWAQNNKTEYQTSNNGTIVVNGRVCVP 1154
Query: 1096 KGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYE 1155
+L+E H + H G + Y+ + ++W GMK D+ +V KC CQ K E
Sbjct: 1155 NDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAE 1214
Query: 1156 ALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGK--DTILVVVDRFTKYAHFIALSHPY 1213
P+G LQ LPIP W I+MDF+ GLP + + + VVVDR TK AHF+A+S
Sbjct: 1215 HQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKD 1274
Query: 1214 NAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQ 1273
A+ IAE +I E+V+LHG P SIVSDRD F S FW K GT++ S+AYHPQTD Q
Sbjct: 1275 GAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQ 1334
Query: 1274 TEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRE------ 1327
+E + +E LR W K+L EF YN ++ ++I +P++ALYGR
Sbjct: 1335 SERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLC 1394
Query: 1328 -SPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGD 1386
+PV + T VDE T ER ++ LK L++AQ+R + ANK R++++++VGD
Sbjct: 1395 WTPVGERRLFGPTIVDE----TTER---MKFLKIKLKEAQDRQKSYANKRRKELEFQVGD 1447
Query: 1387 LVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQL-PEGSQVHPVFHISL 1445
LVYLK YK + S +KLSPRY GPY +I ++ AYKL L P+ + H VFH+S
Sbjct: 1448 LVYLKAMTYK-GAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQ 1506
Query: 1446 LKKAVNAGVQS-QPLPAALTEEWELKVEPEAIMD--TRENRDGDLEVL-IRWKDLPTFED 1501
L+K ++ +S + +P L E ++ P IMD T+ R ++L + W E
Sbjct: 1507 LRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNCRGREEY 1566
Query: 1502 SWEDFSKLLDQFP 1514
+WE +K+ FP
Sbjct: 1567 TWETENKMKANFP 1579
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 642 bits (1656), Expect = 0.0
Identities = 382/1078 (35%), Positives = 583/1078 (53%), Gaps = 74/1078 (6%)
Query: 469 VEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQE 528
V+V G G K + +++ G + I + +V+LGMDWL + +
Sbjct: 365 VKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHY-RVHLDCHR 423
Query: 529 LIIQWVSQGQKMVLQG-EPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVP 587
+ + ++V QG P+ + + K ++ E Y ++ + + +V
Sbjct: 424 GRVSFERPEGRLVYQGVRPTSGSLVISAVQAKKMIEKGCEAYLVTISMPE----SLGQVA 479
Query: 588 EGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKE 647
++++E+ +VFQ +GLPP R+ I+L+ G + + PYR + E++K +++
Sbjct: 480 VSDIRVIQEFEDVFQSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLED 539
Query: 648 MLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGA 707
+L G IR STSP+ +P + VKKKDG +R C+DYR +N T+ +K+P+P IDELLD++
Sbjct: 540 LLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRG 599
Query: 708 AVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLR 767
A FSK+DL SGYHQI + E D+ KTAFRT GH+E++V+PF LTNAP+ F LMN V +
Sbjct: 600 ATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQ 659
Query: 768 PYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHV 827
+L +FV++F DIL+YSK+ E H+ HLR V++ L+E L A KCSF Q EI +LGH+
Sbjct: 660 EFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHI 719
Query: 828 ISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN- 886
+S GV+ DP KI+ + DWP P +R FL LTGYYRRFVK ++ +AQP+ +L K+
Sbjct: 720 VSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKDV 779
Query: 887 SFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMS 946
F W+ E + FV LKE++T+ PVL P +P+++ TDAS GLG VLMQ G+ +AY S
Sbjct: 780 PFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGKVIAYAS 839
Query: 947 KTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQK 1006
+ L ++ E+ V+ A++ WR YL G + + TD +SL+++ +Q + Q +
Sbjct: 840 RQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMR 899
Query: 1007 WMSKLMGYDFEIKYKPGIENKAADALSRKLQFSA--------ISSVQCAEWADLEAEILG 1058
WM + YD EI Y PG N ADALSRK +A +S + + E LG
Sbjct: 900 WMELVADYDLEIAYHPGKANVVADALSRKRVGAAPGQSVEALVSEIGALRLCVVAREPLG 959
Query: 1059 DERY--------RKVLQE-----LATQGNSAIGYQL-KRGRLLYKDRIVLPKGSTKILTV 1104
E ++ QE +A YQ G + R+ +PK +
Sbjct: 960 LEAVDRADLLTRARLAQEKDEGLIAASKAEGSEYQFAANGTIFVYGRVCVPKDEELRREI 1019
Query: 1105 LKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQ 1164
L E H + H G + Y+ + + W GMK D+ N+V +C+VCQ K E P
Sbjct: 1020 LSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVP----- 1074
Query: 1165 PLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIK 1224
D I V++DR TK AHF+A+ A +A+ ++
Sbjct: 1075 --------------------------DAIWVIMDRLTKSAHFLAIRKTDGAAVLAKKYVS 1108
Query: 1225 EVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETY 1284
E+VKLHG P SIVSDRD F FW GTK++ S+AYHPQTDGQ+E + +E
Sbjct: 1109 EIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDM 1168
Query: 1285 LRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGND----SLTS 1340
LR W LS EF YN +Y ++I PF+ALYGR + S+
Sbjct: 1169 LRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWTQVEERSIYG 1228
Query: 1341 VDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSL 1400
D V++ T ER + LK N+++AQ R R A+K RR++++EVGD VYLK+ + +
Sbjct: 1229 ADYVQE-TTER---IRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNR 1284
Query: 1401 AKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQV-HPVFHISLLKKAVNAGVQ-SQP 1458
+ KLSPRY GP+ I+ ++ P AY+L+LP+ + H VFH+ +L+K ++ +
Sbjct: 1285 SILET-KLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHKDDEVLVK 1343
Query: 1459 LPAALTEEWELKVEPEAIMDTR--ENRDGDLEVL-IRWKDLPTFEDSWEDFSKLLDQF 1513
+P L L+ P +++ R E R + ++ + W E++WE +++ +F
Sbjct: 1344 IPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARF 1401
Score = 45.8 bits (107), Expect = 2e-04
Identities = 52/204 (25%), Positives = 82/204 (39%), Gaps = 36/204 (17%)
Query: 117 DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLER-----AWEPFK 171
+A W ++V+R F SR ++++ + +E A WW T R +W F
Sbjct: 146 EADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDA---HLWWRSVTARRRQADMSWADFV 202
Query: 172 QALFRRFQPA-LLQNPFGPLLSVKQ-KGSVMEYKENFELLAAPMRNA--DREVLKGVFLN 227
++ P L L + Q + SV EY F L A D + FL
Sbjct: 203 AEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNRLLAYAGRGMEDDQAQMRRFLR 262
Query: 228 GLQEEIKAEMKLYPADDLAELMDRALLLEE---------------KNTAM-----RGGKP 267
GL+ +++ + ++ A L++ A +EE KNT +GGKP
Sbjct: 263 GLRPDLRVQCRVSQYATKAALVETAAEVEEDLQRQVVGVSPAVQTKNTQQQVTPSKGGKP 322
Query: 268 KEEDKRGW--KEKGGVGGR--YYS 287
+ KR W + G GGR Y+S
Sbjct: 323 AQGQKRKWDHPSRAGQGGRAGYFS 346
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 629 bits (1623), Expect = e-180
Identities = 397/1097 (36%), Positives = 591/1097 (53%), Gaps = 97/1097 (8%)
Query: 431 IGNREVLILIDCGATINFISQDLVVELEIPVIATSEY-VVEVGNGAKERNSGVCKNLKLE 489
+G E +L D GA+ FI+ + I + V+V G G K + ++
Sbjct: 308 VGGVEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQ 367
Query: 490 VQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVC 549
+ G + I + +V+LGMDWL + + + + +V QG
Sbjct: 368 IAGESMPADLIISPVELYDVILGMDWLDHY-RVHLDCHRGRVSFERPEGSLVYQG----- 421
Query: 550 KVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPP 609
V S+ I+ Q E + +G LE + +VFQ +GLPP
Sbjct: 422 -VRPTSGSLVISAVQ-----------------AEKMIEKGCEAYLE-FEDVFQSLQGLPP 462
Query: 610 RRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVK 669
R+ I+L+ G + + PYR + E++K ++++L + P + VK
Sbjct: 463 SRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGA------------PVLFVK 510
Query: 670 KKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEED 729
KKDG +R C+DYR +N T+ +K+P+P IDELLD++ A FSK+DL SGYH I + E D
Sbjct: 511 KKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEAD 570
Query: 730 IPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEE 789
+ KTAFRT GH+E++V+PFGLTNAP+ F LMN V + L +FV++F DIL+YSK+ E
Sbjct: 571 VRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLE 630
Query: 790 LHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIP 849
H+ HLR V++ L+E L A KCSF Q E+ +LGH++S GV+ DP KI+ + DW P
Sbjct: 631 EHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTP 690
Query: 850 KEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN-SFQWTEEATQAFVKLKEVMTTV 908
+R FLGL GYYRRFVK ++ +AQP+ +L K+ F W+ E + FV LKE++T+
Sbjct: 691 TNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTST 750
Query: 909 PVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVL 968
PVL P +P+++ TDASG GLG VLMQ G+ +AY S+ L ++ E+ AV+
Sbjct: 751 PVLALPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIF 810
Query: 969 AVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKA 1028
A++ WR YL G + TD +SL+++ Q + Q++WM + YD EI Y PG N
Sbjct: 811 ALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVV 870
Query: 1029 ADALSRKLQFSAISSVQCAEWADLEAEI--LGDERYRKVLQELATQGNSAIGYQ-LKRGR 1085
ADALS K V A +EA + +G R V +E +G + + R
Sbjct: 871 ADALSHK-------RVGAAPGQSVEALVSEIGALRLCAVARE-------PLGLEAVDRAD 916
Query: 1086 LLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQK 1145
LL + R+ K G+ YK EG + D+ N+V +
Sbjct: 917 LLTRVRLAQEKDE-------------------GLIAAYKA-------EGSE-DVANWVAE 949
Query: 1146 CEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAH 1205
C+VCQ K E P G LQ LPIP W I++DF+ GLP + KD I V+VDR TK AH
Sbjct: 950 CDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTKDAIWVIVDRLTKSAH 1009
Query: 1206 FIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSA 1265
F+A+ A +A+ ++ E+VKLHG P SIVSDRD F S FW GTK++ S+A
Sbjct: 1010 FLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTA 1069
Query: 1266 YHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYG 1325
YHPQT GQ+E + +E LR W LS EF YN +Y ++I PF+ALY
Sbjct: 1070 YHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAPFEALYE 1129
Query: 1326 R--ESPVIFK--GNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQ 1381
R +P+ G S+ D V++ T ER + LK N+++AQ+R R A+K RR+++
Sbjct: 1130 RPCRTPLCLTQVGERSIYGADYVQE-TTER---IRVLKLNMKEAQDRQRSYADKRRRELE 1185
Query: 1382 YEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQV-HPV 1440
+EVGD VYLK+ + + S KLSPRY GP+ I+ ++ P AY+L+LP+ + H V
Sbjct: 1186 FEVGDRVYLKMAMLRGPN-RSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKV 1244
Query: 1441 FHISLLKKAVNAGVQ-SQPLPAALTEEWELKVEPEAIMDTR--ENRDGDLEVL-IRWKDL 1496
FH+S+L+K ++ + +P L L+ P +++ R E R + ++ + W
Sbjct: 1245 FHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCD 1304
Query: 1497 PTFEDSWEDFSKLLDQF 1513
+++WE +++ +F
Sbjct: 1305 GVTKETWEPEARMKARF 1321
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 621 bits (1601), Expect = e-177
Identities = 313/661 (47%), Positives = 434/661 (65%), Gaps = 56/661 (8%)
Query: 590 MRKILEEYPEVFQEPKGLPPRRTT-DHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEM 648
+ K++ E+P++F EP LPP R DH I+L E ++ N RPYRY +QKNEI+K+V +M
Sbjct: 7 VEKVVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDM 66
Query: 649 LNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAA 708
L SG I+ S+SP++SP +LVKKKDG WR CVDYR +N T+ D+FPIP+I++L+DE+G +
Sbjct: 67 LASGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGS 126
Query: 709 VVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRP 768
V+SK+DL++GYHQ+RM DI KTAF+TH GHYEYLV+PFGLTNAP++FQ+LMN +P
Sbjct: 127 NVYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKP 186
Query: 769 YLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVI 828
+LRKFVLVFF DILIYS + E HK HL V +V++ ++L A KC+F P + YLGH I
Sbjct: 187 FLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFI 246
Query: 829 SQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSF 888
S G+A DP+KIK + DWP+P +K L GFLGLTGYYRRF
Sbjct: 247 SGEGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF-------------------- 286
Query: 889 QWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKT 948
F++E DA G G+GAVLMQEG P+A++S+
Sbjct: 287 -------------------------------FVVEMDACGHGIGAVLMQEGHPLAFISRQ 315
Query: 949 LSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWM 1008
L + S+YE+EL+AV+ V+KWRHYL+ S F+I TDQRSL++L +QR+ QQ+W+
Sbjct: 316 LKGKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRLNTPIQQQWL 375
Query: 1009 SKLMGYDFEIKYKPGIENKAADALSR----KLQFSAISSVQCAEWADLEAEILGDERYRK 1064
KL+ +D+EI+YK G EN ADALSR ++ A+S V+C +++A + D +
Sbjct: 376 PKLLEFDYEIQYKQGKENLVADALSRVEGSEVLHMALSVVECDLLKEIQAGYVTDGDIQG 435
Query: 1065 VLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYK 1124
++ L Q +S Y +G L K++IV+P S T+L+ H + +GGH+G T++
Sbjct: 436 IITILQQQADSKKHYTWSQGVLRRKNKIVVPNNSGIKDTILRWLHCSGMGGHSGKEVTHQ 495
Query: 1125 RISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGL 1184
R+ LFYW+ M DIQ +++ C CQ+ K + G LQPLPIP + W+D+SMDFI GL
Sbjct: 496 RVKGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDRIWSDVSMDFIDGL 555
Query: 1185 PKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVF 1244
P + GK I+VVVDR +K AHFIAL+HPY+A +A+ ++ V KLHG P+SIV RV
Sbjct: 556 PLSNGKTVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLHGCPSSIVVSSRRVL 615
Query: 1245 L 1245
+
Sbjct: 616 V 616
Score = 122 bits (307), Expect = 1e-27
Identities = 62/142 (43%), Positives = 92/142 (64%)
Query: 1318 TPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHR 1377
TP++A+YG+ P+ + V V + ER ++ LK +L +AQ+RM+Q A++H
Sbjct: 626 TPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQHI 685
Query: 1378 RDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQV 1437
+ ++EVGD V++K+QPY+ +S+ RS QKLSP+Y+GPY +I + AYKLQLP SQV
Sbjct: 686 TEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPANSQV 745
Query: 1438 HPVFHISLLKKAVNAGVQSQPL 1459
HPVFH+S L+ V S L
Sbjct: 746 HPVFHVSQLRVLVGTVTTSTHL 767
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 512 bits (1318), Expect = e-145
Identities = 283/764 (37%), Positives = 437/764 (57%), Gaps = 35/764 (4%)
Query: 481 GVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKM 540
G K + +++ G + I + +V+LGMDWL + ++ + + ++
Sbjct: 351 GRAKGVDIQIAGESMPADLIISPVELYDVILGMDWL-DYYRVHLDWHRGRVFFERPEGRL 409
Query: 541 VLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEV 600
V QG V ++ + + ++ E +Y ++ +V ++++E+ +V
Sbjct: 410 VYQG---VRPISGSLVISAVQAEKMIEKGCEAYLVTISMPESVGQVAVSDIRVVQEFQDV 466
Query: 601 FQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSP 660
FQ +GLPP ++ I+L+ G + + PYR + E++K +K++L G IR STSP
Sbjct: 467 FQSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSP 526
Query: 661 FSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGY 720
+ +P + VKKKDG +R C+DYR +N+ T+ +++P+P IDELLD++ A FSK+DL SGY
Sbjct: 527 WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGY 586
Query: 721 HQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYD 780
HQI + E D+ KTAFRT GH+E++V+PFGLTNAP+ F LMN V + +L +FV++F D
Sbjct: 587 HQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDD 646
Query: 781 ILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKI 840
IL+YSK+ E + HLR V++ L+E L A KCSF Q E+ +LGH++S GV+ DP KI
Sbjct: 647 ILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKI 706
Query: 841 KDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN-SFQWTEEATQAFV 899
+ + DWP P +R FLG GYYRRFVK ++ +AQP+ +L K+ F W++E + FV
Sbjct: 707 EAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFV 766
Query: 900 KLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVY 959
LKE++T+ PVL P +P+++ TDAS GLG VLMQ G+ +AY S+ L +
Sbjct: 767 SLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTH 826
Query: 960 ERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIK 1019
+ E+ AV+ A++ WR YL G + + TD +SL+++ Q + Q++WM + YD EI
Sbjct: 827 DLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIA 886
Query: 1020 YKPGIENKAADALSRKLQFSAISSVQCAEWADLEAEILGDERYRKVLQELATQGNSAIGY 1079
Y PG N DALSRK +A+ + ++ +G R V +E +G
Sbjct: 887 YHPGKANVVVDALSRKRVGAAL-----GQSVEVLVSEIGALRLCAVARE-------PLGL 934
Query: 1080 Q-LKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLD 1138
+ + R LL + R+ K T + Y+ + + W GMK+D
Sbjct: 935 EAVDRADLLTRVRLAQKKDEGLRAT-----------------KMYRDLKRYYQWVGMKMD 977
Query: 1139 IQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVD 1198
+ N+V +C+VCQ K E G LQ LPIP W I+MD + GL + KD I V+VD
Sbjct: 978 VANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLRVSRTKDAIWVIVD 1037
Query: 1199 RFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDR 1242
R TK AHF+A+ A +A+ F+ E+VKLHG P ++ +DR
Sbjct: 1038 RLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQDR 1081
Score = 92.0 bits (227), Expect = 2e-18
Identities = 52/158 (32%), Positives = 95/158 (59%), Gaps = 6/158 (3%)
Query: 1361 NLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIA 1420
N+++AQ+R R A+K RR++++EVGD VYLK+ + + + S KLSPRY GP+ I+
Sbjct: 1074 NMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSI-SETKLSPRYMGPFKIVE 1132
Query: 1421 KINPAAYKLQLPEGSQV-HPVFHISLLKKAVNAGVQS-QPLPAALTEEWELKVEPEAIMD 1478
++ P AY+L+LP+ + H VFH+S+L+K ++ ++ +P L L+ P +++
Sbjct: 1133 RVEPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLEARPVRVLE 1192
Query: 1479 TR--ENRDGDLEVL-IRWKDLPTFEDSWEDFSKLLDQF 1513
R E R + ++ + W E++WE +++ +F
Sbjct: 1193 RRIKELRQKKIPLIKVLWDCDGVTEETWEPEARMKARF 1230
Score = 39.7 bits (91), Expect = 0.014
Identities = 48/210 (22%), Positives = 79/210 (36%), Gaps = 57/210 (27%)
Query: 106 RRVDIPMFNGN----DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQ 161
+R+D F+G +A W ++V R F SR ++++ + +E A WW
Sbjct: 145 QRIDTGYFSGGTSPEEADSWRSRVGRNFGSSRCPAEYRVDLAVHFLEGDA---HLWWRSV 201
Query: 162 TLER-----AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNA 216
T R +W F ++ P +P+ G ME + A MR
Sbjct: 202 TARRRQTDMSWADFVAEFKAKYFPQEALDPYA--------GQGMEDDQ------AQMRR- 246
Query: 217 DREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEE------------------- 257
FL GL+ +++ ++ A L++ A +EE
Sbjct: 247 --------FLRGLRPDLRVRCRVSQYATKAALVETAAEVEEDFQRQVVGVSPVVQPKKTQ 298
Query: 258 -KNTAMRGGKPKEEDKRGW--KEKGGVGGR 284
+ T +GGKP + KR W + G GGR
Sbjct: 299 QQVTPSKGGKPAQGQKRKWDHPSRAGQGGR 328
>At2g06890 putative retroelement integrase
Length = 1215
Score = 473 bits (1216), Expect = e-133
Identities = 338/1029 (32%), Positives = 515/1029 (49%), Gaps = 104/1029 (10%)
Query: 202 YKENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTA 261
YKE L+ + DRE FL L +I+ ++ + E++ +A+L E++
Sbjct: 36 YKEMETLMLRADISEDREATLSRFLGDLNRDIQDRLETQYYVQIEEMLHKAILFEQQV-- 93
Query: 262 MRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSMGRIAN-SYVNFQSKGGTGNQDNEGKSLQ 320
K K Y S T IA +Y + N+ +
Sbjct: 94 --------------KRKSSSRSSYGSGT------IAKPTYQREERTSSYHNKPIVSPRAE 133
Query: 321 NKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLI 380
+K QD +GK R R C+KC K + C K +I
Sbjct: 134 SKPYAAVQDHKGKAEIST-------------SRVRDVRCYKCQGKGHYANECPNKRV-MI 179
Query: 381 LMEVEEDEEEEEI------FEEAED----GEFVLEGKVLQLSLNSKEGLTSNRSFKVKGK 430
L++ E E EEEI +E E+ GE ++ + L + + E F +
Sbjct: 180 LLDNGEIEPEEEIPDSPSSLKENEELPAQGELLVARRTLSVQTKTDEQEQRKNLFHTRCH 239
Query: 431 IGNREVLILIDCGATINFISQDLVVELEIPVIATS-------EYVVEVGNGAKERNSGVC 483
+ + ++ID G+ N S+ +V +L + + S + VV + G K + +C
Sbjct: 240 VHGKVCSLIIDGGSCTNVASETMVKKLGLKWLNDSGKMRVKNQVVVPIVIG-KYEDEILC 298
Query: 484 KNLKLEVQGIPI---------MQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWV 534
L +E I + + H E G L S+ E +Q+ I +
Sbjct: 299 DVLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEV-YQDQI--HL 355
Query: 535 SQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKIL 594
Q ++ V++ +P+ + KS ++Q ++ E +P M +L
Sbjct: 356 KQKKEQVVK-QPNFFAKSGEVKSAYSSKQPML--LFVFKEALTSLTNFAPVLPSEMTSLL 412
Query: 595 EEYPEVFQE--PKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSG 652
++Y +VF E PKGLPP R +H I GAS+PN P Y+ N +E KE
Sbjct: 413 QDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPN-----RPAYRTNPVE--TKE----- 460
Query: 653 IIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFS 712
L ++KDG WR C D RAIN T+ PIP +D++LDE+ + +FS
Sbjct: 461 --------------LQRQKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFS 506
Query: 713 KLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRK 772
K+DLKSGYHQIRM E D KTAF+T G YE+LV+PFGLT+APSTF LMN VLR ++
Sbjct: 507 KIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGI 566
Query: 773 FVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAG 832
FV+V+F DIL+YS++ H +HL VL VL++ L AN KKC+F +++LG V+S G
Sbjct: 567 FVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADG 626
Query: 833 VAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN-SFQWT 891
V D K+K + DWP PK V +R F GL G+YRRF K++S + PL +++KK+ F+W
Sbjct: 627 VKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWE 686
Query: 892 EEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSD 951
+ +AF LK+ +T PVL+ F K F +E DASG G+GAVLMQ+ + +A+ S+ L
Sbjct: 687 KAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGG 746
Query: 952 RAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKL 1011
Y++EL A+V A+Q+W+HYL FVIHTD SL+ L Q+ + + +W+ +
Sbjct: 747 ATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEFI 806
Query: 1012 MGYDFEIKYKPGIENKAADALSRKLQFSAISSVQCAEWADLEAEILGDERYRKVLQELAT 1071
+ + IKYK G +N ADALS++ + +V+ + ++ D +++V + A
Sbjct: 807 ETFAYVIKYKKGKDNVVADALSQRYTLLSTLNVKLMGFEQIKEVYETDHDFQEVYK--AC 864
Query: 1072 QGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFY 1131
+ ++ Y + L Y++R+ +P S + L V +E H L GH GI +T + ++ F
Sbjct: 865 EKFASGRYFRQDKFLFYENRLCVPNCSLRDLFV-REAHGGGLMGHFGIAKTLEVMTEHFR 923
Query: 1132 WEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKD 1191
W MK D++ +C C++ K + P G PLPIP W DISMDF+ GLP+ GKD
Sbjct: 924 WPHMKCDVKRICGRCNTCKQAK-SKIQPNGLYTPLPIPKHPWNDISMDFVMGLPRT-GKD 981
Query: 1192 TILVVVDRF 1200
+I VV F
Sbjct: 982 SIFVVYSPF 990
Score = 55.1 bits (131), Expect = 3e-07
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 1354 ILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYY 1413
I E + N+E+ +QANK RR+ +EVGD+V++ ++ + + K KL PR
Sbjct: 1027 IHENARRNIEEKTKLYAKQANKGRREQIFEVGDMVWIHLRKERFPAQRK---SKLMPRID 1083
Query: 1414 GPYPIIAKINPAAYKLQLPE 1433
GP+ II +IN AY+L L +
Sbjct: 1084 GPFKIIKRINDNAYQLDLQD 1103
>At3g31970 hypothetical protein
Length = 1329
Score = 453 bits (1165), Expect = e-127
Identities = 288/835 (34%), Positives = 430/835 (51%), Gaps = 104/835 (12%)
Query: 709 VVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRP 768
V S + + + I + E ++ KTAFRT GH+E++V+PFGLTN P+ F LMN V +
Sbjct: 559 VAVSDIRVVHEFEDIPIAEANVRKTAFRTRYGHFEFVVMPFGLTNIPTAFMRLMNSVFQE 618
Query: 769 YLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVI 828
+L +FV++F DIL+YSK+ E H+ +Q + + A
Sbjct: 619 FLDEFVIIFIDDILVYSKSPEEHE------VQSEESDGEAAG------------------ 654
Query: 829 SQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN-S 887
++ GV+ D KI+ + DWP P +R FLGL GYY+RFVK ++ +AQP+ +L K+
Sbjct: 655 AEVGVSVDLEKIEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTKLTGKDVP 714
Query: 888 FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSK 947
F W+ E + F+ LKE++T+ PVL P +P+++ TDAS GL VLMQ G+
Sbjct: 715 FVWSPECDEGFMSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRGK------- 767
Query: 948 TLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKW 1007
+ TD +SL+++ Q + Q++W
Sbjct: 768 ------------------------------------VFTDHKSLKYIFTQPELNLRQRRW 791
Query: 1008 MSKLMGYDFEIKYKPGIENKAADALSRKLQFSAISS-----------VQCAEWADLEAEI 1056
M + YD EI Y G N ADALSRK ++ + V E LEA
Sbjct: 792 MELVADYDLEIAYHSGKANVVADALSRKRVGGSVEALVSEIGALRLCVMAQEPLGLEAVD 851
Query: 1057 LGDERYRKVLQELATQGNSAIG------YQLK-RGRLLYKDRIVLPKGSTKILTVLKEFH 1109
D R L + +G A YQ G +L R+ +PK +L E H
Sbjct: 852 RADLLTRVRLAQEKDEGLIAASKADGSEYQFAANGTILVHGRVCVPKDEELRREILSEAH 911
Query: 1110 DTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIP 1169
+ H + Y+ + + W GMK D+ N+V +C+VCQ K E P G LQ LPI
Sbjct: 912 ASMFSIHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVPGGLLQSLPIL 971
Query: 1170 SQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKL 1229
W I+MDF+ GLP + KD I V+VDR TK AHF+A+ A +A+ ++ E+V+L
Sbjct: 972 EWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAVLLAKKYVSEIVEL 1031
Query: 1230 HGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVT 1289
HG P SIVSDRD F S FW GTK++ S+AYHPQTDGQ+E + +E LR
Sbjct: 1032 HGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCV 1091
Query: 1290 GSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGR--ESPVIFK--GNDSLTSVDEVE 1345
+ W LS EF YN +Y ++I+ PF+ALYGR +P+ + G S+ D V
Sbjct: 1092 LDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERSIYGADYVL 1151
Query: 1346 KWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSN 1405
+ T ER + LK N+++AQ+R R A+K RR++++EVGD VYLK+ + + S
Sbjct: 1152 E-TTER---IRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPN-RSISE 1206
Query: 1406 QKLSPRYYGPYPIIAKINPAAYKLQLPEGSQV-HPVFHISLLKKAVN------AGVQSQP 1458
KL+PRY GP+ I+ ++ P AY+L+LP+ + H VFH+S+L+K ++ A +
Sbjct: 1207 TKLTPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKILEDL 1266
Query: 1459 LPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQF 1513
P E +++ I + R + ++VL W E++WE +++ F
Sbjct: 1267 QPNMTLEARPVRILERRIKELRRKKIPLIKVL--WNCDGVTEETWEPEARMKASF 1319
Score = 38.1 bits (87), Expect = 0.040
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 117 DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLER-----AWEPFK 171
+A W ++VE F SR ++++ + +E A WW T R +W F
Sbjct: 166 EADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDA---HLWWRSVTARRRQAHMSWADFV 222
Query: 172 QALFRRFQP-ALLQNPFGPLLSVKQ-KGSVMEYKENFE--LLAAPMRNADREVLKGVFLN 227
++ P L L + Q + SV EY+ F L+ A D + FL
Sbjct: 223 AEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNRLLVYAGRGMQDDQAQMRRFLR 282
Query: 228 GLQEEIKAEMKLYPADDLAELMDRALLLEE---------------KNTAM-----RGGKP 267
GL+ +++ ++ A L++ A +EE K T +GGKP
Sbjct: 283 GLRPDLRVRCRVLQYATKAALVETAAEVEEDLQRQVVGVSPAVKPKKTQQQVAPSKGGKP 342
Query: 268 KEEDKRGWKEKG 279
+ KR KE+G
Sbjct: 343 AQGQKR--KERG 352
>At4g16910 retrotransposon like protein
Length = 687
Score = 381 bits (978), Expect = e-105
Identities = 247/699 (35%), Positives = 373/699 (53%), Gaps = 52/699 (7%)
Query: 875 LAQPLNQLLKKNS-FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGA 933
+AQP+ QL K++ F W+EE ++F++LK ++T PVLV P +P+ + TDAS GLG
Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60
Query: 934 VLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRF 993
VL+Q+G +AY S+ L + + E+ AVV A++ WR YL G++ I TD +SL++
Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120
Query: 994 LADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSR------------------- 1034
+ Q + Q++W+ + YD I Y PG N+ DALSR
Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAERNQVNLVNMMG 180
Query: 1035 KLQFSAISS------VQCAEWADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLY 1088
L +A+S ++ A ADL + I + + ++ A Q N G ++
Sbjct: 181 TLHLNALSKEVEPLGLRAANQADLLSRIRSAQERDEEIKGWA-QNNKTEYQSSNNGTIVV 239
Query: 1089 KDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEV 1148
R+ P +LKE H + H G + Y+ + ++W GMK D+ +V K
Sbjct: 240 NGRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAK--- 296
Query: 1149 CQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGK--DTILVVVDRFTKYAHF 1206
E P+G LQ LPIP W I MDF+ GLP + + + VVVDR TK AHF
Sbjct: 297 -----EEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHF 351
Query: 1207 IALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAY 1266
+A+S A+ IAE +I E+V+LHG P SIVSDRD F S FW K+ GT++ S+AY
Sbjct: 352 MAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAY 411
Query: 1267 HPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGR 1326
HPQTDGQ+E + +E LR W K+L EF YN ++ ++I +P++ALYGR
Sbjct: 412 HPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGR 471
Query: 1327 --ESPVIFK--GNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQY 1382
+P+ + G L V++ T + ++ LK L++AQ+R + ANK R+++++
Sbjct: 472 AGRTPLCWTPVGERRLFGPAVVDETTKK----MKFLKIKLKEAQDRQKSYANKRRKELEF 527
Query: 1383 EVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQL-PEGSQVHPVF 1441
+VGDLVYLK YK + S +KL PRY GPY +I ++ AYKL L P+ H VF
Sbjct: 528 QVGDLVYLKAMTYK-GAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVF 586
Query: 1442 HISLLKKAVNAGVQS-QPLPAALTEEWELKVEPEAIMD--TRENRDGDLEVL-IRWKDLP 1497
H+S L+K ++ +S + +P L E ++ P IMD + R +++L I W
Sbjct: 587 HVSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGG 646
Query: 1498 TFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDVANPSSR 1536
E +WE +K+ FP ++ Q G D++NP R
Sbjct: 647 REEYTWETETKMKANFP-EWFKEMGKDQLGFDLSNPIQR 684
>At4g07850 putative polyprotein
Length = 1138
Score = 379 bits (973), Expect = e-105
Identities = 209/501 (41%), Positives = 284/501 (55%), Gaps = 50/501 (9%)
Query: 827 VISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN 886
V S GV D K+K + +WP PK V +R F GL G+YRRFV+++S LA PL +++KKN
Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590
Query: 887 -SFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYM 945
F+W + AF LKE +T PVL P+F K F +E DA G G+GAVLMQ+ +P+AY
Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650
Query: 946 SKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQ 1005
S+ L Y++EL A+V A+Q W+HYL +FVIHTD SL+ L Q+ + +
Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710
Query: 1006 KWMSKLMGYDFEIKYKPGIENKAADALSRKLQFSAISSVQCAEWADLEAEILGDERYRKV 1065
+W+ + + + IKYK G +N ADALSR+ +
Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRRHE---------------------------- 742
Query: 1066 LQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKR 1125
G L Y +R+ +P S + L + +E H L GH G+ +T K
Sbjct: 743 ------------------GFLFYDNRLCIPNSSLRELFI-REAHGGGLMGHFGVSKTLKV 783
Query: 1126 ISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLP 1185
+ F+W MK D++ ++C C++ K ++ P G PLPIP W DISMDF+ GLP
Sbjct: 784 MQDHFHWPHMKRDVERMCERCTTCKQAKAKS-QPHGLCTPLPIPLHPWNDISMDFVVGLP 842
Query: 1186 KAM-GKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVF 1244
+ GKD+I VVVDRF+K AHFI +A IA +F +EVV+LHG P +IVSDRD F
Sbjct: 843 RTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKF 902
Query: 1245 LSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAE 1304
LS FW ++ GTKL FS+ HPQTDGQTEVVNR + T LR + K W L E
Sbjct: 903 LSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVE 962
Query: 1305 FWYNTNYHSAIKTTPFKALYG 1325
F YN + HSA K +PF+ +YG
Sbjct: 963 FAYNHSVHSATKFSPFQIVYG 983
Score = 74.7 bits (182), Expect = 4e-13
Identities = 39/85 (45%), Positives = 51/85 (59%), Gaps = 2/85 (2%)
Query: 595 EEYPEVFQE--PKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSG 652
++Y +VF E P+GLPP R +H I GAS+PN YR + E+EK V E++ G
Sbjct: 446 KDYQDVFPEENPEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERG 505
Query: 653 IIRHSTSPFSSPAILVKKKDGGWRF 677
I S SP + P +LV KKDG WRF
Sbjct: 506 HICESMSPCAVPVLLVPKKDGSWRF 530
Score = 67.0 bits (162), Expect = 8e-11
Identities = 100/432 (23%), Positives = 163/432 (37%), Gaps = 85/432 (19%)
Query: 41 DRRRTRGRSNTPRHRRSSREHNSVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHL 100
D R RSN R R+ R ++ +Y S++ +RT R R +E E + R +L
Sbjct: 21 DERFEAARSNQERKNRTMRNNSDREATLSY-YSQSSTRTSHRRQRRGQE--ERHPPRDNL 77
Query: 101 RAVTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEE 160
++ IP F+ EA K+++ D AL W W +
Sbjct: 78 ---ANLKLRIPPFH------------------EYTEANKVKVAATEFYDYALSW--WDQV 114
Query: 161 QTLER--------AWEPFKQALFRRFQPALLQNPFGPLLS--VKQKGSVMEY-KENFELL 209
T +R W K + RRF P+ L V+ +V EY KE L+
Sbjct: 115 VTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLM 174
Query: 210 AAPMRNADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKE 269
+ E F+ GL +I ++ ++L EL +A++ EK R KP
Sbjct: 175 LRADVQEECEATMSRFMGGLNRDILDRFEVIHYENLEELFHKAVMF-EKQIKRRSAKPS- 232
Query: 270 EDKRGWKEKGGVGGRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQD 329
Y+S+ S +Q + +G Q ++ K
Sbjct: 233 ----------------YNSSKPS----------YQREEKSGFQKEYKPFVKPK--VEEIS 264
Query: 330 TEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLIL----MEVE 385
++GK+ E R+R CFKC CS K +I +E E
Sbjct: 265 SKGKEKE--------------VTRTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEVESE 310
Query: 386 EDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGAT 445
+++ EE EEA GE ++ +VL + ++E F + I + ++ID G+
Sbjct: 311 DEKPEESDVEEAPKGELLVTMRVLSVLNKAEEQAQRENLFHTRCLIKGKVCSLIIDGGSC 370
Query: 446 INFISQDLVVEL 457
N S+ +V +L
Sbjct: 371 TNVASETMVQKL 382
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 379 bits (972), Expect = e-104
Identities = 205/520 (39%), Positives = 316/520 (60%), Gaps = 21/520 (4%)
Query: 468 VVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASL-GNIEANF 526
+V G + + + + + V G+ + I+ L +V+LGMDWL G+I+ +
Sbjct: 1 MVRAAGGQAMYPTRLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHR 60
Query: 527 QELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQE-------AEGYYLSYEYQKEE 579
+ IQ+ + QG + S+ I+ Q E Y + +E
Sbjct: 61 ER--IQFERDEGMLKFQG------IRTTSGSLVISAIQAERMLGKGCEAYLATIT--TKE 110
Query: 580 EKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKN 639
AE+ + + I+ E+ +VF G+PP R+ I+L+ G + + PYR +
Sbjct: 111 VGASAELKDIL--IVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMA 168
Query: 640 EIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIID 699
E++K ++E+L G IR S+SP+ +P + VKKKDG +R C+DYR +NK T+ +K+P+P ID
Sbjct: 169 ELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRID 228
Query: 700 ELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQ 759
EL+D++G A FSK+DL SGYHQI ++ D+ KTAFRT GH+E++V+PFGLTNAP+ F
Sbjct: 229 ELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFM 288
Query: 760 ALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQP 819
+MN V R +L +FV++F DIL++SK+ E H++HLR VL+ L+E+ L A K SF Q
Sbjct: 289 KMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQR 348
Query: 820 EIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPL 879
+ +LGHVIS GV+ DP KI+ + +WP P+ +R FLGL GYYRRFV +++ +AQPL
Sbjct: 349 SVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPL 408
Query: 880 NQLL-KKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQE 938
+L K +F W++E ++F++LK ++ PVLV P +P+ + TDAS GLG VLMQ+
Sbjct: 409 TRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQK 468
Query: 939 GRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLL 978
G +AY S+ L + ++ E+ AVV A++ WR YL+
Sbjct: 469 GSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 273 bits (698), Expect = 6e-73
Identities = 163/417 (39%), Positives = 235/417 (56%), Gaps = 20/417 (4%)
Query: 1074 NSAIGYQLKR-GRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYW 1132
N+ YQ G ++ R+ +P +L+E H + H G + Y+ + ++W
Sbjct: 524 NNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHW 583
Query: 1133 EGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGK-- 1190
GM+ D+ +V KC CQ K E P+G LQ LPI W I+MDF+ LP +
Sbjct: 584 VGMRKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKH 643
Query: 1191 DTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWS 1250
+ + VVVDR TK AHF+A+S A+ IAE +I E+++LHG P SIVSDRD F S FW+
Sbjct: 644 NAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWN 703
Query: 1251 EMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTN 1310
K GT++ S+AYHPQTDGQ+E + +E LR W K+L EF YN +
Sbjct: 704 AFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNS 763
Query: 1311 YHSAIKTTPFKALYGRE-------SPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLE 1363
+ ++I +P++ALYGR +PV + T VDE T ER ++ LK L+
Sbjct: 764 FQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDE----TTER---MKFLKIKLK 816
Query: 1364 KAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKIN 1423
+AQ+R + ANK R++++++VGDLVYLK YK + S +KLSPRY GPY +I ++
Sbjct: 817 EAQDRQKSYANKRRKELEFQVGDLVYLKAMTYK-GAGRFTSRKKLSPRYVGPYKVIERVG 875
Query: 1424 PAAYKLQLPEGSQV-HPVFHISLLKKAVNAGVQS-QPLPAALTEEWELKVEPEAIMD 1478
AYKL LP V H VFH+S L+K ++ +S + +P L E ++ P IMD
Sbjct: 876 AVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVEAWPVRIMD 932
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 309 bits (791), Expect = 9e-84
Identities = 259/871 (29%), Positives = 404/871 (45%), Gaps = 117/871 (13%)
Query: 605 KGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEI-EKLVKEMLNSGIIRH-STSPFS 662
KG+ P T H I L E S +I P R E+ +K + ++L++G+I S S +
Sbjct: 880 KGISPTLCT-HRIHL-ENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWV 937
Query: 663 SPAILVKKKDG------------------GWRFCVDYRAINKATIPDKFPIPIIDELLDE 704
SP V KK G G R C++YR +N A+ + FP+P ID +L+
Sbjct: 938 SPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLER 997
Query: 705 IGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQ 764
+ + LD SG+ QI + D KT F G + Y +PFGL NAP+TFQ M
Sbjct: 998 LANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTS 1057
Query: 765 VLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYL 824
+ + + V VF D +Y + +L VL+ +E NLV N +KC F E I L
Sbjct: 1058 IFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVL 1117
Query: 825 GHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLL- 883
G IS+ G+ D +KI M+ PK VK +R FLG G+YR F+K++SKLA+PL +LL
Sbjct: 1118 GRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLC 1177
Query: 884 KKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVA 943
K+ F + +E AF +KE + T P++ PN+D PF +
Sbjct: 1178 KETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEI--------------------- 1216
Query: 944 YMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEE 1003
T+ D + E+EL+AVV A +K+R YL+GS+ I+TD +LR + ++
Sbjct: 1217 ---ITMDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPR 1273
Query: 1004 QQKWMSKLMGYDFEIKYKPGIENKAADALSR-KLQFSAISSVQCAEWADLEAEILGDER- 1061
+W+ L +D EI K GIEN AD LSR +++ + E + + L +++
Sbjct: 1274 LLRWILLLQEFDMEIVDKKGIENGVADHLSRMRIEDEVLIDDSMPEEQLMAIQQLNEKKL 1333
Query: 1062 --YRKVLQELAT--QGNSAIGYQLKRG--------------RLLYKDRIVLP-KGSTKIL 1102
Y + L + + + Y+ K+ L KD+I +I
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 1103 TVLKEFHDTALGGHAGIFRTYKRI-SALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAG 1161
+L H A GGH F+T +I A F+W M D Q ++ KC+ +E + G
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCD-----SFENFDVWG 1448
Query: 1162 FLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEV 1221
+DF+G P + G ILV +D +K+ IA SH +A+ + ++
Sbjct: 1449 ----------------IDFMGPFPSSYGNKYILVAIDYVSKWVEAIA-SHTNDARVVLKL 1491
Query: 1222 FIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCV 1281
F + G P ++SD + F++ + + K G K K T GQ E+ NR +
Sbjct: 1492 FKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHK--------TSGQVEISNREI 1543
Query: 1282 ETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRES----PVIFKGNDS 1337
+ L GS K W L+ + Y T + + I TTPF LYG+ + +K +
Sbjct: 1544 KAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWA 1603
Query: 1338 LTSVDEVEKWTAERNLI-LEEL-KSNLEKAQ-NRMRQQANKHRRDVQ-----YEVGDLVY 1389
+ ++ K E+ LI L +L K LE + +++ ++ K D + ++VGD V
Sbjct: 1604 VKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVL 1663
Query: 1390 LKIQPYKLKSLAKRSNQKLSPRYYGPYPIIA 1420
L S + KL R+ GP+ + A
Sbjct: 1664 L------FNSRLRLFPGKLKSRWSGPFSVTA 1688
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 290 bits (742), Expect = 5e-78
Identities = 145/318 (45%), Positives = 205/318 (63%), Gaps = 5/318 (1%)
Query: 1212 PYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271
P ++ +A F+ VVKLHG P SIVSD D +F+S FW E +KL+ TKL S+AYHPQTD
Sbjct: 628 PLLSRSVAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTD 687
Query: 1272 GQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVI 1331
GQTEVVNRC+E +LRC PKQW ++ WAE+WYNT +H++ TPF+ALYGR I
Sbjct: 688 GQTEVVNRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRPPSPI 747
Query: 1332 FKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLK 1391
E+ + A R+ +L ELK +L A N M+QQA+ RDV ++VGD V L+
Sbjct: 748 PAYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLR 807
Query: 1392 IQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVN 1451
IQPY+ K+L +RS+QKLS R+YGP+ + +K AY+L LPEG+++HPVFH+SLLK V
Sbjct: 808 IQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRIHPVFHVSLLKPWVG 867
Query: 1452 AGVQSQPLPAALTEEWELKVEPEAIMDTR---ENRDGDLEVLIRWKDLPTFEDSWEDFSK 1508
G L ELK++P A+++ R +++ ++L++W+ L + +WE++ +
Sbjct: 868 DGEPDMGQLPPLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQ 927
Query: 1509 LLDQFPNH--QLEDKLSL 1524
L FP LEDK+ L
Sbjct: 928 LAASFPEFVLNLEDKVRL 945
Score = 223 bits (568), Expect = 7e-58
Identities = 137/403 (33%), Positives = 215/403 (52%), Gaps = 42/403 (10%)
Query: 377 YQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREV 436
Y +M+ E D+E E EE+ + E GK +++L + EG+ + + +V+ I +
Sbjct: 277 YVSAVMKGENDDEAVE--EESTEAE----GKP-EITLYALEGVDTTSTIRVRATIHRNRL 329
Query: 437 LILIDCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIM 496
+ LI+ G+T NFI + V + + T + V V NG + + + + G+
Sbjct: 330 IALINSGSTHNFIGEKAVRGMNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFP 389
Query: 497 QHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWK 556
+ L L G ++ +G+ WL++LG N++E +Q+ G ++ L G K
Sbjct: 390 VTLYALPLMGLDLAMGVQWLSTLGPTLCNWKEQTLQFHWAGDEVRLMGIKPTGLRGVEHK 449
Query: 557 SIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEG-MRKILEEYPEVFQEPKGLPPRRTTDH 615
+I ++A + + ++ P+G ++K++EE+ +F+ P LP R H
Sbjct: 450 TIT----KKARMGHTIFAITMAHNSSDPNTPDGEIKKLIEEFAGLFETPTQLPSERPIVH 505
Query: 616 AIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGW 675
I L++G N+RPYRY FYQK+E+ + +GIIR S+SPF SP +L
Sbjct: 506 RIALKKGTDPVNVRPYRYAFYQKDEMSR-------AGIIRPSSSPFLSPVLL-------- 550
Query: 676 RFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAF 735
++FPIP +D++LDE+ AV F+KLDL +GY Q+RM DIPK AF
Sbjct: 551 ---------------ERFPIPTVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAF 595
Query: 736 RTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFF 778
+TH GHYEYLV+PFGL NAPSTFQALMN++ P L + V F
Sbjct: 596 QTHNGHYEYLVMPFGLCNAPSTFQALMNEIFWPLLSRSVAAKF 638
Score = 54.7 bits (130), Expect = 4e-07
Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 56/239 (23%)
Query: 50 NTPRHRR--SSREHNSVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSH----LRAV 103
N RHRR + H + + G SR RT R + +R AV
Sbjct: 36 NEDRHRRLEEALAHLIEAVTQRESGGSAASRGSRRT---ERNQFQSTGNRGEPDNPFAAV 92
Query: 104 TGR---------RVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGW 154
T ++D P F+G D W++K +++F + + ++ A GW
Sbjct: 93 TANNNNAIARPSKLDFPRFHGGDLTKWLSKAKQYFEYHEGPVEQAVRFTTFHLDGVANGW 152
Query: 155 FQWWEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMR 214
+Q TL R+ ++ Q GS+ EY+ FE L +
Sbjct: 153 WQ----ATLRRS------------------------ATIGQTGSLSEYQHEFEWLQNKVY 184
Query: 215 NADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKR 273
+EVL G F+NGL I ++++ L E+++ + G K K +D+R
Sbjct: 185 GWTQEVLVGAFMNGLYYSISNGIRMFQPRSLREVINLRV----------GWKGKSKDRR 233
>At4g08100 putative polyprotein
Length = 1054
Score = 283 bits (725), Expect = 4e-76
Identities = 148/342 (43%), Positives = 206/342 (59%), Gaps = 29/342 (8%)
Query: 680 DYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHE 739
D RAIN T+ + PIP +D+ LD++ + +FSK+DLKSGYHQ RMKE D KTA +T +
Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586
Query: 740 GHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVL 799
YE+LV+PFGLTNAP+TF LMN VLR ++ FV+V+F DIL+YSKN E H HL++VL
Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646
Query: 800 QVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFL 859
+L++ L AN KKC+F +++LG V+S G+ D K+K + +WP PK V
Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNVSE----- 701
Query: 860 GLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKP 919
K F+W + AF LKE +T V + PNF K
Sbjct: 702 ------------------------KDIGFKWEDAQENAFQALKEKLTNSSVPILPNFMKS 737
Query: 920 FILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLG 979
F +E DASG G+GAVLMQ+ +P+AY S+ L Y++EL A+V A+Q W+HYL
Sbjct: 738 FEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWP 797
Query: 980 SQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYK 1021
+FVIHTD SL+ L Q+ + + +W+ + + + IKYK
Sbjct: 798 KKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYK 839
Score = 55.8 bits (133), Expect = 2e-07
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 1312 HSAIKTTPFKALYGRESPVIFKGNDSLTSV----DEVEKWTAERNLILEELKSNLEKAQN 1367
HSA K +PF+ +YG FK L + E ++ L + NLE
Sbjct: 851 HSATKFSPFEIVYG------FKPTSPLDLIPLPLSERSSLDGKKKDDLVQQVLNLEARTK 904
Query: 1368 RMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAY 1427
+ ++ ANK R++V + GD V++ ++ K + + KL PR GP+ ++ +IN AY
Sbjct: 905 QYKKYANKGRKEVIFNEGDQVWVHLRK---KRFPEVRSSKLMPRIDGPFKVLKRINNNAY 961
Query: 1428 KLQLPEGSQV 1437
KL L + S +
Sbjct: 962 KLDLQDTSDL 971
Score = 49.7 bits (117), Expect = 1e-05
Identities = 53/224 (23%), Positives = 91/224 (39%), Gaps = 35/224 (15%)
Query: 84 ASRSREHHEHYHHRSHLR-AVTGRRVDIPMFNGNDA----YGWVTKVERFFRLSRVEEAE 138
AS H R R + G ++ IP F+G D W K+E F ++
Sbjct: 69 ASSHSSQRRHRRERPPPRDPLGGLKLKIPAFHGTDNPDTYLEWEQKIELVFLCQECLQSN 128
Query: 139 KIEMVMIAMEDRALGWFQWWEEQTLER---------AWEPFKQALFRRFQPALLQNPFGP 189
K+++ + AL WW++ R W K + +RF P+
Sbjct: 129 KVKIAATKFYNYAL---SWWDQLVTSRRRTRDYPIKTWNQLKFVMRKRFVPSYYHRELHQ 185
Query: 190 LLSVKQKGS--VMEYKENFE--LLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPADDL 245
L +GS V EY E +L A ++ D E + F+ GL EI+ ++ +L
Sbjct: 186 RLRNLVQGSKTVEEYFLEMETLMLRADLQE-DGEAVMSRFMGGLNREIQDRLETQHYVEL 244
Query: 246 AELMDRALLLEEK-----------NTAMRGGKP--KEEDKRGWK 276
E++ +A++ E++ T GKP ++E+K G++
Sbjct: 245 EEMLHKAVMFEQQIKRKNARSSHTKTNYSSGKPSYQKEEKFGYQ 288
>At4g03650 putative reverse transcriptase
Length = 839
Score = 283 bits (723), Expect = 7e-76
Identities = 134/297 (45%), Positives = 195/297 (65%), Gaps = 1/297 (0%)
Query: 725 MKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIY 784
+ E D+ KTAFRT GH+E++V+PFGLTNAP+ F LMN V + +L +FV++F DIL+Y
Sbjct: 516 LAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 575
Query: 785 SKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDML 844
SK+ E H+ HLR V++ L+E L A KCSF Q E+ +LGH++S GV+ DP KI+ +
Sbjct: 576 SKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIR 635
Query: 845 DWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN-SFQWTEEATQAFVKLKE 903
DWP P +R FLGL GYYRRF+K ++ +AQP+ +L K+ F W+ E + FV LKE
Sbjct: 636 DWPRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKE 695
Query: 904 VMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYEREL 963
++T+ PVL P +P+++ TDASG GLG LMQ G+ +AY S+ L ++ E+
Sbjct: 696 MLTSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEM 755
Query: 964 MAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKY 1020
AV+ A++ WR YL G + + TD +SL+++ Q + Q++WM + YD EI Y
Sbjct: 756 AAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAY 812
Score = 38.5 bits (88), Expect = 0.031
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 592 KILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNS 651
++++E+ VFQ +GLPP R+ I+L+ + + PYR + E++K ++++L
Sbjct: 459 RVVQEFQYVFQSLQGLPPSRSDPFTIELEPKTAPLSKAPYRMAPAKMAELKKQLEDLLAE 518
Query: 652 GIIRHSTSPFSSPAILVKKKDGGWRFCV-DYRAINKATIPDKFPIPIIDELLDE-----I 705
+R + + + G + F V + N + + E LDE I
Sbjct: 519 ADVRKTA---------FRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFI 569
Query: 706 GAAVVFSKLDLKSGYHQIRMKEE--------DIPKTAFRTHE-GHYEYLVLPFGLTNAPS 756
+V+SK + H R+ E+ + K +F E G ++V G++ P
Sbjct: 570 DDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPE 629
Query: 757 TFQAL 761
+A+
Sbjct: 630 KIEAI 634
Score = 35.0 bits (79), Expect = 0.34
Identities = 40/165 (24%), Positives = 66/165 (39%), Gaps = 16/165 (9%)
Query: 106 RRVDIPMFNGN----DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQ 161
+R+ F+G +A W ++VER F SR ++++ + +E A WW
Sbjct: 149 QRIGTEYFSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDA---HLWWRSV 205
Query: 162 TLER-----AWEPFKQALFRRFQP-ALLQNPFGPLLSVKQ-KGSVMEYKENFE--LLAAP 212
T R +W F ++ P L L + Q SV EY F L+ A
Sbjct: 206 TARRRQADMSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAG 265
Query: 213 MRNADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEE 257
D + FL GL+ ++ ++ A L++ A +EE
Sbjct: 266 RGMEDDQAQMRRFLRGLRPNLRVRCRVSQYATKAALVETAAEVEE 310
Score = 34.7 bits (78), Expect = 0.45
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 1257 GTKLKFSSAYHPQTDGQTE 1275
GTK++ S+ YHPQTDGQ+E
Sbjct: 818 GTKVQMSTTYHPQTDGQSE 836
>At4g07830 putative reverse transcriptase
Length = 611
Score = 276 bits (706), Expect = 7e-74
Identities = 190/609 (31%), Positives = 291/609 (47%), Gaps = 75/609 (12%)
Query: 936 MQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLA 995
MQ G+ +AY S+ L ++ E+ AV TD +SL+++
Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAVF------------------TDHKSLKYIF 42
Query: 996 DQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK-------------------L 1036
Q + ++WM + YD EI Y PG N DALSRK L
Sbjct: 43 TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETLVIEIGAL 102
Query: 1037 QFSAISSVQCAEWADLEAEILGDERYRKVLQELATQGNSAIGYQLK---RGRLLYKDRIV 1093
+ A++ A + ++L + + E + A G++ + G +L R+
Sbjct: 103 RLCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAEGFEYQFAANGTILVHGRVC 162
Query: 1094 LPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNK 1153
+PK +L E H + H G + Y+ + + W GMK D+ N+V++C+VCQ K
Sbjct: 163 VPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQLVK 222
Query: 1154 YEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPY 1213
E LQ LPIP W I+MDF+ GLP + KD I V+VDR TK AHF+A+
Sbjct: 223 IEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTD 282
Query: 1214 NAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQ 1273
A +A+ ++ E+VKLHG P SIVSDRD F S FW GTK++ S+AYHPQTDGQ
Sbjct: 283 GAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQ 342
Query: 1274 TEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIF- 1332
+E + +E LR W LS EF YN +Y ++I PF+ LYGR +
Sbjct: 343 SERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRTLCW 402
Query: 1333 --KGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYL 1390
G S+ D V++ T + LK N+++AQNR R A+K R+++++EVGD V
Sbjct: 403 TQVGERSIYGADYVQEITER----IRVLKLNMKEAQNRQRSYADKRRKELEFEVGDSV-- 456
Query: 1391 KIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQV-HPVFHISLLKKA 1449
RS Q ++ P A++L+L + + H VFH+S+L+K
Sbjct: 457 -----SQDGHVARSEQ--------------RVGPVAFRLELSDVMRAFHKVFHVSMLRKC 497
Query: 1450 VNAGVQ-SQPLPAALTEEWELKVEPEAIMDTR----ENRDGDLEVLIRWKDLPTFEDSWE 1504
++ + +P L L+ P +++ R + L ++R D T E++WE
Sbjct: 498 LHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLRNCDGVT-EETWE 556
Query: 1505 DFSKLLDQF 1513
++L +F
Sbjct: 557 PEARLKARF 565
>At1g20390 hypothetical protein
Length = 1791
Score = 223 bits (569), Expect = 5e-58
Identities = 178/652 (27%), Positives = 307/652 (46%), Gaps = 54/652 (8%)
Query: 433 NREVLILIDCGATINFISQDLVVELEIPVIATSEYVVEVG------NGAKERNSGVCKNL 486
+R +LID G++++ I +D++ + I T + V +G G K L
Sbjct: 580 SRVTRVLIDTGSSVDLIFKDVLTAMNI----TDRQIKPVSKPLAGFDGDFVMTIGTIK-L 634
Query: 487 KLEVQGIPIMQHFFILGLGGT-EVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGE 545
+ V G+ F ++G V+LG W+ + I + + + + ++ + L+
Sbjct: 635 PIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCV-KFPTHNGIFTLRA- 692
Query: 546 PSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMR----KILEEYPEVF 601
P K + +S + +E E + AE+ +R +L+ + F
Sbjct: 693 PKEAKTPS--RSYEESELCRTEMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTF 750
Query: 602 ----QEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNE---------IEKLVKEM 648
++ KG+ P T N+ P P QK + + V+++
Sbjct: 751 AWSIEDMKGIDPAITAHEL----------NVDPTFKPVKQKRRKLGPERARAVNEEVEKL 800
Query: 649 LNSG-IIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGA 707
L +G II + + ++VKKK+G WR CVDY +NKA D +P+P ID L++
Sbjct: 801 LKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSG 860
Query: 708 AVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLR 767
+ S +D SGY+QI M ++D KT+F T G Y Y V+ FGL NA +T+Q +N++L
Sbjct: 861 NGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLA 920
Query: 768 PYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHV 827
+ + V V+ D+L+ S E H +HL VL + N KC+FG +LG+V
Sbjct: 921 DQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYV 980
Query: 828 ISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNS 887
+++ G+ A+P +I+ +L+ P P+ + ++ G RF+ + P LLK+ +
Sbjct: 981 VTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRA 1040
Query: 888 -FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEG----RPV 942
F W +++ +AF KLK+ ++T P+LV P + L S + +VL++E RP+
Sbjct: 1041 QFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPI 1100
Query: 943 AYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGE 1002
Y SK+L + V E+ +AVV + +K R Y + TDQ LR
Sbjct: 1101 FYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVALHSPSQSG 1159
Query: 1003 EQQKWMSKLMGYDFEIKYKPGIENKA-ADAL-SRKLQFS--AISSVQCAEWA 1050
KW +L YD + + +P ++++ AD L LQ + A+S + EW+
Sbjct: 1160 RMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEEWS 1211
Score = 118 bits (295), Expect = 3e-26
Identities = 98/364 (26%), Positives = 159/364 (42%), Gaps = 22/364 (6%)
Query: 1099 TKILTVLKEFHDTALGGHAGIFRTYKRISAL-FYWEGMKLDIQNYVQKCEVCQRNKYEAL 1157
T+I ++KE H+ A G H+G ++ L FYW M D + + KCE CQR+
Sbjct: 1433 TEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIH 1492
Query: 1158 NPAGFLQP--LPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNA 1215
P L+ P P W +MD +G +P + K ILV+ D FTK+ + + A
Sbjct: 1493 QPTELLRAGVAPYPFMRW---AMDIVGPMPASRQKRFILVMTDYFTKWVEAESYA-TIRA 1548
Query: 1216 KEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTE 1275
++ K ++ HG P I++D F+S + +L S+ +PQ +GQ E
Sbjct: 1549 NDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAE 1608
Query: 1276 VVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFK-G 1334
N+ + + L+ K W L + Y T SA TPF YG E+ + G
Sbjct: 1609 ATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVG 1668
Query: 1335 NDSLTSVDEVEKWTAERNLILEEL-------KSNLEKAQNRMRQQANKHRRDV---QYEV 1384
SL V+ ++L+ L + L + QN A + + V ++V
Sbjct: 1669 YSSLRRSMMVKNPELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDV 1728
Query: 1385 GDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHIS 1444
GDLV K+ ++ A+ + KL + G Y + + P Y+L G+ V ++
Sbjct: 1729 GDLVLRKV----FENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSM 1784
Query: 1445 LLKK 1448
LK+
Sbjct: 1785 HLKR 1788
>At4g04230 putative transposon protein
Length = 315
Score = 195 bits (496), Expect = 2e-49
Identities = 94/168 (55%), Positives = 125/168 (73%)
Query: 649 LNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAA 708
++ G IR S SP + P +LV KKDG WR C+D RAIN TI + PIP + ++LDE+ A
Sbjct: 125 IHKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGA 184
Query: 709 VVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRP 768
++FSK+DL+SGYHQ+RM+E D KTAF+T +G YE LV+PFGLTNAPSTF LMNQVLR
Sbjct: 185 IIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRS 244
Query: 769 YLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSF 816
++ KFV+V+F DILIY+K+ H L ++L+ L++ L AN KKC+F
Sbjct: 245 FIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTF 292
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,091,577
Number of Sequences: 26719
Number of extensions: 1669177
Number of successful extensions: 7073
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 6571
Number of HSP's gapped (non-prelim): 321
length of query: 1558
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1446
effective length of database: 8,326,068
effective search space: 12039494328
effective search space used: 12039494328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0106.8