BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0098c.1
         (78 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g10740 putative alpha-L-arabinofuranosidase                         91  1e-19
At5g26120 arabinosidase - like protein                                 77  2e-15
At3g48050 putative protein                                             30  0.22
At3g48060 putative protein                                             27  1.8
At1g32500 unknown protein                                              27  1.8
At1g76620 unknown protein                                              26  3.1
At1g63100 transcription factor SCARECROW, putative                     26  3.1
At5g05810 putative protein                                             25  5.3
At4g28180 putative protein                                             25  6.9
At4g11190 putative disease resistance response protein                 25  9.1
At4g00960                                                              25  9.1
At3g43590 putative protein                                             25  9.1

>At3g10740 putative alpha-L-arabinofuranosidase
          Length = 678

 Score = 90.9 bits (224), Expect = 1e-19
 Identities = 45/78 (57%), Positives = 59/78 (74%), Gaps = 1/78 (1%)

Query: 2   VNFGSGSESFRISINGLKSKVKQ-SGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAS 60
           VNFG+ SE+ ++ + GL   V + SGS+KTVLT+ NVMDENSFS+P K+VP ++ +E A 
Sbjct: 579 VNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAE 638

Query: 61  TDMKVELPPHSVTSFDLL 78
            DM V LPPHS +SFDLL
Sbjct: 639 EDMTVVLPPHSFSSFDLL 656


>At5g26120 arabinosidase - like protein
          Length = 674

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 41/78 (52%), Positives = 55/78 (69%), Gaps = 3/78 (3%)

Query: 2   VNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIE-GAS 60
           VNFG  S + ++++ GL +K    GS+K VLT+A+VMDENSFS PN IVPQ++ +E    
Sbjct: 578 VNFGEQSVNLKVAVTGLMAKFY--GSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQ 635

Query: 61  TDMKVELPPHSVTSFDLL 78
            D+   LPPHS +SFDLL
Sbjct: 636 EDLMFVLPPHSFSSFDLL 653


>At3g48050 putative protein
          Length = 1613

 Score = 30.0 bits (66), Expect = 0.22
 Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 5/65 (7%)

Query: 15  INGLKSKVKQ-----SGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKVELPP 69
           +  +K+ VK      S S K V ++      +   + + +  +QTP+EG   D K E PP
Sbjct: 915 LKDIKTDVKSEADCTSDSTKRVASSMLTECRDVSKKVDSVAVEQTPLEGVDDDKKEEKPP 974

Query: 70  HSVTS 74
            +++S
Sbjct: 975 TALSS 979


>At3g48060 putative protein
          Length = 1611

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 47  NKIVPQQTPIEGASTDMKVELPPHSVTS 74
           + +  + TP+EG   D K E PP +++S
Sbjct: 952 DSVAVEHTPLEGVDDDKKEEKPPTALSS 979


>At1g32500 unknown protein
          Length = 475

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (58%)

Query: 15 INGLKSKVKQSGSRKTVLTAANVMDENSFSEP 46
          I  L SK K   +R+T  T+ +V  + SFS+P
Sbjct: 13 IPNLSSKPKLKSNRRTTSTSVSVRAQASFSDP 44


>At1g76620 unknown protein
          Length = 527

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 10  SFRISINGLKSK-----VKQSGSRKTVLTAANVMDENSFSEPNKI 49
           SF  S+  L S+     V  + S   +L +++++D N+F  PNK+
Sbjct: 152 SFNTSLKALSSREGTRVVSGTHSLGELLGSSHIVDHNNFINPNKL 196


>At1g63100 transcription factor SCARECROW, putative
          Length = 658

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 40 ENSFSEPNKIVPQQTPIEGASTDMKVELPPHSVT 73
          +NS +  NK + ++T   G S    ++LPP + T
Sbjct: 66 DNSNNNNNKPIERKTKTSGCSLKQNIKLPPLATT 99


>At5g05810 putative protein
          Length = 407

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 15/56 (26%), Positives = 26/56 (45%), Gaps = 1/56 (1%)

Query: 3   NFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEG 58
           ++ S   SFR S++    KV  +G  K+   A N +D     +   ++P +   EG
Sbjct: 256 SYKSNPMSFRRSLDS-SLKVNDAGEEKSESVAVNCLDRLQRKDGLLLIPNRESFEG 310


>At4g28180 putative protein
          Length = 256

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 22  VKQSGSRKTVLTAANVMDENSFSEPNKIVP 51
           V  S S  T  TAA+++++++ S+P++  P
Sbjct: 91  VSHSYSTATTATAASILEDDALSKPHRPPP 120


>At4g11190 putative disease resistance response protein
          Length = 184

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 34  AANVMDENSFSEPNKIVP 51
           A N+M EN+F EP + +P
Sbjct: 126 ALNIMGENAFMEPTRDLP 143


>At4g00960
          Length = 372

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 11/35 (31%), Positives = 19/35 (53%)

Query: 17  GLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVP 51
           GL    +  GSR T+ +   +++ NSF+ P  + P
Sbjct: 302 GLLCVQENPGSRPTMASIVRMLNANSFTLPRPLQP 336


>At3g43590 putative protein
          Length = 551

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 10/17 (58%), Positives = 14/17 (81%)

Query: 13 ISINGLKSKVKQSGSRK 29
          + +NG+KSKVK+S S K
Sbjct: 76 VMVNGVKSKVKKSESSK 92


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.308    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,589,138
Number of Sequences: 26719
Number of extensions: 50196
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 12
length of query: 78
length of database: 11,318,596
effective HSP length: 54
effective length of query: 24
effective length of database: 9,875,770
effective search space: 237018480
effective search space used: 237018480
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)