BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0096b.3
         (223 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g16430 putative transcription factor BHLH3                          27  6.6
At4g10120 sucrose-phosphate synthase - like protein                    27  8.6
At2g40765 unknown protein                                              27  8.6
At1g79550 phosphoglycerate kinase (EC 2.7.2.3) like protein            27  8.6
At1g31310 unknown protein                                              27  8.6
At1g18970 germin-like protein (GLP4)                                   27  8.6

>At4g16430 putative transcription factor BHLH3
          Length = 467

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 77  VPEVLALDSSLILPDALKFVSVMTKAIRDLIIAKQV 112
           VP +  +D + +L DA+ +++ M K IR     KQ+
Sbjct: 343 VPNISKMDKASLLADAITYITDMQKKIRVYETEKQI 378


>At4g10120 sucrose-phosphate synthase - like protein
          Length = 1083

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 59  HHRMQDVGALVEL---DPGTPVPEVLALDSSLILPDA----LKFVSVMTKAIRDLIIAKQ 111
           HH+  +V  +  L     G  +   L     L L +A    L  V+       D++ A  
Sbjct: 612 HHKQSEVPDIYRLAAKTKGVFINPALVEPFGLTLIEAAAYGLPIVATRNGGPVDIVKALN 671

Query: 112 VGVVFDGTDEEAIESYAIHLVANCH 136
            G++ D  D++AI    + LVAN H
Sbjct: 672 NGLLVDPHDQQAISDALLKLVANKH 696


>At2g40765 unknown protein
          Length = 57

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (57%)

Query: 132 VANCHGGVYLVFCIGFIIKTFYQPPPPND 160
           +A   G +++V   G+I KTF  PPP  +
Sbjct: 28  IAAAAGAIWVVQPFGWIKKTFIDPPPTEE 56


>At1g79550 phosphoglycerate kinase (EC 2.7.2.3) like protein
          Length = 401

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 1/49 (2%)

Query: 38  LLSGNTNGLSIQTRGMLSPHIHHRMQDVGALVELDPGTPVPEVLALDSS 86
           ++ G  +  +++  G L+  + H     GA +EL  G P+P VLALD +
Sbjct: 354 IIGGGDSVAAVEKVG-LADKMSHISTGGGASLELLEGKPLPGVLALDEA 401


>At1g31310 unknown protein
          Length = 383

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 14/42 (33%), Positives = 19/42 (44%)

Query: 49  QTRGMLSPHIHHRMQDVGALVELDPGTPVPEVLALDSSLILP 90
           Q  G + P +H  +Q    L+ L P  P P    L   L+LP
Sbjct: 198 QGLGFVVPKVHQIIQQQPVLLPLQPPPPPPPSQPLPRPLLLP 239


>At1g18970 germin-like protein (GLP4)
          Length = 220

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (53%)

Query: 36  LQLLSGNTNGLSIQTRGMLSPHIHHRMQDVGALVE 70
           L  L  + N + +   G+  PH+H R  +VG ++E
Sbjct: 91  LNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIE 125


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,078,270
Number of Sequences: 26719
Number of extensions: 214890
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 6
length of query: 223
length of database: 11,318,596
effective HSP length: 96
effective length of query: 127
effective length of database: 8,753,572
effective search space: 1111703644
effective search space used: 1111703644
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)