BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0093a.1
         (268 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g61410 ribulose-5-phosphate-3-epimerase                            463  e-131
At3g01850 D-ribulose-5-phosphate 3-epimerase like protein             158  3e-39
At1g63290 D-ribulose-5-phosphate like protein                         154  4e-38
At5g62180 putative protein                                             32  0.27
At1g16350 inosine-5'-monophosphate dehydrogenase                       32  0.46
At3g56460 quinone reductase-like protein                               28  3.9
At3g49700 1-aminocyclopropane-1-carboxylate synthase -like protein     28  5.1
At5g65800 1-aminocyclopropane-1-carboxylate synthase ACS5 (pir||...    28  6.7
At1g52950 replication protein A1, putative                             28  6.7
At1g23090 putative sulphate transporter protein                        27  8.7

>At5g61410 ribulose-5-phosphate-3-epimerase
          Length = 281

 Score =  463 bits (1192), Expect = e-131
 Identities = 233/251 (92%), Positives = 242/251 (95%)

Query: 18  PRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 77
           P S +FSRR+   IVKASSRVD+FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV
Sbjct: 30  PTSFSFSRRRTHGIVKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 89

Query: 78  DVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSIHCEQS 137
           DVMDGRFVPNITIGPL+VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS+HCEQ 
Sbjct: 90  DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQ 149

Query: 138 STIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQ 197
           STIHLHRTVNQ+KSLGAKAGVVLNPGTPLSAIEYVLD+VDLVLIMSVNPGFGGQSFIESQ
Sbjct: 150 STIHLHRTVNQIKSLGAKAGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQ 209

Query: 198 VKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKG 257
           VKKISDLR++CAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKG
Sbjct: 210 VKKISDLRKMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269

Query: 258 IKTSKRPEPVA 268
           IK SKRP  VA
Sbjct: 270 IKASKRPAAVA 280


>At3g01850 D-ribulose-5-phosphate 3-epimerase like protein
          Length = 225

 Score =  158 bits (400), Expect = 3e-39
 Identities = 85/217 (39%), Positives = 132/217 (60%), Gaps = 8/217 (3%)

Query: 48  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLD 107
           ++PS+LS++FA L  +   +   G +W+H+D+MDG FVPN+TIG  ++++LR  T+  LD
Sbjct: 6   IAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLRKHTNAYLD 65

Query: 108 VHLMIVEPEQRVPDFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLS 167
            HLM+  P   V    KAGA   + H E +   +  + V ++KS G + GV L PGTP+ 
Sbjct: 66  CHLMVTNPMDYVAQMAKAGASGFTFHVEVAQD-NWQQLVEKIKSTGMRPGVALKPGTPVE 124

Query: 168 AIEYVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVT 224
            +  +++    V++VL+M+V PGFGGQ F+   + K+  LR    +K     I+VDGG+ 
Sbjct: 125 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALR----QKYPTLDIQVDGGLG 180

Query: 225 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 261
           P+       AGAN +VAGS+VFGA +  + I  ++TS
Sbjct: 181 PSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTS 217


>At1g63290 D-ribulose-5-phosphate like protein
          Length = 227

 Score =  154 bits (390), Expect = 4e-38
 Identities = 85/217 (39%), Positives = 129/217 (59%), Gaps = 8/217 (3%)

Query: 48  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLD 107
           ++PS+LS++FA L  + K +   G +W+H+D+MDG FV N+TIG  ++++LR  T+  LD
Sbjct: 8   IAPSMLSSDFANLAAEAKRMIDLGANWLHMDIMDGHFVSNLTIGAPVIESLRKHTNAYLD 67

Query: 108 VHLMIVEPEQRVPDFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLS 167
            HLM+  P   V    KAGA   + H E +   +    V ++K+ G + GV L PGTP+ 
Sbjct: 68  CHLMVTNPMDYVDQMAKAGASGFTFHVEVAQE-NWQELVKKIKAAGMRPGVALKPGTPVE 126

Query: 168 AIEYVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVT 224
            +  +++    V++VL+M+V PGFGGQ F+ S + K+  LR     K     IEVDGG+ 
Sbjct: 127 QVYPLVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALR----NKYPTLDIEVDGGLG 182

Query: 225 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 261
           P+       AGAN +VAGS+VFGA    + I  ++ S
Sbjct: 183 PSTIDAAAAAGANCIVAGSSVFGAPKPGDVISLLRAS 219


>At5g62180 putative protein
          Length = 327

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 115 PEQRVPDFIKAGADIVS-IHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVL 173
           PE R+P     G + +  I       I  H   + V  +G  AG  L     L +++ V 
Sbjct: 125 PEHRLPAAYDDGVEALDWIKTSDDEWIKSHADFSNVFLMGTSAGGNLAYNVGLRSVDSVS 184

Query: 174 DVVDLVL--IMSVNPGFGGQSFIESQVKKISD 203
           D+  L +  ++  +P FGG+   ES+++ ++D
Sbjct: 185 DLSPLQIRGLILHHPFFGGEERSESEIRLMND 216


>At1g16350 inosine-5'-monophosphate dehydrogenase
          Length = 502

 Score = 31.6 bits (70), Expect = 0.46
 Identities = 34/146 (23%), Positives = 63/146 (42%), Gaps = 18/146 (12%)

Query: 116 EQRVPDFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVV-LNPGTPLSAIEYVLD 174
           ++R+   +KAGA++V +   Q ++I+    +  VK+   +  VV  N  T   A   +  
Sbjct: 247 KERLEHLVKAGANVVVLDSSQGNSIYQLEMIKYVKNTYPELDVVGGNVVTMYQAENLIKA 306

Query: 175 VVDLVLIMSVNPGFGGQSFI---------ESQVKKISDLRRLCAEKGVNPWIEVDGGVT- 224
            VD      +  G G  S             Q   +  +  L A+ GV   +  DGG++ 
Sbjct: 307 GVD-----GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSTLAAQHGVP--VIADGGISN 359

Query: 225 PANAYKVIEAGANALVAGSAVFGAKD 250
             +  K +  GA+ ++ GS + G+ +
Sbjct: 360 SGHIVKALVLGASTVMMGSFLAGSTE 385


>At3g56460 quinone reductase-like protein
          Length = 348

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 121 DFIKAGADIVSIHCEQSSTIHLHR-TVNQVKS-LGAKAGVVLNP-------GTPLSAIEY 171
           D + A A  V+      + +H  R T  QV   LGA  GV L         G  + A+  
Sbjct: 124 DMVAAAALPVAFGTSHVALVHRARLTSGQVLLVLGAAGGVGLAAVQIGKVCGAIVIAVAR 183

Query: 172 VLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYK 230
             + + L+  M V+     G   + S VK+    R+L   KGV+   +  GG     + K
Sbjct: 184 GTEKIQLLKSMGVDHVVDLGTENVISSVKEFIKTRKL---KGVDVLYDPVGGKLTKESMK 240

Query: 231 VIEAGANALVAGSA 244
           V++ GA  LV G A
Sbjct: 241 VLKWGAQILVIGFA 254


>At3g49700 1-aminocyclopropane-1-carboxylate synthase -like protein
          Length = 470

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 18/53 (33%), Positives = 24/53 (44%), Gaps = 7/53 (13%)

Query: 124 KAGADIVSIHCEQSSTIH-----LHRTVNQVKSLGAKAGVVL--NPGTPLSAI 169
           + GA+IV IHC  S+        L +   Q + L  K   VL  NP  PL  +
Sbjct: 155 RTGAEIVPIHCSSSNGFQITESALQQAYQQAQKLDLKVKGVLVTNPSNPLGTM 207


>At5g65800 1-aminocyclopropane-1-carboxylate synthase ACS5
           (pir||S71174)
          Length = 470

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 124 KAGADIVSIHCEQSSTIH-----LHRTVNQVKSLGAKAGVVL--NPGTPL 166
           + GA+IV IHC  S+        L +   Q + L  K   VL  NP  PL
Sbjct: 155 RTGAEIVPIHCSSSNGFQITESALQQAYQQAQKLDLKVKGVLVTNPSNPL 204


>At1g52950 replication protein A1, putative
          Length = 566

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 74  WIHVDVMDGRFVPNITIGPLIVDAL--RPVTDLPLDVHLMIVEPEQRVPDFIK 124
           W+H+D+MD      + +    V+ +   P T+L LDV    ++  Q +PD +K
Sbjct: 347 WLHLDIMDNTGESKLMLFDSFVEPIIGCPATEL-LDVTNEQIDEPQPLPDVVK 398


>At1g23090 putative sulphate transporter protein
          Length = 631

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 84  FVPNITIGPLIVDALRPVTDLPLDVHLMIVE 114
           + PN+ +G +IV A+  + DLP   H+  ++
Sbjct: 407 YTPNVVLGAIIVTAVIGLIDLPAACHIWKID 437


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,645,927
Number of Sequences: 26719
Number of extensions: 226822
Number of successful extensions: 556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 10
length of query: 268
length of database: 11,318,596
effective HSP length: 98
effective length of query: 170
effective length of database: 8,700,134
effective search space: 1479022780
effective search space used: 1479022780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)