BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.15
(120 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25340 unknown protein 31 0.086
At3g16120 putative dynein light chain protein 30 0.25
At4g24100 unknown protein 28 0.56
At1g76470 putative cinnamoyl-CoA reductase 28 0.73
At3g16540 putative serine protease 28 0.95
At2g31800 putative protein kinase 28 0.95
At5g42020 luminal binding protein (dbj|BAA13948.1) 27 1.6
At1g05990 calcium-binding protein, putative 27 1.6
At5g51320 putative protein 27 2.1
At5g28540 luminal binding protein 27 2.1
At3g09370 MYB family like transcription factor 27 2.1
At3g21530 unknown protein 26 2.8
At3g07770 putative heat-shock protein 26 2.8
At3g05710 putative syntaxin protein, AtSNAP33 26 2.8
At5g38200 unknown protein 26 3.6
At5g10500 unknown protein 26 3.6
At2g34300 unknown protein 26 3.6
At2g11540 pseudogene 26 3.6
At5g41790 myosin heavy chain-like protein 25 4.7
At3g57780 putative protein 25 4.7
>At5g25340 unknown protein
Length = 208
Score = 31.2 bits (69), Expect = 0.086
Identities = 11/41 (26%), Positives = 29/41 (69%), Gaps = 1/41 (2%)
Query: 14 EGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMN 54
+GD + ++R++E+D+ DD++ G ++ +D+D+ + ++ N
Sbjct: 131 DGDEV-LNRIEEIDDSWDDLERGGLVMYKDDDMETSSNESN 170
>At3g16120 putative dynein light chain protein
Length = 93
Score = 29.6 bits (65), Expect = 0.25
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 22 RVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQNRQVFDWAQLVGKN 78
+V+E D V + I + DL + D ++ +H+ +F R W +VG N
Sbjct: 7 KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTN 63
>At4g24100 unknown protein
Length = 709
Score = 28.5 bits (62), Expect = 0.56
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 29 EVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQNR-QVFDWAQLVGKNNDFVVIMIR 87
+V D+K +L +D+DL + +D L K +R QVFD QL
Sbjct: 357 DVRDLKTQASLLIDDDDLEESKEDEEILCAQFNKVNDREQVFDSLQL------------- 403
Query: 88 SDYGTLNGKESLT 100
Y +NGKE ++
Sbjct: 404 --YENMNGKEKVS 414
>At1g76470 putative cinnamoyl-CoA reductase
Length = 317
Score = 28.1 bits (61), Expect = 0.73
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 19 KVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHV 59
K D ++++DN ++K + L +DE L +AID + + H+
Sbjct: 42 KNDHLRKLDNASKNLKLFKADLFDDEGLFSAIDGCSGVFHI 82
>At3g16540 putative serine protease
Length = 555
Score = 27.7 bits (60), Expect = 0.95
Identities = 27/115 (23%), Positives = 53/115 (45%), Gaps = 11/115 (9%)
Query: 7 EKVDNVAEGDHIKVDRVKE--VDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQ 64
+ ++NV +H K+ + N+++ IL++D D++ AID + + + FQ
Sbjct: 308 QSLENVQIRNHFKMSHEMTGILINKINSSSGAYKILRKD-DIILAIDGVPIGNDEKVPFQ 366
Query: 65 NRQVFDWAQLVGKNNDFVVIMIRSDYGTLNGKESLTLGCEHGGKFKPYKGKFDIR 119
N++ D++ LV +++ NGKE E+ KP K F ++
Sbjct: 367 NKRRIDFSYLVSMKKPGEKALVKV---LRNGKE-----YEYNISLKPVKPNFTVQ 413
>At2g31800 putative protein kinase
Length = 489
Score = 27.7 bits (60), Expect = 0.95
Identities = 21/71 (29%), Positives = 32/71 (44%), Gaps = 3/71 (4%)
Query: 43 DEDLMNAIDDMNALSHVVMKFQNRQVFDWAQLVGKNNDFVVIMIRSDYGTLNGKESLTLG 102
D+DL D +NA H + F+ + + Q VG V +MI S+Y + K L
Sbjct: 213 DKDLYKDSDTINAFKHELTLFEKVRHPNVVQFVGAVTQNVPMMIVSEY---HPKGDLGSY 269
Query: 103 CEHGGKFKPYK 113
+ G+ P K
Sbjct: 270 LQKKGRLSPAK 280
>At5g42020 luminal binding protein (dbj|BAA13948.1)
Length = 668
Score = 26.9 bits (58), Expect = 1.6
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 6/79 (7%)
Query: 4 VLIEKVDNVAEGDHIKVDRVKEV----DNEVDDM-KEWGHILKEDEDLMNAIDDMNALSH 58
+L K ++ A G K+ E E+D M KE +ED+ + ID NAL
Sbjct: 516 ILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALET 575
Query: 59 VVMKFQNRQVFDWAQLVGK 77
V +N QV D +L K
Sbjct: 576 YVYNMKN-QVSDKDKLADK 593
>At1g05990 calcium-binding protein, putative
Length = 150
Score = 26.9 bits (58), Expect = 1.6
Identities = 19/81 (23%), Positives = 40/81 (48%), Gaps = 9/81 (11%)
Query: 5 LIEKVDNVAEGDHIKVDRVKEV--------DNEVDDMKEWGHILKEDEDLMNAIDDMNAL 56
+IEK+D +G + +D E+ D E +DMKE ++ ++ D +D++ A+
Sbjct: 45 MIEKIDVNGDGC-VDIDEFGELYKTIMDEEDEEEEDMKEAFNVFDQNGDGFITVDELKAV 103
Query: 57 SHVVMKFQNRQVFDWAQLVGK 77
+ Q + + D +++ K
Sbjct: 104 LSSLGLKQGKTLDDCKKMIKK 124
>At5g51320 putative protein
Length = 114
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 70 DWAQLVGKNNDFVVIMIRSDYGTLNGK 96
D+A L GK DF V+ ++ D+ L GK
Sbjct: 87 DFAVLTGKR-DFAVLTVKRDFAVLTGK 112
>At5g28540 luminal binding protein
Length = 669
Score = 26.6 bits (57), Expect = 2.1
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 6/79 (7%)
Query: 4 VLIEKVDNVAEGDHIKVDRVKEV----DNEVDDM-KEWGHILKEDEDLMNAIDDMNALSH 58
+L K ++ A G K+ E E+D M KE +ED+ + ID NAL
Sbjct: 516 ILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALET 575
Query: 59 VVMKFQNRQVFDWAQLVGK 77
V +N QV D +L K
Sbjct: 576 YVYNMKN-QVNDKDKLADK 593
>At3g09370 MYB family like transcription factor
Length = 505
Score = 26.6 bits (57), Expect = 2.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 19 KVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQNRQV 68
K D KEVD +V+D K+ I + N S F++RQ+
Sbjct: 425 KTDEAKEVDQKVNDGKDSSEIQNNGSNAYNLSPPYRIRSKRTAVFKSRQL 474
>At3g21530 unknown protein
Length = 458
Score = 26.2 bits (56), Expect = 2.8
Identities = 12/43 (27%), Positives = 22/43 (50%), Gaps = 3/43 (6%)
Query: 6 IEKVDNVAEGD---HIKVDRVKEVDNEVDDMKEWGHILKEDED 45
++++D + GD HI + + +D + W HI+K ED
Sbjct: 286 MKQIDAITRGDESPHILLGGLNSLDGSDYSIARWNHIVKYYED 328
>At3g07770 putative heat-shock protein
Length = 803
Score = 26.2 bits (56), Expect = 2.8
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 5 LIEKVDNVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQ 64
L+E +D VA V +K K++ I KED DL N D N +K +
Sbjct: 587 LVEPIDEVA------VQSLKAYKE-----KDFVDISKEDLDLGNMSGDKNEEKEAAVKKE 635
Query: 65 NRQVFDW 71
Q DW
Sbjct: 636 FGQTCDW 642
>At3g05710 putative syntaxin protein, AtSNAP33
Length = 330
Score = 26.2 bits (56), Expect = 2.8
Identities = 13/58 (22%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
Query: 8 KVDNVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQN 65
++ + + + I ++R KE+ V+ + E I+K+ L+ ID + + QN
Sbjct: 226 QMSKIKKSEEISIEREKEIQQVVESVSELAQIMKDLSALV--IDQGTIVDRIDYNIQN 281
>At5g38200 unknown protein
Length = 431
Score = 25.8 bits (55), Expect = 3.6
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 11 NVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQNRQVFD 70
NVA G + +D KE+ N++ + + HI D+ + HVV +N +
Sbjct: 140 NVACGGTLYLDLEKELTNKLPEERRTMHI---------DYDNYDGHRHVVRIVENSPLHS 190
Query: 71 WAQ--LVGKNNDFVV 83
W + L G+N + +V
Sbjct: 191 WFKDSLDGENMEILV 205
>At5g10500 unknown protein
Length = 848
Score = 25.8 bits (55), Expect = 3.6
Identities = 14/52 (26%), Positives = 29/52 (54%), Gaps = 2/52 (3%)
Query: 3 HVLIEKVDNVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMN 54
H L E++D++ I+ + + ++ DD + G LKE E+ +N + D++
Sbjct: 361 HRLREEIDDLKA--QIRALQKENNSSQTDDNMDMGKKLKEMEEKVNGVKDID 410
>At2g34300 unknown protein
Length = 770
Score = 25.8 bits (55), Expect = 3.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 7 EKVDNVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMN 54
E DN +GD K VKEV +E D+ + E+ N +D N
Sbjct: 122 ESDDNNGDGDGEKEKNVKEVGSESDETTQKEKTQLEESTEENKSEDGN 169
>At2g11540 pseudogene
Length = 280
Score = 25.8 bits (55), Expect = 3.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 10 DNVAEGDHIKVDRVKEVDNEVDDMKEWGHILKE 42
D V + DH+++D+V + D VD + G + E
Sbjct: 114 DQVNDEDHLELDQVADPDQVVDGDSDKGDVYVE 146
>At5g41790 myosin heavy chain-like protein
Length = 1305
Score = 25.4 bits (54), Expect = 4.7
Identities = 13/43 (30%), Positives = 25/43 (57%)
Query: 2 SHVLIEKVDNVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDE 44
S +L + V E +H K KE++ + +++K+ G ++EDE
Sbjct: 1205 SKILWTATNWVIERNHEKEKMNKEIEKKDEEIKKLGGKVREDE 1247
>At3g57780 putative protein
Length = 670
Score = 25.4 bits (54), Expect = 4.7
Identities = 17/57 (29%), Positives = 28/57 (48%), Gaps = 16/57 (28%)
Query: 7 EKVDNVAEGDH---IKVDRVKEV-------------DNEVDDMKEWGHILKEDEDLM 47
EK D+V+ + + VD+V EV +NE D+KE +EDE+++
Sbjct: 108 EKTDSVSSPETCEGVNVDKVVEVWDDASNGGLSGGSENEAGDVKEKNENFEEDEEML 164
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.139 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,903,270
Number of Sequences: 26719
Number of extensions: 118060
Number of successful extensions: 390
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 41
length of query: 120
length of database: 11,318,596
effective HSP length: 96
effective length of query: 24
effective length of database: 8,753,572
effective search space: 210085728
effective search space used: 210085728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0106.15