BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0100a.5
         (201 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g65420 unknown protein                                             208  2e-54
At3g56830 putative protein                                            105  1e-23
At5g43050 putative protein                                             42  2e-04
At5g59710 VIP2 protein (VIP2)                                          30  0.86
At4g37260 myb-related protein                                          28  4.3
At1g79050 nuclear-encoded chloroplast DNA repair protein like          28  4.3
At5g57350 plasma membrane ATPase 3 (proton pump) (sp|P20431)           27  9.5

>At1g65420 unknown protein
          Length = 197

 Score =  208 bits (529), Expect = 2e-54
 Identities = 107/155 (69%), Positives = 128/155 (82%), Gaps = 3/155 (1%)

Query: 50  FPQSGFLGRKAVWKIAFALNTGG-VPGN-GEQQSLNDTSSSFGGTRLGRILSAGGRQLLD 107
           +P   F  R+   KIAFAL+TG  +PG+ GE Q +N   +  G TRLGRI  AGG+QLL 
Sbjct: 43  YPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLG 102

Query: 108 KLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLLYRKP- 166
           K+NSARKN PMKIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIEGIGML+Y+KP 
Sbjct: 103 KINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPS 162

Query: 167 PTVRTGRLQSFLLMLNYWKAGICLGLFVDAFKLGS 201
            ++ +G+LQSF++ +N+WKAG+CLGLFVDAFKLGS
Sbjct: 163 SSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197


>At3g56830 putative protein
          Length = 188

 Score =  105 bits (263), Expect = 1e-23
 Identities = 51/116 (43%), Positives = 78/116 (66%), Gaps = 1/116 (0%)

Query: 83  NDTSSSFGGTRLGRILSAGGRQLLDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGD 142
           + +++S  G RL + +     +LL K+   +K++P K+F LL+GFY+A A +T +GQTGD
Sbjct: 73  SSSNNSSRGLRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGD 132

Query: 143 WDVLVAGVVVAAIEGIGMLLYRKPPTVRTGRLQSFLLMLNYWKAGICLGLFVDAFK 198
           WDVL AG+ V  +E IG L+YR    +   +++S + M NYWK G+ LGLF+D+FK
Sbjct: 133 WDVLSAGLAVLVVECIGALMYRASIPL-INKMRSTITMFNYWKTGLALGLFLDSFK 187


>At5g43050 putative protein
          Length = 158

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 123 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLLYRKPPTVRTGRLQSFLLMLN 182
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +            + +LN
Sbjct: 86  LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFP------IALLN 139

Query: 183 YWKAGICLGLFVDAFKLGS 201
            +K G   GLF+DAFKL S
Sbjct: 140 NFKMGFTYGLFIDAFKLAS 158


>At5g59710 VIP2 protein (VIP2)
          Length = 614

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 38  GLTSNAGGKSSHFPQSGFLGRKAVWKIAFALNTGGVPGNGEQQSL--------NDTSSSF 89
           G +SNA G     P  G L   A        N   VPG G  Q L        N   +  
Sbjct: 125 GFSSNANGVGGSIP--GILSTSAGLS-----NRNSVPGMGISQLLGNSGPRITNSMGNMV 177

Query: 90  GGTRLGRILSAGG 102
           GG  LGR +S+GG
Sbjct: 178 GGGNLGRNISSGG 190


>At4g37260 myb-related protein
          Length = 320

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 15/32 (46%), Positives = 18/32 (55%), Gaps = 1/32 (3%)

Query: 71  GGVPGN-GEQQSLNDTSSSFGGTRLGRILSAG 101
           GG  GN GE+Q L  T+S  GG   G  +S G
Sbjct: 127 GGYDGNLGEEQPLKRTASGGGGVSTGLYMSPG 158


>At1g79050 nuclear-encoded chloroplast DNA repair protein like
          Length = 439

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 30/91 (32%), Positives = 42/91 (45%), Gaps = 11/91 (12%)

Query: 18  PYTAFSAS-RVHGCCCEPILSGLTSNAGGKSSHFPQSGFLGRKAVWKIAFALNTGGVPGN 76
           P ++FS S R   C    + S +T  A  K SH   S F  R     I  AL+       
Sbjct: 26  PCSSFSPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDR-----INGALSPDADSRF 80

Query: 77  GEQQ-----SLNDTSSSFGGTRLGRILSAGG 102
            ++Q     ++ND +SSFG   + R+ SAGG
Sbjct: 81  LDRQKALEAAMNDINSSFGKGSVTRLGSAGG 111


>At5g57350 plasma membrane ATPase 3 (proton pump) (sp|P20431)
          Length = 949

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 7/39 (17%)

Query: 121 FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIG 159
           + LL+ F+ A  +AT +   G+W+        A I+GIG
Sbjct: 786 YFLLIAFWVAQLIATAIAVYGNWE-------FARIKGIG 817


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,465,983
Number of Sequences: 26719
Number of extensions: 182001
Number of successful extensions: 397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 7
length of query: 201
length of database: 11,318,596
effective HSP length: 94
effective length of query: 107
effective length of database: 8,807,010
effective search space: 942350070
effective search space used: 942350070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)