BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.3
(186 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13220 putative nuclear matrix constituent protein 30 0.75
At2g17120 receptor-like GPI-anchored protein (lysM) 2 30 0.98
At4g38440 unknown protein 29 1.7
At2g21870 putative ATP synthase 28 2.8
At4g16960 disease resistance RPP5 like protein 28 3.7
At4g16950 disease resistance RPP5 like protein 28 3.7
At4g16940 disease resistance RPP5 like protein 28 3.7
At5g38850 disease resistance protein - like 27 4.9
At5g66210 calcium-dependent protein kinase 27 8.3
At5g43560 unknown protein 27 8.3
At4g16860 disease resistance RPP5 like protein 27 8.3
>At1g13220 putative nuclear matrix constituent protein
Length = 1128
Score = 30.0 bits (66), Expect = 0.75
Identities = 17/54 (31%), Positives = 33/54 (60%), Gaps = 3/54 (5%)
Query: 97 VLDFEKECLGNKILEKDMKCE---NALVSELKLEGKRAGMRSEDVIGSETQLRK 147
++D +KE LG+K+LE +++CE +L EL+ + + + ++ SE +L K
Sbjct: 374 LIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKVEIDHSEEKLEK 427
>At2g17120 receptor-like GPI-anchored protein (lysM) 2
Length = 350
Score = 29.6 bits (65), Expect = 0.98
Identities = 17/63 (26%), Positives = 28/63 (43%), Gaps = 6/63 (9%)
Query: 3 DGAIFQNEMVDVAIKKNGLWWMGPTILYGDSTTYRKISM------EDGAIVRARWWIDPP 56
+G N ++ IKK+ + T ++G TY KIS + + ++WI P
Sbjct: 99 NGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKIEIGQKFWIPLP 158
Query: 57 CKC 59
C C
Sbjct: 159 CSC 161
>At4g38440 unknown protein
Length = 1465
Score = 28.9 bits (63), Expect = 1.7
Identities = 29/113 (25%), Positives = 50/113 (43%), Gaps = 14/113 (12%)
Query: 61 GGIDSLVVPVNFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKECLGNKILEKDMKCENAL 120
G + +V +FS+ F N D++++ +++ LV D L + E +
Sbjct: 1361 GSVAYTLVVHHFSSLVFCNQAKDKVSLRNKIVKT-LVRD----------LSRKRHREGMM 1409
Query: 121 VSELKLEGKRAGMRSEDVIGSETQLRKEVAK---WINMFYSFELCKCKNIVIC 170
+ L+ + A E+VI +ET+ R EV K N EL K K+ +C
Sbjct: 1410 LDLLRYKKGSANAMEEEVIAAETEKRMEVLKEGCEGNSTLLLELEKLKSAALC 1462
>At2g21870 putative ATP synthase
Length = 240
Score = 28.1 bits (61), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (52%)
Query: 109 ILEKDMKCENALVSELKLEGKRAGMRSEDVIGSETQLRKEVAK 151
+L D K + LV+E + K+ G+R ED+ E L +AK
Sbjct: 158 LLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAK 200
>At4g16960 disease resistance RPP5 like protein
Length = 1041
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/45 (35%), Positives = 27/45 (59%)
Query: 94 SWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAGMRSEDV 138
S + L +EKE L + +KD+K E+ V E +L+ K+ + +DV
Sbjct: 254 SGMKLSWEKELLSEILGQKDIKIEHFGVVEQRLKHKKVLILLDDV 298
>At4g16950 disease resistance RPP5 like protein
Length = 1317
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/45 (35%), Positives = 27/45 (59%)
Query: 94 SWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAGMRSEDV 138
S + L +EKE L + +KD+K E+ V E +L+ K+ + +DV
Sbjct: 254 SGMKLSWEKELLSEILGQKDIKIEHFGVVEQRLKHKKVLILLDDV 298
>At4g16940 disease resistance RPP5 like protein
Length = 1103
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/45 (35%), Positives = 27/45 (59%)
Query: 94 SWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAGMRSEDV 138
S + L +EKE L + +KD+K E+ V E +L+ K+ + +DV
Sbjct: 247 SGMKLSWEKELLSEILGQKDIKIEHFGVVEQRLKHKKVLILLDDV 291
>At5g38850 disease resistance protein - like
Length = 986
Score = 27.3 bits (59), Expect = 4.9
Identities = 20/68 (29%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Query: 71 NFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKR 130
NF S F+ N LNIG E L LD ++ L + +K M+ E+ +L ++
Sbjct: 226 NFQRSCFMENVRGSLNIG--LDEYGLKLDLQERLLSKIMNQKGMRIEHLGTIRDRLHDQK 283
Query: 131 AGMRSEDV 138
+ +DV
Sbjct: 284 VLIILDDV 291
>At5g66210 calcium-dependent protein kinase
Length = 523
Score = 26.6 bits (57), Expect = 8.3
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 12/61 (19%)
Query: 103 ECLGNKILEKDMKCENALVSELKLEGK------------RAGMRSEDVIGSETQLRKEVA 150
EC + ++ +DMK EN L +L+ + G R D++GS + EV
Sbjct: 178 ECHLHGLVHRDMKPENFLFKSAQLDSPLKATDFGLSDFIKPGKRFHDIVGSAYYVAPEVL 237
Query: 151 K 151
K
Sbjct: 238 K 238
>At5g43560 unknown protein
Length = 1055
Score = 26.6 bits (57), Expect = 8.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 93 ESWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAGMRSEDVIGSETQLRK 147
E+WL +K G EK K + A + K +GK MR ED + ++T+ R+
Sbjct: 427 EAWLAESEQKGKRGASEKEKKSKKKQAKQKKNKNKGKE--MRKEDKVRTQTEERE 479
>At4g16860 disease resistance RPP5 like protein
Length = 1256
Score = 26.6 bits (57), Expect = 8.3
Identities = 15/45 (33%), Positives = 27/45 (59%)
Query: 94 SWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAGMRSEDV 138
S + L +EKE L + +KD+K ++ V E +L+ K+ + +DV
Sbjct: 252 SGMKLSWEKELLSEILGQKDIKIDHFGVVEQRLKHKKVLILLDDV 296
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,437,505
Number of Sequences: 26719
Number of extensions: 183795
Number of successful extensions: 452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 12
length of query: 186
length of database: 11,318,596
effective HSP length: 93
effective length of query: 93
effective length of database: 8,833,729
effective search space: 821536797
effective search space used: 821536797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0103.3