BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0101.5
(967 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61330 copia-type polyprotein 668 0.0
At1g48710 hypothetical protein 665 0.0
At1g58140 hypothetical protein 662 0.0
At3g60170 putative protein 655 0.0
At2g15650 putative retroelement pol polyprotein 642 0.0
At1g32590 hypothetical protein, 5' partial 585 e-167
At3g59720 copia-type reverse transcriptase-like protein 579 e-165
At3g25450 hypothetical protein 560 e-159
At2g20460 putative retroelement pol polyprotein 555 e-158
At2g16000 putative retroelement pol polyprotein 551 e-157
At1g70010 hypothetical protein 534 e-151
At2g05390 putative retroelement pol polyprotein 512 e-145
At1g37110 494 e-140
At3g45520 copia-like polyprotein 491 e-138
At2g21460 putative retroelement pol polyprotein 478 e-135
At2g13930 putative retroelement pol polyprotein 473 e-133
At4g17450 retrotransposon like protein 466 e-131
At4g03810 putative retrotransposon protein 466 e-131
At5g35820 copia-like retrotransposable element 454 e-127
At1g26990 polyprotein, putative 454 e-127
>At3g61330 copia-type polyprotein
Length = 1352
Score = 668 bits (1724), Expect = 0.0
Identities = 374/964 (38%), Positives = 537/964 (54%), Gaps = 34/964 (3%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
I NV + + N+LS+ QL +KGYDI + Q + +N + +
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMF---VL 447
Query: 63 ELETQKVKCL-LSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQ 121
+ +CL + EE W+ H R GH + + L + ++VRGLP + + +CE C
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ-VCEGCL 506
Query: 122 KGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
GK K+SF ++ +PLEL+H D+ GP+K +S+G Y ++ +DD+SR TWV F+
Sbjct: 507 LGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
K E +F F V+ E+ I +RSD GG F + +F + GI + PR+PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QNGVVERKNRT+ EM+R+ML+ + K WAEAV + Y+ NR + + KTP E W
Sbjct: 627 QNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSG 686
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
KP +S+ FG + +A ++ K D KS K + +GY SKG+++YN D K
Sbjct: 687 RKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISR 746
Query: 362 HVRFDDKLDSDQSKLVEKFVDMSINVSDKGKAP--EEAEPE---EDSPEEVGPSDPQPQK 416
++ FD+ E D + N D P EE EPE E+ P E + P
Sbjct: 747 NIVFDE----------EGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPT 796
Query: 417 KSRIVASHPKELILGNKDEPVRTRSAFRPSEET----LLSLKGLVSLIEPKSIDEALQDK 472
S+I S + + R RS E T L+L L + EP +A++ K
Sbjct: 797 SSQIEES--------SSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKK 848
Query: 473 DWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQGYR 532
W AM+EE+ KND W + P G IG KWV++ K N KG+V R KARLVA+GY
Sbjct: 849 TWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYS 908
Query: 533 QQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPPGF 592
Q+ GIDY E FAPVARLE +RL+IS + + +HQMDVKS FLNG + EEVY+ QP G+
Sbjct: 909 QRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 968
Query: 593 EDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKTYKDDILIV 651
+ D V LKK LYGLKQAPRAW R+ ++ E +F++ + L+ K K+DILI
Sbjct: 969 IVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIA 1028
Query: 652 QIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKYTK 711
+YVDD+IF N S+ +EF + M EFEM+ +G + Y+LGI+V Q +I Q Y K
Sbjct: 1029 CLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAK 1088
Query: 712 ELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRPDILFSEH 771
E+LKKF + +S T M L K++ V ++ ++ S YLT +RPDIL++
Sbjct: 1089 EVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVG 1148
Query: 772 LCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKST 831
+ +R+ P TH KRILRY+KGT N GL Y TS+YKL GY D+D+ GD +RKST
Sbjct: 1149 VVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKST 1208
Query: 832 SGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQI-LESNIP 890
SG ++G +W SK+Q + LST EAEY++ C +W+++ L++ + E
Sbjct: 1209 SGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTK 1268
Query: 891 IYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLA 950
I+ DN +AI+L+KNP+ H R+K+I+ +YH+IR+ V K + AD FTKPL
Sbjct: 1269 IFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLK 1328
Query: 951 EDRF 954
+ F
Sbjct: 1329 RENF 1332
>At1g48710 hypothetical protein
Length = 1352
Score = 665 bits (1716), Expect = 0.0
Identities = 373/964 (38%), Positives = 537/964 (55%), Gaps = 34/964 (3%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
I NV + + N+LS+ QL +KGYDI + Q + +N + +
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMF---VL 447
Query: 63 ELETQKVKCL-LSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQ 121
+ +CL + EE W+ H R GH + + L + ++VRGLP + + +CE C
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ-VCEGCL 506
Query: 122 KGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
GK K+SF ++ + LEL+H D+ GP+K +S+G Y ++ +DD+SR TWV F+
Sbjct: 507 LGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
K E +F F V+ E+ I +RSD GG F + +F + GI + PR+PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QNGV ERKNRT+ EM+R+ML+ + K WAEAV + Y+ NR + + KTP E W
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSG 686
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
K +S+ FG + +A ++ K D KS K + +GY SKG+++YN D K
Sbjct: 687 RKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISR 746
Query: 362 HVRFDDKLDSDQSKLVEKFVDMSINVSDKGKAP--EEAEPE---EDSPEEVGPSDPQPQK 416
++ FD++ + D + N D P EE EPE E+ P E + P
Sbjct: 747 NIVFDEEGEWDWNS----------NEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPT 796
Query: 417 KSRIVASHPKELILGNKDEPVRTRSAFRPSEETL----LSLKGLVSLIEPKSIDEALQDK 472
S+I S + + R RS E T L+L L + EP EA++ K
Sbjct: 797 SSQIEES--------SSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKK 848
Query: 473 DWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQGYR 532
W AM+EE+ KND W + P G IG KWV++ K N KG+V R KARLVA+GY
Sbjct: 849 TWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYI 908
Query: 533 QQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPPGF 592
Q+ GIDY E FAPVARLE +RL+IS + + +HQMDVKS FLNG + EEVY+ QP G+
Sbjct: 909 QRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 968
Query: 593 EDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKTYKDDILIV 651
+ D V LKK+LYGLKQAPRAW R+ ++ E +F++ + L+ K K+DILI
Sbjct: 969 IVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIA 1028
Query: 652 QIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKYTK 711
+YVDD+IF N S+ +EF + M EFEM+ +G + Y+LGI+V Q +I Q Y K
Sbjct: 1029 CLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAK 1088
Query: 712 ELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRPDILFSEH 771
E+LKKF M +S T M L K++ V ++ ++ S YLT +RPDIL++
Sbjct: 1089 EVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVG 1148
Query: 772 LCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKST 831
+ +R+ P TH KRILRY+KGT N GL Y TS+YKL GY D+D+ GD +RKST
Sbjct: 1149 VVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKST 1208
Query: 832 SGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQI-LESNIP 890
SG ++G +W SK+Q + LST EAEY++ C +W+++ L++ + E
Sbjct: 1209 SGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTK 1268
Query: 891 IYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLA 950
I+ DN +AI+L+KNP+ H R+K+I+ +YH+IR+ V K + ADIFTKPL
Sbjct: 1269 IFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLK 1328
Query: 951 EDRF 954
+ F
Sbjct: 1329 REDF 1332
>At1g58140 hypothetical protein
Length = 1320
Score = 662 bits (1708), Expect = 0.0
Identities = 364/955 (38%), Positives = 526/955 (54%), Gaps = 48/955 (5%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
I NV + + N+LS+ QL +KGYDI + Q + +N + +
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMF---VL 447
Query: 63 ELETQKVKCL-LSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQ 121
+ +CL + EE W+ H R GH + + L + ++VRGLP + + +CE C
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ-VCEGCL 506
Query: 122 KGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
GK K+SF ++ +PLEL+H D+ GP+K +S+G Y ++ +DD+SR TWV F+
Sbjct: 507 LGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
K E +F F V+ E+ I +RSD GG F + +F + GI + PR+PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QNGV ERKNRT+ EM+R+ML+ + K WAEAV + Y+ NR + + KTP E W
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSG 686
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
KP +S+ FG + +A ++ K D KS K + +GY SKG+++YN D K
Sbjct: 687 RKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISR 746
Query: 362 HVRFDDKLDSDQSKLVEKFVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQPQKKSRIV 421
++ FD++ + D + N D P EED PE
Sbjct: 747 NIVFDEEGEWDWNS----------NEEDYNFFPHF---EEDKPEPT-------------- 779
Query: 422 ASHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEE 481
++EP P+ T ++ EP EA++ K W AM+EE
Sbjct: 780 -----------REEPPSEEPTTPPTSPTSSQIE---EKCEPMDFQEAIEKKTWRNAMDEE 825
Query: 482 LNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQGYRQQEGIDYTE 541
+ KND W + P G IG KWV++ K N KG+V R KARLVA+GY Q+ GIDY E
Sbjct: 826 IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDE 885
Query: 542 TFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPPGFEDEKNPDHV 601
FAPVARLE +RL+IS + + +HQMDVKS FLNG + EEVY+ QP G+ + D V
Sbjct: 886 VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 945
Query: 602 FNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIF 660
LKK+LYGLKQAPRAW R+ ++ E +F++ + L+ K K+DILI +YVDD+IF
Sbjct: 946 LRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIF 1005
Query: 661 GSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKYTKELLKKFNMT 720
N S+ +EF + M EFEM+ +G + Y+LGI+V Q +I Q Y KE+LKKF M
Sbjct: 1006 TGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMD 1065
Query: 721 ESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRPDILFSEHLCARFQSDP 780
+S T M L K++ V ++ ++ S YLT +RPDIL++ + +R+ P
Sbjct: 1066 DSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHP 1125
Query: 781 RETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGS 840
TH KRILRY+KGT N GL Y TS+YKL GY D+D+ GD +RKSTSG ++G
Sbjct: 1126 TTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGD 1185
Query: 841 NLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQI-LESNIPIYCDNTAAI 899
+W SK+Q + LST EAEY++ C +W+++ L++ + E I+ DN +AI
Sbjct: 1186 TAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAI 1245
Query: 900 SLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRF 954
+L+KNP+ H R+K+I+ +YH+IR+ V K + ADIFTKPL + F
Sbjct: 1246 ALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDF 1300
>At3g60170 putative protein
Length = 1339
Score = 655 bits (1691), Expect = 0.0
Identities = 382/984 (38%), Positives = 544/984 (54%), Gaps = 29/984 (2%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
I V V L +NLLS+ QL ++G I+ +C+ G+++ + N + L
Sbjct: 355 IPEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFF--LL 412
Query: 63 ELETQKVKCLLSVNE----EQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCE 118
+ QK L E E + H R GH + + L +V GLP LK + + +C
Sbjct: 413 ASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKE-ICA 471
Query: 119 ACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVK 178
C GK + S K +S L+L+H D+ GP+ S GKRY + +DD++R TWV
Sbjct: 472 ICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVY 531
Query: 179 FISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPR 238
F+ K E+ + F F V+ E + +R+D GG F +++F S+GI+ +
Sbjct: 532 FLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAF 591
Query: 239 TPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYEL 298
TPQQNGV ERKNRT+ R+ML E + K FW+EA S +IQNR + TP E
Sbjct: 592 TPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEA 651
Query: 299 WKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIE 358
W KP + YF FGC+ Y + K D KS KC+ LG S+ SK +R+Y+ K I
Sbjct: 652 WSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIV 711
Query: 359 EYIHVRFDD--KLDSDQSKLVEKFVDMSINVSDKGKAPEEAEP-EEDSPEEVG------- 408
V FD+ D DQ+ + K V + D K E EP SP VG
Sbjct: 712 ISKDVVFDEDKSWDWDQADVEAKEVTLECGDEDDEKNSEVVEPIAVASPNHVGSDNNVSS 771
Query: 409 -----PSDPQPQKKSRIVASHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPK 463
PS P P S + A +E T E + L +++ +P
Sbjct: 772 SPILAPSSPAP---SPVAAKVTRERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPI 828
Query: 464 SIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNK 523
D+A++DK W AME E+ KN+ W + P+G IG KWV++ KLNE G+V + K
Sbjct: 829 QFDDAVKDKIWREAMEHEIESIVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYK 888
Query: 524 ARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEE 583
ARLVA+GY Q GIDYTE FAPVARL+ +R +++ S N + Q+DVKS FL+G + EE
Sbjct: 889 ARLVAKGYAQCYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEE 948
Query: 584 VYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLR-FLLENEFVRGKVDTTLFCK 642
VYV QP GF E + V+ L+K+LYGLKQAPRAWY R+ + L+ EF R + TLF K
Sbjct: 949 VYVRQPEGFIREGEEEKVYKLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTK 1008
Query: 643 TYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEAT 702
T +ILIV +YVDD+IF ++ ++C EF + M EFEMS +G++K+FLGI+V Q+
Sbjct: 1009 TRVGNILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGI 1068
Query: 703 YIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTAS 762
+I Q +Y +E+L +F M ES K + P L K++ KV + +++ ++ S +YLT +
Sbjct: 1069 FICQRRYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVT 1128
Query: 763 RPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLY--KKTSEYKLSGYCDAD 820
RPD+++ L +RF S+PR +H KRILRYLKGT LG+ Y +K KL + D+D
Sbjct: 1129 RPDLMYGVCLISRFMSNPRMSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSD 1188
Query: 821 YAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLE 880
YAGD +R+STSG + S + WASK+Q +ALST EAEYI+ A C +W++ LE
Sbjct: 1189 YAGDLNDRRSTSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLE 1248
Query: 881 DYQILE-SNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTI 939
E S I CDN++ I LSK+P+LH ++K+IEV++H++RD V
Sbjct: 1249 KLGAEEKSATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTED 1308
Query: 940 NSADIFTKPLAEDRFKFILKNLNM 963
ADIFTKPL ++F+ + L M
Sbjct: 1309 QVADIFTKPLKLEQFEKLRALLGM 1332
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 642 bits (1657), Expect = 0.0
Identities = 361/977 (36%), Positives = 553/977 (55%), Gaps = 31/977 (3%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
I NV LV GL NLLS+ Q+ GY + F K C + +G + N + + ++KI+L
Sbjct: 381 IKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRC-IIQDANGKEIMNIEMTDKSFKIKLS 439
Query: 63 ELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQK 122
+E + + + EE W H+RLGH S +++ + +LV GLP K + + C+AC
Sbjct: 440 SVEEEAMTANVQT-EETW--HKRLGHVSNKRLQQMQDKELVNGLPRFKVTKET-CKACNL 495
Query: 123 GKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFISR 182
GK ++ SF ++ T LE++H D+ GP++ +SI G RY ++ +DDY+ WV F+ +
Sbjct: 496 GKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQ 555
Query: 183 KDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQ 242
K E+ + F F V+ ++ C I +R E + GI + P +PQQ
Sbjct: 556 KSETFATFKKFKALVEKQSNCSIKTLRP----------MEVFCEDEGINRQVTLPYSPQQ 605
Query: 243 NGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNK-TPYELWKK 301
NG ERKNR+L EM+R+ML E D+ WAEAV TS Y+QNR+ + I + TP E W
Sbjct: 606 NGAAERKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCG 665
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
KPN+S+ FG +CY + K D+K+ +L+GYS ++KG+R++ + + +E
Sbjct: 666 HKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSR 725
Query: 362 HVRF--DDKLDSDQSKLVEKFVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQPQKKSR 419
V F D K D D+ + V+K MSIN + + +E + S + ++ + + S
Sbjct: 726 DVVFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQETSSHDLSQIDDHANNGEGETSSH 785
Query: 420 IVASHPKELILGNKDEPVRTRSAFR-----PSEETLLSLKG----LVSLIEPKSIDEALQ 470
+++ + + P + +S P E + +G LV+ EP++ DEA
Sbjct: 786 VLSQVNDQEERETSESPKKYKSMKEILEKAPRMENDEAAQGIEACLVANEEPQTYDEARG 845
Query: 471 DKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQG 530
DK+W AM EE+ KN W +V KP+ ++I KW+++ K + G+ V++KARLVA+G
Sbjct: 846 DKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARG 905
Query: 531 YRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPP 590
+ Q+ GIDY ETFAPV+R + IR L++++ L+QMDVKS FLNG + EEVYV QPP
Sbjct: 906 FSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPP 965
Query: 591 GFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKTYKDDIL 649
GF E + V L K+LYGLKQAPRAWYER+ + ++N F R D L+ K +D+L
Sbjct: 966 GFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSKKKGEDVL 1025
Query: 650 IVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKY 709
IV +YVDD+I N+ L F + M+ EFEM+ +G L YFLG++V+Q ++ Q KY
Sbjct: 1026 IVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKY 1085
Query: 710 TKELLKKFNMTESIIAKTLMHPTCILEKEDASGK--VCQKLYRGMICSFLYLTASRPDIL 767
+L+ KF M ES T + P + + K YR ++ LYL ASRPD++
Sbjct: 1086 ANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVM 1145
Query: 768 FSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTE 827
++ +R+ S P H KR+LRY+KGT+N G+L+ +L GY D+D+ G +
Sbjct: 1146 YASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLED 1205
Query: 828 RKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQI-LE 886
+KST+G LG + W S +Q T+A STAEAEYI++ +W++ ED+ + +
Sbjct: 1206 KKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFK 1265
Query: 887 SNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFT 946
IPI CDN +AI++ +NP+ H R K+IE+KYHF+R+ KG AD+ T
Sbjct: 1266 EGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGEDQLADVLT 1325
Query: 947 KPLAEDRFKFILKNLNM 963
K L+ RF+ + + L +
Sbjct: 1326 KALSVSRFEGLRRKLGV 1342
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 585 bits (1508), Expect = e-167
Identities = 332/977 (33%), Positives = 527/977 (52%), Gaps = 63/977 (6%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
I +V V GL +NL S+ QL KG I C + + ++ +S N +
Sbjct: 313 ISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFA 372
Query: 63 EL----ETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSD-ALC 117
+ ET++ +CL + + + H+R GH + + + L + ++V+GLP + A+C
Sbjct: 373 AVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVC 432
Query: 118 EACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWV 177
+ C KGK + S ++ +++ L+L+H D+ GP+ S GKRY + +DD+SR W
Sbjct: 433 DICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWT 492
Query: 178 KFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCP 237
+S K E+ F F +V+ E+ +++ +RSD GG + + +F+ +GI +
Sbjct: 493 YLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAA 552
Query: 238 RTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYE 297
TPQQNGV ERKNR++ M+R ML E+ + + FW EAV + YI NR + + + TP E
Sbjct: 553 YTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEE 612
Query: 298 LWKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTI 357
W KP++ + FG + YAL + K D KS KC++ G SK SK +R+Y+ I
Sbjct: 613 KWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKI 672
Query: 358 EEYIHVRFDDKL----------------DSDQSKLVEKFVDMSIN-VSDKGKAPEEAEPE 400
V+FD++ +SD E+ +++ N D+ + EE E
Sbjct: 673 LISRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETV 732
Query: 401 EDSPEEVGPSDPQPQKKSRIVASHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLI 460
++ + P+ + R K+ ++GN + + E+ +L+L +
Sbjct: 733 AETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVLIT-----QDEEDEVLAL--FIGPD 785
Query: 461 EPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVV 520
+P +EA Q + W AME E+ +N+ W +V+ P+ +IG KW+F+ K NEKG+V
Sbjct: 786 DPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVD 845
Query: 521 RNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYI 580
+ KARLVA+GY Q+ G+D+ E FAPVA+ + IRL++ + + Q+DVKS FL+G +
Sbjct: 846 KFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDL 905
Query: 581 SEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTL 639
E+V+V QP GFE E+ V+ LKK+LYGLKQAPRAWY R+ F + F + + TL
Sbjct: 906 KEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTL 965
Query: 640 FCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTP 699
F K + D L+V +YVDD+I+ ++ + + F M EF M+ +G++KYFLG++V Q
Sbjct: 966 FVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDE 1025
Query: 700 EATYIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYL 759
+I+Q KY E++KK+ M K + P L K A
Sbjct: 1026 RGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGA------------------- 1066
Query: 760 TASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDA 819
+R+ P E HL VKRILRY++GT +LG+ Y++ +L G+ D+
Sbjct: 1067 -------------VSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDS 1113
Query: 820 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQL 879
DYAGD +RKSTSG LG ++WASK+Q + LST EAE++S + +W+++ L
Sbjct: 1114 DYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVL 1173
Query: 880 EDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILT 938
E+ E ++CDN++ I LSKNP+LH R+K+I V+YHF+R+ V++G T
Sbjct: 1174 EEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTT 1233
Query: 939 INSADIFTKPLAEDRFK 955
ADI TK + + F+
Sbjct: 1234 DQVADIMTKAVKREVFE 1250
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 579 bits (1493), Expect = e-165
Identities = 345/966 (35%), Positives = 500/966 (51%), Gaps = 118/966 (12%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKI--- 59
I NV + + N+LS+ QL +KGYDI D ++ K N K+
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLK----------DNNLSIRDKESNLITKVPMS 440
Query: 60 --RLFELETQK--VKCL-LSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSD 114
R+F L + +CL + EE W+ H R GH + + L + ++VRGLP + +
Sbjct: 441 KNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ 500
Query: 115 ALCEACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRW 174
+CE C G K+SF ++ +PLEL+H D+ GP+K +S+G Y ++ +DD+SR
Sbjct: 501 -VCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRK 559
Query: 175 TWVKFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDF 234
TWV F+ K E +F F V+ E+ I +RSD GG F + +F + GI
Sbjct: 560 TWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQL 619
Query: 235 SCPRTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKT 294
+ PR+PQQNGV ERKNRT+ EM+R+ML+ + K WAEAV + Y+ NR + + KT
Sbjct: 620 TVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKT 679
Query: 295 PYELWKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDA 354
P E W KP +S+ FG + +A ++ +K D KS K + +GY SKG+++YN D
Sbjct: 680 PQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDT 739
Query: 355 KTIEEYIHVRFDDKLDSDQSKLVEKFVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQP 414
K ++ FD++ + D + N D P EED PE P
Sbjct: 740 KKTIISRNIVFDEEGEWDWNS----------NEEDYNFFPHF---EEDKPEPTREEPPSE 786
Query: 415 QKKSRIVASHPKELILGNKDEPVRTRSAFRPSEETL----LSLKGLVSLIEPKSIDEALQ 470
+ + + ++ + + R RS E T L+L L + EP EA++
Sbjct: 787 EPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIE 846
Query: 471 DKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQG 530
K W AM+EE+ KND W + P G IG KWV++ K N KG+V R KARLVA+G
Sbjct: 847 KKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKG 906
Query: 531 YRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPP 590
Y Q+ GIDY E FAPVARLE +RL+IS + + +HQMDVKS FLNG + EEVY+ QP
Sbjct: 907 YSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 966
Query: 591 GFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKTYKDDIL 649
G+ + D V LKK LYGLKQAPRAW R+ ++ E +F++ + L+ K K+DIL
Sbjct: 967 GYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDIL 1026
Query: 650 IVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKY 709
I +YVDD+IF N S+ +EF + M EFEM+ +G + Y+LGI+V Q +I Q Y
Sbjct: 1027 IACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGY 1086
Query: 710 TKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRPDILFS 769
KE+LKKF M +S +P+ ++ S YLT +RPDIL++
Sbjct: 1087 AKEVLKKFKMDDS-------NPS-------------------LVGSLRYLTCTRPDILYA 1120
Query: 770 EHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERK 829
+ +R+ P TH KRILRY+KGT N GL Y TS+YKL
Sbjct: 1121 VGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKL---------------- 1164
Query: 830 STSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQI-LESN 888
+C+ +W+++ L++ + E
Sbjct: 1165 ------------------------------------VVCHA--IWLRNLLKELSLPQEEP 1186
Query: 889 IPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFTKP 948
I+ DN +AI+L+KNP+ H R+K+I+ +YH+IR+ V K + ADIFTKP
Sbjct: 1187 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKP 1246
Query: 949 LAEDRF 954
L + F
Sbjct: 1247 LKREDF 1252
>At3g25450 hypothetical protein
Length = 1343
Score = 560 bits (1444), Expect = e-159
Identities = 338/981 (34%), Positives = 527/981 (53%), Gaps = 47/981 (4%)
Query: 5 NVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKR-RNNTYKIRLFE 63
+V + L N+LS+ Q + G DI + + +G++L ++R RN YK+
Sbjct: 350 DVYYIPDLKSNILSLGQATESGCDIRMREDYL-TLHDREGNLLIKAQRSRNRLYKV---S 405
Query: 64 LETQKVKCL-LSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQK 122
LE + KCL L+ E + H RLGH S I + K +LV G+ + C +C
Sbjct: 406 LEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSSVPQEKETCGSCLF 465
Query: 123 GKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFISR 182
GK + SF ++ LEL+H DL GP+ + KRY V++DD+SR+ W +
Sbjct: 466 GKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSILLKE 525
Query: 183 KDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQ 242
K E+ F F V+ E I R+D GG F + +F+ GI + P TPQQ
Sbjct: 526 KSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQ 585
Query: 243 NGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKV 302
NGVVER+NRTL M+R++L+ ++M + W EAV S Y+ NR+ R + N+TPYE++K
Sbjct: 586 NGVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHK 645
Query: 303 KPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYIH 362
KPN+ + FGCV YA L K D +S + LG SK +R+ + + I
Sbjct: 646 KPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSRD 705
Query: 363 VRFD--------------DKLDSDQSKLVEKFVDMSINVSDKGKAPEEAEP--------- 399
V FD DK + + +F + + +D PEE E
Sbjct: 706 VVFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDISTEPEETEEAEINGEDEN 765
Query: 400 --EEDSPEEVGPS--DPQPQKKSRIVASHPKELILGNKDEPVRTRSAFRPSEETLLSLKG 455
EE EE S +PQP ++S+ P L KD + A +E LL++
Sbjct: 766 IIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYL----KDYVL---CAEIEAEHLLLAVND 818
Query: 456 LVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNE 515
EP EA + K+W A +EE+ KN W++V P G IG KWVF+ K N
Sbjct: 819 -----EPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHNS 873
Query: 516 KGDVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVF 575
G + + KARLVA+GY Q+ G+D+ E FAPVAR+E +RL+I+ + ++ +H +DVK+ F
Sbjct: 874 DGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAF 933
Query: 576 LNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLL-ENEFVRGK 634
L+G + E+VYV QP GF ++++ + V+ L K+LYGL+QAPRAW +L +L E +F +
Sbjct: 934 LHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCH 993
Query: 635 VDTTLFCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQ 694
+ +L+ K ++IL+V +YVDD++ +N + F + M +FEMS +G+L Y+LGI+
Sbjct: 994 KEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIE 1053
Query: 695 VDQTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMIC 754
V Q+ + + Q +Y K++L++ M++ T M + L K ++ + YR I
Sbjct: 1054 VLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIG 1113
Query: 755 SFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLS 814
YL +RPD+ ++ + +R+ +PRE+H +K+ILRYL+GTT+ GL +KK L
Sbjct: 1114 CLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLI 1173
Query: 815 GYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLW 874
GY D+ + D + KST G+ +L ++W S++Q + LS+ EAE+++ +W
Sbjct: 1174 GYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIW 1233
Query: 875 MKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*S 933
++ L + E + I DN +AI+L+KNP+ H R+K+I +YHFIR+ V+ G
Sbjct: 1234 LQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVE 1293
Query: 934 SLILTINSADIFTKPLAEDRF 954
+ ADI TK L + +F
Sbjct: 1294 HVPGVRQKADILTKALGKIKF 1314
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 555 bits (1429), Expect = e-158
Identities = 330/980 (33%), Positives = 519/980 (52%), Gaps = 39/980 (3%)
Query: 3 IDNVLLVDGLNHNLLSISQLA-DKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRL 61
+ NVL + NL+SIS L D G +IF+ C+ G L KR N L
Sbjct: 494 LQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGN-----L 548
Query: 62 FELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQ 121
+ L+TQ ++ + V H+RLGH S ++ L V G K A C C
Sbjct: 549 YVLDTQSPAISVNAVVDVSVWHKRLGHPSFSRLD---SLSEVLGTTRHKNKKSAYCHVCH 605
Query: 122 KGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
K K+SF + N + S ELLHID++GP E++ G +Y + IVDD+SR TW+ +
Sbjct: 606 LAKQKKLSFPSANNICNST-FELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLK 664
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
K + +VF FI V+N+ R+ VRSD+ + F + + GI SCP TP+
Sbjct: 665 SKSDVLTVFPAFIDLVENQYDTRVKSVRSDNA---KELAFTEFYKAKGIVSFHSCPETPE 721
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QN VVERK++ + ++R ++ + +M+ +W + V T+ ++ NR + NKTP+E+
Sbjct: 722 QNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTG 781
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
P+ S FGC+CY+ + + HKF +S C+ LGY KG+++ + ++ +
Sbjct: 782 KLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISR 841
Query: 362 HVRFDDKL----DSDQSKLVEKFVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQPQKK 417
+V F ++L S QS V ++ G + P SP+ P Q
Sbjct: 842 NVEFHEELFPLASSQQSATTASDVFTPMDPLSSGNSITSHLP---SPQ----ISPSTQIS 894
Query: 418 SRIVASHPKEL-----ILGNKDE--PVRTRSAFRP-SEETLLSLKGLVSLIEPKSIDEAL 469
R + P L NKD+ P+ + ++ S +L + + + P+S EA
Sbjct: 895 KRRITKFPAHLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAK 954
Query: 470 QDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQ 529
K+W A+++E+ + D W I P G +G KWVF K + G + R KAR+VA+
Sbjct: 955 DSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAK 1014
Query: 530 GYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQP 589
GY Q+EG+DYTETF+PVA++ ++LL+ S + L+Q+D+ + FLNG + E +Y+ P
Sbjct: 1015 GYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLP 1074
Query: 590 PGFEDEKN----PDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKTY 644
G+ D K P+ V LKKS+YGLKQA R W+ + LL F + D TLF +
Sbjct: 1075 DGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCI 1134
Query: 645 KDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYI 704
+ +++ +YVDDI+ S + +E ++A F++ +G LKYFLG++V +T E +
Sbjct: 1135 GSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISL 1194
Query: 705 HQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRP 764
Q KY ELL +M + + M P L K D +++YR ++ +YLT +RP
Sbjct: 1195 SQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRP 1254
Query: 765 DILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGD 824
DI F+ + +F S PR HL V ++L+Y+KGT GL Y + L GY DAD+
Sbjct: 1255 DITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTC 1314
Query: 825 RTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQI 884
R+ST+G F+GS+L+SW SK+Q T++ S+AEAEY ++A+ + M W+ L ++
Sbjct: 1315 PDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRV 1374
Query: 885 LESNIPI-YCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSAD 943
S +PI Y D+TAA+ ++ NP+ H R K+IE+ H +R+ + G + AD
Sbjct: 1375 -HSGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVAD 1433
Query: 944 IFTKPLAEDRFKFILKNLNM 963
I TKPL +F +L +++
Sbjct: 1434 ILTKPLFPYQFAHLLSKMSI 1453
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 551 bits (1421), Expect = e-157
Identities = 328/984 (33%), Positives = 518/984 (52%), Gaps = 43/984 (4%)
Query: 3 IDNVLLVDGLNHNLLSISQLADK-GYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRL 61
+ NVL + NL+SIS L D G +IF++ SC I G +L +R N Y L
Sbjct: 483 LKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLY---L 539
Query: 62 FELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQ 121
++ Q + V+ W HRRLGHAS++++ + G K C C
Sbjct: 540 LDVGDQSISVNAVVDISMW--HRRLGHASLQRLD---AISDSLGTTRHKNKGSDFCHVCH 594
Query: 122 KGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
K K+SF N V +LLHID++GP E++ G +Y + IVDD+SR TW+ +
Sbjct: 595 LAKQRKLSFPTSNKVC-KEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLK 653
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
K E +VF FI QV+N+ ++ VRSD+ KF S + GI SCP TP+
Sbjct: 654 TKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPE 710
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QN VVERK++ + ++R ++ + + W + V T+ ++ NR + ++NKTPYE+
Sbjct: 711 QNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTG 770
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
P FGC+CY+ + + HKF +S CL LGY KG+++ + ++ T+
Sbjct: 771 TAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISR 830
Query: 362 HVRFDDKL--------DSDQSKLVEKFVDMSINV-SDKGKAPEEAEPEEDSPEEVGPSDP 412
+V+F +++ KL V +S + SD +P P ++ SD
Sbjct: 831 NVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSL------PSQI--SDL 882
Query: 413 QPQKKSRIVASHPKEL-------ILGNKDEPVRTRSAF-RPSEETLLSLKGLVSLIEPKS 464
PQ S+ V P L + + P+ + ++ + S + + + + P +
Sbjct: 883 PPQISSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTN 942
Query: 465 IDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
EA K+W A++ E+ K + W I P+G +G KWVF K G++ R KA
Sbjct: 943 YAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKA 1002
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEV 584
RLVA+GY Q+EG+DYT+TF+PVA++ I+LL+ S + L Q+DV + FLNG + EE+
Sbjct: 1003 RLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEI 1062
Query: 585 YVHQPPGFEDEKN----PDHVFNLKKSLYGLKQAPRAWYERLRF-LLENEFVRGKVDTTL 639
++ P G+ + K + V LK+S+YGLKQA R W+++ LL F + D TL
Sbjct: 1063 FMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTL 1122
Query: 640 FCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTP 699
F K Y + +IV +YVDDI+ S + + + +E + F++ +G+LKYFLG++V +T
Sbjct: 1123 FLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTT 1182
Query: 700 EATYIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYL 759
I Q KY ELL+ M M P + K+D + YR ++ +YL
Sbjct: 1183 AGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYL 1242
Query: 760 TASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDA 819
T +RPDI F+ + +F S PR THLT R+L+Y+KGT GL Y +S+ L G+ D+
Sbjct: 1243 TITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADS 1302
Query: 820 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQL 879
D+A + R+ST+ F+G +L+SW SK+Q T++ S+AEAEY ++A+ M+W+ L
Sbjct: 1303 DWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLL 1362
Query: 880 EDYQILESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTI 939
Q +Y D+TAAI ++ NP+ H R K+I++ H +R+ + G +
Sbjct: 1363 VSLQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTED 1422
Query: 940 NSADIFTKPLAEDRFKFILKNLNM 963
ADI TKPL +F+ + +++
Sbjct: 1423 QVADILTKPLFPYQFEHLKSKMSI 1446
>At1g70010 hypothetical protein
Length = 1315
Score = 534 bits (1375), Expect = e-151
Identities = 330/995 (33%), Positives = 514/995 (51%), Gaps = 45/995 (4%)
Query: 3 IDNVLLVDGLNHNLLSISQLADK-GYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRL 61
+++VL + NLLS+S L G I F++ SC ++ K+ N Y + L
Sbjct: 325 LNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIVDL 384
Query: 62 FELETQKVKCLLSV----NEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALC 117
L ++V + + W H+RLGH S++K+ + L P K ++D C
Sbjct: 385 DSLSHPGTDSSITVASVTSHDLW--HKRLGHPSVQKLQPMSSL---LSFPKQKNNTDFHC 439
Query: 118 EACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWV 177
C K + F + N S SRP +L+HID +GP ++ G RY + IVDDYSR TWV
Sbjct: 440 RVCHISKQKHLPFVSHNNKS-SRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWV 498
Query: 178 KFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCP 237
+ K + +V TF+ V+N+ I VRSD+ F + S GI SCP
Sbjct: 499 YLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FTQFYHSKGIVPYHSCP 555
Query: 238 RTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYE 297
TPQQN VVERK++ + ++R++ + + +W + + T+ Y+ NR+ + +K P+E
Sbjct: 556 ETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFE 615
Query: 298 LWKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTI 357
+ K P + FGC+CYA + HKF ++ C +GY KG+++ + + +I
Sbjct: 616 VLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSI 675
Query: 358 EEYIHVRFDDKL----DSDQSKLVEKFV-DMS------------INVSDKGKAPE---EA 397
HV F ++L SD S+ + F D++ +N SD + E A
Sbjct: 676 IVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSSSVEILPSA 735
Query: 398 EPEEDSPEEVGPSDPQPQKKSRIVASHPKELILGNKDEPVRTRSAF-RPSEETLLSLKGL 456
P + PE + + KK + + ++ + +R ++ R ++ L L L
Sbjct: 736 NPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLACL 795
Query: 457 VSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEK 516
EP + EA + + W AM E + W + P IG +W+F+ K N
Sbjct: 796 DKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSD 855
Query: 517 GDVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFL 576
G V R KARLVAQGY Q+EGIDY ETF+PVA+L +++LL+ + + L Q+D+ + FL
Sbjct: 856 GSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFL 915
Query: 577 NGYISEEVYVHQPPGFE----DEKNPDHVFNLKKSLYGLKQAPRAWYERLRF---LLENE 629
NG + EE+Y+ P G+ D P+ V LKKSLYGLKQA R WY L+F LL
Sbjct: 916 NGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWY--LKFSSTLLGLG 973
Query: 630 FVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKY 689
F++ D T F K L V +Y+DDII S N + M++ F++ +GELKY
Sbjct: 974 FIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKY 1033
Query: 690 FLGIQVDQTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLY 749
FLG+++ ++ + +I Q KY +LL + + M P+ + + V Y
Sbjct: 1034 FLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPY 1093
Query: 750 RGMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTS 809
R +I +YL +RPDI F+ + A+F PR+ HL V +IL+Y+KGT GL Y TS
Sbjct: 1094 RRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATS 1153
Query: 810 EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICN 869
E +L Y +ADY R R+STSG C FLG +L+ W S++Q ++ S+AEAEY S+++
Sbjct: 1154 ELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVAT 1213
Query: 870 T*MLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKG 928
++W+ + L++ Q+ L ++CDN AAI ++ N + H R K+IE H +R+ + KG
Sbjct: 1214 DELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKG 1273
Query: 929 YFF*SSLILTINSADIFTKPLAEDRFKFILKNLNM 963
F + + AD FTKPL F ++ + +
Sbjct: 1274 LFELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 512 bits (1319), Expect = e-145
Identities = 315/973 (32%), Positives = 511/973 (52%), Gaps = 52/973 (5%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKR-RNNTYKIRL 61
+ +V + L N++S+ Q + G D+ + +G +L + R RN YK+
Sbjct: 336 LTDVYFIPDLKSNIISLGQATEAGCDVRMKDDQL-TLHDREGCLLLRATRSRNRLYKV-- 392
Query: 62 FELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQ 121
+L + VKCL +L A+M + +LV G+ + + C +C
Sbjct: 393 -DLNVENVKCL------------QLEAATM------VRKELVIGISNIPKEKET-CGSCL 432
Query: 122 KGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
GK + F S+ LEL+H DL GP+ + KRY +V++DD++R+ W +
Sbjct: 433 LGKQARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLK 492
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
K E+ F F +V+ E+ +I R+D GG F + +F+ GI + P TPQ
Sbjct: 493 EKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTAPYTPQ 552
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QNGVVER+NRTL M+R++L+ + M + W EAV S YI NR+ R + N+TPYE++K+
Sbjct: 553 QNGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEVFKQ 612
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
KPN+ + FGC+ YA L K D +S + LG SK +R+ + + I ++
Sbjct: 613 RKPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKIIKWN 672
Query: 362 HVRFDDK-LDSDQSKLVEKFVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQPQKK--- 417
+ + + + S + +F + I SD + + E E+S EE G ++ Q++
Sbjct: 673 NSDSETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEGENEHNEQEQIDA 732
Query: 418 SRIVASHPKELILGNKDEPVRTRSAFRPS-------------EETLLSLKGLVSLIEPKS 464
SH L + TR +P+ E+ LL++ EP
Sbjct: 733 EETQPSHATPLPTLRRS----TRQVGKPNYLDDYVLMAEIEGEQVLLAIND-----EPWD 783
Query: 465 IDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
EA + K+W A +EE+ KN W+++ P +IG KWVF+ K N G + + KA
Sbjct: 784 FKEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSINKYKA 843
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEV 584
RLVA+GY Q+ GIDY E FA VAR+E IR++I+ + ++ +H +DVK+ FL+G + E+V
Sbjct: 844 RLVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELREDV 903
Query: 585 YVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKT 643
YV QP GF ++ N V+ L K+LYGLKQAPRAW +L + L E FV+ + +++ +
Sbjct: 904 YVTQPEGFTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYRRQ 963
Query: 644 YKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATY 703
+ +LIV IYVDD++ ++ L F + M +FEMS +G+L Y+LGI+V
Sbjct: 964 EEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNGII 1023
Query: 704 IHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASR 763
+ Q +Y +++++ M+ M L K + ++ YR MI Y+ +R
Sbjct: 1024 LRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIGCLRYIVHTR 1083
Query: 764 PDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAG 823
PD+ + + +R+ PRE+H +K++LRYLKGT + GL K+ + L GY D+ ++
Sbjct: 1084 PDLSYCVGVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDSSHSA 1143
Query: 824 DRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQL-EDY 882
D + KST+G+ +L ++W S++Q +ALS+ EAE+++ +W++ E
Sbjct: 1144 DLDDGKSTAGHIFYLHQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVC 1203
Query: 883 QILESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSA 942
+ I DN +AI+L+KN + H R+K+I +YHFIR+ V+ + A
Sbjct: 1204 GTTSEKVMIRVDNKSAIALTKNLVFHGRSKHIHRRYHFIRECVENNLVEVDHVPGVEQRA 1263
Query: 943 DIFTKPLAEDRFK 955
DI TKPL +F+
Sbjct: 1264 DILTKPLGRIKFR 1276
>At1g37110
Length = 1356
Score = 494 bits (1273), Expect = e-140
Identities = 327/1014 (32%), Positives = 515/1014 (50%), Gaps = 78/1014 (7%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYD---------IIFNQKSCRAVSQIDGSVLFNSKRR 53
++NV V L NL+S L GY N K+ S +G + +
Sbjct: 364 LENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDG--- 420
Query: 54 NNTYKIRLFELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLV--RGLPTLKF 111
+T L ET KVK L W H RLGH SM + L L+ + + L+F
Sbjct: 421 -STVMSELCNAETDKVKTAL------W--HSRLGHMSMNNLKVLAGKGLIDRKEINELEF 471
Query: 112 SSDALCEACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFG-PVKTESIGGKRYGMVIVDD 170
CE C GK KVSF S L +H DL+G P T SI GK+Y + I+DD
Sbjct: 472 -----CEHCVMGKSKKVSFNVGKHTSEDA-LSYVHADLWGSPNVTPSISGKQYFLSIIDD 525
Query: 171 YSRWTWVKFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGI 230
+R W+ F+ KDE+ F + V+N+ ++ +R+D+G F N +F+S +GI
Sbjct: 526 KTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGI 585
Query: 231 AYDFSCPRTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPI 290
+C TPQQNGV ER NRT+ E R +L + + + FWAEA T+ Y+ NR I
Sbjct: 586 ERHRTCTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAI 645
Query: 291 LNKTPYELWKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIY 350
+ P E+W KP + FG + Y + +L ++ K LGY +KG++++
Sbjct: 646 NHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKLKP---RALKGFFLGYPAGTKGYKVW 702
Query: 351 NTDAK-------------TIEEYIHVRFDDKLDSDQSKLVE------KFVDMS-----IN 386
+ + + + V+ DD + +Q + KF + S I
Sbjct: 703 LLEEEKCVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQ 762
Query: 387 VSDKGKAPEEAEPEEDSPEEVGPSDPQ---PQKKSRIVASHPKELILGNKDEPVRTRSAF 443
+ + E E DS EEV S+ P++ ++ + N + P R F
Sbjct: 763 LQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTR----F 818
Query: 444 RPSEETLLSLKGLVSLI--EPKSIDEALQDKD---WILAMEEELNQFSKNDVWNIVKKPQ 498
+L + + I EP+S EA++ +D W +A +E++ KN W++V KP+
Sbjct: 819 TEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPK 878
Query: 499 GVHIIGTKWVFRNKLNEKG-DVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLIS 557
IIG +W+F+ K G + R KARLVA+GY Q+EG+DY E FAPV + +IR+L+S
Sbjct: 879 DRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMS 938
Query: 558 FSVNHNIILHQMDVKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRA 617
V+ ++ L QMDVK+ FL+G + EE+Y+ QP GF + + + V LKKSLYGLKQ+PR
Sbjct: 939 LVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQ 998
Query: 618 WYERL-RFLLENEFVRGKVDTTLFCKTYKD-DILIVQIYVDDIIFGSANSSLCKEFSEMM 675
W +R RF+ +F+R + D ++ K + D + + +YVDD++ A+ + E +
Sbjct: 999 WNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQL 1058
Query: 676 QAEFEMSMMGELKYFLGIQV--DQTPEATYIHQSKYTKELLKKFNMTESIIAKTLM---H 730
EFEM MG LGI + D+ + Q Y +++L +FNM+ + + +
Sbjct: 1059 STEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHF 1118
Query: 731 PTCILEKEDASGKVCQKLYRGMICSFLY-LTASRPDILFSEHLCARFQSDPRETHLTVVK 789
+ +ED Y + S +Y + +RPD+ ++ L +R+ S P H VK
Sbjct: 1119 KLAAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVK 1178
Query: 790 RILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKR 849
++RYLKG +L L++ K ++ ++GYCD++YA D R+S SG +G N VSW +
Sbjct: 1179 WVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASL 1238
Query: 850 QSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 909
Q +A+ST EAEYI++A +W+K L+D + + + I+CD+ +AI LSKN + H
Sbjct: 1239 QPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHE 1298
Query: 910 RAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFILKNLNM 963
R K+I+V++++IRD V+ G + + N D TK + ++FK L L +
Sbjct: 1299 RTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVLKL 1352
>At3g45520 copia-like polyprotein
Length = 1363
Score = 491 bits (1263), Expect = e-138
Identities = 321/1002 (32%), Positives = 506/1002 (50%), Gaps = 54/1002 (5%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
+ NV + ++ NLLS+ G+ R S G+ + RR +T I
Sbjct: 372 LQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKS---GNQVLLEGRRYDTLYILHG 428
Query: 63 ELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQK 122
+ T + + N++ + HRRL H S + +S L K L K S CE C
Sbjct: 429 KPATDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGF---LDKKKVSMLDTCEDCIY 485
Query: 123 GKFTKVSFKAKNVVSTSRPLELLHIDLFG-PVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
G+ K+ F T + LE +H DL+G P S+G +Y + +DDY+R WV F+
Sbjct: 486 GRAKKIGFNLAQH-DTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFLK 544
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
KDE+ F ++I V+N++ R+ +R+D+G F N F+ + G +C TPQ
Sbjct: 545 TKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQ 604
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QNGVVER NRT+ E R+ML + + K FWAEA +T+ + N+ I + P + W
Sbjct: 605 QNGVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINFEFPDKRWSG 664
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
P SY +GCV + +L+ ++ K +L+GY KG++++ + K
Sbjct: 665 KAPIYSYLRRYGCVTFVHTDGGKLNL---RAKKGVLIGYPSGVKGYKVWLIEEKKCVVSR 721
Query: 362 HVRFDDKLDSDQSKLVEKFVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQ----PQKK 417
+V F + ++ L+++ +S D + + + E D G Q P +
Sbjct: 722 NVSFQE--NAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSGGEQSQAQVTPATR 779
Query: 418 SRIVASHPK------------------ELILGNKDEPVRTRSAFRPSE---ETLLSLKGL 456
+ ++ P+ L+ + +R F + E L + +
Sbjct: 780 GAVTSTPPRYETDDIEETDVHQSPLSYHLVRDRERREIRAPRRFDDEDYYAEALYTTED- 838
Query: 457 VSLIEPKSIDEALQDKDWI---LAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKL 513
+EP EA++D++W LAM EE+ KND W V +P+ IIG++W+++ K
Sbjct: 839 GDAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRWIYKYKQ 898
Query: 514 NEKG-DVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVK 572
G + R KARLVA+GY Q+EG+DY E FAPV + +IR+L+S N+ L Q+DVK
Sbjct: 899 GIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELEQLDVK 958
Query: 573 SVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLR-FLLENEFV 631
+ FL+G + E++Y+ P G E + V L KSLYGLKQAPR W E+ ++ E F
Sbjct: 959 TAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYMTEIGFK 1018
Query: 632 RGKVDTTLFCKTYKDD-ILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYF 690
R D+ + K DD + + YVDD++ + N + + +FEM +G K
Sbjct: 1019 RSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKI 1078
Query: 691 LGIQV--DQTPEATYIHQSKYTKELLKKFNMTESIIAKT-----LMHPTCILEKEDASGK 743
LGI++ D+ ++ Q Y ++LK FNM ES A T L + EK +
Sbjct: 1079 LGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEE 1138
Query: 744 VCQKL-YRGMICSFLY-LTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNL 801
+ Y + S +Y + +RPD+ + + +RF S P + H VK +LRY+KGT +
Sbjct: 1139 YMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGTVDT 1198
Query: 802 GLLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 861
L YK+ S++ + GYCDADYA D +R+S +G LG N +SW S Q +A S+ E E
Sbjct: 1199 RLCYKRNSDFSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECE 1258
Query: 862 YISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFI 921
Y+S+ +W+K L+D+ + N+ I+CD+ +AI+LSKN + H R K+I+VK+HFI
Sbjct: 1259 YMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFHFI 1318
Query: 922 RDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFILKNLNM 963
R+ + G S + N ADIFTK L ++F+ L L +
Sbjct: 1319 REIIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFLRV 1360
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 478 bits (1229), Expect = e-135
Identities = 319/1000 (31%), Positives = 517/1000 (50%), Gaps = 51/1000 (5%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
+ NV + ++ NLLS+ GY + +S I G + + RR T + +
Sbjct: 343 LTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGT---LSIIAGDSVLLTVRRCYTLYLLQW 399
Query: 63 ELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQK 122
T++ ++ ++ + HRRLGH S + + L K L L K S CE C
Sbjct: 400 RPVTEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGL---LDKKKVSKLETCEDCIY 456
Query: 123 GKFTKVSFKAKNVVSTSRPLELLHIDLFG-PVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
GK ++ F T LE +H DL+G P S+G +Y + +DDY+R + F+
Sbjct: 457 GKAKRIGFNLAQH-DTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLK 515
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
KDE+ F + V+N+ RI +R+D+G F N F+ GI + +C TPQ
Sbjct: 516 TKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQ 575
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
QNGV ER NRTL E R+ML + + K FWAEA +T+ + N+ + + P + W
Sbjct: 576 QNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSG 635
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
P SY FGC+ + ++T D K + ++ K +L+GY KG++I+ + K
Sbjct: 636 KSPIYSYLRRFGCIAF-VHTDDG--KLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSR 692
Query: 362 HVRFDDKL---DSDQSKLVEK---------FVDMSIN----VSDKGKAP--EEAEPEEDS 403
+V F + D QSK EK ++D+ ++ ++ G P E P S
Sbjct: 693 NVIFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPS 752
Query: 404 PEEVGPSDPQPQKKSRIVASHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSL---- 459
P ++ I+ S ++ ++D R+ R +E L+ + L +
Sbjct: 753 PATTQTYSEGVNSETDIIQSPLSYQLVRDRDRRT-IRAPVRFDDEDYLA-EALYTTEDSG 810
Query: 460 -IEPKSIDEALQDKDWI---LAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNE 515
IEP EA + +W LAM EE+ KN W +VK+PQ +IG++W+++ KL
Sbjct: 811 EIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGI 870
Query: 516 KG-DVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSV 574
G + R KARLVA+GY Q++GIDY E FAPV + +IR+L+S ++ L Q+DVK+
Sbjct: 871 PGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTA 930
Query: 575 FLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLR-FLLENEFVRG 633
FL+G + E++Y+ P G+E+ D V L KSLYGLKQAP+ W E+ ++ E F+R
Sbjct: 931 FLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRS 990
Query: 634 KVDTTLFCKTYKDDILI-VQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLG 692
D+ + K D + + +YVDD++ + N + E + F+M +G K LG
Sbjct: 991 LYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILG 1050
Query: 693 IQVDQTPEAT--YIHQSKYTKELLKKFNMTESIIAKT-----LMHPTCILEKEDASGKVC 745
+++ + E ++ Q+ Y ++L+ +NM ES T L +EK++
Sbjct: 1051 MEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYM 1110
Query: 746 QKL-YRGMICSFLY-LTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGL 803
+ + Y + S +Y + +RPD+ + + +R+ S P H VK +LRY+KG+ L
Sbjct: 1111 KSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLGTKL 1170
Query: 804 LYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYI 863
YK++S++K+ GYCDAD+A + R+S +G LG + +SW S +Q +ALST EAEY+
Sbjct: 1171 QYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYM 1230
Query: 864 SIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRD 923
S+ +WMK L+++ + ++ I+CD+ +AI+LSKN + H R K+I+V+Y +IRD
Sbjct: 1231 SLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRD 1290
Query: 924 YVQKGYFF*SSLILTINSADIFTKPLAEDRFKFILKNLNM 963
+ G + N ADIFTK + ++F+ L L +
Sbjct: 1291 IIANGDGDVVKIDTEKNPADIFTKIVPVNKFQAALTLLQV 1330
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 473 bits (1216), Expect = e-133
Identities = 319/1007 (31%), Positives = 507/1007 (49%), Gaps = 61/1007 (6%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
+ +V + + NL+S+ L D+G + V S + ++R+ Y +
Sbjct: 341 LTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGC--STILKGQKRDTLYILDGV 398
Query: 63 ELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRG--LPTLKFSSDALCEAC 120
E + V +E + H RLGH S + + L K +R + L+F CE C
Sbjct: 399 TEEGESHSSA-EVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEF-----CEDC 452
Query: 121 QKGKFTKVSFKAKNVVSTSRPLELLHIDLFG-PVKTESIGGKRYGMVIVDDYSRWTWVKF 179
GK +VSF V T L +H DL+G P S+G +Y + VDDYSR W+ F
Sbjct: 453 VYGKQHRVSFAPAQHV-TKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYF 511
Query: 180 ISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRT 239
+ +KDE+ F + V+N++ ++ ++R+D+G + N FE GI +C T
Sbjct: 512 LRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYT 571
Query: 240 PQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELW 299
PQQNG+ ER NRT+ + R+ML M K FWAEA +T+ Y+ NR I P E W
Sbjct: 572 PQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKW 631
Query: 300 KKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEE 359
P++S FGC+ Y + +L + +S K + Y + KG++++ + K
Sbjct: 632 TGALPDLSSLRKFGCLAYIHADQGKL---NPRSKKGIFTSYPEGVKGYKVWVLEDKKCVI 688
Query: 360 YIHVRF-------DDKLDSDQSKLVEKFVDMSIN-------VSDKGKA------PEEA-- 397
+V F D K DS + D+ +N +D+G A P EA
Sbjct: 689 SRNVIFREQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATT 748
Query: 398 --EPEEDSPEEVGPSDPQPQKKSRIVASHPKELILGNKDEPVRTRSAFRPSEETLLSLKG 455
P +SP + + + + +L+ ++ + S +
Sbjct: 749 SHNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYS 808
Query: 456 L-VSLIEPKSIDEALQDKD---WILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRN 511
EPKS EAL D D W AM+EE+ SKN W++V KP+ V +IG +WVF
Sbjct: 809 EDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTR 868
Query: 512 KLNEKG-DVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMD 570
K G + R ARLVA+G+ Q+EG+DY E F+PV + +IR L+S V++N+ L QMD
Sbjct: 869 KAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMD 928
Query: 571 VKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENE 629
VK+ FL+G++ EE+Y+ QP GFE ++ + V LK+SLYGLKQ+PR W R F+ +
Sbjct: 929 VKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIK 988
Query: 630 FVRGKVDTTLFCKTYKDDILI-VQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELK 688
+ R D+ ++ K D I + +YVDD++ SAN S E +++ EFEM +G+ K
Sbjct: 989 YTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAK 1048
Query: 689 YFLGIQVDQTPEA--TYIHQSKYTKELLKKFNMTESIIAKTLMHPTCI---------LEK 737
LG+++ + +A + Q Y K++L+ F M AK + P I E
Sbjct: 1049 KILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDN---AKPVSTPLGIHFKLKAATDKEY 1105
Query: 738 EDASGKVCQKLYRGMICSFLY-LTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLK 796
E+ ++ Y I S +Y + +RPD+ +S + +RF S P + H VK +LRY++
Sbjct: 1106 EEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMR 1165
Query: 797 GTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 856
GT L ++K ++ L GYCD+DY + R+S +G +G N +SW SK Q +A+S
Sbjct: 1166 GTEKKKLCFRKQEDFLLRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAIS 1225
Query: 857 TAEAEYISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKYIEV 916
+ EAEY+++ LW+K + + + ++ D+ +AI+L+KN + H R K+I++
Sbjct: 1226 STEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKNSVHHERTKHIDI 1285
Query: 917 KYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFILKNLNM 963
+ HFIRD + G + N A+IFTK + +F+ L L +
Sbjct: 1286 RLHFIRDIICAGLIKVVKIATECNPANIFTKTVPLAKFEGALNMLRV 1332
>At4g17450 retrotransposon like protein
Length = 1433
Score = 466 bits (1199), Expect = e-131
Identities = 290/979 (29%), Positives = 480/979 (48%), Gaps = 68/979 (6%)
Query: 14 HNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLFELETQKVKCLL 73
HN+L I + + + SQ+ + + N+T ++ +
Sbjct: 485 HNVLYIPEFKFNLISELTKELMIGRGSQVGNLYVLDFNENNHTVSLKGTTSMCPEFSVCS 544
Query: 74 SVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDA-----LCEACQKGKFTKV 128
SV + H+RLGH + KI L V L K + + +C C K +
Sbjct: 545 SVVVDSVTWHKRLGHPAYSKIDLLSD---VLNLKVKKINKEHSPVCHVCHVCHLSKQKHL 601
Query: 129 SFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFISRKDESHS 188
SF+++ + S +L+HID +GP + TW+ + K +
Sbjct: 602 SFQSRQNMC-SAAFDLVHIDTWGPFSVPTNDA--------------TWIYLLKNKSDVLH 646
Query: 189 VFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVER 248
VF FI V + ++ VRSD+ KF LF ++GI SCP TP+QN VVER
Sbjct: 647 VFPAFINMVHTQYQTKLKSVRSDNAHEL---KFTDLFAAHGIVAYHSCPETPEQNSVVER 703
Query: 249 KNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISY 308
K++ + ++R +L + ++ FW + V T+ ++ NR+ + NK+PYE K + P
Sbjct: 704 KHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYES 763
Query: 309 FHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYIHVRFDDK 368
FGC+CY+ + + HKF+ ++ C+ LGY KG+++ + + + HV F +
Sbjct: 764 LKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHED 823
Query: 369 LDSDQSKLVEKFVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQPQKKSRIVASHPKEL 428
+ F+ +I K P P +D P +++ I+ +HP +
Sbjct: 824 --------IFPFISSTIKDDIKDFFPLLQFPAR--------TDDLPLEQTSIIDTHPHQD 867
Query: 429 ILGNKD----EPVRTRSAFRP------------SEETLLSLKGLVSLIEPKSIDEALQDK 472
+ +K +P+ R P +E + + + + P+ EA K
Sbjct: 868 VSSSKALVPFDPLSKRQKKPPKHLQDFHCYNNTTEPFHAFINNITNAVIPQRYSEAKDFK 927
Query: 473 DWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQGYR 532
W AM+EE+ + + W++V P IG KWVF K N G + R KARLVA+GY
Sbjct: 928 AWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYT 987
Query: 533 QQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPPGF 592
Q+EG+DY ETF+PVA+L ++R+++ + +HQ+D+ + FLNG + EE+Y+ PPG+
Sbjct: 988 QEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGY 1047
Query: 593 ED---EKNPDH-VFNLKKSLYGLKQAPRAWYERLRFLLENE-FVRGKVDTTLFCKTYKDD 647
D E P H + L KS+YGLKQA R WY +L L+ F + D TLF K
Sbjct: 1048 ADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGV 1107
Query: 648 ILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQS 707
++ V +YVDDI+ S + +F+ +++ F++ +G KYFLGI++ ++ + I Q
Sbjct: 1108 LMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQR 1167
Query: 708 KYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRPDIL 767
KY ELL S + + P+ L KED YR ++ +YL +RPDI
Sbjct: 1168 KYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIA 1227
Query: 768 FSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTE 827
++ + +F P HL+ V ++LRYLKGT GL Y ++ L GY D+D+
Sbjct: 1228 YAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDS 1287
Query: 828 RKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQILES 887
R+ + C F+G LVSW SK+Q T+++STAEAE+ +++ M+W+ +D+++
Sbjct: 1288 RRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKV--P 1345
Query: 888 NIP---IYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADI 944
IP +YCDNTAA+ + N + H R K++E+ + R+ V+ G+ + AD
Sbjct: 1346 FIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADP 1405
Query: 945 FTKPLAEDRFKFILKNLNM 963
TK + +F ++ + +
Sbjct: 1406 LTKAIHPAQFHKLIGKMGV 1424
>At4g03810 putative retrotransposon protein
Length = 964
Score = 466 bits (1198), Expect = e-131
Identities = 316/977 (32%), Positives = 490/977 (49%), Gaps = 58/977 (5%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCR--AVSQIDGSVLFNSKRRNNTYKIR 60
+ N V +N N++S+S L +G+ K C GS ++ +
Sbjct: 5 LKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQSMP 64
Query: 61 LFELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEAC 120
++ + T+K K W H RLGH + + I KL L + + S CE+C
Sbjct: 65 IYNIRTKKFKSNDLNPTFLW--HCRLGHINEKHIQ---KLHSDGLLNSFDYESYETCESC 119
Query: 121 QKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFI 180
GK TK F + S L L+H D+ GP+ T + G +Y + DD+SR+ +V +
Sbjct: 120 LLGKMTKAPFTGHSE-RASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLM 178
Query: 181 SRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTP 240
K +S F F +VQN+ I +RSD GG + + F GI + P TP
Sbjct: 179 KHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTP 238
Query: 241 QQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWK 300
Q NGV ER+NRTL +M R+M+ D+ FW A+ TS ++ NR + + KTPYE+W
Sbjct: 239 QWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSV-EKTPYEIWT 297
Query: 301 KVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYN-TDAKTIE- 358
PN+S+ +GC YA K KS KC +GY K +KG+ Y+ TD K
Sbjct: 298 GKVPNLSFLKIWGCESYAKRLIT--DKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVV 355
Query: 359 ---EYIHVRFDDKLDSDQSKLVEKFVDMSINVSDKGKAPEEAEPEE-DSPEEVGPSDPQP 414
++ F K S L+E+ + +G P E + D V P +P
Sbjct: 356 RNGAFLEREFLSKGTSGSKVLLEEVRE------PQGDVPTSQEEHQLDLRRVVEPILVEP 409
Query: 415 QKKSRIVASHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKD- 473
+ + + H EP R R + + EP S +EAL D
Sbjct: 410 EVRRSERSRH----------EPDRFRDWVMDDHALFM-----IESDEPTSYEEALMGPDS 454
Query: 474 --WILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQGY 531
W+ A + E+ S+N VW +V P GV I KW+F+ K++ G++ KA LVA+GY
Sbjct: 455 DKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGY 514
Query: 532 RQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPPG 591
+Q GIDY ET++PVA L++IR+L++ + +++ + QMDVK+ FLNG + E VY+ QP G
Sbjct: 515 KQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEG 574
Query: 592 FEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRF---LLENEFVRGKVDTTLFCKTYKDDI 648
F + V L +S+YGLKQA R+W LRF + E +F+R + + ++ KT +
Sbjct: 575 FTVPEAARKVCKLHRSIYGLKQASRSW--NLRFNEAIKEFDFIRNEEEPCVYKKTSGSAV 632
Query: 649 LIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQV--DQTPEATYIHQ 706
+ +YVDDI+ + L + + + F M MGE Y LGI++ D+ + + Q
Sbjct: 633 AFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQ 692
Query: 707 SKYTKELLKKFNMTESIIAKTLMHPTCILEK------EDASGKVCQKLYRGMICSFLY-L 759
Y ++L +FNM +S M L K D ++ + Y I S +Y +
Sbjct: 693 DTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAM 752
Query: 760 TASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDA 819
+RPD+ + + +R+QSDP E+H VV+ I +YL+ T + L+Y + E +SGY DA
Sbjct: 753 LYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDA 812
Query: 820 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQL 879
+ D+ + +S SG L VSW S +QST+A ST EAEYI+ + ++W++ +
Sbjct: 813 SFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFI 872
Query: 880 EDYQILES---NIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLI 936
+ ++ S I +YCDN AI+ +K P H ++K+I+ +YH IR+ + +G S +
Sbjct: 873 TELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVS 932
Query: 937 LTINSADIFTKPLAEDR 953
N AD FTKPL + +
Sbjct: 933 TDANVADHFTKPLPQPK 949
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 454 bits (1168), Expect = e-127
Identities = 307/1001 (30%), Positives = 511/1001 (50%), Gaps = 69/1001 (6%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
+ +V + ++ NL+S+ L DKG ++K + + D +VL K+ + Y ++
Sbjct: 368 LTDVRYIPEMSKNLISLGTLEDKGC-WFESKKGILTIFKNDLTVL-TGKKESTLYFLQGT 425
Query: 63 ELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQK 122
L + + +E + H RLGH +GL L K
Sbjct: 426 TLAGE-ANVIDKEKDETSLWHSRLGHIG------------AKGLQVL----------VSK 462
Query: 123 GKFTK---VSFKAKNVVSTSRPLELLHIDLFGPVKTE-SIGGKRYGMVIVDDYSRWTWVK 178
G K +SF A V+ + L+ +H DL+G SIG +Y + +DD++R TW+
Sbjct: 463 GHLDKNIMISFGAAKHVTKDK-LDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIY 521
Query: 179 FISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPR 238
FI KDE+ S F + Q++N+ ++ + +D+G F N +F+S G+ +C
Sbjct: 522 FIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAY 581
Query: 239 TPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYEL 298
TPQQNGV ER NRT+ R ML E + K FWAEA +T+ ++ N+ I P E
Sbjct: 582 TPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEK 641
Query: 299 WKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNT-DAKTI 357
W P+ FG V Y + + +L+ ++ K + LGY K F+++ D K +
Sbjct: 642 WTGHPPDYKILKKFGSVAYIHSDQGKLNP---RAKKGIFLGYPDGVKRFKVWLLEDRKCV 698
Query: 358 EEYIHVRFDDKLDSDQSKLVEKFVDMSINVSDKGKAP-EEAEPEEDSPEEVGPSDPQPQK 416
V ++++ + K D + ++ + ++++ E G + Q Q
Sbjct: 699 VSRDIVFQENQMYKELQKNDMSEEDKQLTEVERTLIELKNLSADDENQSEGGDNSNQEQA 758
Query: 417 KSRIVASHPKELILGNKDEP---------------VRTRSAFRPSEETLLSLKGLVS--- 458
+ AS K++ + D+ +R F +++L+ ++
Sbjct: 759 STTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDG 818
Query: 459 -LIEPKSIDEALQDKD---WILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLN 514
+ EP++ +EA++ + W A EE++ KND W+++ KP+G +IG KW+F+ K
Sbjct: 819 EVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAG 878
Query: 515 EKG-DVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKS 573
G + R KARLVA+G+ Q+EGIDY E F+PV + +IR L+S V ++ L Q+DVK+
Sbjct: 879 IPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKT 938
Query: 574 VFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVR 632
FL+G + E + + QP G+EDE + + V LKKSLYGLKQ+PR W +R F++ + + R
Sbjct: 939 AFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQR 998
Query: 633 GKVDTTLFCKTYKDDILI-VQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFL 691
K + ++ + D I + +YVDD++ S N ++ E + EFEM +G + L
Sbjct: 999 SKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKIL 1058
Query: 692 GIQVDQTPEATYIH--QSKYTKELLKKFNMTESIIAKTLMHPTCIL----EKEDASGKVC 745
G+++ + E + QS+Y +L+ F M +S +++T + L EK A
Sbjct: 1059 GMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLARDAEY 1118
Query: 746 QKL--YRGMICSFLY-LTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLG 802
KL Y I S +Y + SRPD+ + + +RF S P + H VK ++RY+KGT +
Sbjct: 1119 MKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTC 1178
Query: 803 LLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEY 862
L +KK ++++ GYCD+DYA D R+S +G G N +SW S Q +ALST EAEY
Sbjct: 1179 LRFKKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEY 1238
Query: 863 ISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIR 922
+++A +W++ + + + + CD+ +AI+LSKN + H R K+I+V+YHFIR
Sbjct: 1239 MALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIR 1298
Query: 923 DYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFILKNLNM 963
+ + G + T N ADIFTK + + + LK L +
Sbjct: 1299 EKIADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLLRV 1339
>At1g26990 polyprotein, putative
Length = 1436
Score = 454 bits (1167), Expect = e-127
Identities = 299/987 (30%), Positives = 486/987 (48%), Gaps = 73/987 (7%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYD-IIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRL 61
+ NVL + NLLS+S L + F C + +L + N Y + L
Sbjct: 473 LHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNL 532
Query: 62 FELETQ------KVKCLLSVNE-EQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSD 114
+ K C NE E W H+RLGH S KI L V LP K + D
Sbjct: 533 DKSLVDVSSFPGKSVCSSVKNESEMW--HKRLGHPSFAKID---TLSDVLMLPKQKINKD 587
Query: 115 AL-CEACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 173
+ C C K + FK+ N + + EL+HID +GP ++ RY + IVDD+SR
Sbjct: 588 SSHCHVCHLSKQKHLPFKSVNHIR-EKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSR 646
Query: 174 WTWVKFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYD 233
TW+ + +K + +VF +F+ V+ + ++ VRSD+ KF LF GI D
Sbjct: 647 ATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHEL---KFNELFAKEGIKAD 703
Query: 234 FSCPRTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNK 293
CP TP+QN VVERK++ L ++R ++ + + +W + V T+ ++ NR+ I N+
Sbjct: 704 HPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNE 763
Query: 294 TPYELWKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTD 353
TPYE K KP+ S FGC+CY + KFD ++ C+ LGY KG+++ + +
Sbjct: 764 TPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIE 823
Query: 354 AKTIEEYIHVRF-DDKLDSDQSKLVEKFVDMSINVSDKGKAPEEAEP------------E 400
++ HV F +D S + + D ++ +E P +
Sbjct: 824 TYSVSISRHVIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDAPHNHD 883
Query: 401 EDSPEEVGPSDPQPQKKSRIVASHPKELILGNKDEPVRTRSAFRP----------SEETL 450
E S PS+P+ ++ ++ SH ++ N + P T+++ P SE
Sbjct: 884 ESSSMIFVPSEPKSTRQRKL-PSHLQDFHCYN-NTPTTTKTSPYPLTNYISYSYLSEPFG 941
Query: 451 LSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFR 510
+ + + P+ EA DK W AM +E++ F + W+I P G +G KW+
Sbjct: 942 AFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIIT 1001
Query: 511 NKLNEKGDVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMD 570
K G + R+KARLVA+GY QQEGID+ TF+PVA++ +++L+S + LHQ+D
Sbjct: 1002 IKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLAPKMKWYLHQLD 1061
Query: 571 VKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEF 630
+ + LNG + EE+Y+ PPG+ + + G + +P A
Sbjct: 1062 ISNALLNGDLEEEIYMKLPPGYSE-------------IQGQEVSPNA------------- 1095
Query: 631 VRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYF 690
+ D TLF K L+V +YVDDI+ S + E + + + F++ +GE K+F
Sbjct: 1096 -KCHGDHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFF 1154
Query: 691 LGIQVDQTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYR 750
LGI++ + + + Q KY +LL + ++ + M P L K+ + K YR
Sbjct: 1155 LGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYR 1214
Query: 751 GMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSE 810
++ YL +RPDI F+ A++ S P + HL + +ILRYLKGT GL Y +
Sbjct: 1215 RILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTN 1274
Query: 811 YKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT 870
+ L G+ D+D+ R+ +G F+G++LVSW SK+Q +++S+AEAEY ++++
Sbjct: 1275 FDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATK 1334
Query: 871 *MLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGY 929
++W+ + L ++I +YCDN AA+ ++ N + H R K+IE H +R+ ++ G
Sbjct: 1335 ELIWLGYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAG- 1393
Query: 930 FF*SSLILTINS-ADIFTKPLAEDRFK 955
+ + T N AD TKPL F+
Sbjct: 1394 ILKTIFVRTDNQLADTLTKPLYPKPFR 1420
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,892,064
Number of Sequences: 26719
Number of extensions: 966191
Number of successful extensions: 3133
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2477
Number of HSP's gapped (non-prelim): 278
length of query: 967
length of database: 11,318,596
effective HSP length: 109
effective length of query: 858
effective length of database: 8,406,225
effective search space: 7212541050
effective search space used: 7212541050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0101.5