BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0103.9
         (705 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g07640 putative athila transposon protein                          271  1e-72
At1g37060 Athila retroelment ORF 1, putative                          266  4e-71
At3g32890 Athila ORF 1, putative                                      229  3e-60
At3g31340 Athila ORF 1, putative                                      220  2e-57
At3g32000 unknown protein                                             219  5e-57
At4g08050                                                             212  5e-55
At4g07600                                                             156  3e-38
At2g14040 putative retroelement pol polyprotein                       154  1e-37
At2g07480 F9A16.15                                                    154  2e-37
At3g31500 hypothetical protein                                        152  6e-37
At4g07370                                                             149  5e-36
At2g10620 putative Athila retroelement ORF1 protein                   149  5e-36
At1g36560 hypothetical protein                                        149  7e-36
At3g30630 hypothetical protein                                        147  3e-35
At4g07660 putative athila transposon protein                          139  7e-33
At4g03790 putative athila-like protein                                135  1e-31
At4g07780 putative athila transposon protein                          129  6e-30
At1g37070 hypothetical protein                                        129  6e-30
At4g03850 putative transposon protein                                 121  2e-27
At4g08490 putative athila-like protein                                120  2e-27

>At4g07640 putative athila transposon protein
          Length = 866

 Score =  271 bits (692), Expect = 1e-72
 Identities = 204/628 (32%), Positives = 310/628 (48%), Gaps = 35/628 (5%)

Query: 79  NAELVRLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVF 138
           +A+  +L+LFPFSL D A  W  + P  SI TW+D  K F  K F      +L+N+I  F
Sbjct: 82  SADGFKLRLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGF 141

Query: 139 KQEDTENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALS 198
            Q+  E+  EA ERFK    +CP H  T    +   Y G+    R  L+ A++G F+   
Sbjct: 142 SQKTGESFCEAWERFKGYTNQCPHHGFTKASMLSTLYRGVLPRIRMLLDTASNGNFQNKD 201

Query: 199 AQAGWNLINKMAESAVNSTNDRQNRRGVLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKI 258
            + GW L++ +A+S  N  N+  +R      ++ D+     K L+ ++  I    Q    
Sbjct: 202 VEEGWELVDNLAQSDGN-YNEDCDRTVRDTADSDDKHRKEIKALNDKLDRILLNQQKHVH 260

Query: 259 SNVDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNN 318
             VD        G       G    EEV  + N+Q+      YN    N+PN S+R  N 
Sbjct: 261 FLVDDEQFQVQDGE------GNQL-EEVSYINNNQSG--YKGYNNFKTNNPNLSYRSTNI 311

Query: 319 FNQGGN----NQRQYSNQRFQSQNSG--PQQNQDQGSGN-----GKKSLEELMENFINKA 367
            N         Q+Q  N+ F   N G  P+Q Q QG+       G K+L    E      
Sbjct: 312 ANPQDQVYPPQQQQVQNKPFVPYNQGFVPKQ-QFQGNYQPPPPPGGKALPTREEPKTVTE 370

Query: 368 DTSFKNHEAAIKSLETQVG-----QMAKQMSERPPGMFPSDTVINPKENCSAITLRNIEP 422
           D+  ++ E    SLE         Q   Q  E+P  +     +  P +N +  T R I P
Sbjct: 371 DSEDQDGEDL--SLEKDQADKPHEQPLDQSLEQPLDLSLEQPLDLPLDNVTRPTTRPIFP 428

Query: 423 LGENKKKQKEKEEEKRKVELENKFTKVLFPPFPTNIAKRRLEKQFSKFISMFKKLRVELP 482
                  +    + K KV +   +   L  PFP    K   +K  + F    K++ + +P
Sbjct: 429 AASATAPKPITVKNKEKVFVPPPYKPEL--PFPGRHKKALADKYRAMFAKNIKEVELRIP 486

Query: 483 FSEVLEKMPQYAKFMKEILSKKRRLSEENEIIELTEECSAILQRKLPPKR-KDPGSFTLP 541
             + L  +P   KF+K+++ +  R+ E   ++ L+  CSAI+Q+K+ PK+  DPGSFTLP
Sbjct: 487 LVDALALIPDSHKFLKDLIVE--RIQEVQGMVVLSHGCSAIIQKKIIPKKLSDPGSFTLP 544

Query: 542 VNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVL 601
            + G     R LCDLG+SV+LM LS+ +RL   + K + + L LADRS+  P G++++  
Sbjct: 545 CSLGPLAFNRCLCDLGASVSLMALSVAKRLGFTQYKSSNISLILADRSVRIPHGLLKNFG 604

Query: 602 VRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGNGTISLRVA-DEKITFTI 660
           + +G  E P DFV+++MDE+ K PLILGRPFLAT+ A I+V  G I L +  D ++TF +
Sbjct: 605 ITIGAVEIPTDFVVLEMDEEPKDPLILGRPFLATAGAMIDVKKGKIDLSLGKDFRMTFDV 664

Query: 661 FDLKPKPVEKNDVFLVEMMDEWSDEKLK 688
            D   KP  +  +F ++ MD+ +DE L+
Sbjct: 665 KDAMKKPTIEGQLFWIKEMDQLADELLE 692


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  266 bits (679), Expect = 4e-71
 Identities = 207/702 (29%), Positives = 317/702 (44%), Gaps = 132/702 (18%)

Query: 84  RLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQEDT 143
           +L+LFPFSL D A +W  S PQGSIT+W D  K F  K F  +   +L+NDI  F Q + 
Sbjct: 87  KLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNN 146

Query: 144 ENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGW 203
           E  +EA ERFK    +CP H + L                   + A++G F     + GW
Sbjct: 147 ETFYEAWERFKGYQTQCPHHEMLL-------------------DTASNGNFLNKDVEDGW 187

Query: 204 NLINKMAESAVNSTNDRQNRRGVLEIEAYDRMVA----SNKQLSQQMTTIQRQFQAAKIS 259
            ++  +A+S  N   D            YDR +     S+++  ++M  +  +     + 
Sbjct: 188 EVVENLAQSDGNYNED------------YDRSIRTSSDSDEKHRREMKAMNDKLDKLLLM 235

Query: 260 NVDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQN-- 317
               IH          ++  T   EEV  + N     Y+  +N   +NHPN S+R  N  
Sbjct: 236 QQKHIHFLGDDETLQVQDGETLQLEEVSYVQNQGG--YNKGFNNFKQNHPNLSYRSTNVA 293

Query: 318 -------------------NFNQG----------GNNQRQYSNQRFQSQNSGPQ------ 342
                               +NQG          GN Q+Q     F  Q   P       
Sbjct: 294 NRQDQVYPSQQQNQPKPFVPYNQGQGYVPKQQYQGNYQQQLPPPGFTQQQQQPALTTPDS 353

Query: 343 ------QNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERP 396
                 Q   QG   G   L + M    NK D S+ +    +++L +++  +  Q     
Sbjct: 354 DLKNMLQQILQGQATGAMDLSKRMAEIHNKVDCSYNDINIKVEALTSKIRYIEGQTGSTA 413

Query: 397 PGMF--PSD-TVINPKENCSAITLRNIEPL-----------------GENKKKQKEKEEE 436
              F  PS  ++ N KE   AITLR+ + L                 GE+  +     E+
Sbjct: 414 APKFTGPSGKSMSNSKEYAHAITLRSGKELPTKESPNQNTEDSLDQDGEDFCQNGNSAEK 473

Query: 437 KRKVELENKFTKVLFP----------------------------PFPTNIAKRRLEKQFS 468
             +  + ++ T+ L P                            PFP    K  ++K  +
Sbjct: 474 AIEEPILHQPTRPLAPAASPLVEKPAAAKTKENVFIPPPYKPPLPFPGRFKKVMIQKYKA 533

Query: 469 KFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEENEIIELTEECSAILQRKL 528
                 K L V +P  + L  +P   K++K+++++  R+ E   ++ L+ ECSAI+Q+K+
Sbjct: 534 LLEKQLKNLEVTMPLVDCLALIPDSNKYVKDMITE--RIKEVQGMVVLSHECSAIIQQKI 591

Query: 529 PPKRK-DPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLAD 587
            PK+  DPGSFTLP   G     + LCDLG+SV+LMPL + ++L   + KP  + L LAD
Sbjct: 592 IPKKLGDPGSFTLPCALGPLAFSKCLCDLGASVSLMPLPVAKKLGFNKYKPCNISLILAD 651

Query: 588 RSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGNGTI 647
           RS+    G++ED+ V +G  E P DFV+++MDE+ K PLILGRPFLA ++A I+V  G I
Sbjct: 652 RSVRISHGLLEDLPVMIGVVEVPTDFVVLEMDEEPKDPLILGRPFLARARAIIDVKKGKI 711

Query: 648 SLRVA-DEKITFTIFDLKPKPVEKNDVFLVEMMDEWSDEKLK 688
            L +  D K+TF I +   KP  + ++F +E MD  +D+ L+
Sbjct: 712 DLNLGRDLKMTFDITNTMKKPTIEGNIFWIEEMDMLADKMLE 753


>At3g32890 Athila ORF 1, putative
          Length = 755

 Score =  229 bits (585), Expect = 3e-60
 Identities = 187/637 (29%), Positives = 289/637 (45%), Gaps = 84/637 (13%)

Query: 84  RLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQEDT 143
           +L+LFPFSL D A  W  + P  SITTW+D  K F  K F      +L+N+I  F Q+  
Sbjct: 40  KLRLFPFSLGDKAHIWEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTR 99

Query: 144 ENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGW 203
           E+  EA ERFK    +CP H  T    +   Y G+    R  L+ +++G F+    + GW
Sbjct: 100 ESFCEAWERFKGYTNQCPHHGFTKASLLSTLYRGVLLRIRMLLDTSSNGNFQNKDVEEGW 159

Query: 204 NLINKMAESAVNSTNDRQNRRGVLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKISNVDS 263
            L+  +A+S  N  N+  +R  +  +     M+  ++Q         +QFQ  +    + 
Sbjct: 160 ELVENLAQSDGN-YNEDCDRNEIKALNDKLDMILLSQQKHVHFLVDDKQFQ-VQYGEGNQ 217

Query: 264 IHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFN--- 320
           +                   EEV  + N+Q       YN    N+PN S+R  N  N   
Sbjct: 218 L-------------------EEVSYIINNQGG--YKGYNNFKTNNPNLSYRSTNVANPPQ 256

Query: 321 --QGGN------NQRQYSNQRFQSQNSGP-------QQNQDQGSGNG--KKSLEELME-- 361
             QG N      NQ     Q+FQ     P       QQNQ   + +   K+ +++L+E  
Sbjct: 257 QQQGQNKPFVPYNQGFVPKQQFQGNYQPPPPPGFTTQQNQGPAAPDAEMKQMVQQLLEVQ 316

Query: 362 ------------NFINKADTSFKNHEAAIKSLETQV----GQMAKQMSERPPGMFPSDTV 405
                          +K D S+ +  A +++L T+V    GQ A   + +  G+ P  ++
Sbjct: 317 ASSSMEIAKKLSELHHKLDCSYNDMNAKVEALNTKVRYLEGQSASTSTPKVTGL-PGKSI 375

Query: 406 INPKE--NCSAITLRNIEPL-----------------GENKKKQKEKEEEKRKVELENKF 446
            NPKE     AIT+ +   L                 GE   +   +E+      +  +F
Sbjct: 376 QNPKEYATAHAITICHDRELPTRHVPDFITGDSDVQDGEASTQSTSEEKAAIIERMVKRF 435

Query: 447 TKVLFP--PFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKK 504
                P    P    K  +EK  S       ++   +P  EVL  +P   K ++ ++ ++
Sbjct: 436 KPTPLPSSALPWTFRKAWMEKYKSVASKQLDEIEAVMPLIEVLNLIPDPHKDVRNLILER 495

Query: 505 RRLSEENEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMP 564
            ++  +++         A  +R +  K +DPGSFTLP + G       LCDLG+SV+LMP
Sbjct: 496 IKMYHDSDDESDATPSRASDKRIVQEKLEDPGSFTLPCSIGELAFSDCLCDLGASVSLMP 555

Query: 565 LSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKI 624
           LS+  RL   + KP  + L LADRS   P+G+++D+ V +   E P DFV++DM+ + K 
Sbjct: 556 LSVARRLEFIQYKPCDLTLILADRSFRKPFGMLKDLPVMINGVEVPTDFVVLDMEVEHKD 615

Query: 625 PLILGRPFLATSQAKINVGNGTISLRVADE-KITFTI 660
           PLILGRP LA+  A I+V  G ISL +    K+ F I
Sbjct: 616 PLILGRPLLASVGAVIDVREGKISLNLGKHIKLQFGI 652


>At3g31340 Athila ORF 1, putative
          Length = 781

 Score =  220 bits (561), Expect = 2e-57
 Identities = 174/611 (28%), Positives = 280/611 (45%), Gaps = 71/611 (11%)

Query: 81  ELVRLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQ 140
           ++++ +LF FSL D A  WL S    ++ +WED    F  + F ++    L+N I  F+Q
Sbjct: 132 DIIKCRLFIFSLADNAHRWLKSLDPINLRSWEDYKAAFLGQYFTQSRTAILRNKISSFQQ 191

Query: 141 EDTENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQ 200
             TE+  EA ERFK   R+CP H  +    +  FY G+  + +  L+ A++G+F   +  
Sbjct: 192 GGTESFPEAWERFKDYYRECPHHGFSRATLISTFYQGVDKAYKMALDTASNGDFMTKTET 251

Query: 201 AGWNLINKMAESAVNST--NDRQNRRGVLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKI 258
               LI  +A S +N     DR NR G  E++   ++   + ++ Q +   Q+     + 
Sbjct: 252 EATKLIKNLAASNINHNVDYDRSNRGGGGELK---QLAELSVKVEQLLRRDQKVINFCED 308

Query: 259 SNVDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNN 318
           S+   +H         S +C      E+  +   +       + +      NFS     +
Sbjct: 309 SSKGMVH------QEYSGDCSEDLQAEMNFVNGIRYIQLRQAHKV-----QNFS---PTD 354

Query: 319 FNQGGNNQRQYSNQRFQSQNSGPQQNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAI 378
           F   G  +           NS  QQ  + G       +   +++  N  +  F    + +
Sbjct: 355 FRIKGTIR----------DNSNLQQILE-GLKKNAADINVKVDSMYNDLNVKFATLSSHV 403

Query: 379 KSLETQVGQMAKQMSERPPGMF-----PSDTVINPKENCSAITLRNIEPLGENKKKQKEK 433
           K+LE QV Q+    S RP G       P +  +  +   +A+    +E L E+K  +   
Sbjct: 404 KTLENQVSQVVSA-SMRPAGAHSGKEEPREIDVAKQVETNAVV---VETLVEDKIVE--- 456

Query: 434 EEEKRKVELENKFTKVLFPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQY 493
           ++E    E      K+ FP     I  R+ E+                 ++ ++E   Q 
Sbjct: 457 DDEPLSEEPPPYVPKLPFPGRERQIQSRKREE-----------------YALLVESQRQ- 498

Query: 494 AKFMKEILSKKRRLSEENEII---ELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQV 550
                    K+ +L++  E++   E+   CSAI    +P K  DPGSF LP   G S   
Sbjct: 499 --------QKEAQLTDVVEVLAGKEMVSTCSAIPPATIPEKLGDPGSFVLPCRIGKSAFE 550

Query: 551 RALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFP 610
           R LCDLG+ VNLMPLSM +RL +   KP+ + L LADRS+  P G+ E+V VRVG+F  P
Sbjct: 551 RCLCDLGAGVNLMPLSMSKRLGITNFKPSRISLILADRSVRFPVGLAENVHVRVGDFYIP 610

Query: 611 VDFVIIDMDEDSKIPLILGRPFLATSQAKINVGNGTISLRVADEKITFTIFDLKPKPVEK 670
            DFV++++D++   PL LGRPFL T  A I+V   TI+L++ D  + F +   +  P  +
Sbjct: 611 TDFVVLELDKEPHDPLTLGRPFLNTVGAIIDVRRSTINLQIGDFALEFDMKGTRKNPTIE 670

Query: 671 NDVFLVEMMDE 681
              F V+  DE
Sbjct: 671 GHAFSVDTNDE 681


>At3g32000 unknown protein
          Length = 839

 Score =  219 bits (557), Expect = 5e-57
 Identities = 179/631 (28%), Positives = 280/631 (44%), Gaps = 67/631 (10%)

Query: 84  RLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQEDT 143
           +L+LFPFSL D A  W  + P  SITT +D  K F  K F      +L+N+I  F Q+  
Sbjct: 87  KLRLFPFSLGDKALIWEMNLPHDSITTRDDCKKAFLSKFFSNDRTARLRNEISGFSQKIG 146

Query: 144 ENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGW 203
           E+  EA ERFK    +CP H  T    +   Y G+    R  L+ A++G F+    + GW
Sbjct: 147 ESFCEAWERFKDYTNQCPHHGFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGW 206

Query: 204 NLINKMAESAVNSTNDRQNR-RGVLEIEAYDR--MVASNKQLSQQMTTIQRQFQAAKISN 260
            L++ +A+S  N   D     RG  + +   R  + A N +L + + + Q+         
Sbjct: 207 ELVDNLAQSDGNYNEDCDRTVRGTADSDDKHRKEIKALNDKLDRILLSQQKHVDFLVDDE 266

Query: 261 VDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFN 320
              +  G           G    EEV  + N+Q       YN    N+PN S+R  N  N
Sbjct: 267 QYQVQDGE----------GNQL-EEVSYINNNQGG--YKGYNNFKTNNPNLSYRSTNVAN 313

Query: 321 QGGN----NQRQYSNQRFQSQNSG--------------------PQQNQD---------- 346
                    Q+Q  N+ F   N G                    PQQNQ           
Sbjct: 314 PQDQVYPPQQQQGQNKPFVPYNQGFVPKQQFQGNYQQPPPPGFAPQQNQGPATPDAEMKQ 373

Query: 347 ------QGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQV----GQMAKQMSERP 396
                 QG  +    + + +    +K D S+ +  A +++L T+V    GQ A   + + 
Sbjct: 374 MVQQLLQGQASSSMEIAKKLSELHHKLDCSYNDLNAKVEALNTKVRYLEGQSASTSAPKV 433

Query: 397 PGMFPSDTVINPKENCSAITLRNIE---PLGENKKKQKEKEEEKRKVE-LENKFTKVLFP 452
            G+   D+ +   E  + + +  +E     G     Q   EE+   +E +  +F     P
Sbjct: 434 TGLPGKDSDVQEGEAFTQVEVSVVEFNHSAGSRHLIQSTSEEKAAIIERMVKRFKPTPLP 493

Query: 453 P--FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEE 510
               P    K  +E+  S       ++   +P  EVL  +P   K ++ ++ ++ ++  +
Sbjct: 494 SRALPWTFRKSWMERYKSVAAKQPDEIEAVMPLMEVLNLIPDPHKDVRNLILERIKMYHD 553

Query: 511 NEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFER 570
           ++         A  +R +  K +DPGSF+LP + G       LCDLG+ V+LMP S+  R
Sbjct: 554 SDDESDATPSRAADKRIVQEKLEDPGSFSLPCSIGEFAFSDCLCDLGAFVSLMPCSVARR 613

Query: 571 LNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGR 630
           L   + KP  + L LADRS   P+G+++D+ V +   E P DFV++DM+ + K PLILGR
Sbjct: 614 LEFIQYKPCDLTLILADRSSRKPFGMLKDLPVMINGVEVPTDFVVLDMEVEHKDPLILGR 673

Query: 631 PFLATSQAKINVGNGTISLRVADE-KITFTI 660
           PFLA+  A I+V  G I L +    K+ F I
Sbjct: 674 PFLASVGAVIDVREGKIGLNLGKHIKLQFGI 704


>At4g08050
          Length = 1428

 Score =  212 bits (540), Expect = 5e-55
 Identities = 176/625 (28%), Positives = 275/625 (43%), Gaps = 59/625 (9%)

Query: 84  RLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQEDT 143
           +L+LFPFSL D A  W  +    SITTW+D  K F  K F      +L+N+I  F Q+  
Sbjct: 87  KLRLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTG 146

Query: 144 ENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGW 203
           E+  EA ERFK    +CP H+ T    +   Y G+    R  L+ A++G F+    + GW
Sbjct: 147 ESFCEAWERFKGYTNQCPHHSFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGW 206

Query: 204 NLINKMAESAVNSTNDRQNR-RGVLEIEAYDR--MVASNKQLSQQMTTIQRQFQAAKISN 260
            L+  +A+S  N   D     RG  + +   R  + A N +L + + + Q+         
Sbjct: 207 ELVENLAQSDGNYNEDCDRTVRGTADSDDKHRKEIKALNDKLDRILLSQQKHVHFLVDDE 266

Query: 261 VDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFN 320
              +  G   G    E    Y  ++ +     QN P+   YN G+     F    Q    
Sbjct: 267 QYQVQDGE--GNQLEE---VYLPQQKQ----GQNKPFV-LYNQGFVPKQQFQGNYQPPPP 316

Query: 321 QGGNNQRQYSNQRFQSQNSGPQQNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKS 380
            G   Q+   +    ++     +   QG  +    + + +    +K D S+ +  A +++
Sbjct: 317 PGFVTQQNQCHAAPDAKMKQMVKQLLQGQASSSMEIAKKLSELHHKLDCSYNDLNAKVEA 376

Query: 381 LETQV----GQMAKQMSERPPGMFPSDTVINPKENCSA-------------------ITL 417
           L T+V    GQ A   S +   + P  ++ NPKE  +A                   IT 
Sbjct: 377 LNTKVRYLEGQSASTFSPKVTRL-PGKSIQNPKEYATAHAITICHDRELPTRHVLDLITR 435

Query: 418 RNIEPLGENKKK------------------QKEKEEEKRKVE-LENKFTKVLFP--PFPT 456
            N    GE   +                  Q   EE+   +E +  +F     P    P 
Sbjct: 436 DNDVQEGEASTQVEASVVEFNHSAGSRHLTQSTSEEKAAIIERMVKRFKPTPLPLRALPW 495

Query: 457 NIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEENEIIEL 516
              K  +E+  S       ++   +P  EVL  +    K ++ ++ ++ ++  +++    
Sbjct: 496 TFRKAWMERYKSVAAKQLDEIEAVMPLMEVLNLILDPHKVVRNLILERIKMYHDSDDESD 555

Query: 517 TEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGEL 576
                A  +R +  K +DPGSFTLP + G       LCDLG+SVNLMPLSM  RL   + 
Sbjct: 556 ATPSRAADKRIVQEKLEDPGSFTLPCSIGEFAFSDCLCDLGASVNLMPLSMARRLEFIQY 615

Query: 577 KPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATS 636
           KP  + L LADRS    +G+++D+ V +   E P DFV++DM+ + K PLILGRPFLA+ 
Sbjct: 616 KPCDLTLILADRSSRKHFGMLKDLPVMINGVEVPTDFVVLDMEVEHKDPLILGRPFLASV 675

Query: 637 QAKINVGNGTISLRVADE-KITFTI 660
            A I+V  G I L +    K+ F I
Sbjct: 676 GAVIDVKEGKIGLNLGKHIKLQFNI 700


>At4g07600
          Length = 630

 Score =  156 bits (395), Expect = 3e-38
 Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 4/221 (1%)

Query: 470 FISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEENEIIELTEECSAILQRKLP 529
           F    K++ + +P  + L  +    KF+K+++ +  R+ E   ++ L+ ECSAI+Q+K+ 
Sbjct: 2   FAKNIKEVELRIPLVDALALILDTHKFLKDLIVE--RIQEVQGMVVLSHECSAIIQKKIV 59

Query: 530 PKR-KDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADR 588
           PK+  DPGSFTLP   G     R LCDLG+ V+ MPLS+ +RL   + K   + L LADR
Sbjct: 60  PKKLSDPGSFTLPCFLGTVAFNRCLCDLGALVSPMPLSIAKRLGFTQYKSCNISLILADR 119

Query: 589 SIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGNGTIS 648
           S+    G+++++ +R+G  E   DFVI++MDE+ K PLIL RPFLAT+ A I+V  G I 
Sbjct: 120 SVRISHGLLKNLPIRIGAAEISTDFVILEMDEEPKDPLILRRPFLATAGAMIDVKKGKID 179

Query: 649 LRVA-DEKITFTIFDLKPKPVEKNDVFLVEMMDEWSDEKLK 688
           L +  D ++TF I D   KP  +  +F +E MD+ +DE L+
Sbjct: 180 LNLGKDFRMTFDIKDAMKKPNIEGQLFWIEEMDQLADELLE 220


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score =  154 bits (390), Expect = 1e-37
 Identities = 101/256 (39%), Positives = 130/256 (50%), Gaps = 42/256 (16%)

Query: 438 RKVELENKFTKVLFPP------FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMP 491
           RK  LE K  K + PP      FP    K + EK++S F              E++ ++ 
Sbjct: 4   RKQTLEEKAKKTVLPPYVPKLPFPGRQRKIQREKEYSLF-------------DEIMRQLQ 50

Query: 492 QYAKFMKEILSKKRRLSEENEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVR 551
           +Y+                        ECSAILQ  +P KR+DPGSF LP   G     R
Sbjct: 51  RYSP-----------------------ECSAILQNVIPVKREDPGSFVLPSRIGEYTFDR 87

Query: 552 ALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPV 611
            LCDLG+ V+LMP S+ +RL      PT M L L DRSI  P GV EDV VRVG F  P 
Sbjct: 88  CLCDLGAGVSLMPFSVAKRLGDTNFTPTKMSLVLGDRSISFPVGVAEDVQVRVGNFYIPT 147

Query: 612 DFVIIDMDEDSKIPLILGRPFLATSQAKINVGNGTISLRVADEKITFTIFDLKPKPVEKN 671
           DFVII++DE+ +  LILGRPFL    A I+V    I+LR+ D    F +  +  KP  + 
Sbjct: 148 DFVIIELDEEPRHRLILGRPFLNIVAALIDVRKSKINLRIGDIVQEFNMERIMSKPTTEC 207

Query: 672 DVFLVEMMDEWSDEKL 687
             F V++MDE  +E L
Sbjct: 208 QTFWVDIMDELVNELL 223


>At2g07480 F9A16.15
          Length = 1012

 Score =  154 bits (389), Expect = 2e-37
 Identities = 149/548 (27%), Positives = 228/548 (41%), Gaps = 94/548 (17%)

Query: 81  ELVRLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQ 140
           E  +L+LFPFSL D A  W  + P  SI TW+D  K F  K F  +   +L+++I  F Q
Sbjct: 79  ESFKLRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLRSEISGFNQ 138

Query: 141 EDTENLHEALERFKKLLRKCPQH-NLTLGVQVERFYDGLADSARSNLEAAASGEFEALSA 199
           +++E+  EA ERFK    +CP H +L     + R         R  L+ A++G       
Sbjct: 139 KNSESFSEAWERFKGYTTQCPHHESLPPQYSILR----CLPKIRMLLDTASNGNILNKDV 194

Query: 200 QAGWNLINKMAES--AVNSTNDRQNRRGVLEIEAYDRMVAS-NKQLSQQMTTIQRQFQAA 256
             GW L+  +A+S    N   DR NR      + + + + + N ++ + +   QR     
Sbjct: 195 AEGWELVENLAQSHRNYNEDYDRTNRGSSDSEDKHKKEIKTLNDRIDKLVLAQQRNVYYI 254

Query: 257 KISNVDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRN----HPNFS 312
               +  +  G                EEV  L N         YN G+ N    HPN S
Sbjct: 255 TEEELTQLQDGE-----------NLTIEEVSYLQN------QGGYNKGFNNYKPPHPNLS 297

Query: 313 WREQN----------------------NFNQGGNNQRQYSNQRFQSQNSGPQ-------- 342
           +R  N                       +NQG N ++ +    F  Q   P         
Sbjct: 298 YRSNNVANPQDQVYPPQNQPTQAKPFVPYNQGYNQKQNFGPPGFTQQPQQPSAQDSEMKT 357

Query: 343 --QNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQV----GQMAKQMSERP 396
             Q   QG  +   ++++ +     + D S+ +    I +L T+V    G +A   + + 
Sbjct: 358 LPQQLVQGHASCSMTMDKKLAELTTRIDCSYNDLNIKIDALNTRVKSMEGHIASTSAPKH 417

Query: 397 PGMFPSDTVINPKENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLF----- 451
            G  P   V NPKE   AI+  N     ++  ++ E    + + E+E  F   L      
Sbjct: 418 LGQLPGKAVQNPKEYAHAISTVNTSATEDSGIQEGEVLRPRSRQEIELDFFARLVERAHD 477

Query: 452 --------------PPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFM 497
                         P FP  IA+   E  F K   MF K        E+ EK+P      
Sbjct: 478 PSNPIHIPSPYVPKPAFPERIAQID-EMIFQKHKMMFIKC-----IKELEEKVP-LVDTP 530

Query: 498 KEILSKKRRLSEENEIIELTEECSAILQRKLPPKR-KDPGSFTLPVNFGASKQVRALCDL 556
           KE++ +  R  E  +I+EL+ ECSAI+Q+K+ PK+  DPGSFTLP +        +LCDL
Sbjct: 531 KEMIME--RPQEAQQIVELSFECSAIIQKKVIPKKLGDPGSFTLPCSLAPLVFNNSLCDL 588

Query: 557 GSSVNLMP 564
           G+S++  P
Sbjct: 589 GASMDEEP 596


>At3g31500 hypothetical protein
          Length = 591

 Score =  152 bits (384), Expect = 6e-37
 Identities = 141/527 (26%), Positives = 236/527 (44%), Gaps = 62/527 (11%)

Query: 186 LEAAASGEFEALSAQAGWNLINKMAESAVNST--NDRQNRRGVLEIEAYDRMVASNKQLS 243
           L+ A++GEF   +      LI  +A S  N     DR NR G  E + +  + A  +QL 
Sbjct: 3   LDTASNGEFMTKTETEATKLIENLAGSNSNHNVDYDRSNRGGGGESKQFAELSAKVEQL- 61

Query: 244 QQMTTIQRQFQAAKISNVDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNL 303
             M   Q+     + S+   +H    G      +    F   V   GN QN   +N  N 
Sbjct: 62  --MRRDQKSVNFCEDSSKGMVHQEFSGDGSEDLQAEINF---VNGYGNYQNGGSTNVENP 116

Query: 304 GWRNHPNFSWREQNNFNQGG-NNQRQYSNQRFQSQNSGPQQNQDQGSGNGKKSLEELMEN 362
             + +P  +  +   F   G  N+  Y  Q FQ   +G       G    K  +++++E+
Sbjct: 117 QDQVYPTQAGSQGQKFQPYGFQNKGNYQGQ-FQPP-AGTGHASSFGDNEMKLMMQQVLED 174

Query: 363 --------------FINKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSDTVINP 408
                           N  +  F    + +K+LE QV Q+    S RP G          
Sbjct: 175 QKKNAADINVKVDSMYNDLNGKFATLSSHVKTLENQVSQIVSA-SMRPDGTHSGKVKPKG 233

Query: 409 KENCSAITLRN-----------------IEPLGENKKKQKEKEEEKRKVELENKFTKVLF 451
           KE C AI ++                  +E L E+K  +   ++E   VE      K+  
Sbjct: 234 KEQCYAIMIQEELREIVVAKQVETNVVVVETLVEDKIVE---DDEPLSVEPPPYVPKL-- 288

Query: 452 PPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEEN 511
            PFP    + + +K++++F  + K+L V LPF +++  +P Y  ++K ILS KR + E  
Sbjct: 289 -PFPGRERQIQRQKEYARFDEIMKQLYVRLPFLQLVLHVPSYRSYLKYILSNKRSIEEGV 347

Query: 512 EIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERL 571
           ++I   EE + +++ +   +++     T  V   A K++   C       + P ++ ++L
Sbjct: 348 KLISKGEEHAQLVESQ---RQQKEAQLTNVVEMLAGKEMVNTCSA-----IPPATIPKKL 399

Query: 572 NVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRP 631
            +   KP+ + L LADRS+  P G+ E+V  RVG F  P +FV++++D++   PL LGRP
Sbjct: 400 GITNFKPSRISLILADRSVQFPMGLAENVHARVGNFYIPTNFVVLELDKEPHDPLNLGRP 459

Query: 632 FLATSQAKINVGNGTISLRVADEKITFTIFDLKPKP-----VEKNDV 673
           FL T +A I+V   TI+L++ D  + F I   +  P     +E +DV
Sbjct: 460 FLNTVEAIIDVRRSTINLQIGDYALEFDIKGTRKNPTIEDCIELSDV 506


>At4g07370
          Length = 531

 Score =  149 bits (376), Expect = 5e-36
 Identities = 111/376 (29%), Positives = 182/376 (47%), Gaps = 58/376 (15%)

Query: 347 QGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQV----GQMAKQMSERPPGMFPS 402
           QG  +    + + +     K D S+ +  A +++L ++V    G+ A   S +  G+ P 
Sbjct: 11  QGQVSSSIEIAKKISELHQKLDCSYNDLNAKVEALNSKVRYLEGESASTSSPKVTGL-PG 69

Query: 403 DTVINPKENC-SAITLRNIEPLGENKKKQKEKEEEKRKV--ELENKFTKVLFP------- 452
            ++ NPKE    ++T  +    GE+    +++ ++  +V   + ++ T+   P       
Sbjct: 70  KSIQNPKEERPKSVTEDSAYQDGEDFSLNEDQVDKPTEVLEPILDRDTRPTNPLTSSAAL 129

Query: 453 ---------------------PFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMP 491
                                PFP    K   +K  + F    KK+ + +P ++ L  +P
Sbjct: 130 KLVAAKNNEIAFIPPPYKPPLPFPGRHKKEVEDKYRAMFAKNIKKVELRIPLADALTHIP 189

Query: 492 QYAKFMKEILSKKRRLSEENEIIELTEECSAILQRK-LPPKRKDPGSFTLPVNFGASKQV 550
              KF+K+++ +  R+ E  +   L+ ECSAI+Q   +  K  DPGSFTLP + G+    
Sbjct: 190 DSQKFLKDLIME--RIQEVQKTTVLSHECSAIIQENDVSEKLGDPGSFTLPCSLGSLTFN 247

Query: 551 RALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFP 610
           + LCDLG SVNLMPLS+                  A RS+  P G++ED+ +++   E P
Sbjct: 248 KCLCDLGPSVNLMPLSV------------------AKRSVRLPHGLLEDLPIKIRNVEVP 289

Query: 611 VDFVIIDMDEDSKIPLILGRPFLATSQAKINVGNGTISLRVADE-KITFTIFDLKPKPVE 669
            DFV+++MDE+ K PLILGRPFLAT    I+V  G I L +    ++ F I D   KP  
Sbjct: 290 TDFVVLNMDEEPKDPLILGRPFLATVGVIIDVKQGKIDLNLGKNFEMKFDINDAMKKPTI 349

Query: 670 KNDVFLVEMMDEWSDE 685
           +   FLV+ +D  + E
Sbjct: 350 EEQTFLVKEVDRLAGE 365


>At2g10620 putative Athila retroelement ORF1 protein
          Length = 451

 Score =  149 bits (376), Expect = 5e-36
 Identities = 91/248 (36%), Positives = 142/248 (56%), Gaps = 12/248 (4%)

Query: 438 RKVELENKFTKVLFPP-------FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKM 490
           + V ++NK  KV  PP       FP    K    K    F    K++ +++P  + L  +
Sbjct: 192 KPVVVKNK-EKVFVPPPYKPHPSFPGRHKKALAHKYRVMFAKNIKEVELQIPLVDALALI 250

Query: 491 PQYAKFMKEILSKKRRLSEENEIIELTEECSAILQRKLPPKR-KDPGSFTLPVNFGASKQ 549
               KF+K+++ +  R+ E   ++ L++ECSAI+Q+K+  K+  DPGSFTLP + G    
Sbjct: 251 MDSHKFLKDLIVE--RIQELQGMVVLSDECSAIIQKKIIHKKLSDPGSFTLPCSLGPLAF 308

Query: 550 VRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEF 609
            + LCDLG+S +LMPLS+ +RL   + K   + L LADRS+  P   +E++ +R+   E 
Sbjct: 309 NKCLCDLGASASLMPLSVTKRLGFTQYKSCNISLILADRSVRIPHDFLENIPIRIRAVEI 368

Query: 610 PVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGNGTISLRVA-DEKITFTIFDLKPKPV 668
           P DFV+++MDE+ K  LILGRPFL T  A I +  G I+L +  D ++TF + D   KP 
Sbjct: 369 PTDFVVLEMDEEPKDHLILGRPFLTTVGAMIYIKKGKINLNLGKDFRMTFDVKDTMKKPT 428

Query: 669 EKNDVFLV 676
            +  + L+
Sbjct: 429 IEGQLLLM 436



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 21/76 (27%), Positives = 36/76 (46%), Gaps = 4/76 (5%)

Query: 348 GSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQV----GQMAKQMSERPPGMFPSD 403
           G  +G   + + +    NK D S+ +    +++L T+V    G  A   +++     P  
Sbjct: 11  GQASGSMEIAKKIFELHNKLDYSYNDLNVKVETLSTKVQYLEGNSASTSAQKQTSQLPGK 70

Query: 404 TVINPKENCSAITLRN 419
            + NPKE   AITLR+
Sbjct: 71  AIQNPKEYAHAITLRS 86


>At1g36560 hypothetical protein
          Length = 524

 Score =  149 bits (375), Expect = 7e-36
 Identities = 92/249 (36%), Positives = 138/249 (54%), Gaps = 6/249 (2%)

Query: 455 PTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEENEII 514
           P    K  + +  S       ++   +P  EVL  +P   K ++ ++ +  ++  +++  
Sbjct: 42  PWTFRKAWMARYKSVAAKQLNEIEAVMPLMEVLNLIPNPHKDVRNLILEWIKMYHDSDDE 101

Query: 515 ELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVG 574
                  A  +R +  K +DPGSFTLP + G+    + LCDLG+SV+LMPLS+ +RL   
Sbjct: 102 SDATPSRAADKRIVQEKLEDPGSFTLPCSLGSLTFNKCLCDLGASVSLMPLSVAKRLGFN 161

Query: 575 ELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLA 634
           + K   + L LAD S+  P GV+ED+ +++G+ E P DF+I++MDE+ K PLILGRPFLA
Sbjct: 162 KYKYCNISLILADGSVRQPHGVLEDLPIKIGKVEVPTDFIILNMDEEPKDPLILGRPFLA 221

Query: 635 TSQAKINVGNGTISLRVA-DEKITFTIFDLKPKPVEKNDVFLVEMMDEWSDEKLK*FFLK 693
           T+ A I+V  G I L +  D K+ F I D   KP  +   FLVE  D   DE      L 
Sbjct: 222 TAGAIIDVKQGKIDLNMGKDFKMKFDINDAMKKPTIEGQTFLVEETDRLVDE-----LLV 276

Query: 694 EKADASNKK 702
           E  +A+N K
Sbjct: 277 ELKEANNSK 285


>At3g30630 hypothetical protein
          Length = 785

 Score =  147 bits (370), Expect = 3e-35
 Identities = 146/566 (25%), Positives = 236/566 (40%), Gaps = 70/566 (12%)

Query: 84  RLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQEDT 143
           +L+LFPF L D A  W  + P  SI TW D  K F  K F      +L N+I  F Q+  
Sbjct: 87  KLRLFPFFLGDKAHIWEKNMPHDSIITWVDCKKAFLAKFFSNAKTARLINEISSFSQKTG 146

Query: 144 ENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGW 203
           E+  EA ERFK    +CP H       +   Y G+    R  L+ A++  F+    + GW
Sbjct: 147 ESFCEAWERFKGYTNQCPHHGFKKASLLSTLYRGVLPRIRMLLDTASNENFQNKDVEEGW 206

Query: 204 NLINKMAESAVNSTND-RQNRRGVLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKISNVD 262
            LI  +A+S  N   D  +  RG  +         S+ +  +++  +  +     +S   
Sbjct: 207 ELIENLAQSNDNYNKDCERTIRGTTD---------SDDKHRKEIKALNDKQDKILLSQQK 257

Query: 263 SIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQG 322
            +H       +  ++      EEV  + N       N +     N+PN S+R  N  N  
Sbjct: 258 HVHFLVDDEQYQVQDGEGNQLEEVSYINNQSGYKGYNNFK---TNNPNLSYRSTNIANP- 313

Query: 323 GNNQRQYSNQRFQSQNSGPQQ--------NQDQG----SGNGKKSLEELM-ENFINKADT 369
               + Y  QR Q+ +   QQ         Q QG      N K+  ++L+ E   +  D 
Sbjct: 314 --QDQVYPPQRQQAISGNYQQQPPPRFAPQQHQGPPAPDANMKQMAQQLLQEQASSSMDC 371

Query: 370 SFKNHEAAIKSLETQV----GQMAKQMSERPPGMFPSDTVINPKE--NCSAITLRNIEPL 423
            + +  A +++L T+V    GQ A   + +  G+ P   + N KE    +AIT+ +   L
Sbjct: 372 RYNDLNAKVEALNTKVRYLEGQSASTSAPKVTGL-PGKPIQNQKEYATVNAITICHDREL 430

Query: 424 ----------------GENKKKQKEKEEEKRKVE-LENKFTKVLFP--PFPTNIAKRRLE 464
                           G +   Q   EE+   +E +  +F     P    P    K  +E
Sbjct: 431 PTRHVKVSVVEFNHSAGSHHLIQSTSEEKVAIIERMAKRFKPTPLPSRALPWKFRKAWME 490

Query: 465 KQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEENEIIELTEECS--- 521
           +  S       ++ V +P  EVL  +    K ++ ++ ++ ++  +++     +EC    
Sbjct: 491 RYKSVAEKQLNEIEVVMPLMEVLNVIHDPHKDVRNLILERIKMYHDSD-----DECDANP 545

Query: 522 --AILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFE-----RLNVG 574
             A  +R +  K +DPGS TLP + G       LCDLG+SV+LMPLS+       +L   
Sbjct: 546 SRAADKRIVQEKLEDPGSCTLPCSIGELAFSNCLCDLGASVSLMPLSVARSGSAYKLRCA 605

Query: 575 ELKPTMMMLQLADRSIVAPWGVVEDV 600
            LK       + +R  +A  G V DV
Sbjct: 606 RLKEEHKDHLILERPFLASVGAVIDV 631


>At4g07660 putative athila transposon protein
          Length = 724

 Score =  139 bits (349), Expect = 7e-33
 Identities = 76/169 (44%), Positives = 109/169 (63%), Gaps = 2/169 (1%)

Query: 522 AILQRKLPPKRK-DPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTM 580
           AI Q+K+ PK+  DPGSFTLP + G     R LCDLG+ V+LMPLS+ +RL   + K   
Sbjct: 3   AITQKKIVPKKLIDPGSFTLPCSLGPLAFKRCLCDLGALVSLMPLSVAKRLGFTQYKSCN 62

Query: 581 MMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKI 640
           + L LADRS+  P  + E++ +R+G  + P DFV+++MDE+ K PLILGRPFLAT+ A  
Sbjct: 63  ISLILADRSVRIPHSLFENLPIRIGAVDIPTDFVVLEMDEEPKDPLILGRPFLATAGAMN 122

Query: 641 NVGNGTISLRVADE-KITFTIFDLKPKPVEKNDVFLVEMMDEWSDEKLK 688
           +V  G I L +    ++TF + D   KP  K  +F +E +D+ +DE L+
Sbjct: 123 DVKKGKIDLNLGKYCRMTFDVKDAMKKPTIKGQLFWIEEIDQLADELLE 171


>At4g03790 putative athila-like protein
          Length = 1064

 Score =  135 bits (339), Expect = 1e-31
 Identities = 108/383 (28%), Positives = 172/383 (44%), Gaps = 55/383 (14%)

Query: 323 GNNQRQYSNQRFQSQNSGPQ----------QNQDQGSGNGKKSLEELMENFINKADTSFK 372
           GN Q Q  +     +N GP           Q   QG  +    + + +    +K D ++ 
Sbjct: 146 GNYQPQPPHGFAPQENQGPTAPDAEMKQMVQQLLQGQASSSMEIPKKLSELHHKLDCNYN 205

Query: 373 NHEAAIKSLETQV----GQMAKQMSERPPGMFPSDTVINPKEN----------------- 411
           +  A +++L T+V    GQ A     +  G+ P  ++ NPKE                  
Sbjct: 206 DLNAKVEALNTKVRYLEGQSASTSVPKVTGL-PGKSIQNPKEYATAHAITICHDRELPTR 264

Query: 412 -----------------CSAITLRNIE---PLGENKKKQKEKEEEKRKVE-LENKFTKVL 450
                            C+ I +  IE     G +   Q   EE+   +E +  +F    
Sbjct: 265 PVLDLIIGESDVQEGEACTQIEVSVIEFNHSAGSHHLIQSTSEEKAAIIERMVKRFKPTP 324

Query: 451 FPP--FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLS 508
            P    P    K  +E+  S       ++   +P  EVL  +P + K ++ ++ +K ++ 
Sbjct: 325 LPSRALPWTFRKAWIERYKSVAAKQLDEIEAVMPLMEVLNLIPDHHKDVRNLILEKIKMY 384

Query: 509 EENEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMF 568
            +++          + +R +  K +DPGSFTLP + G       LCDLG+SV+LMPLSM 
Sbjct: 385 HDSDDESDATPSRVVDKRIVQEKLEDPGSFTLPCSIGELAFSDFLCDLGASVSLMPLSMG 444

Query: 569 ERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLIL 628
            RL     KP  + L LADRS   P+G+++D+ V +   E P DFV+++M+   K PLIL
Sbjct: 445 RRLEFIHYKPCDLTLILADRSSRKPFGMLKDLPVMINGVEVPTDFVVLNMEVKHKDPLIL 504

Query: 629 GRPFLATSQAKINVGNGTISLRV 651
           GRPFLA+  A I++  G ISL +
Sbjct: 505 GRPFLASVGAVIDIREGKISLNL 527



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 20/55 (36%), Positives = 27/55 (48%)

Query: 84  RLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVF 138
           +L+LFPFSL D A  W  +    SITTW    + F +   P   L+  +   L F
Sbjct: 87  KLRLFPFSLGDKAHIWEKNLSHDSITTWMIARRLFYQSSSPMPELQDSEMRCLAF 141


>At4g07780 putative athila transposon protein
          Length = 446

 Score =  129 bits (324), Expect = 6e-30
 Identities = 78/209 (37%), Positives = 115/209 (54%), Gaps = 12/209 (5%)

Query: 498 KEILSKKRRLSEENEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLG 557
           K+   +K +  +  E+I          ++ +  K  DPGSFTLP + G     R LCDLG
Sbjct: 247 KKFKIEKLKKDQNQEMISRVSTQETYKKKFIQEKLDDPGSFTLPCSLGPLTFNRCLCDLG 306

Query: 558 SSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIID 617
           +SV+LMPLS  +RL + E K   + L L D S+  P G++ ++ V++G  E P DFV++D
Sbjct: 307 ASVSLMPLSTAKRLGIVEYKFCNLALLLPDGSVAHPHGLIGNLPVKIGNDEIPTDFVVLD 366

Query: 618 MDEDSKIPLILGRPFLATSQAKINVGNGTISLRVAD-EKITFTIFDLKPKPVEKNDVFLV 676
            DE+ K PLILGRPFLA++ A I+VGNG I L +    ++ F I     K   +   F +
Sbjct: 367 TDEEGKDPLILGRPFLASAGAVIDVGNGKIDLNLEKCIEMRFNISKASGKSTTRGQSFGI 426

Query: 677 EMMDEWSDEKLK*FFLKEKADASNKKKKE 705
           ++MD           + E+ +A  K KKE
Sbjct: 427 QVMD-----------VDEETEAVKKIKKE 444



 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 43/123 (34%), Positives = 59/123 (47%)

Query: 81  ELVRLQLFPFSLRDTAEEWLNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQ 140
           ++ +L+LFPFSL D A  W  + P  SIT+W+D  K F  K F      +L+N+I  F Q
Sbjct: 92  DMFKLRLFPFSLGDKAHHWKKTLPPDSITSWDDCKKDFLAKFFSNARTARLRNEISGFTQ 151

Query: 141 EDTENLHEALERFKKLLRKCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQ 200
           ++ E   EA ERFK     CP H       +   Y G     R  L+  ++G F      
Sbjct: 152 KNNETFFEASERFKSYTTYCPHHGFKKASLLRTLYRGALPKIRMLLDTTSNGNFLNNDVA 211

Query: 201 AGW 203
            GW
Sbjct: 212 EGW 214


>At1g37070 hypothetical protein
          Length = 590

 Score =  129 bits (324), Expect = 6e-30
 Identities = 108/350 (30%), Positives = 155/350 (43%), Gaps = 28/350 (8%)

Query: 332 QRFQSQNSGPQQNQDQGSGNGKKS-LEELMENFINKADTSFKNHEAAIKSLETQVGQMAK 390
           + FQ Q  G  Q  +      K + L   +    N  +  F+   + IK +E+Q    A 
Sbjct: 80  EHFQMQEGGNDQTVELCYIQNKGAELHNKIGCSYNDLNVKFEALNSKIKYVESQ---FAS 136

Query: 391 QMSERPPGMFPSDTVINPKENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVL 450
             +   P   P   V NPK+  +   +   +       +Q    EE    E     T++ 
Sbjct: 137 TSALEHPQQLPGKAVQNPKDYATGNAITIHQEDESPPSRQTPHTEENMIQEGGGDSTQIA 196

Query: 451 FPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEE 510
            P            +QF   I     L    P            KF  E L K     + 
Sbjct: 197 APA----------TQQFIWTIKHTPLLNTHHPGK----------KFKIEKLKK----DQN 232

Query: 511 NEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFER 570
            E+I          ++ +  K  DPGSFTLP + G     R LCDLG+SV+LMPLS  +R
Sbjct: 233 QEMISSASTQETYKKKIIQEKLDDPGSFTLPCSLGPLTFNRCLCDLGASVSLMPLSTAKR 292

Query: 571 LNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGR 630
           L + E K   + L LAD S+  P G++E++ V++   E P DFV++D+DE  K PLILGR
Sbjct: 293 LGIMEYKFCNLALLLADGSVAHPHGLIENLPVKIENVEIPTDFVVLDVDEKGKDPLILGR 352

Query: 631 PFLATSQAKINVGNGTISLRVADEKITFTIFDLKPKPVEKNDVFLVEMMD 680
           PFLA++ A I+V NG I+L +   K+ F I +   K       F V+ MD
Sbjct: 353 PFLASAGAVIDVRNGKINLNLEGIKMKFDIRESSWKSTTGVQNFGVQNMD 402


>At4g03850 putative transposon protein
          Length = 334

 Score =  121 bits (303), Expect = 2e-27
 Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 2/210 (0%)

Query: 463 LEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEENEIIELTEECSA 522
           +E+  S       ++   +P  EVL  +    K ++ ++ ++ ++  ++          A
Sbjct: 1   MERYKSVAAKQLDEIEAVMPLIEVLNLIHDPHKNVRNLILERIKMYHDSNDDSDATPSRA 60

Query: 523 ILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMM 582
             +R +  K  DPGSFTLP + G       LCDLG+SV+LMPLSM  RL   + +P  + 
Sbjct: 61  ADKRIVQEKFGDPGSFTLPCSIGELAFSDCLCDLGASVSLMPLSMARRLEFIQYRPCDLT 120

Query: 583 LQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINV 642
           L LADR+   P+G+++D+ V +   E P+DFV++DM+ + K PLILGRPFLA+  A I+V
Sbjct: 121 LILADRASRKPFGMLKDLPVMINGVEVPIDFVVLDMEVEHKDPLILGRPFLASVGAVIDV 180

Query: 643 GNGTISLRVADEKITFTIFDLKPKPVEKND 672
             G ISL +   K     FD+   P E  +
Sbjct: 181 REGKISLNLG--KHIMLQFDINKTPQESKE 208


>At4g08490 putative athila-like protein
          Length = 587

 Score =  120 bits (302), Expect = 2e-27
 Identities = 67/161 (41%), Positives = 98/161 (60%), Gaps = 1/161 (0%)

Query: 509 EENEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMF 568
           E+ + +++ E    I       K  DPGSF L  +   S+  R+LCDLGSS+NLM  S+ 
Sbjct: 233 EKAQRVDIAEYIRTITPGLTTEKLPDPGSFVLDCSISTSRFSRSLCDLGSSINLMSKSVV 292

Query: 569 ERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLIL 628
           ERL + + +PT + L  ADRS     G++EDV V+VG    P DFV++D +++ K PLIL
Sbjct: 293 ERLGMTQYRPTRITLLFADRSKRISEGILEDVPVKVGNSIIPADFVVLDYEKEPKNPLIL 352

Query: 629 GRPFLATSQAKINVGNGTISLRVADEKITFTIFDLK-PKPV 668
           GR FLAT+ A+ +V  G I L+V D ++ F +  L+  KP+
Sbjct: 353 GRAFLATAAARFDVKRGRIFLKVCDSEMEFGMDSLELTKPI 393


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,307,670
Number of Sequences: 26719
Number of extensions: 679701
Number of successful extensions: 3581
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 3283
Number of HSP's gapped (non-prelim): 262
length of query: 705
length of database: 11,318,596
effective HSP length: 106
effective length of query: 599
effective length of database: 8,486,382
effective search space: 5083342818
effective search space used: 5083342818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)