BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.7.5
(63 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03820 putative nonsense-mediated mRNA decay protein 86 3e-18
At1g79280 hypothetical protein 29 0.38
At4g23860 unknown protein 28 0.65
At2g03520 putative integral membrane protein 27 2.5
At5g58580 putative protein 26 3.2
At2g39440 hypothetical protein 26 4.2
At3g49990 unknown protein 25 5.5
At3g56570 putative protein 25 7.2
At3g17170 unknown protein 25 7.2
At2g38440 unknown protein 25 7.2
At2g14140 putative transposase of FARE2.8 (cds1) 25 7.2
At5g63320 putative protein 25 9.4
At5g14270 kinase - like protein 25 9.4
At3g01860 unknown protein 25 9.4
At1g50090 branched-chain amino acid aminotransferase, putative 25 9.4
>At2g03820 putative nonsense-mediated mRNA decay protein
Length = 516
Score = 85.9 bits (211), Expect = 3e-18
Identities = 42/65 (64%), Positives = 54/65 (82%), Gaps = 3/65 (4%)
Query: 1 QFLNDLEENPDLRFNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADLELG---EDED 57
+FL DLEENP+LRFN+SLY++ ++Q SE AS+TDGE PSVP+EELLADL+L ED+D
Sbjct: 449 EFLRDLEENPELRFNISLYRDKDYQASETASMTDGEGAPSVPIEELLADLDLSFEEEDDD 508
Query: 58 EEDFM 62
+ED M
Sbjct: 509 DEDDM 513
>At1g79280 hypothetical protein
Length = 2111
Score = 29.3 bits (64), Expect = 0.38
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 3 LNDLEENPDLRFNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDEED 60
L DLEE D+ + + E QP +A+ T +EE +E ++D+ D
Sbjct: 1914 LEDLEEGTDVASMMRSPEKEEVQPETLATPTQSPSRMETAMEEAETTIETPVEDDKTD 1971
>At4g23860 unknown protein
Length = 452
Score = 28.5 bits (62), Expect = 0.65
Identities = 14/36 (38%), Positives = 20/36 (54%)
Query: 24 FQPSEMASVTDGEELPSVPLEELLADLELGEDEDEE 59
F+ ++T E + + EEL ADL LG DE +E
Sbjct: 6 FEDEAEGTITINEYIERLDAEELAADLVLGGDEGDE 41
>At2g03520 putative integral membrane protein
Length = 388
Score = 26.6 bits (57), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 14 FNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDE 58
F ++++ S A V E+L S+P E+L + +E GED+ E
Sbjct: 137 FLIAVFLGAAVHASNAADVK--EKLKSLPSEDLYSSIENGEDKPE 179
>At5g58580 putative protein
Length = 308
Score = 26.2 bits (56), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 7/58 (12%)
Query: 3 LNDLEENPDLRFNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDEED 60
+N +EE ++R +S E S G+ S+ L + DL+ G+D+ EE+
Sbjct: 197 VNAVEEEAEVRLQMS-------PAGENESNVSGDRRVSLSLSVMEDDLKTGDDDGEEE 247
>At2g39440 hypothetical protein
Length = 773
Score = 25.8 bits (55), Expect = 4.2
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 3 LNDLEENPDLRFNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDEE 59
L+D E+ P F LSL +E SE S +DG + EE D + E ++ E
Sbjct: 554 LDDSEDLPYPNF-LSLENQLETLKSESESYSDGSGMEVSSDEESALDSAIKESKESE 609
>At3g49990 unknown protein
Length = 502
Score = 25.4 bits (54), Expect = 5.5
Identities = 28/97 (28%), Positives = 40/97 (40%), Gaps = 44/97 (45%)
Query: 3 LNDLEENPDLRFNLSLYQNIEFQPSEMASVTDGE-------------------ELPSVP- 42
+ DLEE+ ++ NL+ Q E + V++GE E P VP
Sbjct: 196 VEDLEEDFVVQANLT-------QKGESSGVSNGELEFSVRREVRERESDEPVAENPRVPR 248
Query: 43 -LEELLADLEL----------------GEDEDEEDFM 62
++EL LEL GE+E+EEDFM
Sbjct: 249 QIDELFDQLELNEYGSDSDGDGYIAEDGEEEEEEDFM 285
>At3g56570 putative protein
Length = 531
Score = 25.0 bits (53), Expect = 7.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 7 EENPDLRFNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDEEDFMM 63
E+ P + + S Q+ E P E EE EE + E GE+E+E M+
Sbjct: 229 EDEPSSKISSSPEQSFEEVPGENTDDEAKEEEEEEEEEEEGEEEEEGEEEEENSSML 285
>At3g17170 unknown protein
Length = 314
Score = 25.0 bits (53), Expect = 7.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 26 PSEMASVTDGEEL-PSVPLEELLADLELGEDEDEED 60
P E SV G+E EE+ D + GE EDEED
Sbjct: 222 PPEFHSVRAGDEYYDDDEEEEIEEDEDEGEGEDEED 257
>At2g38440 unknown protein
Length = 1421
Score = 25.0 bits (53), Expect = 7.2
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 2 FLNDLEENPDLRFNLSLYQNIEF--QPSEMASVTDGEELPSVPLEELLADLELGEDED 57
F+++ E P L +I+F +++ S D ELP++P +E + D G +E+
Sbjct: 1128 FVHNASEKP-------LQSSIQFPTMSTDLNSQYDSSELPTIPYQECIED--FGSEEN 1176
>At2g14140 putative transposase of FARE2.8 (cds1)
Length = 783
Score = 25.0 bits (53), Expect = 7.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 15 NLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADL-ELGEDEDEEDFMM 63
NLS ++ + P+E S EE VP EE + + E E ED+E +++
Sbjct: 567 NLSDDEDNDTAPTEKESQPQKEETTEVPKEENVEEHDEHDETEDQEAYVI 616
>At5g63320 putative protein
Length = 569
Score = 24.6 bits (52), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 37 ELPSVPLEELLADLELGEDEDEED 60
E S PLE L +++ EDEDEE+
Sbjct: 210 ESNSNPLEHLGLYMKMDEDEDEEE 233
>At5g14270 kinase - like protein
Length = 688
Score = 24.6 bits (52), Expect = 9.4
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 1 QFLNDLEENPDLRFNLSLYQNIEF----QPSEMASVTDGEELPSV-----------PLEE 45
Q L ++E++ +L N +++E + + + E+ P V PLE+
Sbjct: 597 QALMEMEQSVELNENAKFLEDLELLKTVDTDHLTNTIEEEDGPDVGLRSFSFGGSNPLEQ 656
Query: 46 LLADLELGEDEDEED 60
L ++ EDE+E D
Sbjct: 657 LGLFMKQDEDEEEAD 671
>At3g01860 unknown protein
Length = 159
Score = 24.6 bits (52), Expect = 9.4
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 4/43 (9%)
Query: 20 QNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDEEDFM 62
+N + E AS TD ++ L EL + + EDE+EED++
Sbjct: 48 ENKHGEEEEEASPTDNKKR----LLELFKETQDEEDEEEEDYV 86
>At1g50090 branched-chain amino acid aminotransferase, putative
Length = 367
Score = 24.6 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 35 GEELPSVPLEELLADLELGEDEDEEDFMM 63
GEE S L +L ++++G ED++ +MM
Sbjct: 324 GEEAFSTKLHLILTNIQMGVVEDKKGWMM 352
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.310 0.135 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,669,377
Number of Sequences: 26719
Number of extensions: 63702
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 15
length of query: 63
length of database: 11,318,596
effective HSP length: 39
effective length of query: 24
effective length of database: 10,276,555
effective search space: 246637320
effective search space used: 246637320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0106.7.5