BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0096b.4
         (1566 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g11970 hypothetical protein                                       1073  0.0
At1g36590 hypothetical protein                                       1068  0.0
At1g35370 hypothetical protein                                        969  0.0
At2g10780 pseudogene                                                  711  0.0
At2g04670 putative retroelement pol polyprotein                       650  0.0
At2g14650 putative retroelement pol polyprotein                       634  0.0
At2g05610 putative retroelement pol polyprotein                       586  e-167
At4g10580 putative reverse-transcriptase -like protein                493  e-139
At2g06890 putative retroelement integrase                             481  e-135
At3g31970 hypothetical protein                                        473  e-133
At4g07850 putative polyprotein                                        395  e-109
At4g16910 retrotransposon like protein                                387  e-107
At2g07660 putative retroelement pol polyprotein                       381  e-105
At2g14640 putative retroelement pol polyprotein                       319  9e-87
At4g07830 putative reverse transcriptase                              296  8e-80
At4g08100 putative polyprotein                                        295  2e-79
At1g37060 Athila retroelment ORF 1, putative                          292  9e-79
At4g03650 putative reverse transcriptase                              274  3e-73
At1g20390 hypothetical protein                                        219  8e-57
At4g04230 putative transposon protein                                 191  2e-48

>At3g11970 hypothetical protein
          Length = 1499

 Score = 1073 bits (2774), Expect = 0.0
 Identities = 615/1546 (39%), Positives = 893/1546 (56%), Gaps = 91/1546 (5%)

Query: 5    RQNKGASKEMEAKIATLEAELSGVKSTLTTMERNQ----ETLIALLEKSIGKTKVDDDST 60
            ++  G  KE+E ++  L++ ++ +++T+    +        L A+L +S     VD+ ST
Sbjct: 7    QEGDGKGKEVELEVP-LDSRVTRLETTVAEQHKEMMKQFADLYAVLSRSTAGKMVDEQST 65

Query: 61   GDNVTPAKEADHGSGSGKGSMTR------LTGDVLSEFRQSAK--KVELPMFDGDDPAGW 112
             D   P       + SG     R      +  D  + +    +  K++ P FDG     W
Sbjct: 66   LDRSAPRSSQSMENRSGYPDPYRDARHQQVRSDHFNAYNNLTRLGKIDFPRFDGTRLKEW 125

Query: 113  ISRAEVYFRVQDTPPEVRASLAQLCMEG--PTIH--FFNSLLSEEENLTWERFKCALLER 168
            + + E +F V  TP +++  +A +  +    T H  F  S +  E    W+ +   L ER
Sbjct: 126  LFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKER 185

Query: 169  YGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRV 228
            +    D D   +L  L++   + +Y   FE +  ++  L E+  +  +L GL+ + +  V
Sbjct: 186  FEDDCD-DPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHV 243

Query: 229  RSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDWVFV 288
            R        +    L + +  E+       +   +P  ++   NR+  +G        + 
Sbjct: 244  RMFQPQ---TVRHCLFLGKTYEK-------AHPKKPANTTWSTNRSAPTGG-------YN 286

Query: 289  KGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCF 348
            K  KE  S + +     G  G       QP+K            +S  E+ +RR KGLC+
Sbjct: 287  KYQKEGESKTDHY----GNKGNFKPVSQQPKK------------MSQQEMSDRRSKGLCY 330

Query: 349  KCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQ 408
             C   + P H    K+ ++  M+ +EE E        E++ +++    ++S  ++S +  
Sbjct: 331  FCDEKYTPEHYLVHKKTQLFRMDVDEEFEDARE----ELVNDDDEHMPQISVNAVSGIAG 386

Query: 409  VGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQ 468
                  +T+++ G      I ILIDSG+THNF+  +   KLG  V      R+++ DG +
Sbjct: 387  Y-----KTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRK 441

Query: 469  ARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSG 528
             R +GK  +            D  L  L  +DMVLG++WL TLG +   + K  M F   
Sbjct: 442  LRVEGKVTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFN 501

Query: 529  HKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQL-----EKDNKGVTGV------ 577
            ++ V L G        V  Q +         L +++VQL     ++ ++   G       
Sbjct: 502  NQKVLLHGLTSGSVREVKAQKLQK-------LQEDQVQLAMLCVQEVSESTEGELCTINA 554

Query: 578  ------QQAELDMILERHSVVFQAPKGLPPKRNKQ-HAITLKEGEGPVNVRPYRYPHHQK 630
                  +++ ++ +L  +  +F  P  LPP R K  H I L EG  PVN RPYRY  HQK
Sbjct: 555  LTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQK 614

Query: 631  NEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPII 690
            NEI+  V++LL  G ++ S+S ++SPV+LVKKKD +WR+CVDYR LN  T+ D FPIP+I
Sbjct: 615  NEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674

Query: 691  EELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTF 750
            E+L+DEL GA  FSK+DL++GYHQVR+  +D+ KTAF+TH GH+E+LVMPFGL NAP+TF
Sbjct: 675  EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734

Query: 751  QSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGR 810
            Q LMN IF+  LRK VLVFFDDILVYS     H +HL++V  ++R   L A   KC F  
Sbjct: 735  QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794

Query: 811  EKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKP 870
             KVEYLGH IS QG+E DP+K+++V  WP P  +K +RGFLGL GYYR+F+R +G IA P
Sbjct: 795  PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854

Query: 871  LTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQE 930
            L  LTK + FEW+  AQ+AFE LK  L  +PVL+LP F K+F +E DA G G+GA+LMQE
Sbjct: 855  LHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE 914

Query: 931  KRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQK 990
              P+AY S+ L  + L  S YEKEL+A+  A++ WR YLL  HF + TDQRSLK LL+Q+
Sbjct: 915  GHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQR 974

Query: 991  VVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRV--NETLELRQMGSHVDWLGGKDL 1048
            + T  QQ W  KLL FD+EI Y+ GK N  ADALSRV  +E L +       D L  KD+
Sbjct: 975  LNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLL--KDI 1032

Query: 1049 KEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTP 1108
            +   + D +LQ II ++    DS   +++   IL  + ++V+P    + +T+L   H + 
Sbjct: 1033 QAGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSG 1092

Query: 1109 QGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERI 1168
             GGHSG   T++R+    YW+GM   +Q +++ C  CQ+ K   ++  GLLQPLPIP+ I
Sbjct: 1093 VGGHSGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTI 1152

Query: 1169 WEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGV 1228
            W ++SMDFI GLP S G   I+VVVDRLSK AHFI L HPY+A +VA  +   + +LHG 
Sbjct: 1153 WSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGC 1212

Query: 1229 PSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQ 1288
            P+SIVSDRD +F S FWRE F LQG  LK+++AYHP+SDGQ+EVVNRCLETYLRC   D+
Sbjct: 1213 PTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDR 1272

Query: 1289 PKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERD 1348
            P+ W  W+  AEYWYNT +H+S+ +TPFE+VYG+ PP    ++ GE++V  V + L ER+
Sbjct: 1273 PQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQERE 1332

Query: 1349 EALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKY 1408
            + L  L+  L RAQ RMKQFAD+ R++R F IG++V+VKL+ +RQ+SVV R   KL+ KY
Sbjct: 1333 DMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKY 1392

Query: 1409 YGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEGDGGILIEP 1468
            +GPY ++ R G VAY+L LP  S+VHPVFHVS LK  VG       LP +  D    + P
Sbjct: 1393 FGPYKIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFEKV-P 1451

Query: 1469 TEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSF 1514
             +V+  + V  QG+++ ++L++W  +  EEATWE +  ++  FP F
Sbjct: 1452 EKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEF 1497


>At1g36590 hypothetical protein
          Length = 1499

 Score = 1068 bits (2763), Expect = 0.0
 Identities = 613/1546 (39%), Positives = 893/1546 (57%), Gaps = 91/1546 (5%)

Query: 5    RQNKGASKEMEAKIATLEAELSGVKSTLTTMERNQ----ETLIALLEKSIGKTKVDDDST 60
            ++  G  KE+E ++  L++ ++ +++T+    +        L A+L +S     VD+ ST
Sbjct: 7    QEGDGKGKEVELEVP-LDSRVTRLETTVAEQHKEMMKQFADLYAVLSRSTAGKMVDEQST 65

Query: 61   GDNVTPAKEADHGSGSG------KGSMTRLTGDVLSEFRQSAK--KVELPMFDGDDPAGW 112
             D   P       + SG           ++  D  + +    +  K++ P FDG     W
Sbjct: 66   LDRSAPRSSQSMENRSGYLDPYRDARHQQVRSDHFNAYNNLTRLGKIDFPRFDGTRLKEW 125

Query: 113  ISRAEVYFRVQDTPPEVRASLAQLCMEG--PTIH--FFNSLLSEEENLTWERFKCALLER 168
            + + E +F V  TP +++  +A +  +    T H  F  S +  E    W+ +   L ER
Sbjct: 126  LFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKER 185

Query: 169  YGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRV 228
            +    D D   +L  L++   + +Y   FE +  ++  L E+  +  +L GL+ + +  V
Sbjct: 186  FEDDCD-DPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHV 243

Query: 229  RSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDWVFV 288
            R        +    L + +  E+  +        +P  ++   NR+  +G        + 
Sbjct: 244  RMFQPQ---TVRHCLFLGKTYEKAHL-------KKPANTTWSTNRSAPTGG-------YN 286

Query: 289  KGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCF 348
            K  KE  S + +     G  G       QP+K            +S  E+ +RR KGLC+
Sbjct: 287  KYQKEGESKTDHY----GNKGNFKPVSQQPKK------------MSQQEMSDRRSKGLCY 330

Query: 349  KCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQ 408
             C   + P H    K+ ++  M+ +EE E        E++ +++    ++S  ++S +  
Sbjct: 331  FCDEKYTPEHYLVHKKTQLFRMDVDEEFEDARE----ELVNDDDEHMPQISVNAVSGIAG 386

Query: 409  VGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQ 468
                  +T+++ G      I ILIDSG+THNF+  +   KLG  V      R+++ DG +
Sbjct: 387  Y-----KTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRK 441

Query: 469  ARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSG 528
             R +GK  +            D  L  L  +DMVLG++WL TLG +   + K  M F   
Sbjct: 442  LRVEGKVTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFN 501

Query: 529  HKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQL-----EKDNKGVTGV------ 577
            ++ V L G        V  Q +         L +++VQL     ++ ++   G       
Sbjct: 502  NQKVLLHGLTSGSVREVKAQKLQK-------LQEDQVQLAMLCVQEVSESTEGELCTINA 554

Query: 578  ------QQAELDMILERHSVVFQAPKGLPPKRNKQ-HAITLKEGEGPVNVRPYRYPHHQK 630
                  +++ ++ +L  +  +F  P  LPP R K  H I L EG  PVN RPYRY  HQK
Sbjct: 555  LTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQK 614

Query: 631  NEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPII 690
            NEI+  V++LL  G ++ S+S ++SPV+LVKKKD +WR+CVDYR LN  T+ D FPIP+I
Sbjct: 615  NEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674

Query: 691  EELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTF 750
            E+L+DEL GA  FSK+DL++GYHQVR+  +D+ KTAF+TH GH+E+LVMPFGL NAP+TF
Sbjct: 675  EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734

Query: 751  QSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGR 810
            Q LMN IF+  LRK VLVFFDDILVYS     H +HL++V  ++R   L A   KC F  
Sbjct: 735  QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794

Query: 811  EKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKP 870
             KVEYLGH IS QG+E DP+K+++V  WP P  +K +RGFLGL GYYR+F+R +G IA P
Sbjct: 795  PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854

Query: 871  LTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQE 930
            L  LTK + FEW+  AQ+AFE LK  L  +PVL+LP F K+F +E DA G G+GA+LMQE
Sbjct: 855  LHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE 914

Query: 931  KRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQK 990
              P+AY S+ L  + L  S YEKEL+A+  A++ WR YLL  HF + TDQRSLK LL+Q+
Sbjct: 915  GHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQR 974

Query: 991  VVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRV--NETLELRQMGSHVDWLGGKDL 1048
            + T  QQ W  KLL FD+EI Y+ GK N  ADALSRV  +E L +       D L  KD+
Sbjct: 975  LNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLL--KDI 1032

Query: 1049 KEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTP 1108
            +   + D +LQ II ++    DS   +++   IL  + ++V+P    + +T+L   H + 
Sbjct: 1033 QAGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSG 1092

Query: 1109 QGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERI 1168
             GGHSG   T++R+    Y +GM   +Q +++ C  CQ+ K   ++  GLLQPLPIP+ I
Sbjct: 1093 VGGHSGRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTI 1152

Query: 1169 WEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGV 1228
            W ++SMDFI GLP S G   I+VVVDRLSK AHFI L HPY+A +VA+ +   + +LHG 
Sbjct: 1153 WSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGC 1212

Query: 1229 PSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQ 1288
            P+SIVSDRD +F S FWRE F LQG  LK+++AYHP+SDGQ+EVVNRCLETYLRC   D+
Sbjct: 1213 PTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDR 1272

Query: 1289 PKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERD 1348
            P+ W  W+  AEYWYNT +H+S+ +TPFE+VYG+ PP    ++ GE++V  V + L ER+
Sbjct: 1273 PQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQERE 1332

Query: 1349 EALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKY 1408
            + L  L+  L RAQ RMKQFAD+ R++R F IG++V+VKL+ +RQ+SVV R   KL+ KY
Sbjct: 1333 DMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKY 1392

Query: 1409 YGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEGDGGILIEP 1468
            +GPY ++ R G VAY+L LP  S+VHPVFHVS LK  VG       LP +  D    + P
Sbjct: 1393 FGPYKIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFEKV-P 1451

Query: 1469 TEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSF 1514
             +V+  + V  QG+++ ++L++W  +  EEATWE +  ++  FP F
Sbjct: 1452 EKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEF 1497


>At1g35370 hypothetical protein
          Length = 1447

 Score =  969 bits (2504), Expect = 0.0
 Identities = 583/1537 (37%), Positives = 845/1537 (54%), Gaps = 158/1537 (10%)

Query: 8    KGASKEMEAKIATLEAELSG-VKSTLTTMERNQETLIALLEKSIGKTKVDDDSTGDNVTP 66
            KG   E E  IAT   +L   V     +M ++   +++ + ++  K   + +   D   P
Sbjct: 13   KGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMADMMSAMSRTTAKRVTEGEKVLDRSVP 72

Query: 67   AKEADHGSGSGKGSMTRLTGDVLSEFRQSAK---------------KVELPMFDGDDPAG 111
                   + SG     R   D   +FR                   K++ P FDG     
Sbjct: 73   RSSTSSMARSGFVEHQR---DFQRDFRPEMVRQEVNNQYGNLTRLGKIDFPRFDGSRINE 129

Query: 112  WISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENL----TWERFKCALLE 167
            W+ + E +F V  TP E++  +  +  +     + +S +     L     W  +   L +
Sbjct: 130  WLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNWPEYVKLLKD 189

Query: 168  RYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGR 227
            R+    D D   +L +L++   + EY   FE +  ++  L E+  +  +L GL+ + +  
Sbjct: 190  RFEDACD-DPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLVSVYLAGLRTDTQMH 247

Query: 228  VRSMV--TMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDW 285
            VR     T+ D      L++ +  ER          A P ++              SS W
Sbjct: 248  VRMFEPKTVRDC-----LRLGKYYER----------AHPKKTV-------------SSTW 279

Query: 286  VFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKG 345
                  K T SG  Y                +P K      D    HL           G
Sbjct: 280  ----SQKGTRSGGSY----------------RPVKEVEQKSD----HL-----------G 304

Query: 346  LCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQ 405
            LC+ C   F P H    K+ ++  M+ +EE E      AVEV+ +++  +  +  +S++ 
Sbjct: 305  LCYFCDEKFTPEHYLVHKKTQLFRMDVDEEFED-----AVEVLSDDDHEQKPMPQISVNA 359

Query: 406  VEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGD 465
            V  +   K   +K  G +    + ILIDSG+THNF+ +++  KLG  V      ++ + D
Sbjct: 360  VSGISGYKTMGVK--GTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVAD 417

Query: 466  GSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSF 525
            G +    G+ K       +     D  L  L  VDMVLG++WL TLG +   + K  M F
Sbjct: 418  GRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQF 477

Query: 526  WSGHKWVTLQG-----------HEEQEGLLVALQTMISRAGFSGYLGKEKVQLEKDNKGV 574
            +  ++ V L G           H+ Q+       T   +   +    +E V  E+   G 
Sbjct: 478  FYKNQRVWLHGIITGSVRDIKAHKLQK-------TQADQIQLAMVCVREVVSDEEQEIGS 530

Query: 575  TG------VQQAELDMILERHSVVFQAPKGLPPKRNKQ-HAITLKEGEGPVNVRPYRYPH 627
                    V+++ +  I+E    VF  P  LPP R K  H I L EG  PVN RPYRY  
Sbjct: 531  ISALTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVV 590

Query: 628  HQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPI 687
            HQK+EI+  V+++++ G I+ S+S F+SPV+LVKKKD +WR+CVDY  LN  T+ D+F I
Sbjct: 591  HQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLI 650

Query: 688  PIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAP 747
            P+IE+L+DEL G+  FSK+DL++GYHQVR+  +D+ KTAF+TH GH+E+LVM FGL NAP
Sbjct: 651  PLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAP 710

Query: 748  STFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCL 807
            +TFQSLMN +FR  LRK VLVFFDDIL+YS     H EHL+ V  ++R   L A   K  
Sbjct: 711  ATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK-- 768

Query: 808  FGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKI 867
                  E+LGH IS + +E DP+K+++V  WPTP  VK VRGFLG  GYYR+F+R++G I
Sbjct: 769  ------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVI 822

Query: 868  AKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAIL 927
            A PL  LTK +GF WS +AQ AF+TLK  L  +PVLALP F K+F +E DA G G+ A+L
Sbjct: 823  AGPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVL 882

Query: 928  MQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELL 987
            MQ+  P+AY S+ L  + L  S YEKEL+A   A++ WR YLL  HF + TDQRSLK LL
Sbjct: 883  MQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLL 942

Query: 988  QQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKD 1047
            +Q++ T  QQ W  KLL FD+EI Y+ GK N  ADALSRV  +  L    S V+    K+
Sbjct: 943  EQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKE 1002

Query: 1048 LKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTT 1107
            ++     D  L+ II ++ +  D+   Y++   IL  + ++V+P +  + + +L   H +
Sbjct: 1003 IQVAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCS 1062

Query: 1108 PQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPER 1167
              GG SG   +++R+ +  YW+GM   +Q F++ C  CQ+ K   ++  GLLQPLPIP++
Sbjct: 1063 GMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDK 1122

Query: 1168 IWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHG 1227
            IW D+SMDFI GLP S G   I+VVVDRLSK AHF+ L HPY+A +VA+ F   + + HG
Sbjct: 1123 IWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHG 1182

Query: 1228 VPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIAD 1287
             P+SIVSDRD +F S+FW+E FKLQG +L+MS+AYHP+SDGQ+EVVNRCLE YLRC    
Sbjct: 1183 CPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHA 1242

Query: 1288 QPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLER 1347
            +P  W  W+P AEYWYNT +H+S+ +TPFE+VYG+ PP    ++ G+++V  V + L ER
Sbjct: 1243 RPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQER 1302

Query: 1348 DEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAK 1407
            +  L  L+  L RAQ RMKQFAD+ R++R+F IG++V+VKL+ +RQ+SVV R+  KL+ K
Sbjct: 1303 ENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPK 1362

Query: 1408 YYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEGDGGILIE 1467
            Y+GPY ++ + G V                        VG      +LP +  D   + E
Sbjct: 1363 YFGPYKIIEKCGEV-----------------------MVGNVTTSTQLPSVLPD---IFE 1396

Query: 1468 --PTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWE 1502
              P  +L  + V+ QG++   +L++W G+  EEATW+
Sbjct: 1397 KAPEYILERKLVKRQGRAATMVLVKWIGEPVEEATWK 1433


>At2g10780 pseudogene
          Length = 1611

 Score =  711 bits (1835), Expect = 0.0
 Identities = 500/1524 (32%), Positives = 740/1524 (47%), Gaps = 147/1524 (9%)

Query: 56   DDDSTGDNVTPAKEADHGSGSGKGSMTRLTGDVLSEFRQSAKKVELPMFDGDDPA---GW 112
            DDDS    V P  + +HG         R  GD LS     ++          DP     W
Sbjct: 146  DDDSEVVEVNP--QPNHG---------RKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEW 194

Query: 113  ISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSL-------------LSEEENL--- 156
             SR +  F+    P + +  +A   +EG   +++ ++               +E N    
Sbjct: 195  RSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRSFADFEDEFNKKYF 254

Query: 157  ---TWERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPR-LPEKQF 212
                W+R +CA L+   G                 TV EY   F  L   + R L E+Q 
Sbjct: 255  PPEAWDRLECAYLDLVQGNR---------------TVREYDEEFNRLRRYVGRELEEEQA 299

Query: 213  -LGYFLHGLKGEIRGR--VRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSL 269
             L  F+ GL+ EIR    VR+  ++++L           VER  M + G    R      
Sbjct: 300  QLRRFIRGLRIEIRNHCLVRTFNSVSEL-----------VERAAMIEEGIEEERYLNREK 348

Query: 270  GGNRANRSGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRG 329
               R N+S         F K     +          G N      +A     R   +D  
Sbjct: 349  APIRNNQSTKPADKKRKFDKVDNTKSDAKTGECVTCGKNHSGTCWKAIGACGRCGSKDHA 408

Query: 330  FTHLSYNELMERRQKG----LCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAV 385
                   E  + +  G     CF CG   H   +CP  +L       + +  GG  L   
Sbjct: 409  IQSCPKMEPGQSKVLGEETRTCFYCGKTGHLKRECP--KLTAEKQAGQRDNRGGNGLPPP 466

Query: 386  EVIEEEESSEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSL 445
               +   S   ELS        +   D      + G  +  P                  
Sbjct: 467  PKRQAVASRVYELS--------EEANDAGNFRAITGGFRKEP------------------ 500

Query: 446  VHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGI 505
                     +T    +    G      G  + + ++     +  D  +  L   D++LG+
Sbjct: 501  ---------NTDYGMVRAAGGQAMYPTGLVRGISVVVNGVNMPADLIIVPLKKHDVILGM 551

Query: 506  EWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGK--E 563
            +WL      I +  +  + F      +  QG     G LV     IS       LGK  E
Sbjct: 552  DWLGKYKAHI-DCHRGRIQFERDEGMLKFQGIRTTSGSLV-----ISAIQAERMLGKGCE 605

Query: 564  KVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPY 623
                    K V    + +   I+   S VF A  G+PP R+    I L+ G  P++  PY
Sbjct: 606  AYLATITTKEVGASAELKDIPIVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPY 665

Query: 624  RYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPD 683
            R    +  +++ Q++ELL+ G IR S+S + +PV+ VKKKD S+R+C+DYR LNK T+ +
Sbjct: 666  RMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 725

Query: 684  KFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGL 743
            K+P+P I+EL+D+L GA++FSK+DL SGYHQ+ ++  DV KTAFRT   H+EF+VMPFGL
Sbjct: 726  KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGL 785

Query: 744  MNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANR 803
             NAP+ F  +MN +FR  L + V++F +DILVYSK W +H EHL+ VL  LRE  L A  
Sbjct: 786  TNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKL 845

Query: 804  KKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRD 863
             KC F +  V +LGH+IS QGV VDP K+ S+  WP P+N   +R FLGL GYYR+F+  
Sbjct: 846  SKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 905

Query: 864  YGKIAKPLTELT-KKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVG 922
            +  +A+PLT LT K   F WS++ +++F  LK  LT +PVL LP+  + +T+  DAS VG
Sbjct: 906  FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVG 965

Query: 923  VGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRS 982
            +G +LMQ+   IAY S+ L     +   ++ E+ A+   ++ WR YL G   ++ TD +S
Sbjct: 966  LGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKS 1025

Query: 983  LKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLE--------LR 1034
            LK +  Q  + + Q+ W   +  ++ +I+Y PGK N+ ADALSR    +E        + 
Sbjct: 1026 LKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALSRRRSEVEAERSQVDLVN 1085

Query: 1035 QMGS-HVDWLGG--KDLKEEVSKDEELQRIIKSVHEKKDSSLGY---------TYENGIL 1082
             MG+ HV+ L    + L    +   +L   I+   E+ +   G+         T  NG +
Sbjct: 1086 MMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERDEEIKGWAQNNKTEYQTSNNGTI 1145

Query: 1083 LYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQC 1142
            +  GR+ +P +  L   +L E H +    H G  + YR L    +W GMK  V  +V +C
Sbjct: 1146 VVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKC 1205

Query: 1143 DVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLP---KSKGFEAILVVVDRLSKY 1199
              CQ  K     P GLLQ LPIPE  W+ ++MDF+TGLP   KSK   A+ VVVDRL+K 
Sbjct: 1206 PTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSK-HNAVWVVVDRLTKS 1264

Query: 1200 AHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMS 1259
            AHF+ +     A+ +AE +  EIVRLHG+P SIVSDRD  F S FW+   K  GT++ +S
Sbjct: 1265 AHFMAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLS 1324

Query: 1260 TAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVV 1319
            TAYHP++D QSE   + LE  LR  + D    W  ++   E+ YN  F AS G++P+E +
Sbjct: 1325 TAYHPQTDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEAL 1384

Query: 1320 YGRPPPTITRWIQ-GETRV--EAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDR 1376
            YGR   T   W   GE R+    +  E  ER   ++ L+++L  AQDR K +A+++R + 
Sbjct: 1385 YGRACRTPLCWTPVGERRLFGPTIVDETTER---MKFLKIKLKEAQDRQKSYANKRRKEL 1441

Query: 1377 SFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPG-SKVHP 1435
             F +G+ V++K   ++     T    KL+ +Y GPY V+ RVGAVAY+L LPP  +  H 
Sbjct: 1442 EFQVGDLVYLKAMTYKGAGRFTS-RKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHN 1500

Query: 1436 VFHVSLLKKAVGTYHEGEE--LPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKG 1493
            VFHVS L+K +    E  E   P L+ +  +   P  ++   T   +G++   + + W  
Sbjct: 1501 VFHVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNC 1560

Query: 1494 QQPEEATWEDVDMIKSQFPSFCLE 1517
            +  EE TWE  + +K+ FP +  E
Sbjct: 1561 RGREEYTWETENKMKANFPEWFKE 1584


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  650 bits (1677), Expect = 0.0
 Identities = 402/1103 (36%), Positives = 597/1103 (53%), Gaps = 91/1103 (8%)

Query: 449  LGKTVVDTPS---LRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGI 505
            L  TV D      L + +  G      G+ K + I      +  D  +  +   D++LG+
Sbjct: 350  LDHTVADCTERGHLHVKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGM 409

Query: 506  EWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLV--ALQT--MISRAGFSGYLG 561
            +WL     + ++  +  +SF      +  QG     G LV  A+Q   MI + G   YL 
Sbjct: 410  DWLDHYR-VHLDCHRGRVSFERPEGRLVYQGVRPTSGSLVISAVQAKKMIEK-GCEAYLV 467

Query: 562  KEKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVR 621
               +        V+ ++      +++    VFQ+ +GLPP R+    I L+ G  P++  
Sbjct: 468  TISMPESLGQVAVSDIR------VIQEFEDVFQSLQGLPPSRSDPFTIELEPGTAPLSKA 521

Query: 622  PYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATI 681
            PYR    +  E++ Q+++LL  G IR STS + +PV+ VKKKD S+R+C+DYR LN  T+
Sbjct: 522  PYRMAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTV 581

Query: 682  PDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPF 741
             +K+P+P I+ELLD+L GA  FSK+DL SGYHQ+ + E DV KTAFRT  GH+EF+VMPF
Sbjct: 582  KNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPF 641

Query: 742  GLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVA 801
             L NAP+ F  LMN +F+  L + V++F DDILVYSK    H  HL+ V+  LREQ L A
Sbjct: 642  ALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFA 701

Query: 802  NRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFI 861
               KC F + ++ +LGH++S +GV VDP K+E++  WP P N   +R FL LTGYYR+F+
Sbjct: 702  KLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFV 761

Query: 862  RDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASG 920
            + +  +A+P+T+LT K+  F WS + +E F +LK+ LT++PVLALP+  + + +  DAS 
Sbjct: 762  KGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASR 821

Query: 921  VGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQ 980
            VG+G +LMQ  + IAY S+ L     +   ++ E+  +  A++ WR YL G   +V TD 
Sbjct: 822  VGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDH 881

Query: 981  RSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSR-------------- 1026
            +SLK +  Q  + + Q  W   +  +D EI+Y PGK N  ADALSR              
Sbjct: 882  KSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKANVVADALSRKRVGAAPGQSVEAL 941

Query: 1027 VNETLELRQMGSHVDWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSL-------GYTYE- 1078
            V+E   LR      + LG     E V + + L R    + ++KD  L       G  Y+ 
Sbjct: 942  VSEIGALRLCVVAREPLG----LEAVDRADLLTR--ARLAQEKDEGLIAASKAEGSEYQF 995

Query: 1079 --NGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQ 1136
              NG +   GR+ +P++  L   +L+E H +    H G  + YR L     W GMK  V 
Sbjct: 996  AANGTIFVYGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVA 1055

Query: 1137 DFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRL 1196
            ++V +CDVCQ  K              +P+ IW                     V++DRL
Sbjct: 1056 NWVAECDVCQLVK----------AEHQVPDAIW---------------------VIMDRL 1084

Query: 1197 SKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKL 1256
            +K AHF+ ++    A  +A+ +  EIV+LHGVP SIVSDRD  F   FWR      GTK+
Sbjct: 1085 TKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKV 1144

Query: 1257 KMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPF 1316
            +MSTAYHP++DGQSE   + LE  LR  + D    W   +   E+ YN  + AS G+ PF
Sbjct: 1145 QMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPF 1204

Query: 1317 EVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDR 1376
            E +YGRP  T  RW Q E R       + E  E +R L+L +  AQ R + +AD++R + 
Sbjct: 1205 EALYGRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYADKRRREL 1264

Query: 1377 SFSIGEWVFVKLRAHR--QKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKV- 1433
             F +G+ V++K+   R   +S+   +  KL+ +Y GP+ +V RVG VAY+L+LP   +  
Sbjct: 1265 EFEVGDRVYLKMAMLRGPNRSI---LETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAF 1321

Query: 1434 HPVFHVSLLKKAVGTYHEGEEL-----PDLEGDGGILIEPTEVLATRTVQLQGQSIKQIL 1488
            H VFHV +L+K +   H+ +E+      DL+ +  +   P  VL  R  +L+ + I  I 
Sbjct: 1322 HKVFHVLMLRKCL---HKDDEVLVKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIK 1378

Query: 1489 IQWKGQQPEEATWEDVDMIKSQF 1511
            + W      E TWE    +K++F
Sbjct: 1379 VLWDCDGVTEETWEPEARMKARF 1401



 Score = 37.0 bits (84), Expect = 0.090
 Identities = 43/187 (22%), Positives = 77/187 (40%), Gaps = 9/187 (4%)

Query: 107 DDPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLS--EEENLTWERFKCA 164
           ++   W SR +  F     P E R  LA   +EG    ++ S+ +   + +++W  F   
Sbjct: 145 EEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQADMSWADFVAE 204

Query: 165 LLERYGGQGDGDVYE-QLTELRQ-RGTVEEYITAFEYLTAQIPRLPE--KQFLGYFLHGL 220
              +Y  Q   D  E +  EL Q   +V EY   F  L A   R  E  +  +  FL GL
Sbjct: 205 FNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNRLLAYAGRGMEDDQAQMRRFLRGL 264

Query: 221 KGEIR--GRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRSG 278
           + ++R   RV    T A L      ++   ++R+ +G   +   + T+  +  ++  +  
Sbjct: 265 RPDLRVQCRVSQYATKAALVE-TAAEVEEDLQRQVVGVSPAVQTKNTQQQVTPSKGGKPA 323

Query: 279 SNRSSDW 285
             +   W
Sbjct: 324 QGQKRKW 330


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  634 bits (1636), Expect = 0.0
 Identities = 403/1110 (36%), Positives = 592/1110 (53%), Gaps = 115/1110 (10%)

Query: 422  LIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLR---ITLGDGSQARTKGKCKEL 478
            L+ G+   +L DSGA+H F++     +    +   P  +   + +  G      G+ K +
Sbjct: 307  LVGGVEAHVLFDSGASHCFITPESASR--GNIRGDPGEQLGAVKVAGGQFVAVLGRTKGV 364

Query: 479  MIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGH- 537
             I      +  D  +  +   D++LG++WL                    H  V L  H 
Sbjct: 365  DIQIAGESMPADLIISPVELYDVILGMDWL-------------------DHYRVHLDCHR 405

Query: 538  -----EEQEGLLVALQTMISRAGFSGYLGKEKVQLEKD-NKGVTGVQQAELDMILERHSV 591
                 E  EG LV      +    SG L    VQ EK   KG     + E          
Sbjct: 406  GRVSFERPEGSLVYQGVRPT----SGSLVISAVQAEKMIEKGCEAYLEFE---------D 452

Query: 592  VFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTS 651
            VFQ+ +GLPP R+    I L+ G  P++  PYR    +  E++ Q+++LL          
Sbjct: 453  VFQSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLL---------- 502

Query: 652  SFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSG 711
               +PV+ VKKKD S+R+C+DYR LN  T+ +K+P+P I+ELLD+L GA  FSK+DL SG
Sbjct: 503  --GAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSG 560

Query: 712  YHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFD 771
            YH + + E DV KTAFRT  GH+EF+VMPFGL NAP+ F  LMN +F+ +L + V++F D
Sbjct: 561  YHLIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFID 620

Query: 772  DILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSK 831
            DILVYSK    H  HL+ V+  LREQ L A   KC F + ++ +LGH++S +GV VDP K
Sbjct: 621  DILVYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEK 680

Query: 832  VESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAF 890
            +E++  W TP N   +R FLGL GYYR+F++ +  +A+P+T+LT K+  F WS + +E F
Sbjct: 681  IEAIRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGF 740

Query: 891  ETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSA 950
             +LK+ LT++PVLALP+  + + +  DASGVG+G +LMQ  + IAY S+ L     +   
Sbjct: 741  VSLKEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPT 800

Query: 951  YEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEI 1010
            ++ E+ A+  A++ WR YL G + +V TD +SLK +  Q  + + Q+ W   +  +D EI
Sbjct: 801  HDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEI 860

Query: 1011 SYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEEVSKDEELQRIIKSVHEKKD 1070
            +Y PGK N  ADALS              V    G+ ++  VS+   L R+     E   
Sbjct: 861  AYHPGKANVVADALSH-----------KRVGAAPGQSVEALVSEIGAL-RLCAVARE--- 905

Query: 1071 SSLGY-TYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWR 1129
              LG    +   LL   RL   ++  LI     E                          
Sbjct: 906  -PLGLEAVDRADLLTRVRLAQEKDEGLIAAYKAE-------------------------- 938

Query: 1130 GMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAI 1189
                 V ++V +CDVCQ  K     PGG+LQ LPIPE  W+ +++DF+ GLP S+  +AI
Sbjct: 939  -GSEDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTKDAI 997

Query: 1190 LVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELF 1249
             V+VDRL+K AHF+ ++    A  +A+ +  EIV+LHGVP SIVSDRD  F S FWR   
Sbjct: 998  WVIVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQ 1057

Query: 1250 KLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHA 1309
               GTK++MSTAYHP++ GQSE   + LE  LR  + D    W   +   E+ YN  + A
Sbjct: 1058 AEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPA 1117

Query: 1310 STGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFA 1369
            S G+ PFE +Y RP  T     Q   R       + E  E +R L+L +  AQDR + +A
Sbjct: 1118 SIGMAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYA 1177

Query: 1370 DRKRSDRSFSIGEWVFVKLRAHR--QKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKL 1427
            D++R +  F +G+ V++K+   R   +S+      KL+ +Y GP+ +V RVG VAY+L+L
Sbjct: 1178 DKRRRELEFEVGDRVYLKMAMLRGPNRSISE---TKLSPRYMGPFRIVERVGPVAYRLEL 1234

Query: 1428 PPGSKV-HPVFHVSLLKKAVGTYHEGEEL-----PDLEGDGGILIEPTEVLATRTVQLQG 1481
            P   +  H VFHVS+L+K +   H+ +E+      DL+ +  +   P  VL  R  +L+ 
Sbjct: 1235 PDVMRAFHKVFHVSMLRKCL---HKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRR 1291

Query: 1482 QSIKQILIQWKGQQPEEATWEDVDMIKSQF 1511
            + I  I + W      + TWE    +K++F
Sbjct: 1292 KKIPLIKVLWDCDGVTKETWEPEARMKARF 1321


>At2g05610 putative retroelement pol polyprotein
          Length = 780

 Score =  586 bits (1510), Expect = e-167
 Identities = 305/667 (45%), Positives = 412/667 (61%), Gaps = 52/667 (7%)

Query: 578  QQAELDMILERHSVVFQAPKGLPPKRNKQ-HAITLKEGEGPVNVRPYRYPHHQKNEIENQ 636
            +++ ++ ++     +F  P  LPP R    H I L E   PVN RPYRY  HQKNEI+  
Sbjct: 3    EESFVEKVVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKI 62

Query: 637  VKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDE 696
            V ++L  G I+ S+S ++SPV+LVKKKD +WR+CVDYR LN  T+ D+FPIP+IE+L+DE
Sbjct: 63   VDDMLASGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDE 122

Query: 697  LHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMND 756
            L G+  +SK+DL++GYHQVR+   D+HKTAF+TH GHYE+LVMPFGL NAP++FQSLMN 
Sbjct: 123  LGGSNVYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNS 182

Query: 757  IFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYL 816
             F+  LRK VLVFFDDIL+YS     H +HL+ V  ++R   L A   KC F   +VEYL
Sbjct: 183  FFKPFLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYL 242

Query: 817  GHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTK 876
            GH ISG+G+  DP+K+++V  WP P N+K + GFLGLTGYYR+F                
Sbjct: 243  GHFISGEGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF---------------- 286

Query: 877  KNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAY 936
                                               F +E DA G G+GA+LMQE  P+A+
Sbjct: 287  -----------------------------------FVVEMDACGHGIGAVLMQEGHPLAF 311

Query: 937  FSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQ 996
             S+ L  + L  S YEKEL+A+   ++ WR YL+  HF + TDQRSLK LL+Q++ T  Q
Sbjct: 312  ISRQLKGKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRLNTPIQ 371

Query: 997  QNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEEVSKDE 1056
            Q W  KLL FD+EI YK GK N  ADALSRV  +  L    S V+    K+++     D 
Sbjct: 372  QQWLPKLLEFDYEIQYKQGKENLVADALSRVEGSEVLHMALSVVECDLLKEIQAGYVTDG 431

Query: 1057 ELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFY 1116
            ++Q II  + ++ DS   YT+  G+L  + ++V+P  S +  T+L   H +  GGHSG  
Sbjct: 432  DIQGIITILQQQADSKKHYTWSQGVLRRKNKIVVPNNSGIKDTILRWLHCSGMGGHSGKE 491

Query: 1117 RTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDF 1176
             T++R+    YW+ M   +Q F++ C  CQ+ K   ++  GLLQPLPIP+RIW D+SMDF
Sbjct: 492  VTHQRVKGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDRIWSDVSMDF 551

Query: 1177 ITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDR 1236
            I GLP S G   I+VVVDRLSK AHFI L HPY+A +VA+ +   + +LHG PSSIV   
Sbjct: 552  IDGLPLSNGKTVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLHGCPSSIVVSS 611

Query: 1237 DPIFVSN 1243
              + V +
Sbjct: 612  RRVLVQH 618



 Score =  144 bits (363), Expect = 4e-34
 Identities = 69/136 (50%), Positives = 97/136 (70%)

Query: 1313 VTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRK 1372
            +TP+E VYG+PPP    ++ GE++V  V + + ER+  +  L+  L RAQ RMKQ AD+ 
Sbjct: 625  MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684

Query: 1373 RSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSK 1432
             ++R F +G++VFVKL+ +RQ+SVV R   KL+ KY+GPY V+ R G VAY+L+LP  S+
Sbjct: 685  ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPANSQ 744

Query: 1433 VHPVFHVSLLKKAVGT 1448
            VHPVFHVS L+  VGT
Sbjct: 745  VHPVFHVSQLRVLVGT 760


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  493 bits (1270), Expect = e-139
 Identities = 294/784 (37%), Positives = 443/784 (56%), Gaps = 49/784 (6%)

Query: 473  GKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWV 532
            G+ K + I      +  D  +  +   D++LG++WL     + ++W +  + F      +
Sbjct: 351  GRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDYYR-VHLDWHRGRVFFERPEGRL 409

Query: 533  TLQGHEEQEGLLVA----LQTMISRAGFSGYLGKEKVQLEKDNKGVTGVQQAELDMILER 588
              QG     G LV      + MI + G   YL    +        V+ ++      +++ 
Sbjct: 410  VYQGVRPISGSLVISAVQAEKMIEK-GCEAYLVTISMPESVGQVAVSDIR------VVQE 462

Query: 589  HSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRH 648
               VFQ+ +GLPP ++    I L+ G  P++  PYR    +  E++ Q+K+LL  G IR 
Sbjct: 463  FQDVFQSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRP 522

Query: 649  STSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDL 708
            STS + +PV+ VKKKD S+R+C+DYR LN+ T+ +++P+P I+ELLD+L GA  FSK+DL
Sbjct: 523  STSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDL 582

Query: 709  KSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLV 768
             SGYHQ+ + E DV KTAFRT  GH+EF+VMPFGL NAP+ F  LMN +F+  L + V++
Sbjct: 583  TSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVII 642

Query: 769  FFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVD 828
            F DDILVYSK       HL+ V+  LREQ L A   KC F + ++ +LGH++S +GV VD
Sbjct: 643  FIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVD 702

Query: 829  PSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQ 887
            P K+E++  WP P N   +R FLG  GYYR+F++ +  +A+P+T+LT K+  F WS++ +
Sbjct: 703  PEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECE 762

Query: 888  EAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLS 947
            E F +LK+ LT++PVLALP+  + + +  DAS VG+G +LMQ  + IAY S+ L     +
Sbjct: 763  EGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGN 822

Query: 948  KSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFD 1007
               ++ E+ A+  A++ WR YL G   +V TD +SLK +  Q  + + Q+ W   +  +D
Sbjct: 823  YPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYD 882

Query: 1008 FEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEEVSKDEELQRIIKSVHE 1067
             EI+Y PGK N   DALSR       +++G+ +    G+ ++  VS+   L R+     E
Sbjct: 883  LEIAYHPGKANVVVDALSR-------KRVGAAL----GQSVEVLVSEIGAL-RLCAVARE 930

Query: 1068 KKDSSLGY-TYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANV 1126
                 LG    +   LL   RL   ++  L  T                 + YR L    
Sbjct: 931  ----PLGLEAVDRADLLTRVRLAQKKDEGLRAT-----------------KMYRDLKRYY 969

Query: 1127 YWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGF 1186
             W GMK  V ++V +CDVCQ  K      GG+LQ LPIPE  W+ ++MD + GL  S+  
Sbjct: 970  QWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLRVSRTK 1029

Query: 1187 EAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSI--VSDRDPIFVSNF 1244
            +AI V+VDRL+K AHF+ ++    A  +A+ F  EIV+LHGVP ++    DR   +    
Sbjct: 1030 DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQDRQRSYADKR 1089

Query: 1245 WREL 1248
             REL
Sbjct: 1090 RREL 1093



 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 14/178 (7%)

Query: 1342 KELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHR--QKSVVTR 1399
            K+ +     L  + L +  AQDR + +AD++R +  F +G+ V++K+   R   +S+   
Sbjct: 1059 KKFVSEIVKLHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISE- 1117

Query: 1400 IYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKV-HPVFHVSLLKKAVGTYHEGEEL--- 1455
               KL+ +Y GP+ +V RV  VAY+L+LP   +  H VFHVS+L+K +   H+ +E    
Sbjct: 1118 --TKLSPRYMGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLRKCL---HKDDEALAK 1172

Query: 1456 --PDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQF 1511
               DL+ +  +   P  VL  R  +L+ + I  I + W      E TWE    +K++F
Sbjct: 1173 IPEDLQPNMTLEARPVRVLERRIKELRQKKIPLIKVLWDCDGVTEETWEPEARMKARF 1230


>At2g06890 putative retroelement integrase
          Length = 1215

 Score =  481 bits (1239), Expect = e-135
 Identities = 323/930 (34%), Positives = 480/930 (50%), Gaps = 86/930 (9%)

Query: 308  NGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCFKCGGAFHPMHQCPDKQLRV 367
            N P    +A+ +   +    +G   +S + + + R    C+KC G  H  ++CP+K++ +
Sbjct: 124  NKPIVSPRAESKPYAAVQDHKGKAEISTSRVRDVR----CYKCQGKGHYANECPNKRVMI 179

Query: 368  LI----MEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQVGKDKPQTIKLLGL- 422
            L+    +E EEE     + L      EE  ++GEL     +   Q   D+ +  K L   
Sbjct: 180  LLDNGEIEPEEEIPDSPSSLKEN---EELPAQGELLVARRTLSVQTKTDEQEQRKNLFHT 236

Query: 423  ---IQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQARTKGKCKELM 479
               + G    ++ID G+  N  S ++V KLG            L D  + R K +    +
Sbjct: 237  RCHVHGKVCSLIIDGGSCTNVASETMVKKLGLK---------WLNDSGKMRVKNQVVVPI 287

Query: 480  IIAG--NHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTL--- 534
            +I    +  LC D    E G++  +LG  W      M   +  +    + G K + +   
Sbjct: 288  VIGKYEDEILC-DVLPMEAGHI--LLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMT 344

Query: 535  --QGHEEQEGLLVALQTMISRAGF--------SGYLGKEKVQLEKDNKGVTG------VQ 578
              + +++Q  L    + ++ +  F        S Y  K+ + L    + +T       V 
Sbjct: 345  PHEVYQDQIHLKQKKEQVVKQPNFFAKSGEVKSAYSSKQPMLLFVFKEALTSLTNFAPVL 404

Query: 579  QAELDMILERHSVVFQA--PKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQ 636
             +E+  +L+ +  VF    PKGLPP R  +H I    G    N   YR    +  E++ Q
Sbjct: 405  PSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELQRQ 464

Query: 637  VKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDE 696
                                      KD SWRMC D RA+N  T+    PIP ++++LDE
Sbjct: 465  --------------------------KDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDE 498

Query: 697  LHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMND 756
            LHG+  FSK+DLKSGYHQ+R+ E D  KTAF+T  G YE+LVMPFGL +APSTF  LMN 
Sbjct: 499  LHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNH 558

Query: 757  IFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYL 816
            + R  +   V+V+FDDILVYS+    H+EHL  VL +LR++ L AN KKC F  + + +L
Sbjct: 559  VLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFL 618

Query: 817  GHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTK 876
            G ++S  GV+VD  KV+++  WP+PK V  VR F GL G+YR+F +D+  I  PLTE+ K
Sbjct: 619  GFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMK 678

Query: 877  KN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIA 935
            K+ GF+W +  +EAF++LK KLT +PVL L +F K F IECDASG+G+GA+LMQ+++ IA
Sbjct: 679  KDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIA 738

Query: 936  YFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTME 995
            +FS+ LG   L+   Y+KEL AL  A+Q W+ YL  + F + TD  SLK L  Q+ +   
Sbjct: 739  FFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKR 798

Query: 996  QQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEEVSKD 1055
               W   +  F + I YK GK N  ADALS+    L       +V  +G + +KE    D
Sbjct: 799  HARWVEFIETFAYVIKYKKGKDNVVADALSQRYTLLST----LNVKLMGFEQIKEVYETD 854

Query: 1056 EELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGF 1115
             + Q + K+   +K +S  Y  ++  L YE RL +P  S L    + E H     GH G 
Sbjct: 855  HDFQEVYKAC--EKFASGRYFRQDKFLFYENRLCVPNCS-LRDLFVREAHGGGLMGHFGI 911

Query: 1116 YRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMD 1175
             +T   +  +  W  MK  V+    +C+ C++ K     P GL  PLPIP+  W D+SMD
Sbjct: 912  AKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQAK-SKIQPNGLYTPLPIPKHPWNDISMD 970

Query: 1176 FITGLPKSKGFEAILVVVDRLSKYAHFIPL 1205
            F+ GLP++ G ++I VV         F P+
Sbjct: 971  FVMGLPRT-GKDSIFVVYSPFQIVYGFNPI 999



 Score = 38.5 bits (88), Expect = 0.031
 Identities = 42/171 (24%), Positives = 83/171 (47%), Gaps = 16/171 (9%)

Query: 1314 TPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLAR-AQDRMKQFA--- 1369
            +PF++VYG  P +    I      E V  +  ++ E ++Q+     R  +++ K +A   
Sbjct: 988  SPFQIVYGFNPISPFDLIPLPLS-ERVSIDGKKKAELVQQIHENARRNIEEKTKLYAKQA 1046

Query: 1370 DRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKL-- 1427
            ++ R ++ F +G+ V++ LR  R  +   +  +KL  +  GP+ ++ R+   AYQL L  
Sbjct: 1047 NKGRREQIFEVGDMVWIHLRKERFPA---QRKSKLMPRIDGPFKIIKRINDNAYQLDLQD 1103

Query: 1428 PPGSKVHPVFHVSLLKKAVGTYHEGEELPDLE-----GDGGILIEPTEVLA 1473
             P  + +P F        + + ++ E  P+LE      +G  L+   E++A
Sbjct: 1104 EPDLRSNP-FQEGGDDMIMDSINDMEHEPELERELVAEEGAKLVAEDELVA 1153


>At3g31970 hypothetical protein
          Length = 1329

 Score =  473 bits (1217), Expect = e-133
 Identities = 301/829 (36%), Positives = 432/829 (51%), Gaps = 108/829 (13%)

Query: 712  YHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFD 771
            +  + + E +V KTAFRT  GH+EF+VMPFGL N P+ F  LMN +F+  L + V++F D
Sbjct: 570  FEDIPIAEANVRKTAFRTRYGHFEFVVMPFGLTNIPTAFMRLMNSVFQEFLDEFVIIFID 629

Query: 772  DILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSK 831
            DILVYSK    H    +E  G                     E  G  +   GV VD  K
Sbjct: 630  DILVYSKSPEEHEVQSEESDG---------------------EAAGAEV---GVSVDLEK 665

Query: 832  VESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAF 890
            +E++  WP P N   +R FLGL GYY++F++ +  +A+P+T+LT K+  F WS +  E F
Sbjct: 666  IEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTKLTGKDVPFVWSPECDEGF 725

Query: 891  ETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSA 950
             +LK+ LT++PVLALP+  + + +  DAS VG+  +LMQ                     
Sbjct: 726  MSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRG------------------- 766

Query: 951  YEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEI 1010
                                    KV TD +SLK +  Q  + + Q+ W   +  +D EI
Sbjct: 767  ------------------------KVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEI 802

Query: 1011 SYKPGKLNKGADALSR----------VNETLELRQMGSHVDWLGGKDLKEEVSKDEELQR 1060
            +Y  GK N  ADALSR          V+E   LR      + LG     E V + + L R
Sbjct: 803  AYHSGKANVVADALSRKRVGGSVEALVSEIGALRLCVMAQEPLG----LEAVDRADLLTR 858

Query: 1061 IIKSVHEKKDSSL-------GYTYE---NGILLYEGRLVLPRESPLIHTMLTEFHTTPQG 1110
            +   + ++KD  L       G  Y+   NG +L  GR+ +P++  L   +L+E H +   
Sbjct: 859  V--RLAQEKDEGLIAASKADGSEYQFAANGTILVHGRVCVPKDEELRREILSEAHASMFS 916

Query: 1111 GHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWE 1170
             H    + YR L     W GMK  V ++V +CDVCQ  K     PGGLLQ LPI E  W+
Sbjct: 917  IHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVPGGLLQSLPILEWKWD 976

Query: 1171 DLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPS 1230
             ++MDF+ GLP S+  +AI V+VDRL+K AHF+ ++    A  +A+ +  EIV LHGVP 
Sbjct: 977  FITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAVLLAKKYVSEIVELHGVPV 1036

Query: 1231 SIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPK 1290
            SIVSDRD  F S FWR      GTK++MSTAYHP++DGQSE   + LE  LR  + D+  
Sbjct: 1037 SIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDRGG 1096

Query: 1291 TWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEA 1350
             W   +   E+ YN  + AS  + PFE +YGRP  T   W Q   R       +LE  E 
Sbjct: 1097 HWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERSIYGADYVLETTER 1156

Query: 1351 LRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHR--QKSVVTRIYAKLAAKY 1408
            +R L+L +  AQDR + +AD++R +  F +G+ V++K+   R   +S+      KL  +Y
Sbjct: 1157 IRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISE---TKLTPRY 1213

Query: 1409 YGPYPVVARVGAVAYQLKLPPGSKV-HPVFHVSLLKKAVGTYHEGEE-----LPDLEGDG 1462
             GP+ +V RVG VAY+L+LP   +  H VFHVS+L+K +   H+ +E     L DL+ + 
Sbjct: 1214 MGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCL---HKDDEVLAKILEDLQPNM 1270

Query: 1463 GILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQF 1511
             +   P  +L  R  +L+ + I  I + W      E TWE    +K+ F
Sbjct: 1271 TLEARPVRILERRIKELRRKKIPLIKVLWNCDGVTEETWEPEARMKASF 1319



 Score = 34.7 bits (78), Expect = 0.45
 Identities = 41/158 (25%), Positives = 66/158 (40%), Gaps = 12/158 (7%)

Query: 104 FDGDDPA---GWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLS--EEENLTW 158
           F G  P     W SR E  F     P E R  LA   +EG    ++ S+ +   + +++W
Sbjct: 159 FGGTSPEEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQAHMSW 218

Query: 159 ERFKCALLERYGGQGDGDVYE-QLTELRQ-RGTVEEYITAFEYLTAQIPR--LPEKQFLG 214
             F      +Y  Q   D  E +  EL Q   +V EY   F  L     R    ++  + 
Sbjct: 219 ADFVAEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNRLLVYAGRGMQDDQAQMR 278

Query: 215 YFLHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERE 252
            FL GL+ ++R R R    +   ++  +++ A  VE +
Sbjct: 279 RFLRGLRPDLRVRCR---VLQYATKAALVETAAEVEED 313


>At4g07850 putative polyprotein
          Length = 1138

 Score =  395 bits (1014), Expect = e-109
 Identities = 218/508 (42%), Positives = 293/508 (56%), Gaps = 54/508 (10%)

Query: 821  SGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKN-G 879
            S  GV+VD  KV+++  WP+PK+V  VR F GL G+YR+F+RD+  +A PLTE+ KKN G
Sbjct: 533  STDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKNVG 592

Query: 880  FEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSK 939
            F+W +  ++AF+ LK+KLT +PVL+LPDF K F IECDA GVG+GA+LMQ+K+PIAYFS+
Sbjct: 593  FKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYFSE 652

Query: 940  ALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNW 999
             LG   L+   Y+KEL AL  A+Q W+ YL  + F + TD  SLK L  Q+ +      W
Sbjct: 653  KLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARW 712

Query: 1000 AAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEEVSKDEELQ 1059
               +  F + I YK GK N  ADALSR +E                              
Sbjct: 713  VEFIETFPYVIKYKKGKDNVVADALSRRHE------------------------------ 742

Query: 1060 RIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTY 1119
                                G L Y+ RL +P  S L    + E H     GH G  +T 
Sbjct: 743  --------------------GFLFYDNRLCIPNSS-LRELFIREAHGGGLMGHFGVSKTL 781

Query: 1120 RRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITG 1179
            + +  + +W  MK  V+   ++C  C++ K   S P GL  PLPIP   W D+SMDF+ G
Sbjct: 782  KVMQDHFHWPHMKRDVERMCERCTTCKQAK-AKSQPHGLCTPLPIPLHPWNDISMDFVVG 840

Query: 1180 LPKSK-GFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDP 1238
            LP+++ G ++I VVVDR SK AHFIP      A  +A +F +E+VRLHG+P +IVSDRD 
Sbjct: 841  LPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDT 900

Query: 1239 IFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPW 1298
             F+S FW+ L+   GTKL  ST  HP++DGQ+EVVNR L T LR  I    KTW   +P 
Sbjct: 901  KFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPH 960

Query: 1299 AEYWYNTCFHASTGVTPFEVVYGRPPPT 1326
             E+ YN   H++T  +PF++VYG  P T
Sbjct: 961  VEFAYNHSVHSATKFSPFQIVYGFNPIT 988



 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 33/73 (45%), Positives = 40/73 (54%)

Query: 596 PKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSS 655
           P+GLPP R  +H I    G    N   YR    +  E+E QV EL+E G I  S S  + 
Sbjct: 457 PEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERGHICESMSPCAV 516

Query: 656 PVILVKKKDHSWR 668
           PV+LV KKD SWR
Sbjct: 517 PVLLVPKKDGSWR 529



 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 286 VFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKG 345
           +F K  K  ++   YN+S+            +  K    P+    +     + + R +  
Sbjct: 219 MFEKQIKRRSAKPSYNSSKPSYQREEKSGFQKEYKPFVKPKVEEISSKGKEKEVTRTRDL 278

Query: 346 LCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGE-LSSMSLS 404
            CFKC G  H   +C +K  R++I+ D  E E        E  + EE+ +GE L +M + 
Sbjct: 279 KCFKCHGLGHYASECSNK--RIMIIRDSGEVESEDE--KPEESDVEEAPKGELLVTMRVL 334

Query: 405 QVEQVGKDKPQTIKLLG---LIQGLPIVILIDSGATHNFVSTSLVHKLG 450
            V    +++ Q   L     LI+G    ++ID G+  N  S ++V KLG
Sbjct: 335 SVLNKAEEQAQRENLFHTRCLIKGKVCSLIIDGGSCTNVASETMVQKLG 383


>At4g16910 retrotransposon like protein
          Length = 687

 Score =  387 bits (993), Expect = e-107
 Identities = 246/681 (36%), Positives = 366/681 (53%), Gaps = 43/681 (6%)

Query: 867  IAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGA 925
            +A+P+T+LT K+  F WSE+ + +F  LK  LT +PVL LP+  + +T+  DAS VG+G 
Sbjct: 1    MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60

Query: 926  ILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKE 985
            +L+Q+   IAY S+ L     +    + E+ A+  A++ WR YL G   ++ TD +SLK 
Sbjct: 61   VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120

Query: 986  LLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLEL-RQMGSHVDWLG 1044
            +  Q  + + Q+ W   +  +D  I+Y PGK N+  DALSR+   +E  R   + V+ +G
Sbjct: 121  IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAERNQVNLVNMMG 180

Query: 1045 G---KDLKEEV-------SKDEELQRIIKSVHEKKDSSLGYTYEN---------GILLYE 1085
                  L +EV       +   +L   I+S  E+ +   G+   N         G ++  
Sbjct: 181  TLHLNALSKEVEPLGLRAANQADLLSRIRSAQERDEEIKGWAQNNKTEYQSSNNGTIVVN 240

Query: 1086 GRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVC 1145
            GR+  P +  L   +L E H +    H G  + YR L    +W GMK  V  +V      
Sbjct: 241  GRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVA----- 295

Query: 1146 QRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLP---KSKGFEAILVVVDRLSKYAHF 1202
               K     P G+LQ LPIPE  W+ + MDF+TGLP   KSK   A+ VVVDRL+K AHF
Sbjct: 296  ---KEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSK-HNAVWVVVDRLTKSAHF 351

Query: 1203 IPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAY 1262
            + +     A+ +AE +  EIVRLHG+P SIVSDRD  F S FW+   K+ GT++ +STAY
Sbjct: 352  MAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAY 411

Query: 1263 HPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGR 1322
            HP++DGQSE   + LE  LR  + D    W  ++   E+ YN  F AS G++P+E +YGR
Sbjct: 412  HPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGR 471

Query: 1323 PPPTITRWIQ-GETRV--EAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFS 1379
               T   W   GE R+   AV  E  ++   ++ L+++L  AQDR K +A+++R +  F 
Sbjct: 472  AGRTPLCWTPVGERRLFGPAVVDETTKK---MKFLKIKLKEAQDRQKSYANKRRKELEFQ 528

Query: 1380 IGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPG-SKVHPVFH 1438
            +G+ V++K   ++     T    KL  +Y GPY V+ RVGAVAY+L LPP     H VFH
Sbjct: 529  VGDLVYLKAMTYKGAGRFTS-RKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFH 587

Query: 1439 VSLLKKAVGTYHEGEE--LPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQP 1496
            VS L+K +    E  E   P L+ +  +   P  ++       +G+S+  + I W     
Sbjct: 588  VSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGR 647

Query: 1497 EEATWEDVDMIKSQFPSFCLE 1517
            EE TWE    +K+ FP +  E
Sbjct: 648  EEYTWETETKMKANFPEWFKE 668


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  381 bits (978), Expect = e-105
 Identities = 204/496 (41%), Positives = 297/496 (59%), Gaps = 9/496 (1%)

Query: 478 LMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGH 537
           + ++     +  D  +  L   D++LG++WL      I +  ++ + F      +  QG 
Sbjct: 19  ISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKGHI-DCHRERIQFERDEGMLKFQGI 77

Query: 538 EEQEGLLVALQTMISRAGFSGYLGK--EKVQLEKDNKGVTGVQQAELDMILERHSVVFQA 595
               G LV     IS       LGK  E        K V    + +  +I+   S VF A
Sbjct: 78  RTTSGSLV-----ISAIQAERMLGKGCEAYLATITTKEVGASAELKDILIVNEFSDVFAA 132

Query: 596 PKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSS 655
             G+PP R+    I L+ G  P++  PYR    +  E++ Q++ELL  G IR S+S + +
Sbjct: 133 VSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSPWGA 192

Query: 656 PVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQV 715
           PV+ VKKKD S+R+C+DYR LNK T+ +K+P+P I+EL+D+L GA++FSK+DL SGYHQ+
Sbjct: 193 PVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQI 252

Query: 716 RVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILV 775
            ++  DV KTAFRT  GH+EF+VMPFGL NAP+ F  +MN +FR  L + V++F DDILV
Sbjct: 253 PIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILV 312

Query: 776 YSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESV 835
           +SK W +H EHL+ VL  LRE  L A   K  F +  V +LGH+IS QGV VDP K+ S+
Sbjct: 313 HSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSI 372

Query: 836 TSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELT-KKNGFEWSEKAQEAFETLK 894
             WP P+N   +R FLGL GYYR+F+  +  +A+PLT LT K   F WS++ +++F  LK
Sbjct: 373 KEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELK 432

Query: 895 KKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKE 954
             L  +PVL LP+  + +T+  DAS VG+G +LMQ+   IAY S+ L     +   ++ E
Sbjct: 433 AMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLE 492

Query: 955 LMALGLAIQHWRPYLL 970
           + A+  A++ WR YL+
Sbjct: 493 MAAVVFALKIWRSYLI 508



 Score =  269 bits (687), Expect = 1e-71
 Identities = 159/389 (40%), Positives = 224/389 (56%), Gaps = 13/389 (3%)

Query: 1076 TYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAV 1135
            T  NG ++  GR+ +P +  L   +L E H +    H G  + YR L    +W GM+  V
Sbjct: 531  TSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRKDV 590

Query: 1136 QDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLP---KSKGFEAILVV 1192
              +V +C  CQ  K     P GLLQ LPI E  W+ ++MDF+T LP   KSK   A+ VV
Sbjct: 591  ARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSK-HNAVWVV 649

Query: 1193 VDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQ 1252
            VDRL+K AHF+ +     A+ +AE +  EI+RLHG+P SIVSDRD  F S FW    K  
Sbjct: 650  VDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKAL 709

Query: 1253 GTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTG 1312
            GT++ +STAYHP++DGQSE   + LE  LR  + D    W  ++   E+ YN  F AS G
Sbjct: 710  GTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIG 769

Query: 1313 VTPFEVVYGRPPPTITRWIQ-GETRV--EAVQKELLERDEALRQLRLQLARAQDRMKQFA 1369
            ++P+E +YGR   T   W   GE R+    +  E  ER   ++ L+++L  AQDR K +A
Sbjct: 770  MSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTER---MKFLKIKLKEAQDRQKSYA 826

Query: 1370 DRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPP 1429
            +++R +  F +G+ V++K   ++     T    KL+ +Y GPY V+ RVGAVAY+L LPP
Sbjct: 827  NKRRKELEFQVGDLVYLKAMTYKGAGRFTS-RKKLSPRYVGPYKVIERVGAVAYKLDLPP 885

Query: 1430 GSKV-HPVFHVSLLKKAVGTYHEG-EELP 1456
               V H VFHVS L+K +    E  E++P
Sbjct: 886  KLNVFHNVFHVSQLRKYLSDQEESVEDIP 914


>At2g14640 putative retroelement pol polyprotein
          Length = 945

 Score =  319 bits (817), Expect = 9e-87
 Identities = 155/320 (48%), Positives = 216/320 (67%), Gaps = 9/320 (2%)

Query: 1208 PYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESD 1267
            P  ++SVA  F   +V+LHG+P SIVSD DPIF+S FW+E +KL  TKL MSTAYHP++D
Sbjct: 628  PLLSRSVAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTD 687

Query: 1268 GQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTI 1327
            GQ+EVVNRC+E +LRCF+   PK W  +IPWAEYWYNT FHASTG+TPF+ +YGRPP  I
Sbjct: 688  GQTEVVNRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRPPSPI 747

Query: 1328 TRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVK 1387
              +  G      + +++  RDE L +L+  L  A + MKQ AD +  D SF +G+WV ++
Sbjct: 748  PAYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLR 807

Query: 1388 LRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVG 1447
            ++ +RQK++  R   KL+ ++YGP+ V ++ G VAY+L LP G+++HPVFHVSLLK  VG
Sbjct: 808  IQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRIHPVFHVSLLKPWVG 867

Query: 1448 TYHEGE----ELPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWED 1503
               +GE    +LP L  +G + ++PT VL  R      + +  +L+QW+G   E+ATWE+
Sbjct: 868  ---DGEPDMGQLPPLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEE 924

Query: 1504 VDMIKSQFPSFC--LEDKAR 1521
             D + + FP F   LEDK R
Sbjct: 925  YDQLAASFPEFVLNLEDKVR 944



 Score =  220 bits (560), Expect = 6e-57
 Identities = 133/386 (34%), Positives = 202/386 (51%), Gaps = 37/386 (9%)

Query: 386 EVIEEEESSEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSL 445
           E +EEE +       ++L  +E  G D   TI++   I    ++ LI+SG+THNF+    
Sbjct: 289 EAVEEESTEAEGKPEITLYALE--GVDTTSTIRVRATIHRNRLIALINSGSTHNFIGEKA 346

Query: 446 VHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGI 505
           V  +      T    + + +G     + + + + ++ G     V      L  +D+ +G+
Sbjct: 347 VRGMNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLYALPLMGLDLAMGV 406

Query: 506 EWLRTLGDMIVNWDKKTMSF-WSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEK 564
           +WL TLG  + NW ++T+ F W+G + V L G +      V  +T+  +A     +    
Sbjct: 407 QWLSTLGPTLCNWKEQTLQFHWAGDE-VRLMGIKPTGLRGVEHKTITKKARMGHTIFAIT 465

Query: 565 VQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYR 624
           +     N         E+  ++E  + +F+ P  LP +R   H I LK+G  PVNVRPYR
Sbjct: 466 MA---HNSSDPNTPDGEIKKLIEEFAGLFETPTQLPSERPIVHRIALKKGTDPVNVRPYR 522

Query: 625 YPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDK 684
           Y  +QK+E+          G+IR S+S F SPV+L                       ++
Sbjct: 523 YAFYQKDEMSR-------AGIIRPSSSPFLSPVLL-----------------------ER 552

Query: 685 FPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLM 744
           FPIP ++++LDEL+GA YF+KLDL +GY QVR+   D+ K AF+TH GHYE+LVMPFGL 
Sbjct: 553 FPIPTVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAFQTHNGHYEYLVMPFGLC 612

Query: 745 NAPSTFQSLMNDIFRHLLRKRVLVFF 770
           NAPSTFQ+LMN+IF  LL + V   F
Sbjct: 613 NAPSTFQALMNEIFWPLLSRSVAAKF 638



 Score = 38.9 bits (89), Expect = 0.024
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 28/132 (21%)

Query: 98  KVELPMFDGDDPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLT 157
           K++ P F G D   W+S+A+ YF   + P E         ++G              N  
Sbjct: 105 KLDFPRFHGGDLTKWLSKAKQYFEYHEGPVEQAVRFTTFHLDGVA------------NGW 152

Query: 158 WERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFL 217
           W+    A L R    G            Q G++ EY   FE+L  ++    ++  +G F+
Sbjct: 153 WQ----ATLRRSATIG------------QTGSLSEYQHEFEWLQNKVYGWTQEVLVGAFM 196

Query: 218 HGLKGEIRGRVR 229
           +GL   I   +R
Sbjct: 197 NGLYYSISNGIR 208


>At4g07830 putative reverse transcriptase
          Length = 611

 Score =  296 bits (757), Expect = 8e-80
 Identities = 207/629 (32%), Positives = 309/629 (48%), Gaps = 71/629 (11%)

Query: 928  MQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELL 987
            MQ  + IAY S+ L     +   ++ E+ A                  V TD +SLK + 
Sbjct: 1    MQRGKVIAYGSRQLKKHEGNYPTHDLEMAA------------------VFTDHKSLKYIF 42

Query: 988  QQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVN---------ETLELRQMGS 1038
             Q  + +  + W   +  +D EI+Y PGK N   DALSR           ETL +     
Sbjct: 43   TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETLVIEIGAL 102

Query: 1039 HVDWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSL------GYTYE---NGILLYEGRLV 1089
             +  +  + L  E     +L   ++   EK +  +      G+ Y+   NG +L  GR+ 
Sbjct: 103  RLCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAEGFEYQFAANGTILVHGRVC 162

Query: 1090 LPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQK 1149
            +P++  L   +L+E H +    H G  + YR L     W GMK  V ++V++CDVCQ  K
Sbjct: 163  VPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQLVK 222

Query: 1150 YLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPY 1209
                  G LLQ LPIPE  W+ ++MDF+ GLP S+  +AI V+VDRL+K AHF+ ++   
Sbjct: 223  IEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTD 282

Query: 1210 TAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQ 1269
             A  +A+ +  EIV+LHGVP SIVSDRD  F S FWR      GTK++MSTAYHP++DGQ
Sbjct: 283  GAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQ 342

Query: 1270 SEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITR 1329
            SE   + LE  LR  + D    W   +   E+ YN  + AS G+ PFEV+YGRP  T+  
Sbjct: 343  SERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRTLC- 401

Query: 1330 WIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLR 1389
            W Q   R       + E  E +R L+L +  AQ+R + +AD++R +  F +G+ V     
Sbjct: 402  WTQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKELEFEVGDSVSQDGH 461

Query: 1390 AHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKV-HPVFHVSLLKKAVGT 1448
              R +                      RVG VA++L+L    +  H VFHVS+L+K +  
Sbjct: 462  VARSEQ---------------------RVGPVAFRLELSDVMRAFHKVFHVSMLRKCL-- 498

Query: 1449 YHEGEEL-----PDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWED 1503
             H+ +E+      DL+ +  +   P  VL  R  +L+ + I  I +        E TWE 
Sbjct: 499  -HKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLRNCDGVTEETWEP 557

Query: 1504 VDMIKSQFPSFCLEDKARAYGEGIDRTQG 1532
               +K++F  +  +        G+ +TQG
Sbjct: 558  EARLKARFKKWFEKKDV----SGLFQTQG 582


>At4g08100 putative polyprotein
          Length = 1054

 Score =  295 bits (754), Expect = 2e-79
 Identities = 154/349 (44%), Positives = 212/349 (60%), Gaps = 29/349 (8%)

Query: 672  DYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHE 731
            D RA+N  T+  + PIP +++ LD+LHG+  FSK+DLKSGYHQ R+KE D  KTA +T +
Sbjct: 527  DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586

Query: 732  GHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVL 791
              YE+LVMPFGL NAP+TF  LMN + R  +   V+V+FDDILVYSK+   H+ HL+ VL
Sbjct: 587  RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646

Query: 792  GILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFL 851
             +LR++ L AN KKC F  + + +LG ++S  G++VD  KV+++  WP PKNV       
Sbjct: 647  DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNVS------ 700

Query: 852  GLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKE 911
                                    K  GF+W +  + AF+ LK+KLT S V  LP+F K 
Sbjct: 701  -----------------------EKDIGFKWEDAQENAFQALKEKLTNSSVPILPNFMKS 737

Query: 912  FTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLG 971
            F IECDASG+G+GA+LMQ+ +PIAYFS+ LG   L+   Y+KEL AL  A+Q W+ YL  
Sbjct: 738  FEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWP 797

Query: 972  RHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKG 1020
            + F + TD  SLK L  Q+ +      W   +  F + I YK  + + G
Sbjct: 798  KKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKREAHGG 846



 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 1308 HASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQ 1367
            H++T  +PFE+VYG  P +    I      E    +  ++D+ ++Q+ L L     + K+
Sbjct: 851  HSATKFSPFEIVYGFKPTSPLDLIPLPLS-ERSSLDGKKKDDLVQQV-LNLEARTKQYKK 908

Query: 1368 FADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKL 1427
            +A++ R +  F+ G+ V+V LR  R   V +   +KL  +  GP+ V+ R+   AY+L L
Sbjct: 909  YANKGRKEVIFNEGDQVWVHLRKKRFPEVRS---SKLMPRIDGPFKVLKRINNNAYKLDL 965


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  292 bits (748), Expect = 9e-79
 Identities = 245/867 (28%), Positives = 387/867 (44%), Gaps = 124/867 (14%)

Query: 607  HAITLKEGEGPVNVRPYRYPH-HQKNEIENQVKELLEGGVIRH-STSSFSSPVILVKKKD 664
            H I L E E   ++ P R  + + K  ++ ++ +LL+ GVI   S S++ SPV  V KK 
Sbjct: 889  HRIHL-ENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKG 947

Query: 665  H------------------SWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKL 706
                                 RMC++YR LN A+  + FP+P I+ +L+ L    Y+  L
Sbjct: 948  GMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFL 1007

Query: 707  DLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRV 766
            D  SG+ Q+ +   D  KT F    G + +  MPFGL NAP+TFQ  M  IF  L+ + V
Sbjct: 1008 DSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMV 1067

Query: 767  LVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVE 826
             VF DD  VY   + S L +L  VL    E  LV N +KC F   +   LG  IS +G+E
Sbjct: 1068 EVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIE 1127

Query: 827  VDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTE-LTKKNGFEWSEK 885
            VD +K++ +     PK VK +R FLG  G+YR FI+D+ K+A+PLT  L K+  F + ++
Sbjct: 1128 VDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDE 1187

Query: 886  AQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRN 945
               AF+ +K+ L T+P++  P++   F             I+  +   + Y         
Sbjct: 1188 CLTAFKLIKEALITAPIVQAPNWDFPF------------EIITMDDAQVRY--------- 1226

Query: 946  LSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLG 1005
               +  EKEL+A+  A + +R YL+G    + TD  +L+ +  +K        W   L  
Sbjct: 1227 ---ATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQE 1283

Query: 1006 FDFEISYKPGKLNKGADALSRV--------------NETLELRQM--------GSHVDWL 1043
            FD EI  K G  N  AD LSR+               + + ++Q+          HV++L
Sbjct: 1284 FDMEIVDKKGIENGVADHLSRMRIEDEVLIDDSMPEEQLMAIQQLNEKKLPWYADHVNYL 1343

Query: 1044 GGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTE 1103
               +    +S  E+ +      H   D    YT     +    R  +  +   I  +L  
Sbjct: 1344 VSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIY---RTCVSEDE--IEGILLH 1398

Query: 1104 FHTTPQGGHSGFYRTYRR-LAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPL 1162
             H    GGH   ++T  + L A  +W  M    Q+F+ +CD  +                
Sbjct: 1399 CHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFENFD------------- 1445

Query: 1163 PIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEI 1222
                 +W    +DF+   P S G + ILV +D +SK+   I   H   A+ V ++F   I
Sbjct: 1446 -----VW---GIDFMGPFPSSYGNKYILVAIDYVSKWVEAI-ASHTNDARVVLKLFKTII 1496

Query: 1223 VRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLR 1282
                GVP  ++SD    F++  +  L K  G K K S        GQ E+ NR ++  L 
Sbjct: 1497 FPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNREIKAILE 1548

Query: 1283 CFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRP---PPTITRWIQGETRV-- 1337
              +    K W   +    + Y T F    G TPF ++YG+    P  +        ++  
Sbjct: 1549 KTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLN 1608

Query: 1338 ----EAVQKELLERDEALRQLRLQLARA----QDRMKQFADRKRSDRSFSIGEWVFVKLR 1389
                 A +K L++ ++ L ++RL+   +    ++R K F D+K   R F +G+ V +   
Sbjct: 1609 FDIKTAEEKRLIQLND-LNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLL--- 1664

Query: 1390 AHRQKSVVTRIYAKLAAKYYGPYPVVA 1416
                 S +     KL +++ GP+ V A
Sbjct: 1665 ---FNSRLRLFPGKLKSRWSGPFSVTA 1688


>At4g03650 putative reverse transcriptase
          Length = 839

 Score =  274 bits (700), Expect = 3e-73
 Identities = 134/295 (45%), Positives = 192/295 (64%), Gaps = 1/295 (0%)

Query: 719  EEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSK 778
            E DV KTAFRT  GH+EF+VMPFGL NAP+ F  LMN +F+  L + V++F DDILVYSK
Sbjct: 518  EADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSK 577

Query: 779  DWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSW 838
                H  HL+ V+  LREQ L A   KC F + ++ +LGH++S +GV VDP K+E++  W
Sbjct: 578  SPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 637

Query: 839  PTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKL 897
            P P N   +R FLGL GYYR+FI+ +  +A+P+T+LT K+  F WS + +E F +LK+ L
Sbjct: 638  PRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEML 697

Query: 898  TTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMA 957
            T++PVLALP+  + + +  DASGVG+G  LMQ  + IAY S+ L     +   ++ E+ A
Sbjct: 698  TSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAA 757

Query: 958  LGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISY 1012
            +  A++ WR YL G   +V TD +SLK +  Q  + + Q+ W   +  +D EI+Y
Sbjct: 758  VIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAY 812



 Score = 41.2 bits (95), Expect = 0.005
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 573 GVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNE 632
           GV G        +++    VFQ+ +GLPP R+    I L+    P++  PYR    +  E
Sbjct: 448 GVCGQVAVSDIRVVQEFQYVFQSLQGLPPSRSDPFTIELEPKTAPLSKAPYRMAPAKMAE 507

Query: 633 IENQVKELLEGGVIR 647
           ++ Q+++LL    +R
Sbjct: 508 LKKQLEDLLAEADVR 522



 Score = 36.6 bits (83), Expect = 0.12
 Identities = 14/19 (73%), Positives = 18/19 (94%)

Query: 1253 GTKLKMSTAYHPESDGQSE 1271
            GTK++MST YHP++DGQSE
Sbjct: 818  GTKVQMSTTYHPQTDGQSE 836


>At1g20390 hypothetical protein
          Length = 1791

 Score =  219 bits (559), Expect = 8e-57
 Identities = 135/444 (30%), Positives = 225/444 (50%), Gaps = 12/444 (2%)

Query: 581  ELDMILERHSVVF----QAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQ 636
            EL  +L+R+S  F    +  KG+ P     H + +     PV  +  +    +   +  +
Sbjct: 738  ELIALLKRNSKTFAWSIEDMKGIDPAITA-HELNVDPTFKPVKQKRRKLGPERARAVNEE 796

Query: 637  VKELLEGG-VIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLD 695
            V++LL+ G +I      + +  ++VKKK+  WR+CVDY  LNKA   D +P+P I+ L++
Sbjct: 797  VEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVE 856

Query: 696  ELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMN 755
               G    S +D  SGY+Q+ + ++D  KT+F T  G Y + VM FGL NA +T+Q  +N
Sbjct: 857  ATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVN 916

Query: 756  DIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEY 815
             +    + + V V+ DD+LV S     H+EHL +   +L   G+  N  KC FG    E+
Sbjct: 917  KMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEF 976

Query: 816  LGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELT 875
            LG++++ +G+E +P ++ ++   P+P+N + V+   G      +FI        P   L 
Sbjct: 977  LGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLL 1036

Query: 876  KKNG-FEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQ----E 930
            K+   F+W + ++EAFE LK  L+T P+L  P+  +   +    S   V ++L++    E
Sbjct: 1037 KRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGE 1096

Query: 931  KRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQK 990
            +RPI Y SK+L          EK  +A+  + +  RPY       V TDQ  L+  L   
Sbjct: 1097 QRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVALHSP 1155

Query: 991  VVTMEQQNWAAKLLGFDFEISYKP 1014
              +     WA +L  +D +   +P
Sbjct: 1156 SQSGRMTKWAVELSEYDIDFRPRP 1179



 Score = 87.8 bits (216), Expect = 4e-17
 Identities = 90/362 (24%), Positives = 148/362 (40%), Gaps = 22/362 (6%)

Query: 1097 IHTMLTEFHTTPQGGHSGFYRTYRRLAA-NVYWRGMKSAVQDFVKQCDVCQRQKYLASSP 1155
            I+ ++ E H    G HSG      +L     YW  M S  + F  +C+ CQR       P
Sbjct: 1435 INEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQP 1494

Query: 1156 GGLLQP--LPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKS 1213
              LL+    P P   W   +MD +  +P S+    ILV+ D  +K+           A  
Sbjct: 1495 TELLRAGVAPYPFMRW---AMDIVGPMPASRQKRFILVMTDYFTKWVEAESYA-TIRAND 1550

Query: 1214 VAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVV 1273
            V     K I+  HG+P  I++D    F+S  +         +L  ST  +P+ +GQ+E  
Sbjct: 1551 VQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEAT 1610

Query: 1274 NRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQG 1333
            N+ + + L+  + ++   W   +    + Y T   ++T  TPF   YG            
Sbjct: 1611 NKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYS 1670

Query: 1334 ETRVEAVQKE-------LLERDEALRQLR-LQLARAQDRMKQFA---DRKRSDRSFSIGE 1382
              R   + K        +L+R + L ++R   L R Q+     A   ++K  +R F +G+
Sbjct: 1671 SLRRSMMVKNPELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGD 1730

Query: 1383 WVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLL 1442
             V  K+  +  +        KL A + G Y V   V    Y+L    G+ V   ++   L
Sbjct: 1731 LVLRKVFENTAEINA----GKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHL 1786

Query: 1443 KK 1444
            K+
Sbjct: 1787 KR 1788


>At4g04230 putative transposon protein
          Length = 315

 Score =  191 bits (486), Expect = 2e-48
 Identities = 94/169 (55%), Positives = 123/169 (72%)

Query: 644 GVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYF 703
           G IR S S  + PV+LV KKD +WRMC+D RA+N  TI  + PIP + ++LDEL GA  F
Sbjct: 128 GYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAIIF 187

Query: 704 SKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLR 763
           SK+DL+SGYHQVR++E D  KTAF+T +G YE LVMPFGL NAPSTF  LMN + R  + 
Sbjct: 188 SKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFIG 247

Query: 764 KRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREK 812
           K V+V+FDDIL+Y+K +  H++ L+ +L  LR++GL AN KKC F  +K
Sbjct: 248 KFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSDK 296


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,535,203
Number of Sequences: 26719
Number of extensions: 1672735
Number of successful extensions: 5560
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 5187
Number of HSP's gapped (non-prelim): 229
length of query: 1566
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1454
effective length of database: 8,326,068
effective search space: 12106102872
effective search space used: 12106102872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)