BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.5
(275 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560 DNA-binding protein 50 2e-06
At3g42860 unknown protein (At3g42860) 49 2e-06
At4g36020 glycine-rich protein 43 2e-04
At2g17870 putative glycine-rich, zinc-finger DNA-binding protein 42 4e-04
At3g43590 putative protein 41 6e-04
At3g53500 splicing factor - like protein 37 0.011
At5g52380 unknown protein 37 0.015
At5g36240 putative protein 37 0.015
At2g37340 unknown protein 36 0.020
At4g04560 putative transposon protein 34 0.074
At4g04420 putative transposon protein 33 0.13
At2g21060 glycine-rich protein (AtGRP2) 33 0.17
At2g12880 pseudogene 33 0.17
At5g66730 zinc finger protein 33 0.22
At3g26420 RNA-binding protein, putative 33 0.22
At2g07080 putative gag-protease polyprotein 32 0.28
At5g04280 RNA-binding protein-like 32 0.48
At3g02820 CCHC-type zinc finger - like protein 32 0.48
At3g21010 unknown protein 31 0.63
At1g60650 putative RNA-binding protein 31 0.82
>At1g75560 DNA-binding protein
Length = 257
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 163 RMAEATREHHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLA 222
RM +H +R ++ ++ GHFA CS C C GH+A
Sbjct: 28 RMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHFARDCSNVSV-CNNCGLPGHIA 86
Query: 223 VNCKTKESLCFNCNQPGHFSQDC 245
C T ES C+NC +PGH + +C
Sbjct: 87 AEC-TAESRCWNCREPGHVASNC 108
Score = 47.4 bits (111), Expect = 8e-06
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 199 GHFANKCSVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDC 245
GH A +C+ RC+ C GH+A NC + E +C +C + GH ++DC
Sbjct: 83 GHIAAECTAES-RCWNCREPGHVASNC-SNEGICHSCGKSGHRARDC 127
Score = 44.7 bits (104), Expect = 6e-05
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 197 KFGHFANKCSVTGWR------CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDC 245
K GH A CS + R C C ++GHLA +C T + C NC GH ++DC
Sbjct: 119 KSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC-TNDKACKNCRTSGHIARDC 172
Score = 43.9 bits (102), Expect = 9e-05
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 196 RKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKES------LCFNCNQPGHFSQDC 245
R+ GH A+ CS G C C + GH A +C +S LC NC + GH + DC
Sbjct: 99 REPGHVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 39.3 bits (90), Expect = 0.002
Identities = 16/36 (44%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Query: 212 CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMA 247
C C R GH A +C + S+C NC PGH + +C A
Sbjct: 57 CNNCKRPGHFARDC-SNVSVCNNCGLPGHIAAECTA 91
>At3g42860 unknown protein (At3g42860)
Length = 372
Score = 49.3 bits (116), Expect = 2e-06
Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 11/64 (17%)
Query: 208 TGWRCFKCNREGHLAVNCKTKESL-----------CFNCNQPGHFSQDCMALRGESSGNV 256
TG C+KC +EGH A +C + CF C +PGH+S+DC A G
Sbjct: 235 TGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEP 294
Query: 257 GKGK 260
G+ K
Sbjct: 295 GQMK 298
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 30/107 (28%)
Query: 184 RGMNRTGAGGPMRKFG---HFANKCSV-----------TGWRCFKCNREGHLAVNC---- 225
RG G P K G H+A C+V CFKC + GH + +C
Sbjct: 228 RGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS 287
Query: 226 ------------KTKESLCFNCNQPGHFSQDCMALRGESSGNVGKGK 260
+ C+ C + GH+S+DC G+ K
Sbjct: 288 GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAK 334
Score = 37.0 bits (84), Expect = 0.011
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 18/71 (25%)
Query: 191 AGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESL----------------CFN 234
+G P + G K S + C+KC ++GH + +C + S C+
Sbjct: 287 SGNPKYEPGQM--KSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYK 344
Query: 235 CNQPGHFSQDC 245
C + GH+S+DC
Sbjct: 345 CGKAGHWSRDC 355
>At4g36020 glycine-rich protein
Length = 299
Score = 42.7 bits (99), Expect = 2e-04
Identities = 22/79 (27%), Positives = 38/79 (47%), Gaps = 15/79 (18%)
Query: 185 GMNRTGAGGPMRKF-----GHFANKCSVT---GWRCFKCNREGHLAVNCKTK-------E 229
G R+G GG + GH A C+ C++C GHLA +C + +
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGND 279
Query: 230 SLCFNCNQPGHFSQDCMAL 248
+ C+ C + GHF+++C ++
Sbjct: 280 NACYKCGKEGHFARECSSV 298
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/90 (28%), Positives = 34/90 (36%), Gaps = 17/90 (18%)
Query: 183 QRGMNRTGAGG--PMRKFGHFANKCSVT------------GWRCFKCNREGHLAVNCKTK 228
QRG + G G GHFA C+ C+ C GH+A +C TK
Sbjct: 189 QRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATK 248
Query: 229 ESL---CFNCNQPGHFSQDCMALRGESSGN 255
C+ C GH ++DC GN
Sbjct: 249 RQPSRGCYQCGGSGHLARDCDQRGSGGGGN 278
Score = 34.3 bits (77), Expect = 0.074
Identities = 24/89 (26%), Positives = 32/89 (34%), Gaps = 27/89 (30%)
Query: 185 GMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNC------------KTKESLC 232
G+ G GG R G G C+ C GH A +C K C
Sbjct: 116 GIGGGGGGGERRSRG---------GEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGC 166
Query: 233 FNCNQPGHFSQDCMALRGESSGNVGKGKQ 261
+ C GH ++DC + +VG G Q
Sbjct: 167 YTCGDVGHVARDC------TQKSVGNGDQ 189
Score = 34.3 bits (77), Expect = 0.074
Identities = 16/63 (25%), Positives = 24/63 (37%), Gaps = 12/63 (19%)
Query: 209 GWRCFKCNREGHLAVNC------------KTKESLCFNCNQPGHFSQDCMALRGESSGNV 256
G C+ C GH++ +C C+NC GHF++DC +
Sbjct: 99 GSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGA 158
Query: 257 GKG 259
KG
Sbjct: 159 TKG 161
Score = 32.0 bits (71), Expect = 0.37
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGW-------RCFKCNREGHLAV 223
H R AT RG + G G H A C G C+KC +EGH A
Sbjct: 240 HIARDCATKRQPSRGCYQCGGSG------HLARDCDQRGSGGGGNDNACYKCGKEGHFAR 293
Query: 224 NCKT 227
C +
Sbjct: 294 ECSS 297
>At2g17870 putative glycine-rich, zinc-finger DNA-binding protein
Length = 301
Score = 42.0 bits (97), Expect = 4e-04
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 203 NKCSVTGWRCFKCNREGHLAVNC----------------KTKESLCFNCNQPGHFSQDCM 246
N +G CF C GH+A +C E C+ C GHF++DC
Sbjct: 87 NSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCR 146
Query: 247 ALRGESSGNVGKG 259
G +SG G G
Sbjct: 147 QSGGGNSGGGGGG 159
Score = 41.2 bits (95), Expect = 6e-04
Identities = 26/87 (29%), Positives = 34/87 (38%), Gaps = 29/87 (33%)
Query: 199 GHFANKCSVTGWR-----------CFKCNREGHLAVNCK---------------TKESLC 232
GHFA C +G C+ C GHLA +C+ + C
Sbjct: 139 GHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGC 198
Query: 233 FNCNQPGHFSQDCMALRGESSGNVGKG 259
+ C GHF++DC R GNVG G
Sbjct: 199 YMCGGVGHFARDC---RQNGGGNVGGG 222
Score = 40.8 bits (94), Expect = 8e-04
Identities = 29/99 (29%), Positives = 35/99 (35%), Gaps = 26/99 (26%)
Query: 185 GMNRTGAGGPMRK----------FGHFANKCSVTGW--------RCFKCNREGHLAVNCK 226
G NR G GG GHFA C G C+ C GH+A C
Sbjct: 181 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCT 240
Query: 227 TK--------ESLCFNCNQPGHFSQDCMALRGESSGNVG 257
+K C+ C GH ++DC SSG G
Sbjct: 241 SKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGG 279
Score = 40.4 bits (93), Expect = 0.001
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 22/89 (24%)
Query: 182 QQRGMNRTGAGGPM----RKFGHFANKCSVT--------GWRCFKCNREGHLAVNCKTKE 229
+Q G G GG GH A C+ G C++C GHLA +C +
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRG 271
Query: 230 S----------LCFNCNQPGHFSQDCMAL 248
S CF C + GHF+++C ++
Sbjct: 272 SGSSGGGGGSNKCFICGKEGHFARECTSV 300
Score = 38.5 bits (88), Expect = 0.004
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 16/77 (20%)
Query: 190 GAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKES-----------LCFNCNQP 238
G+GG + FG + S C+ C GH A +C+ C++C +
Sbjct: 112 GSGG--KSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEV 169
Query: 239 GHFSQDCMALRGESSGN 255
GH ++DC RG S GN
Sbjct: 170 GHLAKDC---RGGSGGN 183
Score = 32.7 bits (73), Expect = 0.22
Identities = 26/106 (24%), Positives = 35/106 (32%), Gaps = 29/106 (27%)
Query: 182 QQRGMNRTGAGGPMR------KFGHFANKC---------------SVTGWRCFKCNREGH 220
Q G N G GG R + GH A C G C+ C GH
Sbjct: 147 QSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGH 206
Query: 221 LAVNCKTKE--------SLCFNCNQPGHFSQDCMALRGESSGNVGK 258
A +C+ S C+ C GH ++ C + G G+
Sbjct: 207 FARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGR 252
Score = 31.2 bits (69), Expect = 0.63
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGKGKQLAPE 265
CFNC + GH ++DC G S G G++ E
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
>At3g43590 putative protein
Length = 551
Score = 41.2 bits (95), Expect = 6e-04
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
Query: 212 CFKCNREGHLAVNC-----------KTKESLCFNCNQPGHFSQDC 245
C++C EGH A C + ++LC+ CN GHF+++C
Sbjct: 327 CYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 33.9 bits (76), Expect = 0.097
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 209 GW-RCFKCNREGHLAVNCKT---KESLCFNCNQPGHFSQDC 245
GW C+ C +GH + NC T + CF C H ++ C
Sbjct: 164 GWVSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQC 204
Score = 32.0 bits (71), Expect = 0.37
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 200 HFANKCSVTGWRCFKCNREGHLAVNCK------TKESLCFNCNQPGH 240
H A +CS G C+ C + GH A +C +K ++C C GH
Sbjct: 199 HGAKQCS-KGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 30.0 bits (66), Expect = 1.4
Identities = 18/76 (23%), Positives = 29/76 (37%), Gaps = 28/76 (36%)
Query: 196 RKFGHFANKCSVTG----WR--CFKCNREGHLAVNC--------------------KTKE 229
+ FGH C G W C++C + GH + C +
Sbjct: 267 KSFGHLC--CVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREA 324
Query: 230 SLCFNCNQPGHFSQDC 245
S C+ C + GHF+++C
Sbjct: 325 SECYRCGEEGHFAREC 340
>At3g53500 splicing factor - like protein
Length = 243
Score = 37.0 bits (84), Expect = 0.011
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 184 RGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKE--SLCFNCNQPGHF 241
RG G+ GP G RCF C +GH A +C + + C+ C + GH
Sbjct: 43 RGSRDNGSRGPPPGSG-----------RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHI 91
Query: 242 SQDC 245
++C
Sbjct: 92 ERNC 95
Score = 28.5 bits (62), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 232 CFNCNQPGHFSQDCMA 247
CFNC GH+++DC A
Sbjct: 60 CFNCGVDGHWARDCTA 75
>At5g52380 unknown protein
Length = 268
Score = 36.6 bits (83), Expect = 0.015
Identities = 15/40 (37%), Positives = 18/40 (44%), Gaps = 6/40 (15%)
Query: 212 CFKCNREGHLAVNCKTK------ESLCFNCNQPGHFSQDC 245
C +C R GH NC K + LC+NC GH C
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 33.1 bits (74), Expect = 0.17
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 209 GWRCFKCNREGHLAVNCKTKES-----LCFNCNQPGHFSQDCMALRGESS 253
G CF C+ + H+A C K +C C + GH ++C ESS
Sbjct: 73 GEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESS 122
Score = 32.3 bits (72), Expect = 0.28
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 196 RKFGHFANKC------SVTGWRCFKCNREGHLAVNCK-------TKESLCFNCNQPGHFS 242
R+ GH C S C+ C GH +C TK + CF C GH S
Sbjct: 105 RRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHIS 164
Query: 243 QDC 245
++C
Sbjct: 165 KNC 167
>At5g36240 putative protein
Length = 254
Score = 36.6 bits (83), Expect = 0.015
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 199 GHFANKCSVTGWRCFK--CNREGHLAVNCKTKES--------LCFNCNQPGHFSQDC 245
GHF ++C + CF+ EG +++N +K + LC+ C GH ++DC
Sbjct: 154 GHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Score = 32.0 bits (71), Expect = 0.37
Identities = 12/39 (30%), Positives = 18/39 (45%), Gaps = 5/39 (12%)
Query: 212 CFKCNREGHLAVNC-----KTKESLCFNCNQPGHFSQDC 245
C++C + GH + C + CF C + GHF C
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 31.6 bits (70), Expect = 0.48
Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 6/58 (10%)
Query: 212 CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGNVGKGKQLAPEERIH 269
CF C REGH C S+CF P S+D +G S +V + EE H
Sbjct: 104 CFICGREGHFEHQCHNSFSVCF----PEDSSED--ECQGPDSSSVRFQENTREEEEGH 155
Score = 28.1 bits (61), Expect = 5.3
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 198 FGHFANKCS-------VTGWRCFKCNREGHLAV----NCKTKESLCFNCNQPGHFSQDC 245
FGH C + +C+ CN GHL + ++ C+ C Q GH C
Sbjct: 34 FGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLGHTGLAC 92
>At2g37340 unknown protein
Length = 249
Score = 36.2 bits (82), Expect = 0.020
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 211 RCFKCNREGHLAVNCKTKE--SLCFNCNQPGHFSQDC 245
RCF C +GH A +C + + C+ C + GH ++C
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 35.4 bits (80), Expect = 0.033
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 199 GHFANKCSVTGWR--CFKCNREGHLAVNCK 226
GH+A C+ W+ C++C GH+ NCK
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCK 96
Score = 28.5 bits (62), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 232 CFNCNQPGHFSQDCMA 247
CFNC GH+++DC A
Sbjct: 60 CFNCGVDGHWARDCTA 75
>At4g04560 putative transposon protein
Length = 590
Score = 34.3 bits (77), Expect = 0.074
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 212 CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGE 251
C+ +G L+ E CF CN+PGH +++C R E
Sbjct: 182 CWMKKNKGVLSQQVGNNERRCFVCNKPGHLAKNCRLRRTE 221
Score = 32.7 bits (73), Expect = 0.22
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 211 RCFKCNREGHLAVNCKTKES 230
RCF CN+ GHLA NC+ + +
Sbjct: 201 RCFVCNKPGHLAKNCRLRRT 220
>At4g04420 putative transposon protein
Length = 1008
Score = 33.5 bits (75), Expect = 0.13
Identities = 14/44 (31%), Positives = 21/44 (46%), Gaps = 3/44 (6%)
Query: 211 RCFKCNREGHLAVNC---KTKESLCFNCNQPGHFSQDCMALRGE 251
+C +C GH+ C K K+ C CN GH DC+ + +
Sbjct: 281 QCHECQGYGHIKAECPSLKRKDLKCSECNGLGHTKFDCVGSKSK 324
Score = 32.0 bits (71), Expect = 0.37
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 200 HFANKCSVTGWRCFKCNREGHLAVNC 225
H+ ++ +VTG+ C+ C R GH+ C
Sbjct: 534 HYQSRRTVTGYECYYCGRHGHIQRYC 559
>At2g21060 glycine-rich protein (AtGRP2)
Length = 201
Score = 33.1 bits (74), Expect = 0.17
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 229 ESLCFNCNQPGHFSQDCMALRGESSGNVGKGK 260
++ CF C +PGH +++C G SG G G+
Sbjct: 135 DNSCFKCGEPGHMARECSQGGGGYSGGGGGGR 166
Score = 32.3 bits (72), Expect = 0.28
Identities = 15/58 (25%), Positives = 21/58 (35%), Gaps = 24/58 (41%)
Query: 212 CFKCNREGHLAVNCKTKES------------------------LCFNCNQPGHFSQDC 245
CFKC GH+A C C++C + GHF++DC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
>At2g12880 pseudogene
Length = 119
Score = 33.1 bits (74), Expect = 0.17
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 212 CFKCNREGHLAVNC------KTKESLCFNCNQPGHFSQDC 245
C+KC + GH A +C T C+ C++ GH S C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGC 75
Score = 31.2 bits (69), Expect = 0.63
Identities = 17/57 (29%), Positives = 22/57 (37%), Gaps = 13/57 (22%)
Query: 197 KFGHFANKCSVTGW------RCFKCNREGHLAVNCKTK-------ESLCFNCNQPGH 240
K GHFA C V C+ C+ EGH + C K + C+ C H
Sbjct: 41 KLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQDH 97
>At5g66730 zinc finger protein
Length = 500
Score = 32.7 bits (73), Expect = 0.22
Identities = 22/79 (27%), Positives = 35/79 (43%), Gaps = 13/79 (16%)
Query: 200 HFANKCSVTGWRCFKCNREGHLAVNCKTKESLC----FNCNQPGHFSQD---------CM 246
HF K W+C KC+++ + + K +C + C+ FS+ C
Sbjct: 127 HFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCD 186
Query: 247 ALRGESSGNVGKGKQLAPE 265
AL ES+ N + K+L PE
Sbjct: 187 ALAEESAKNHTQSKKLYPE 205
>At3g26420 RNA-binding protein, putative
Length = 245
Score = 32.7 bits (73), Expect = 0.22
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGKGKQLAPEERIHAKEGK 274
CF C +PGHF+++C + S G G+ + ++R +K+ +
Sbjct: 120 CFKCGKPGHFARECPS----ESSRDGGGRFSSKDDRYSSKDDR 158
Score = 31.2 bits (69), Expect = 0.63
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 179 AMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWR----CFKCNREGHLAVNCKTKES 230
A Q G R G R G+ ++ +G R CFKC + GH A C ++ S
Sbjct: 83 AQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESS 138
>At2g07080 putative gag-protease polyprotein
Length = 627
Score = 32.3 bits (72), Expect = 0.28
Identities = 21/88 (23%), Positives = 35/88 (38%), Gaps = 7/88 (7%)
Query: 147 LVLIGRSMGYRMVDLNRMAEATREHHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCS 206
+ L+ R+ G + + E +R R + +++ + GG FGH +C
Sbjct: 223 MALLARNFGKALKRVEIDGERSRGRFSRSENDDLRKKKEIQCYECGG----FGHIKPECP 278
Query: 207 VTG---WRCFKCNREGHLAVNCKTKESL 231
+T +C KC GH C K L
Sbjct: 279 ITKRKEMKCLKCKGVGHTKFECPNKSKL 306
>At5g04280 RNA-binding protein-like
Length = 310
Score = 31.6 bits (70), Expect = 0.48
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 229 ESLCFNCNQPGHFSQDCMALRGESSGNVG 257
E CF C + GH+++DC + G G VG
Sbjct: 125 EDECFKCGRVGHWARDCPSAGGGRGGPVG 153
Score = 29.3 bits (64), Expect = 2.4
Identities = 23/80 (28%), Positives = 29/80 (35%), Gaps = 13/80 (16%)
Query: 151 GRSMGYRMVDLNRMA-----EATREHHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKC 205
GR G R++ +NR + H R + Y G G GG
Sbjct: 70 GRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGG--------GGGG 121
Query: 206 SVTGWRCFKCNREGHLAVNC 225
V CFKC R GH A +C
Sbjct: 122 RVGEDECFKCGRVGHWARDC 141
>At3g02820 CCHC-type zinc finger - like protein
Length = 282
Score = 31.6 bits (70), Expect = 0.48
Identities = 14/47 (29%), Positives = 21/47 (43%), Gaps = 3/47 (6%)
Query: 232 CFNCNQPGHFSQDCMA---LRGESSGNVGKGKQLAPEERIHAKEGKS 275
CF C +PGH+S+DC + + G +S + P KS
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKS 54
>At3g21010 unknown protein
Length = 438
Score = 31.2 bits (69), Expect = 0.63
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 16/50 (32%)
Query: 212 CFKCNREGHLAVNC----------------KTKESLCFNCNQPGHFSQDC 245
C CN+ H +C K K+ CF C + GH ++DC
Sbjct: 222 CVLCNKNNHKQEDCSSSIPKAGKSSGARQSKPKKGKCFQCGERGHKAKDC 271
>At1g60650 putative RNA-binding protein
Length = 249
Score = 30.8 bits (68), Expect = 0.82
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 226 KTKESLCFNCNQPGHFSQDC 245
K E CF C +PGH+++DC
Sbjct: 68 KGTEDECFKCRRPGHWARDC 87
Score = 30.0 bits (66), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 195 MRKFGHFANKCSVTGWRCFKCNREGHLAVNC 225
++K G ++++ T CFKC R GH A +C
Sbjct: 57 LKKGGGYSSRGKGTEDECFKCRRPGHWARDC 87
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,141,692
Number of Sequences: 26719
Number of extensions: 243423
Number of successful extensions: 1042
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 135
length of query: 275
length of database: 11,318,596
effective HSP length: 98
effective length of query: 177
effective length of database: 8,700,134
effective search space: 1539923718
effective search space used: 1539923718
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0103.5