BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0101.12
         (310 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g04420 putative transposon protein                                 180  8e-46
At2g07080 putative gag-protease polyprotein                           163  1e-40
At2g05930 copia-like retroelement pol polyprotein                     137  6e-33
At3g59720 copia-type reverse transcriptase-like protein               123  1e-28
At1g48710 hypothetical protein                                        122  2e-28
At1g58140 hypothetical protein                                        122  2e-28
At3g61330 copia-type polyprotein                                      120  7e-28
At4g04560 putative transposon protein                                 120  9e-28
At3g60170 putative protein                                            110  7e-25
At2g15650 putative retroelement pol polyprotein                       100  2e-21
At1g32590 hypothetical protein, 5' partial                             97  9e-21
At2g05390 putative retroelement pol polyprotein                        87  2e-17
At3g25450 hypothetical protein                                         86  2e-17
At1g36110 hypothetical protein                                         84  7e-17
At3g31380 hypothetical protein                                         73  2e-13
At3g21040 hypothetical protein                                         73  2e-13
At2g05960 putative retroelement pol polyprotein                        70  1e-12
At3g21030 hypothetical protein                                         67  2e-11
At3g21050 hypothetical protein                                         62  3e-10
At5g56830 unknown protein                                              57  1e-08

>At4g04420 putative transposon protein
          Length = 1008

 Score =  180 bits (457), Expect = 8e-46
 Identities = 95/298 (31%), Positives = 170/298 (56%), Gaps = 21/298 (7%)

Query: 1   MIAFLKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNA 60
           M A ++ +  + W A   GWK PV    +G       K +D+   AEE  +  NS+A++ 
Sbjct: 28  MRALIRGLGKEAWIATSIGWKAPV---IKGEDGEDVLKTKDQWNDAEEAKAKANSRALSL 84

Query: 61  IFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERIS 120
           IFN V++N F+ I  C  AK+AW+ L   +EGT+ V+ SR+ ML ++FENL+M E E I 
Sbjct: 85  IFNFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEETENIE 144

Query: 121 EYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIG 180
           E+  ++  +++ +  LG+   D+KLV+K+LR + S+F  K  A+  + D  S+  +E++G
Sbjct: 145 EFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDSIDFEEVVG 204

Query: 181 SLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFNRALRKIDRR 240
            LQ Y+L++       +K +A  ++  +     +E + L + ++++A+ F+RA+R+++++
Sbjct: 205 MLQAYELEITSGKGGYSKGLALAASAKK-----NEIQELKDTMSMMAKDFSRAMRRVEKK 259

Query: 241 TRPNVQDIKSDNSKSYNSQRKVKEEDKSGQNKGVQCHECEGYGHIRSECATYLKKQKK 298
                            +Q   +  D+S +   +QCHEC+GYGHI++EC +  +K  K
Sbjct: 260 -------------GFGRNQGTDRYRDRSSKRDEIQCHECQGYGHIKAECPSLKRKDLK 304


>At2g07080 putative gag-protease polyprotein
          Length = 627

 Score =  163 bits (412), Expect = 1e-40
 Identities = 91/275 (33%), Positives = 154/275 (55%), Gaps = 20/275 (7%)

Query: 24  VKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNAIFNAVDKNMFRLINTCTVAKDAW 83
           ++ Q +G   T   KP+   T+ E+  S  N++AM AIFN VD++ F+LI  C  AK AW
Sbjct: 32  IRGQEDGFKIT---KPKANWTAEEKLQSKFNARAMKAIFNGVDEDEFKLIQGCKSAKQAW 88

Query: 84  EILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERISEYHMRVRDLSNASFALGEPMSDE 143
           + L+ +HEGT+ V+ +RL  + T+FE L M  DE+I ++  ++  L+N +  +G+   D+
Sbjct: 89  DTLQKSHEGTSSVKRTRLDHIATQFEYLKMEPDEKIVKFSSKISALANEAEVMGKTYKDQ 148

Query: 144 KLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIGSLQTYKLKLGEKPEKKTKSIAFV 203
           KLV+K+LR +  KFA     +  A +   +   +L+G L+  ++K  +   K +K+IAF 
Sbjct: 149 KLVKKLLRCLPPKFAAHKAVMRVAGNTDKISFVDLVGMLKLEEMKADQDKVKPSKNIAF- 207

Query: 204 SNTTEGDDADSESENLSEALALLARKFNRALRKIDRRTRPNVQDIKSDNSKSYNSQRKVK 263
                 D    + + + + +ALLAR F +AL+++         +I  + S+   S+    
Sbjct: 208 ----NADQGSEQFQEIKDGMALLARNFGKALKRV---------EIDGERSRGRFSR---S 251

Query: 264 EEDKSGQNKGVQCHECEGYGHIRSECATYLKKQKK 298
           E D   + K +QC+EC G+GHI+ EC    +K+ K
Sbjct: 252 ENDDLRKKKEIQCYECGGFGHIKPECPITKRKEMK 286


>At2g05930 copia-like retroelement pol polyprotein
          Length = 916

 Score =  137 bits (346), Expect = 6e-33
 Identities = 70/189 (37%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 1   MIAFLKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNA 60
           M A ++ +  + W A   GWK PV    +G       K ED+   AEE  +  NS+A++ 
Sbjct: 40  MRALIRGLGKEAWIATSIGWKAPV---IKGEDGEDVLKTEDQWNDAEEAKATANSRALSL 96

Query: 61  IFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERIS 120
           IFN+V++N F+ I  C  AK+AW+ L   +EGT+ V+ SR+ ML ++FENLTM E E I 
Sbjct: 97  IFNSVNQNQFKQIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMEETENIE 156

Query: 121 EYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIG 180
           E+  ++  +++ +  LG+   D+KLV+K+LR + S+F  K  A+  + D +S+  +E++G
Sbjct: 157 EFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTNSIDFEEVVG 216

Query: 181 SLQTYKLKL 189
             Q Y+L++
Sbjct: 217 MFQAYELEI 225


>At3g59720 copia-type reverse transcriptase-like protein
          Length = 1272

 Score =  123 bits (308), Expect = 1e-28
 Identities = 95/300 (31%), Positives = 152/300 (50%), Gaps = 23/300 (7%)

Query: 1   MIAFLKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNA 60
           M A L + D+  W+ V KG+  P   + EGS S  ++   D L  + +     + KA+  
Sbjct: 25  MKAILGAHDV--WEIVEKGFIEP---ENEGSLSQTQK---DGLRDSRKR----DKKALCL 72

Query: 61  IFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERIS 120
           I+  +D++ F  +   T AK+AWE L+T+++G  +V+  RLQ L   FE L M E E +S
Sbjct: 73  IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVS 132

Query: 121 EYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIG 180
           +Y  RV  ++N     GE + D +++ K+LRS+  KF   V  IEE +D+ ++ +++L+G
Sbjct: 133 DYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192

Query: 181 SLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFNRALRKIDRR 240
           SLQ Y+    EK +KK   +  V N     + + +S        +  R   R      R 
Sbjct: 193 SLQAYE----EKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGR--GRGGYGNGRG 246

Query: 241 TRPNVQDIKSDNSKSYNSQR-KVKEEDKSGQNK-GVQCHECEGYGHIRSECATYLKKQKK 298
            RP+     + N +  NS R + K   KS  +K  V+C+ C  +GH  SEC     K+ K
Sbjct: 247 WRPHED---NTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFK 303


>At1g48710 hypothetical protein
          Length = 1352

 Score =  122 bits (307), Expect = 2e-28
 Identities = 94/291 (32%), Positives = 149/291 (50%), Gaps = 23/291 (7%)

Query: 1   MIAFLKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNA 60
           M A L + D+  W+ V KG+  P   + EGS S  ++   D L  + +     + KA+  
Sbjct: 25  MKAILGAHDV--WEIVEKGFIEP---ENEGSLSQTQK---DGLRDSRKR----DKKALCL 72

Query: 61  IFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERIS 120
           I+  +D++ F  +   T AK+AWE L+T+++G  +V+  RLQ L   FE L M E E +S
Sbjct: 73  IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVS 132

Query: 121 EYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIG 180
           +Y  RV  ++N     GE + D +++ K+LRS+  KF   V  IEE +D+ ++ +++L+G
Sbjct: 133 DYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192

Query: 181 SLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFNRALRKIDRR 240
           SLQ Y+    EK +KK   I  V N     + + +S        +  R   R      R 
Sbjct: 193 SLQAYE----EKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGR--GRGGYGNGRG 246

Query: 241 TRPNVQDIKSDNSKSYNSQR-KVKEEDKSGQNK-GVQCHECEGYGHIRSEC 289
            RP+     + N +  NS R + K   KS  +K  V+C+ C  +GH  SEC
Sbjct: 247 WRPHED---NTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASEC 294


>At1g58140 hypothetical protein
          Length = 1320

 Score =  122 bits (306), Expect = 2e-28
 Identities = 93/291 (31%), Positives = 149/291 (50%), Gaps = 23/291 (7%)

Query: 1   MIAFLKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNA 60
           M A L + D+  W+ V KG+  P   + EGS S  ++   D L  + +     + KA+  
Sbjct: 25  MKAILGAHDV--WEIVEKGFIEP---ENEGSLSQTQK---DGLRDSRKR----DKKALCL 72

Query: 61  IFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERIS 120
           I+  +D++ F  +   T AK+AWE L+T+++G  +V+  RLQ L   FE L M E E +S
Sbjct: 73  IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVS 132

Query: 121 EYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIG 180
           +Y  RV  ++N     GE + D +++ K+LRS+  KF   V  IEE +D+ ++ +++L+G
Sbjct: 133 DYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192

Query: 181 SLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFNRALRKIDRR 240
           SLQ Y+    EK +KK   +  V N     + + +S        +  R   R      R 
Sbjct: 193 SLQAYE----EKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGR--GRGGYGNGRG 246

Query: 241 TRPNVQDIKSDNSKSYNSQR-KVKEEDKSGQNK-GVQCHECEGYGHIRSEC 289
            RP+     + N +  NS R + K   KS  +K  V+C+ C  +GH  SEC
Sbjct: 247 WRPHED---NTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASEC 294


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  120 bits (302), Expect = 7e-28
 Identities = 93/291 (31%), Positives = 148/291 (49%), Gaps = 23/291 (7%)

Query: 1   MIAFLKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNA 60
           M A L + D+  W+ V KG+  P   + EGS S  ++   D L  + +     + KA+  
Sbjct: 25  MKAILGAHDV--WEIVEKGFIEP---ENEGSLSQTQK---DGLRDSRKR----DKKALCL 72

Query: 61  IFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERIS 120
           I+  +D++ F  +   T AK+AWE L+T+++G  +V+  RLQ L   FE L M E E +S
Sbjct: 73  IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVS 132

Query: 121 EYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIG 180
           +Y  RV  ++N     GE + D +++ K+LRS+  KF   V  IEE +D+ ++ +++L+G
Sbjct: 133 DYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192

Query: 181 SLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFNRALRKIDRR 240
           SLQ Y+    EK +KK      V N     + + +S        +  R   R      R 
Sbjct: 193 SLQAYE----EKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGR--GRGGYGNGRG 246

Query: 241 TRPNVQDIKSDNSKSYNSQR-KVKEEDKSGQNK-GVQCHECEGYGHIRSEC 289
            RP+     + N +  NS R + K   KS  +K  V+C+ C  +GH  SEC
Sbjct: 247 WRPHED---NTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASEC 294


>At4g04560 putative transposon protein
          Length = 590

 Score =  120 bits (301), Expect = 9e-28
 Identities = 68/213 (31%), Positives = 113/213 (52%), Gaps = 7/213 (3%)

Query: 5   LKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNAIFNA 64
           ++SID+  W AV  GW  P    A+    +   K   E  + E+ A+  NS+A++ IF +
Sbjct: 364 IQSIDMDAWFAVEDGWMPPTTKDAKRDIVS---KSRTEWIADEKTAANHNSQALSVIFGS 420

Query: 65  VDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERISEYHM 124
           + +N F  +  C  AK+ WEIL+ + E T  V+ +RL ML + FENLTM  +E + +++ 
Sbjct: 421 LLRNKFTQVQGCLSAKEVWEILQVSFECTNNVKRTRLDMLASEFENLTMEAEESVDDFNG 480

Query: 125 RVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIGSLQT 184
           ++  ++  +  LG+   D+K+V+K LRS+  KF     AI+ + +   LK D+++G +Q 
Sbjct: 481 KLSSITQEAVVLGKTYKDKKMVKKFLRSLPDKFQSHKSAIDVSLNSDQLKFDQVVGMMQA 540

Query: 185 YKLKLGEKPEKKTKSIAFVSNTTEGDDADSESE 217
           Y        E+   S A      E DD   E +
Sbjct: 541 Y----DTDKEEILNSYATYFGAIEDDDHTVEED 569


>At3g60170 putative protein
          Length = 1339

 Score =  110 bits (276), Expect = 7e-25
 Identities = 84/293 (28%), Positives = 137/293 (46%), Gaps = 53/293 (18%)

Query: 4   FLKSIDIKTWKAVVKGWKHPVKAQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNAIFN 63
           FL+S ++  W+ V +G    + A   G+T   E +      SA EEA L++ K  N +F 
Sbjct: 29  FLRSREL--WRLVEEG----IPAIVVGTTPVSEAQ-----RSAVEEAKLKDLKVKNFLFQ 77

Query: 64  AVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERISEYH 123
           A+D+ +   I   + +K  WE +K  ++G+T+V+ ++LQ L   FE L M E E+I  + 
Sbjct: 78  AIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEGEKIDTFL 137

Query: 124 MRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIGSLQ 183
            R   + N     GE M    +V KILRS+T KF   V +IEE+ D+S+L +DEL GSL 
Sbjct: 138 GRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELHGSLL 197

Query: 184 TYKLKL-GEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFNRALRKIDRRTR 242
            ++ +L G   E++   +      ++G                         R + R   
Sbjct: 198 VHEQRLNGHVQEEQALKVTHEERPSQGRG-----------------------RGVFR--- 231

Query: 243 PNVQDIKSDNSKSYNSQRKVKEEDKSGQNKG-VQCHECEGYGHIRSECATYLK 294
                          S+ + +   +SG N+  V+C++C   GH + EC  + K
Sbjct: 232 --------------GSRGRGRGRGRSGTNRAIVECYKCHNLGHFQYECPEWEK 270


>At2g15650 putative retroelement pol polyprotein
          Length = 1347

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 80/301 (26%), Positives = 148/301 (48%), Gaps = 32/301 (10%)

Query: 11  KTWKAVVKGWKHPVK-AQAEGSTSTPEEKPEDELTSAEEEASLENSKAMNAIFNAVDKNM 69
           K W  V +G   PV+  QAE +  T   K      +  EEA   ++ A+  +  AV   +
Sbjct: 32  KLWSVVEEGV--PVEPVQAEETPETARAK------TLREEAVTNDTMALQILQTAVTDQI 83

Query: 70  FRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERISEYHMRVRDL 129
           F  I   + +K+AW++LK  ++G+ +VR+ +LQ L   +ENL M +++ I  +  ++  L
Sbjct: 84  FSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYDNDNIKTFTDKLIVL 143

Query: 130 SNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIGSLQTYKLKL 189
                  GE  ++ +L++KIL S+ +KF   V  +E+ +D+ +L + EL+G L+  + ++
Sbjct: 144 EIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLDALTMSELLGILKAQEARV 203

Query: 190 GEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFNRALRKIDRRTRPNVQDIK 249
             + E+ TK  AF    ++G ++  + +N +  +                + +      K
Sbjct: 204 TAR-EESTKEGAFYVR-SKGRESGFKQDNTNNRV---------------NQDKKWCGFHK 246

Query: 250 SDNSKSYNSQRKVKEEDKSGQNK--GVQCHECEGYGHIRSECATYLKKQKKGMVVTWSDE 307
           S        + K K +D  G+NK   ++C++C   GH  +EC +   K K+   VT  +E
Sbjct: 247 SSKHTEEECREKPKNDD-HGKNKRSNIKCYKCGKIGHYANECRS---KNKERAHVTLEEE 302

Query: 308 D 308
           D
Sbjct: 303 D 303


>At1g32590 hypothetical protein, 5' partial
          Length = 1263

 Score = 97.4 bits (241), Expect = 9e-21
 Identities = 54/141 (38%), Positives = 81/141 (57%)

Query: 49  EASLENSKAMNAIFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRF 108
           E ++++ K  N +F ++DK + + I     +KD WE +K  ++G  RV+ ++LQ L   F
Sbjct: 20  EKTVKDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSF 79

Query: 109 ENLTMTEDERISEYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQ 168
           E L M   E I+ Y  RV +++N    LGE M D K+V KILR++  KF   V AIEE+ 
Sbjct: 80  EVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESN 139

Query: 169 DISSLKVDELIGSLQTYKLKL 189
           +I  L VD L  SL  ++  L
Sbjct: 140 NIKELTVDGLQSSLMVHEQNL 160


>At2g05390 putative retroelement pol polyprotein
          Length = 1307

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 35/260 (13%)

Query: 53  ENSKAMNAIFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLT 112
           +N  A   +F +V ++    +     +K  WE +KT + G  RV+ ++LQ L   F+ L 
Sbjct: 23  KNDMARALLFQSVPESTILQVGKHKTSKAMWEAIKTRNLGAERVKEAKLQTLMAEFDRLN 82

Query: 113 MTEDERISEYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVI-AIEEAQDIS 171
           M ++E I E+  R+ ++S  S +LGE + + K+V+K L+S+  K  + +I A+E+  D++
Sbjct: 83  MKDNETIDEFVGRISEISTKSESLGEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLN 142

Query: 172 SLKVDELIGSLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFN 231
           +   ++++G ++TY+                     + DD+  E   L  A        N
Sbjct: 143 TTGFEDIVGRMKTYE-----------------DRVCDEDDSPEEQGKLMYA--------N 177

Query: 232 RALRKIDRRTRPNVQDIKSDNSK-SYNSQRKVKEEDKSGQNKGVQCHECEGYGHIRSECA 290
                  R  R   +   S   +  Y  Q++ K +        V C+ C+  GH  SEC 
Sbjct: 178 SESSYDTRGGRGRGRGRSSGRGRGGYGYQQRDKSK--------VICYRCDKTGHYASECL 229

Query: 291 TYLKKQKKGMVVTWSDEDSE 310
             L K  K      ++ED +
Sbjct: 230 DRLLKLIKAQEQQQNNEDDD 249


>At3g25450 hypothetical protein
          Length = 1343

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 57/238 (23%), Positives = 117/238 (48%), Gaps = 25/238 (10%)

Query: 45  SAEEEASLENSKAMNAIFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQML 104
           SA+EE   +N  A   +F ++ +++   +     +   WE +K+ + G  RV+ +RLQ L
Sbjct: 54  SADEE---KNDMARALLFQSIPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQTL 110

Query: 105 TTRFENLTMTEDERISEYHMRVRDLSNASFALGEPMSDEKLVRKILRSV-TSKFAMKVIA 163
              F+ L M + E I +Y  R+ +++  + ALGE + + K+V+K L+S+   K+   V A
Sbjct: 111 MAEFDKLKMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVAA 170

Query: 164 IEEAQDISSLKVDELIGSLQTYKLKL---GEKPEKKTKSIAFVSNTTEGDDADSESENLS 220
           +E+  D+ +   +++ G ++TY+ ++    +  E + K +  V      D  + E E ++
Sbjct: 171 LEQVLDLKTTTFEDIAGRIKTYEDRVWDDDDSHEDQGKLMTEVEEEVVDDLEEEEEEVIN 230

Query: 221 EALALLARKFNRALRKIDRRTRPNVQDIKSDNSKSYNSQRKVKEEDKSGQNKGVQCHE 278
           + +   +   +R L+ I  +                  ++K KEED + + + +  HE
Sbjct: 231 KEIKAKSHVIDRLLKLIRLQ------------------EQKEKEEDDTHEAESLMMHE 270


>At1g36110 hypothetical protein
          Length = 745

 Score = 84.3 bits (207), Expect = 7e-17
 Identities = 60/243 (24%), Positives = 111/243 (44%), Gaps = 33/243 (13%)

Query: 53  ENSKAMNAIFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLT 112
           +N+ A   IF ++ +++   + T   AK  W+ +KT + G  RV+ +RLQ L   FE + 
Sbjct: 56  KNTMARGLIFQSIPESLTLQVGTLATAKLVWDSIKTRYVGADRVKEARLQTLMAEFEKMK 115

Query: 113 MTEDERISEYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIA-IEEAQDIS 171
           M E E+I  +  R+ +L+  S ALG  +   KLV+K L ++  +  + +IA +E+  D++
Sbjct: 116 MKESEKIDVFAGRLAELATRSDALGSNIETSKLVKKFLNALPLRKYIHIIASLEQVLDLN 175

Query: 172 SLKVDELIGSLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSESENLSEALALLARKFN 231
           +   ++++G ++ Y+ ++ +  E++      +   T+  D+   S    +        FN
Sbjct: 176 NTSFEDIVGRIKVYEERVWDGEEQEDDQGKLMYANTDTQDSWYASRGRGQ-----GGGFN 230

Query: 232 RALRKIDRRTRPNVQDIKSDNSKSYNSQRKVKEEDKSGQNKGVQCHECEGYGHIRSECAT 291
              R   R +R        D SK                   V C+ C+  GH  S C  
Sbjct: 231 GRGRGRGRGSR--------DTSK-------------------VTCYRCDKLGHYASNCPD 263

Query: 292 YLK 294
            +K
Sbjct: 264 SVK 266


>At3g31380 hypothetical protein
          Length = 262

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 41/150 (27%), Positives = 84/150 (55%), Gaps = 6/150 (4%)

Query: 73  INTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERISEYHMRVRDLSNA 132
           +     AK+ W+ +KT H G  RV+ +R+Q L   FE + M E E+I ++  R+ +LS  
Sbjct: 18  VGNLQTAKEVWDSIKTRHVGAERVKEARVQTLMADFEKMKMKEAEKIDDFAGRLSELSTK 77

Query: 133 SFALGEPMSDEKLVRKILRSVTSKFAMKVIA-IEEAQDISSLKVDELIGSLQTYKLKLGE 191
           S  LG  +   KLV+K L S+  K  + +IA +E+  D+++   ++++G ++  + ++ +
Sbjct: 78  SAPLGVNIEVPKLVKKFLNSLPRKKYIHIIASLEQVLDLNNTTFEDIVGCMKVNEERVYD 137

Query: 192 KPEKKT----KSIAFVSNTTEGDDADSESE 217
            PE++T      + + S+ ++  + D + +
Sbjct: 138 -PEEETNEDQNKLMYTSSDSKSGNRDYQGD 166


>At3g21040 hypothetical protein
          Length = 534

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 46/177 (25%), Positives = 86/177 (47%), Gaps = 9/177 (5%)

Query: 30  GSTSTPEEKPEDELTSAEEEAS------LENSKAMNAIFNAVDKNMFRLINTCTVAKDAW 83
           G +  P   PE   T   E+ +      +E++KA+  + +A+  ++FR   +   +K+ W
Sbjct: 38  GVSPNPTTDPEVAATIKVEDLTQWRNRMIEDNKALKIMQSALPDSVFRKTISVASSKELW 97

Query: 84  EILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERISEYHMRVRDLSNASFALGEPMSDE 143
           ++LK   +G       +L+ L  + ENLTM E ER+  Y  RV  +    F  G P+SDE
Sbjct: 98  DLLK---KGNDNEEAKKLRRLEKQLENLTMYEGERMKSYLKRVEKIIEEFFVWGNPISDE 154

Query: 144 KLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELIGSLQTYKLKLGEKPEKKTKSI 200
           K++ K+L S+   +   +  ++E   +  L   +L+ + + +       P++  K I
Sbjct: 155 KVIAKLLTSLPRPYDDSITVLKEFMTLPDLTHRDLLKAFEMFGSNPKTMPQELMKFI 211



 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 96  VRMSRLQMLTTRFENLTMTEDERISEYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTS 155
           ++ ++L  L  +FE L M + E +  Y  RV D      A G P+SD+ ++ K+L S++ 
Sbjct: 233 IKDAKLLRLEKQFEKLMMYDGESMDSYLERVLDTIEQFRASGNPLSDDDVIAKLLTSLSW 292

Query: 156 KFAMKVIAIEEAQDISSLKVDELIGSLQTYKLKLGEKPE 194
            +   +  +EE  ++  +   +LIG L+ +    G  PE
Sbjct: 293 PYDDAIPVLEELMNLPDMTPHDLIGVLEMF----GSHPE 327


>At2g05960 putative retroelement pol polyprotein
          Length = 1200

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 40/138 (28%), Positives = 79/138 (56%), Gaps = 8/138 (5%)

Query: 79  AKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERISEYHMRVRDLSNASFALGE 138
           +K  W+ +++ + G  RV+ ++L+ L   F+ L M ++E I E   R+ ++S  S +LGE
Sbjct: 43  SKAVWDKIQSRNLGAERVKEAKLKTLMAEFDKLKMKDNETIDECAGRLSEISTKSTSLGE 102

Query: 139 PMSDEKLVRKILRSV-TSKFAMKVIAIEEAQDISSLKVDELIGSLQTYKLK-------LG 190
            + + K+V+K L+S+ T K+   V A+E+  D+ +    +++G ++TY+ K       L 
Sbjct: 103 DIEETKVVKKFLKSLPTKKYIHIVAALEQVLDLKNTTFKDIVGRIKTYEDKIWVLITCLK 162

Query: 191 EKPEKKTKSIAFVSNTTE 208
           ++ E++ KS+  V    E
Sbjct: 163 KEAEEEEKSVVGVEAEEE 180


>At3g21030 hypothetical protein
          Length = 411

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 47/201 (23%), Positives = 95/201 (46%), Gaps = 13/201 (6%)

Query: 9   DIKTWKAVVKG-------WKHPVKAQAEGSTSTPEEKPEDELTSAEEEASL--ENSKAMN 59
           D + W  +VK        W       +   T+ PE     +     +  +L  +++KA+ 
Sbjct: 14  DYEDWSPMVKTRLVENGVWDVVQNGVSPNPTTNPELAATIKAVDLAQWRNLVVKDNKALK 73

Query: 60  AIFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENLTMTEDERI 119
            + +++  ++FR   +   AK+ W++LK  ++     + ++L+ L  +FENL M E ER+
Sbjct: 74  IMQSSLPDSVFRKTISIASAKELWDLLKKGND----TKEAKLRRLEKQFENLMMYEGERM 129

Query: 120 SEYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDISSLKVDELI 179
             Y  R+  +    F LG P+SD+K++ K+L S+   +   V  ++E   +  L   +L+
Sbjct: 130 KLYLKRLEKIIEELFVLGNPISDDKVIAKLLTSLPRSYDDSVPVLKEFMTLPELTHRDLL 189

Query: 180 GSLQTYKLKLGEKPEKKTKSI 200
            + + +       P++  K I
Sbjct: 190 KAFEMFGSDPKTMPQELMKFI 210


>At3g21050 hypothetical protein
          Length = 420

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 35/143 (24%), Positives = 79/143 (54%), Gaps = 8/143 (5%)

Query: 52  LENSKAMNAIFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTTRFENL 111
           ++++KA+  + +++  ++FR   +   AK+ W++LK  ++     + ++L+ L  +FE L
Sbjct: 66  IKDNKALKIMQSSLPDSVFRKTISIASAKELWDLLKKGND----TKEAKLRRLEKQFEKL 121

Query: 112 TMTEDERISEYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEEAQDIS 171
            M E E +  Y  RV +++     LG P+SD+K++ K+L S++  +   +  ++E   + 
Sbjct: 122 MMYEGEPMDLYLKRVEEITERFEVLGNPISDDKVITKLLTSLSWPYDDSIPVLKEFMTLP 181

Query: 172 SLKVDELIGSLQTYKLKLGEKPE 194
            L + +L+ + + +    G  PE
Sbjct: 182 DLTLRDLLKAFELF----GSHPE 200


>At5g56830 unknown protein
          Length = 242

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 47  EEEASLENSKAMNAIFNAVDKNMFRLINTCTVAKDAWEILKTTHEGTTRVRMSRLQMLTT 106
           E  A +E  + ++ I + +   +F  I   T +K+AWEIL     G    +  +L  L  
Sbjct: 3   ETMARMERCEWLSLIQSGLSTEIFSWIAYATSSKEAWEILMVRSVGGPIFQARKLLDLKK 62

Query: 107 RFENLTMTEDERISEYHMRVRDLSNASFALGEPMSDEKLVRKILRSVTSKFAMKVIAIEE 166
            + N TM++ E + E+  ++ +L     + G  + ++ LV+KIL S+  +F   ++ + E
Sbjct: 63  EYNNTTMSDAETVHEFTGKLLELVFRMKSCGWKVEEKILVKKILSSLPPRFDKVLVEVAE 122

Query: 167 AQDISSLKVDELIGSLQTYKLKLGEKPEKKTKSIAFVSNTTEGDDADSE 215
                 L V+ +I  L  ++  +    E   +S+    N  E  +A++E
Sbjct: 123 -----KLSVNVIIDCLLVHEYNMRPDQESFQESVIQSVNVEESFEAEAE 166


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.310    0.126    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,538,511
Number of Sequences: 26719
Number of extensions: 264891
Number of successful extensions: 1246
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 171
length of query: 310
length of database: 11,318,596
effective HSP length: 99
effective length of query: 211
effective length of database: 8,673,415
effective search space: 1830090565
effective search space used: 1830090565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)