BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0086.17
(1019 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61330 copia-type polyprotein 736 0.0
At1g58140 hypothetical protein 732 0.0
At1g48710 hypothetical protein 731 0.0
At3g60170 putative protein 731 0.0
At2g15650 putative retroelement pol polyprotein 692 0.0
At1g32590 hypothetical protein, 5' partial 638 0.0
At3g59720 copia-type reverse transcriptase-like protein 634 0.0
At3g25450 hypothetical protein 625 e-179
At2g20460 putative retroelement pol polyprotein 613 e-175
At2g16000 putative retroelement pol polyprotein 599 e-171
At2g05390 putative retroelement pol polyprotein 568 e-162
At1g70010 hypothetical protein 566 e-161
At1g31210 putative reverse transcriptase 559 e-159
At1g37110 533 e-151
At2g21460 putative retroelement pol polyprotein 523 e-148
At2g13930 putative retroelement pol polyprotein 516 e-146
At1g26990 polyprotein, putative 514 e-145
At5g35820 copia-like retrotransposable element 508 e-144
At4g17450 retrotransposon like protein 506 e-143
At4g03810 putative retrotransposon protein 477 e-134
>At3g61330 copia-type polyprotein
Length = 1352
Score = 736 bits (1900), Expect = 0.0
Identities = 400/1015 (39%), Positives = 569/1015 (55%), Gaps = 26/1015 (2%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV----DSSPCIDNV 58
WYLDSG S HM G + MF EL G V G K ++ G G I + I NV
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNV 394
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 118
+ + N+LS+ QL +KGYD+ + Q + KN ++ + + A
Sbjct: 395 YYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIA 454
Query: 119 QNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFT 178
Q +K + EE +WH R GH++ + LS+ +VRGLP + + +CE C K
Sbjct: 455 QCLK--MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQF 511
Query: 179 KVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDES 238
K+ F ++ +PLEL+H D+ GP+K +S+G Y ++ +DD+SR TWV FL K E
Sbjct: 512 KMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEV 571
Query: 239 HAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVV 298
+F F A V+ E I +RSD GGEF + +F + GI + PR+PQ NGVV
Sbjct: 572 FEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVV 631
Query: 299 ERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNI 358
ERKNRT+ EMAR+ML+ + K WAEAV Y+ NR + + KT E W KP +
Sbjct: 632 ERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGV 691
Query: 359 SYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFD 418
S+ FG + + ++ K D KS K + +GY + SKG++ YN D K S ++ FD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751
Query: 419 DKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAAHP 478
++ + D + E + D+ + E P EE P+ SQ ++ S
Sbjct: 752 EEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESS------- 804
Query: 479 KELILGNKDEPVRTRSAFRPSEETL----LSLKGLMSLIEPKSIDEALQDKDWILAMEEE 534
+ R RS E T L+L L + EP +A++ K W AM+EE
Sbjct: 805 -------SERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEE 857
Query: 535 LNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTE 594
+ KND W L P IG KWV++ K N KG+V R KARLVA+GYSQ+ GIDY E
Sbjct: 858 IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDE 917
Query: 595 TFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHV 654
FAPVARLE V+L+IS + + +HQMDVKSAFLNG + EEVY+ QP G+ + D V
Sbjct: 918 VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977
Query: 655 FKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIF 714
+LKK LYGLKQAPRAW R+ + E +F++ + L+ K K+DILI +YVDD+IF
Sbjct: 978 LRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIF 1037
Query: 715 GSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMT 774
N + +EF + M EFEM+ +G + Y++GI+V Q G +I Q Y KE+LKKF +
Sbjct: 1038 TGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKID 1097
Query: 775 ELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDP 834
+ TPM L K++ V ++ ++GSL YLT +RPDIL++V + +R+ P
Sbjct: 1098 DSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHP 1157
Query: 835 RETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGS 894
TH A KRILRY+KG+ N GL Y TS+YKL GY D+D+ GD +RKSTSG ++G
Sbjct: 1158 TTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGD 1217
Query: 895 NLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAI 953
+W SK+Q + LST EAEY+ A C +W+++ L++ + E I+ DN +AI
Sbjct: 1218 TAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAI 1277
Query: 954 SLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRF 1008
+L+KNP+ H R+KHI+ +YH+IR+ V K + L++V Q AD FTKPL + F
Sbjct: 1278 ALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENF 1332
>At1g58140 hypothetical protein
Length = 1320
Score = 732 bits (1890), Expect = 0.0
Identities = 395/1011 (39%), Positives = 559/1011 (55%), Gaps = 50/1011 (4%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV----DSSPCIDNV 58
WYLDSG S HM G + MF EL G V G K ++ G G I + I NV
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNV 394
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 118
+ + N+LS+ QL +KGYD+ + Q + KN ++ + + A
Sbjct: 395 YYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIA 454
Query: 119 QNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFT 178
Q +K + EE +WH R GH++ + LS+ +VRGLP + + +CE C K
Sbjct: 455 QCLK--MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQF 511
Query: 179 KVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDES 238
K+ F ++ +PLEL+H D+ GP+K +S+G Y ++ +DD+SR TWV FL K E
Sbjct: 512 KMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEV 571
Query: 239 HAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVV 298
+F F A V+ E I +RSD GGEF + +F + GI + PR+PQ NGV
Sbjct: 572 FEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVA 631
Query: 299 ERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNI 358
ERKNRT+ EMAR+ML+ + K WAEAV Y+ NR + + KT E W KP +
Sbjct: 632 ERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGV 691
Query: 359 SYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFD 418
S+ FG + + ++ K D KS K + +GY + SKG++ YN D K S ++ FD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751
Query: 419 DKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAAHP 478
++ + D + E + DK + E P EE P+ SQ ++K
Sbjct: 752 EEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEEKC------- 804
Query: 479 KELILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIEPKSIDEALQDKDWILAMEEELNQF 538
EP EA++ K W AM+EE+
Sbjct: 805 -----------------------------------EPMDFQEAIEKKTWRNAMDEEIKSI 829
Query: 539 SKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 598
KND W L P IG KWV++ K N KG+V R KARLVA+GYSQ+ GIDY E FAP
Sbjct: 830 QKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAP 889
Query: 599 VARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLK 658
VARLE V+L+IS + + +HQMDVKSAFLNG + EEVY+ QP G+ + D V +LK
Sbjct: 890 VARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLK 949
Query: 659 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSAN 718
K+LYGLKQAPRAW R+ + E +F++ + L+ K K+DILI +YVDD+IF N
Sbjct: 950 KALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNN 1009
Query: 719 QFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMTELVI 778
+ +EF + M EFEM+ +G + Y++GI+V Q G +I Q Y KE+LKKF M +
Sbjct: 1010 PSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNP 1069
Query: 779 AKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETH 838
TPM L K++ V ++ ++GSL YLT +RPDIL++V + +R+ P TH
Sbjct: 1070 VCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTH 1129
Query: 839 LTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVS 898
A KRILRY+KG+ N GL Y TS+YKL GY D+D+ GD +RKSTSG ++G +
Sbjct: 1130 FKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFT 1189
Query: 899 WASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSK 957
W SK+Q + LST EAEY+ A C +W+++ L++ + E I+ DN +AI+L+K
Sbjct: 1190 WMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAK 1249
Query: 958 NPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRF 1008
NP+ H R+KHI+ +YH+IR+ V K + L++V Q ADIFTKPL + F
Sbjct: 1250 NPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDF 1300
>At1g48710 hypothetical protein
Length = 1352
Score = 731 bits (1888), Expect = 0.0
Identities = 399/1015 (39%), Positives = 567/1015 (55%), Gaps = 26/1015 (2%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV----DSSPCIDNV 58
WYLDSG S HM G + MF EL G V G K ++ G G I + I NV
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNV 394
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 118
+ + N+LS+ QL +KGYD+ + Q + KN ++ + + A
Sbjct: 395 YYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIA 454
Query: 119 QNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFT 178
Q +K + EE +WH R GH++ + LS+ +VRGLP + + +CE C K
Sbjct: 455 QCLK--MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQF 511
Query: 179 KVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDES 238
K+ F ++ + LEL+H D+ GP+K +S+G Y ++ +DD+SR TWV FL K E
Sbjct: 512 KMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEV 571
Query: 239 HAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVV 298
+F F A V+ E I +RSD GGEF + +F + GI + PR+PQ NGV
Sbjct: 572 FEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVA 631
Query: 299 ERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNI 358
ERKNRT+ EMAR+ML+ + K WAEAV Y+ NR + + KT E W K +
Sbjct: 632 ERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGV 691
Query: 359 SYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFD 418
S+ FG + + ++ K D KS K + +GY + SKG++ YN D K S ++ FD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751
Query: 419 DKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAAHP 478
++ + D + E + D+ + E P EE P+ SQ ++ S
Sbjct: 752 EEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESS------- 804
Query: 479 KELILGNKDEPVRTRSAFRPSEETL----LSLKGLMSLIEPKSIDEALQDKDWILAMEEE 534
+ R RS E T L+L L + EP EA++ K W AM+EE
Sbjct: 805 -------SERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEE 857
Query: 535 LNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTE 594
+ KND W L P IG KWV++ K N KG+V R KARLVA+GY Q+ GIDY E
Sbjct: 858 IKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDE 917
Query: 595 TFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHV 654
FAPVARLE V+L+IS + + +HQMDVKSAFLNG + EEVY+ QP G+ + D V
Sbjct: 918 VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977
Query: 655 FKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIF 714
+LKK+LYGLKQAPRAW R+ + E +F++ + L+ K K+DILI +YVDD+IF
Sbjct: 978 LRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIF 1037
Query: 715 GSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMT 774
N + +EF + M EFEM+ +G + Y++GI+V Q G +I Q Y KE+LKKF M
Sbjct: 1038 TGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMD 1097
Query: 775 ELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDP 834
+ TPM L K++ V ++ ++GSL YLT +RPDIL++V + +R+ P
Sbjct: 1098 DSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHP 1157
Query: 835 RETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGS 894
TH A KRILRY+KG+ N GL Y TS+YKL GY D+D+ GD +RKSTSG ++G
Sbjct: 1158 TTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGD 1217
Query: 895 NLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAI 953
+W SK+Q + LST EAEY+ A C +W+++ L++ + E I+ DN +AI
Sbjct: 1218 TAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAI 1277
Query: 954 SLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRF 1008
+L+KNP+ H R+KHI+ +YH+IR+ V K + L++V Q ADIFTKPL + F
Sbjct: 1278 ALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDF 1332
>At3g60170 putative protein
Length = 1339
Score = 731 bits (1886), Expect = 0.0
Identities = 411/1036 (39%), Positives = 595/1036 (56%), Gaps = 24/1036 (2%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSS---PCIDNVL 59
W+LDSGCS HMTG + F EL+ V G + + +VG G++ V + I V
Sbjct: 300 WFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVY 359
Query: 60 LVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQ 119
V L +NLLS+ QL ++G ++ +C+ G+++ + N ++ + S+ + +
Sbjct: 360 YVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQ-K 418
Query: 120 NVKCLLS---VNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDK 176
N CL + +++E +WH R GH++ + L+ +V GLP LK + + +C C K
Sbjct: 419 NSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKE-ICAICLTGK 477
Query: 177 FTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKD 236
+ K +S L+L+H D+ GP+ S GKRY + +DD++R TWV FL K
Sbjct: 478 QHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKS 537
Query: 237 ESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NG 296
E+ A F F A V+ E + +R+D GGEF +++F S+GI+ ++ TPQ NG
Sbjct: 538 EAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNG 597
Query: 297 VVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKP 356
V ERKNRT+ R+ML E + K FW+EA +IQNR + T E W KP
Sbjct: 598 VAERKNRTIMNAVRSMLSERQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKP 657
Query: 357 NISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVR 416
+ YF FGC+ YV + K D KS KC+ LG S+ SK +R Y+ K I S V
Sbjct: 658 VVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVISKDVV 717
Query: 417 FDD--KLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRIT 474
FD+ D DQ+ + K L D K E EP G SD+ +
Sbjct: 718 FDEDKSWDWDQADVEAKEVTLECGDEDDEKNSEVVEPIAVASPNHVG-SDNNVSSSPILA 776
Query: 475 AAHPKELILGNKDEPVRTRSAFRPSEET--------LLSLKGLMSLIE--PKSIDEALQD 524
+ P + K R + ET LS+ LM + E P D+A++D
Sbjct: 777 PSSPAPSPVAAKVTRERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKD 836
Query: 525 KDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGY 584
K W AME E+ KN+ W L P+ IG KWV++ KLNE G+V + KARLVA+GY
Sbjct: 837 KIWREAMEHEIESIVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGY 896
Query: 585 SQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPG 644
+Q GIDYTE FAPVARL+ V+ +++ S N + Q+DVKSAFL+G + EEVYV QP G
Sbjct: 897 AQCYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEG 956
Query: 645 FKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILI 704
F E + V+KL+K+LYGLKQAPRAWY R+ ++ L+ EF R + TLF KT +ILI
Sbjct: 957 FIREGEEEKVYKLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGNILI 1016
Query: 705 VQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYT 764
V +YVDD+IF +++ +C EF + M EFEMS +G++K+F+GI+V Q+ G +I Q +Y
Sbjct: 1017 VSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYA 1076
Query: 765 KELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSV 824
+E+L +F M E K P+ P L K++ KV + +++ ++GSL+YLT +RPD+++ V
Sbjct: 1077 REVLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGV 1136
Query: 825 HLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMY--KKTSEYKLSGYCDADYVGDRTER 882
L +RF S+PR +H A KRILRYLKG+ LG+ Y +K KL + D+DY GD +R
Sbjct: 1137 CLISRFMSNPRMSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDR 1196
Query: 883 KSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILE-S 941
+STSG + S + WASK+Q +ALST EAEYI AA C+ Q +W++ LE E S
Sbjct: 1197 RSTSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKS 1256
Query: 942 NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTK 1001
I CDN++ I LSK+P+LH ++KHIEV++H++RD V V+ L++ + Q ADIFTK
Sbjct: 1257 ATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTK 1316
Query: 1002 PLAEDRFNFILKNLNM 1017
PL ++F + L M
Sbjct: 1317 PLKLEQFEKLRALLGM 1332
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 692 bits (1786), Expect = 0.0
Identities = 385/1032 (37%), Positives = 584/1032 (56%), Gaps = 32/1032 (3%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV---DSSPCIDNVL 59
W +DSGC+ HMT E R F + + + + G G I V I NV
Sbjct: 326 WLVDSGCTNHMTKEERYFSNINKSIKVPIRVRNGDIVMTAGKGDITVMTRHGKRIIKNVF 385
Query: 60 LVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQ 119
LV GL NLLS+ Q+ GY V F K C + +G + N + + +KI+LS +E +
Sbjct: 386 LVPGLEKNLLSVPQIISSGYWVRFQDKRC-IIQDANGKEIMNIEMTDKSFKIKLSSVEEE 444
Query: 120 NVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFTK 179
+ + E WH+RLGHVS +++ Q+ LV GLP K + + C+AC K ++
Sbjct: 445 AMTANVQTEE---TWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKET-CKACNLGKQSR 500
Query: 180 VHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESH 239
F ++ T LE++H D+ GP++ +SI G RY ++ +DDY+ WV FL +K E+
Sbjct: 501 KSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETF 560
Query: 240 AVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVE 299
A F F A V+ + C I +R E + GI + P +PQ NG E
Sbjct: 561 ATFKKFKALVEKQSNCSIKTLRP----------MEVFCEDEGINRQVTLPYSPQQNGAAE 610
Query: 300 RKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNK-TRYELWKNIKPNI 358
RKNR+L EMAR+ML E + WAEAV T Y+QNR+ + I + T E W KPN+
Sbjct: 611 RKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNV 670
Query: 359 SYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRF- 417
S+ FG +CYV + K DAK+ +L+GYS+++KG+R + + + +E S V F
Sbjct: 671 SHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQ 730
Query: 418 -DDKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEE-EEPEEEA--GPSDSQSQKKSRI 473
D K D D+ + V+K +SIN + + +E + + ++ A G ++ S S++
Sbjct: 731 EDKKWDWDKQEEVKKTFVMSINDIQESRDQQETSSHDLSQIDDHANNGEGETSSHVLSQV 790
Query: 474 TAAHPKELILGNKD----EPVRTRSAFRPSEETLLSLKG-LMSLIEPKSIDEALQDKDWI 528
+E K + + ++ ++E ++ L++ EP++ DEA DK+W
Sbjct: 791 NDQEERETSESPKKYKSMKEILEKAPRMENDEAAQGIEACLVANEEPQTYDEARGDKEWE 850
Query: 529 LAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQE 588
AM EE+ KN W LV KP+ +VI KW+++ K + G+ V++KARLVA+G+SQ+
Sbjct: 851 EAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEY 910
Query: 589 GIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDE 648
GIDY ETFAPV+R + ++ L++++ L+QMDVKSAFLNG + EEVYV QPPGF E
Sbjct: 911 GIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIE 970
Query: 649 KNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIY 708
+ V +L K+LYGLKQAPRAWYER+ S+ ++N F R D L+ K +D+LIV +Y
Sbjct: 971 GKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSKKKGEDVLIVSLY 1030
Query: 709 VDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELL 768
VDD+I N L F + M+ EFEM+ +G L YF+G++V+Q G ++ Q KY +L+
Sbjct: 1031 VDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLI 1090
Query: 769 KKFNMTELVIAKTPMHPTCILEKEDASGK--VCQKLYRGMIGSLLYLTASRPDILFSVHL 826
KF M E TP+ P + + K YR ++G LLYL ASRPD++++
Sbjct: 1091 DKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSY 1150
Query: 827 CARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTS 886
+R+ S P H KR+LRY+KG++N G+++ +L GY D+D+ G ++KST+
Sbjct: 1151 LSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKSTT 1210
Query: 887 GNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI-LESNIPI 945
G LG + W S +Q T+A STAEAEYI + Q +W++ ED+ + + IPI
Sbjct: 1211 GYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPI 1270
Query: 946 YCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAE 1005
CDN +AI++ +NP+ H R KHIE+KYHF+R+ KG++ L++ + Q AD+ TK L+
Sbjct: 1271 LCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGEDQLADVLTKALSV 1330
Query: 1006 DRFNFILKNLNM 1017
RF + + L +
Sbjct: 1331 SRFEGLRRKLGV 1342
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 638 bits (1646), Expect = 0.0
Identities = 359/1035 (34%), Positives = 561/1035 (53%), Gaps = 68/1035 (6%)
Query: 1 QSWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSS---PCIDN 57
Q W+LDSGCS HM G R F EL + V G + + + G G + ++ I +
Sbjct: 256 QIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISD 315
Query: 58 VLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNN----IYKIRL 113
V V GL +NL S+ QL KG I C + + ++ +S N ++
Sbjct: 316 VYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVK 375
Query: 114 SELEAQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSD-ALCEAC 172
E + +CL + + +WH+R GH++ + + L++ +V+GLP + A+C+ C
Sbjct: 376 KSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDIC 435
Query: 173 QKDKFTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFL 232
K K + ++ +++ L+L+H D+ GP+ S GKRY + +DD+SR W L
Sbjct: 436 LKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLL 495
Query: 233 SRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTP 292
S K E+ F F A+V+ E ++V +RSD GGE+ + +F+ +GI ++ TP
Sbjct: 496 SEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTP 555
Query: 293 Q*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWK 352
Q NGV ERKNR++ M R ML E + + FW EAV YI NR + + + T E W
Sbjct: 556 QQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWS 615
Query: 353 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEES 412
+ KP++ + FG + Y L + K D KS KC++ G S SK +R Y+ I S
Sbjct: 616 SWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILIS 675
Query: 413 IHVRFDDKLDSD-QSKLVEKFADLSINVSDKGKAPEEA--------EPEEEEPEEEAGPS 463
V+FD++ + + K +E+ +L + SD A EE + +EE EEE +
Sbjct: 676 RDVQFDEERGWEWEDKSLEE--ELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVA 733
Query: 464 DSQSQK---------KSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIE 514
++ Q + R K+ ++GN + + E+ +L+L + +
Sbjct: 734 ETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVLIT-----QDEEDEVLAL--FIGPDD 786
Query: 515 PKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVR 574
P +EA Q + W AME E+ +N+ W LV+ P+ VIG KW+F+ K NEKG+V +
Sbjct: 787 PVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDK 846
Query: 575 NKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYIS 634
KARLVA+GY Q+ G+D+ E FAPVA+ + ++L++ + + Q+DVKSAFL+G +
Sbjct: 847 FKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLK 906
Query: 635 EEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLF 694
E+V+V QP GF+ E+ V+KLKK+LYGLKQAPRAWY R+ F + F + + TLF
Sbjct: 907 EDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLF 966
Query: 695 CKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPE 754
K + D L+V +YVDD+I+ ++ + + F M EF M+ +G++KYF+G++V Q
Sbjct: 967 VKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDER 1026
Query: 755 GTYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLT 814
G +I+Q KY E++KK+ M K P+ P L K A
Sbjct: 1027 GIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGA-------------------- 1066
Query: 815 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDAD 874
+R+ P E HL AVKRILRY++G+ +LG+ Y++ +L G+ D+D
Sbjct: 1067 ------------VSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSD 1114
Query: 875 YVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLE 934
Y GD +RKSTSG LG ++WASK+Q + LST EAE++ A+ + Q +W+++ LE
Sbjct: 1115 YAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLE 1174
Query: 935 DYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDH 993
+ E ++CDN++ I LSKNP+LH R+KHI V+YHF+R+ V++G + L +
Sbjct: 1175 EIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTD 1234
Query: 994 QWADIFTKPLAEDRF 1008
Q ADI TK + + F
Sbjct: 1235 QVADIMTKAVKREVF 1249
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 634 bits (1636), Expect = 0.0
Identities = 369/1015 (36%), Positives = 527/1015 (51%), Gaps = 106/1015 (10%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV----DSSPCIDNV 58
WYLDSG S HM G + MF EL G V G K ++ G G I + I NV
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNV 394
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 118
+ + N+LS+ QL +KGYD+ + + + KN ++ + + A
Sbjct: 395 YYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIA 454
Query: 119 QNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFT 178
Q +K + EE +WH R GH++ + LS+ +VRGLP + + +CE C
Sbjct: 455 QCLK--MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQ-VCEGCLLGNQF 511
Query: 179 KVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDES 238
K+ F ++ +PLEL+H D+ GP+K +S+G Y ++ +DD+SR TWV FL K E
Sbjct: 512 KMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEV 571
Query: 239 HAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVV 298
+F F A V+ E I +RSD GGEF + +F + GI + PR+PQ NGV
Sbjct: 572 FEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVA 631
Query: 299 ERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNI 358
ERKNRT+ EMAR+ML+ + K WAEAV Y+ NR + + KT E W KP +
Sbjct: 632 ERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGV 691
Query: 359 SYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFD 418
S+ FG + + ++ +K D KS K + +GY + SKG++ YN D K S ++ FD
Sbjct: 692 SHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFD 751
Query: 419 DKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAAHP 478
++ + D + E + DK + E P EE P+ SQ ++ S
Sbjct: 752 EEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESS------- 804
Query: 479 KELILGNKDEPVRTRSAFRPSEETL----LSLKGLMSLIEPKSIDEALQDKDWILAMEEE 534
+ R RS E T L+L L + EP EA++ K W AM+EE
Sbjct: 805 -------SERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEE 857
Query: 535 LNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTE 594
+ KND W L P IG KWV++ K N KG+V R KARLVA+GYSQ+ GIDY E
Sbjct: 858 IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDE 917
Query: 595 TFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHV 654
FAPVARLE V+L+IS + + +HQMDVKSAFLNG + EEVY+ QP G+ + D V
Sbjct: 918 IFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977
Query: 655 FKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIF 714
+LKK LYGLKQAPRAW R+ + E +F++ + L+ K K+DILI +YVDD+IF
Sbjct: 978 LRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIF 1037
Query: 715 GSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMT 774
N + +EF + M EFEM+ +G + Y++GI+V Q G +I Q Y KE+LKKF M
Sbjct: 1038 TGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMD 1097
Query: 775 ELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDP 834
+ +P+ ++GSL YLT +RPDIL++V + +R+ P
Sbjct: 1098 D-------SNPS-------------------LVGSLRYLTCTRPDILYAVGVVSRYMEHP 1131
Query: 835 RETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGS 894
TH A KRILRY+KG+ N GL Y T +DY
Sbjct: 1132 TTTHFKAAKRILRYIKGTVNFGLHYSTT----------SDY------------------- 1162
Query: 895 NLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAI 953
+C +W+++ L++ + E I+ DN +AI
Sbjct: 1163 -----------------------KLVVCHA--IWLRNLLKELSLPQEEPTKIFVDNKSAI 1197
Query: 954 SLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRF 1008
+L+KNP+ H R+KHI+ +YH+IR+ V K + L++V Q ADIFTKPL + F
Sbjct: 1198 ALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDF 1252
>At3g25450 hypothetical protein
Length = 1343
Score = 625 bits (1612), Expect = e-179
Identities = 371/1036 (35%), Positives = 570/1036 (54%), Gaps = 41/1036 (3%)
Query: 2 SWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSS----PCIDN 57
+WYLD+G S HMTG R F +L GKV FG + I G G+I S + +
Sbjct: 291 AWYLDNGASNHMTGNRAWFCKLDEMITGKVRFGDDSCINIKGKGSIPFISKGGERKILFD 350
Query: 58 VLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKR-KNNIYKIRLSEL 116
V + L N+LS+ Q + G D+ + + +G++L ++R +N +YK+ L
Sbjct: 351 VYYIPDLKSNILSLGQATESGCDIRMREDYL-TLHDREGNLLIKAQRSRNRLYKV---SL 406
Query: 117 EAQNVKCL-LSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKD 175
E +N KCL L+ E +WH RLGH+S I + K LV G+ + C +C
Sbjct: 407 EVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSSVPQEKETCGSCLFG 466
Query: 176 KFTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRK 235
K + F ++ LEL+H DL GP+ + KRY V++DD+SR+ W L K
Sbjct: 467 KQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSILLKEK 526
Query: 236 DESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*N 295
E+ F F A V+ E I R+D GGEF + +F+ GI ++P TPQ N
Sbjct: 527 SEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQN 586
Query: 296 GVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIK 355
GVVER+NRTL M R++L+ M Y W EAV Y+ NR+ R + N+T YE++K+ K
Sbjct: 587 GVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHKK 646
Query: 356 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHV 415
PN+ + FGCV Y L K D +S + LG SK +R + + I S V
Sbjct: 647 PNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSRDV 706
Query: 416 RFD--------------DKLDSDQSKLVEKFADLSINVSDKGKAPEEAEP-----EEEEP 456
FD DK + + +F + + +D PEE E E+E
Sbjct: 707 VFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDISTEPEETEEAEINGEDENI 766
Query: 457 EEEAGPSD-SQSQKKSRITAAHPKELILGN--KDEPVRTRSAFRPSEETLLSLKGLMSLI 513
EEA + QSQ++ + +++I N KD + A +E LL++
Sbjct: 767 IEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVL---CAEIEAEHLLLAVND----- 818
Query: 514 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 573
EP EA + K+W A +EE+ KN WSLV P IG KWVF+ K N G +
Sbjct: 819 EPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHNSDGSIN 878
Query: 574 RNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYI 633
+ KARLVA+GY Q+ G+D+ E FAPVAR+E V+L+I+ + ++ +H +DVK+AFL+G +
Sbjct: 879 KYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGEL 938
Query: 634 SEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTL 693
E+VYV QP GF ++++ + V+KL K+LYGL+QAPRAW +L+ L E +F + + +L
Sbjct: 939 REDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSL 998
Query: 694 FCKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTP 753
+ K ++IL+V +YVDD++ +N + F + M +FEMS +G+L Y++GI+V Q+
Sbjct: 999 YRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSK 1058
Query: 754 EGTYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYL 813
+G + Q +Y K++L++ M++ TPM + L K ++ + YR IG L YL
Sbjct: 1059 DGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYL 1118
Query: 814 TASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDA 873
+RPD+ ++V + +R+ +PRE+H A+K+ILRYL+G+T+ GL +KK L GY D+
Sbjct: 1119 LHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYSDS 1178
Query: 874 DYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQL 933
+ D + KST G+ +L ++W S++Q + LS+ EAE++ A + Q +W++ L
Sbjct: 1179 SHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELL 1238
Query: 934 EDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDID 992
+ E + I DN +AI+L+KNP+ H R+KHI +YHFIR+ V+ G + ++ V
Sbjct: 1239 AEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVPGV 1298
Query: 993 HQWADIFTKPLAEDRF 1008
Q ADI TK L + +F
Sbjct: 1299 RQKADILTKALGKIKF 1314
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 613 bits (1581), Expect = e-175
Identities = 356/1031 (34%), Positives = 558/1031 (53%), Gaps = 33/1031 (3%)
Query: 2 SWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSPCIDNVLLV 61
+W +DSG + H++ +R++FQ L V +I G GT+ ++ + NVL +
Sbjct: 441 TWVIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINKDIILQNVLFI 500
Query: 62 DGLTHNLLSISQLA-DKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQN 120
NL+SIS L D G VIF+ C+ G L KR N+Y + ++ A +
Sbjct: 501 PEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLD-TQSPAIS 559
Query: 121 VKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFTKV 180
V ++ V+ VWH+RLGH S ++ LS+ V G K A C C K K+
Sbjct: 560 VNAVVDVS----VWHKRLGHPSFSRLDSLSE---VLGTTRHKNKKSAYCHVCHLAKQKKL 612
Query: 181 HFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHA 240
F + N + S ELLHID++GP E++ G +Y + IVDD+SR TW+ L K +
Sbjct: 613 SFPSANNICNST-FELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLT 671
Query: 241 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVER 300
VF FI V+N+ R+ VRSD+ E F + + GI S P TP+ N VVER
Sbjct: 672 VFPAFIDLVENQYDTRVKSVRSDNAKELA---FTEFYKAKGIVSFHSCPETPEQNSVVER 728
Query: 301 KNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNISY 360
K++ + +AR ++ ++ M+ +W + V T ++ NR + NKT +E+ P+ S
Sbjct: 729 KHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQ 788
Query: 361 FHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 420
FGC+CY + + HKF +S C+ LGY KG++ + ++ + S +V F ++
Sbjct: 789 LKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEE 848
Query: 421 L----DSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAA 476
L S QS ++ G + P + PS S+++ A
Sbjct: 849 LFPLASSQQSATTASDVFTPMDPLSSGNSITS-----HLPSPQISPSTQISKRRITKFPA 903
Query: 477 HPKEL--ILGNKDE--PVRTRSAFRP-SEETLLSLKGLMSLIEPKSIDEALQDKDWILAM 531
H ++ NKD+ P+ + ++ S +L + + + P+S EA K+W A+
Sbjct: 904 HLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAKDSKEWCGAI 963
Query: 532 EEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGID 591
++E+ + D W + P +G KWVF K + G + R KAR+VA+GY+Q+EG+D
Sbjct: 964 DQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLD 1023
Query: 592 YTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKN- 650
YTETF+PVA++ VKLL+ S + L+Q+D+ +AFLNG + E +Y+ P G+ D K
Sbjct: 1024 YTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGT 1083
Query: 651 ---PDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQI 707
P+ V +LKKS+YGLKQA R W+ + S+ LL F + D TLF + + +++ +
Sbjct: 1084 SLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLV 1143
Query: 708 YVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKEL 767
YVDDI+ S + + +E ++A F++ +G LKYF+G++V +T EG + Q KY EL
Sbjct: 1144 YVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALEL 1203
Query: 768 LKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLC 827
L +M + + PM P L K D +++YR ++G L+YLT +RPDI F+V+
Sbjct: 1204 LTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKL 1263
Query: 828 ARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSG 887
+F S PR HL AV ++L+Y+KG+ GL Y + L GY DAD+ R+ST+G
Sbjct: 1264 CQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTG 1323
Query: 888 NC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILESNIPI-Y 946
F+GS+L+SW SK+Q T++ S+AEAEY A+ S +M W+ L ++ S +PI Y
Sbjct: 1324 FTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRV-HSGVPILY 1382
Query: 947 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAED 1006
D+TAA+ ++ NP+ H R KHIE+ H +R+ + G L L V Q ADI TKPL
Sbjct: 1383 SDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLFPY 1442
Query: 1007 RFNFILKNLNM 1017
+F +L +++
Sbjct: 1443 QFAHLLSKMSI 1453
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 599 bits (1545), Expect = e-171
Identities = 344/1030 (33%), Positives = 548/1030 (52%), Gaps = 27/1030 (2%)
Query: 2 SWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSPCIDNVLLV 61
+W +DSG + H++ +R +F L V KI G GT+ ++ + NVL +
Sbjct: 430 TWVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDDILLKNVLFI 489
Query: 62 DGLTHNLLSISQLADK-GYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQN 120
NL+SIS L D G VIF++ SC I G +L +R N+Y + + + ++ +
Sbjct: 490 PEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGD-QSIS 548
Query: 121 VKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFTKV 180
V ++ ++ +WHRRLGH S++++ +S G K C C K K+
Sbjct: 549 VNAVVDIS----MWHRRLGHASLQRLDAISDS---LGTTRHKNKGSDFCHVCHLAKQRKL 601
Query: 181 HFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHA 240
F N V +LLHID++GP E++ G +Y + IVDD+SR TW+ L K E
Sbjct: 602 SFPTSNKVC-KEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLT 660
Query: 241 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVER 300
VF FI QV+N+ ++ VRSD+ E KF S + GI S P TP+ N VVER
Sbjct: 661 VFPAFIQQVENQYKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQNSVVER 717
Query: 301 KNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNISY 360
K++ + +AR ++ ++ + W + V T ++ NR + ++NKT YE+ P
Sbjct: 718 KHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQ 777
Query: 361 FHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 420
FGC+CY + + HKF +S CL LGY KG++ + ++ T+ S +V+F ++
Sbjct: 778 LRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEE 837
Query: 421 L--------DSDQSKLVEKFADLSINV-SDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKS 471
+ KL +S + SD +P + + + S + +
Sbjct: 838 VFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQIS-SQRVRKPPA 896
Query: 472 RITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIEPKSIDEALQDKDWILAM 531
+ H + +K T S + S + + + + P + EA K+W A+
Sbjct: 897 HLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQDTKEWCEAV 956
Query: 532 EEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGID 591
+ E+ K + W + P+ +G KWVF K G++ R KARLVA+GY+Q+EG+D
Sbjct: 957 DAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLD 1016
Query: 592 YTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKN- 650
YT+TF+PVA++ +KLL+ S + L Q+DV +AFLNG + EE+++ P G+ + K
Sbjct: 1017 YTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGI 1076
Query: 651 ---PDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQI 707
+ V +LK+S+YGLKQA R W+++ SS LL F + D TLF K Y + +IV +
Sbjct: 1077 VLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLV 1136
Query: 708 YVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKEL 767
YVDDI+ S ++ + +E + F++ +G+LKYF+G++V +T G I Q KY EL
Sbjct: 1137 YVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALEL 1196
Query: 768 LKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLC 827
L+ M PM P + K+D + YR ++G L+YLT +RPDI F+V+
Sbjct: 1197 LQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKL 1256
Query: 828 ARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSG 887
+F S PR THLTA R+L+Y+KG+ GL Y +S+ L G+ D+D+ + R+ST+
Sbjct: 1257 CQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTS 1316
Query: 888 NC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYC 947
F+G +L+SW SK+Q T++ S+AEAEY A+ + +M+W+ L Q +Y
Sbjct: 1317 FTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPILYS 1376
Query: 948 DNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDR 1007
D+TAAI ++ NP+ H R KHI++ H +R+ + G L L V + Q ADI TKPL +
Sbjct: 1377 DSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQ 1436
Query: 1008 FNFILKNLNM 1017
F + +++
Sbjct: 1437 FEHLKSKMSI 1446
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 568 bits (1465), Expect = e-162
Identities = 345/1025 (33%), Positives = 539/1025 (51%), Gaps = 46/1025 (4%)
Query: 2 SWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSS----PCIDN 57
SWYLD+G S HMTG + F +L GKV FG + + I G G+I + + + +
Sbjct: 279 SWYLDNGASNHMTGNLQWFSKLNEMITGKVRFGDDSRIDIKGKGSIVLITKGGIRKTLTD 338
Query: 58 VLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKR-KNNIYKIRLSEL 116
V + L N++S+ Q + G DV + +G +L + R +N +YK+ +L
Sbjct: 339 VYFIPDLKSNIISLGQATEAGCDVRMKDDQL-TLHDREGCLLLRATRSRNRLYKV---DL 394
Query: 117 EAQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDK 176
+NVKCL + + + + LV G+ + + C +C K
Sbjct: 395 NVENVKCL------------------QLEAATMVRKELVIGISNIPKEKET-CGSCLLGK 435
Query: 177 FTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKD 236
+ F S+ LEL+H DL GP+ + KRY +V++DD++R+ W L K
Sbjct: 436 QARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLKEKS 495
Query: 237 ESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NG 296
E+ F F +V+ E +I R+D GGEF + +F+ GI ++P TPQ NG
Sbjct: 496 EAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTAPYTPQQNG 555
Query: 297 VVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKP 356
VVER+NRTL M R++L+ M Y W EAV YI NR+ R + N+T YE++K KP
Sbjct: 556 VVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEVFKQRKP 615
Query: 357 NISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYN-TDAKTIEESIHV 415
N+ + FGC+ Y L K D +S + LG SK +R + T+ K I+ +
Sbjct: 616 NVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKIIKWNNSD 675
Query: 416 RFDDKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITA 475
+ S + +F + I SD + + E E E EE G ++ Q++
Sbjct: 676 SETRDISGTFSLTLGEFGNNGIQESDDIETEKNGE-ESENSHEEEGENEHNEQEQIDAEE 734
Query: 476 AHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIEPKSIDEALQD----------- 524
P P RS + + L LM+ IE + + A+ D
Sbjct: 735 TQPSHAT----PLPTLRRSTRQVGKPNYLDDYVLMAEIEGEQVLLAINDEPWDFKEANKL 790
Query: 525 KDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGY 584
K+W A +EE+ KN WSL+ P VIG KWVF+ K N G + + KARLVA+GY
Sbjct: 791 KEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSINKYKARLVAKGY 850
Query: 585 SQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPG 644
Q+ GIDY E FA VAR+E ++++I+ + ++ +H +DVK+AFL+G + E+VYV QP G
Sbjct: 851 VQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELREDVYVTQPEG 910
Query: 645 FKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILI 704
F ++ N V+KL K+LYGLKQAPRAW +L+ L E FV+ + +++ + + +LI
Sbjct: 911 FTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYRRQEEKKLLI 970
Query: 705 VQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYT 764
V IYVDD++ ++ L F + M +FEMS +G+L Y++GI+V G + Q +Y
Sbjct: 971 VAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNGIILRQERYA 1030
Query: 765 KELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSV 824
+++++ M+ PM L K + ++ YR MIG L Y+ +RPD+ + V
Sbjct: 1031 MKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIGCLRYIVHTRPDLSYCV 1090
Query: 825 HLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKS 884
+ +R+ PRE+H A+K++LRYLKG+ + GL K+ + L GY D+ + D + KS
Sbjct: 1091 GVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDSSHSADLDDGKS 1150
Query: 885 TSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQL-EDYQILESNI 943
T+G+ +L ++W S++Q +ALS+ EAE++ A + Q +W++ E +
Sbjct: 1151 TAGHIFYLHQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVCGTTSEKV 1210
Query: 944 PIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPL 1003
I DN +AI+L+KN + H R+KHI +YHFIR+ V+ ++ + V Q ADI TKPL
Sbjct: 1211 MIRVDNKSAIALTKNLVFHGRSKHIHRRYHFIRECVENNLVEVDHVPGVEQRADILTKPL 1270
Query: 1004 AEDRF 1008
+F
Sbjct: 1271 GRIKF 1275
>At1g70010 hypothetical protein
Length = 1315
Score = 566 bits (1459), Expect = e-161
Identities = 340/1002 (33%), Positives = 526/1002 (51%), Gaps = 35/1002 (3%)
Query: 44 TGTICVDSSPCIDNVLLVDGLTHNLLSISQLADK-GYDVIFNQKSCRAVSQIDGSVLFNS 102
+G++ + +++VL + NLLS+S L G + F++ SC ++
Sbjct: 314 SGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMG 373
Query: 103 KRKNNIYKIRLSELEAQNVKCLLSVNE--EQ*VWHRRLGHVSMRKISQLSKLNLVRGLPT 160
K+ N+Y + L L ++V +WH+RLGH S++K+ +S L P
Sbjct: 374 KQVANLYIVDLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSL---LSFPK 430
Query: 161 LKFSSDALCEACQKDKFTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIV 220
K ++D C C K + F + N S SRP +L+HID +GP ++ G RY + IV
Sbjct: 431 QKNNTDFHCRVCHISKQKHLPFVSHNNKS-SRPFDLIHIDTWGPFSVQTHDGYRYFLTIV 489
Query: 221 DDYSRWTWVKFLSRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSY 280
DDYSR TWV L K + V TF+ V+N+ I VRSD+ E F + S
Sbjct: 490 DDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FTQFYHSK 546
Query: 281 GIAHDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVR 340
GI S P TPQ N VVERK++ + +AR++ ++ + +W + + T Y+ NR+
Sbjct: 547 GIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAP 606
Query: 341 PILNKTRYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFR 400
+ +K +E+ P + FGC+CY + HKF ++ C +GY KG++
Sbjct: 607 ILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYK 666
Query: 401 FYNTDAKTIEESIHVRFDDKL----DSDQSKLVEKF-ADLS------------INVSDKG 443
+ + +I S HV F ++L SD S+ + F DL+ +N SD
Sbjct: 667 LLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSS 726
Query: 444 KAPE---EAEPEEEEPEEEAGPSDSQSQKKSRITAAHPKELILGNKDEPVRTRSAFRPSE 500
+ E A P PE S +++K + + + ++ E + S R ++
Sbjct: 727 SSVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRIND 786
Query: 501 ETLLSLKGLMSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKW 560
L L L EP + EA + + W AM E + W + P IG +W
Sbjct: 787 PYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRW 846
Query: 561 VFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILH 620
+F+ K N G V R KARLVAQGY+Q+EGIDY ETF+PVA+L +VKLL+ + + L
Sbjct: 847 IFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLT 906
Query: 621 QMDVKSAFLNGYISEEVYVHQPPGFK----DEKNPDHVFKLKKSLYGLKQAPRAWYERLS 676
Q+D+ +AFLNG + EE+Y+ P G+ D P+ V +LKKSLYGLKQA R WY + S
Sbjct: 907 QLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFS 966
Query: 677 SFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMS 736
S LL F++ D T F K L V +Y+DDII S N M++ F++
Sbjct: 967 STLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLR 1026
Query: 737 MMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASG 796
+GELKYF+G+++ ++ +G +I Q KY +LL + + PM P+ + +
Sbjct: 1027 DLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGD 1086
Query: 797 KVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLG 856
V YR +IG L+YL +RPDI F+V+ A+F PR+ HL AV +IL+Y+KG+ G
Sbjct: 1087 FVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQG 1146
Query: 857 LMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEY 916
L Y TSE +L Y +ADY R R+STSG C FLG +L+ W S++Q ++ S+AEAEY
Sbjct: 1147 LFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEY 1206
Query: 917 IPAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 975
++ + +++W+ + L++ Q+ L ++CDN AAI ++ N + H R KHIE H +
Sbjct: 1207 RSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSV 1266
Query: 976 RDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFILKNLNM 1017
R+ + KG+ L ++ + Q AD FTKPL F+ ++ + +
Sbjct: 1267 RERLLKGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 559 bits (1440), Expect = e-159
Identities = 336/1045 (32%), Positives = 543/1045 (51%), Gaps = 49/1045 (4%)
Query: 1 QSWYLDSGCSRHMTGERRMFQEL-KLKPEGKVGFGGNEKGKIVGTGTICVDSSPC---ID 56
+ W+ DS + H+T Q + + + V G I TG+ + SS ++
Sbjct: 320 KEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLN 379
Query: 57 NVLLVDGLTHNLLSISQLADK-GYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSE 115
VL+V + +LLS+S+L D V F+ + V+ R+N +Y + E
Sbjct: 380 EVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVLENQE 439
Query: 116 LEAQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKD 175
A + EE VWH RLGH + + + L ++ K + +CE CQ
Sbjct: 440 FVALYSNRQCAATEE--VWHHRLGHANSKALQHLQNSKAIQ---INKSRTSPVCEPCQMG 494
Query: 176 KFTKVHFKAKNVVSTSR---PLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFL 232
K +++ F ++S SR PL+ +H DL+GP S G +Y + VDDYSR++W L
Sbjct: 495 KSSRLPF----LISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPL 550
Query: 233 SRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTP 292
K E +VF +F V+N+ +I +SD GGEF ++K ++ +GI H S P TP
Sbjct: 551 HNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTP 610
Query: 293 Q*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWK 352
Q NG+ ERK+R L E+ +ML + + FW E+ T YI NR+ + N + YE
Sbjct: 611 QQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALF 670
Query: 353 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEES 412
KP+ S FG CY +KFD +S +C+ LGY+ + KG+R + + S
Sbjct: 671 GEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYIS 730
Query: 413 IHVRFDDK---LDSDQSKLVEKFADLSINVSDKGKAPEEAEP------------------ 451
+V F++ LV +++ + K E + P
Sbjct: 731 RNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKPIDLNTYAG 790
Query: 452 -------EEEEPEEEAGPSDSQSQKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLL 504
+ EP SD + + AA+ +E ++ + R+++ +
Sbjct: 791 SQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAAN-QEQVINSHAMTTRSKAGIQKPNTRYA 849
Query: 505 SLKGLMSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRN 564
+ M+ EPK++ A++ W A+ EE+N+ WSLV ++++ +KWVF+
Sbjct: 850 LITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKT 909
Query: 565 KLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDV 624
KL+ G + + KARLVA+G+ Q+EG+DY ETF+PV R ++L++ S + + Q+DV
Sbjct: 910 KLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDV 969
Query: 625 KSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEF 684
+AFL+G + E V+++QP GF D + P HV +L K++YGLKQAPRAW++ S+FLL+ F
Sbjct: 970 SNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGF 1029
Query: 685 VRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYF 744
V K D +LF IL + +YVDDI+ ++Q L ++ + ++ F M +G +YF
Sbjct: 1030 VCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYF 1089
Query: 745 MGIQVDQTPEGTYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYR 804
+GIQ++ G ++HQ+ Y ++L++ M++ TP+ L+ ++ +R
Sbjct: 1090 LGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQQ--LDNLNSELFAEPTYFR 1147
Query: 805 GMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSE 864
+ G L YLT +RPDI F+V+ + P + +KRILRY+KG+ +GL K+ S
Sbjct: 1148 SLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNST 1207
Query: 865 YKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICST 924
LS Y D+D+ G + R+ST+G C LGSNL+SW++KRQ T++ S+ EAEY +
Sbjct: 1208 LTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAR 1267
Query: 925 QMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGV 983
++ W+ L D I + +YCDN +A+ LS NP LH+R+KH + YH+IR+ V G+
Sbjct: 1268 EITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGL 1327
Query: 984 LLLKFVDIDHQWADIFTKPLAEDRF 1008
+ + + Q AD+FTK L F
Sbjct: 1328 IETQHISATFQLADVFTKSLPRRAF 1352
>At1g37110
Length = 1356
Score = 533 bits (1372), Expect = e-151
Identities = 341/1068 (31%), Positives = 546/1068 (50%), Gaps = 76/1068 (7%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSS----PCIDNV 58
W LDSGC+ HMT R F + K + G + + G GTI +D+ ++NV
Sbjct: 308 WILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENV 367
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIR----LS 114
V L NL+S L GY + R + N +Y + +S
Sbjct: 368 KYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFK--NNKTALRGSLSNGLYVLDGSTVMS 425
Query: 115 EL---EAQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLV--RGLPTLKFSSDALC 169
EL E VK L WH RLGH+SM + L+ L+ + + L+F C
Sbjct: 426 ELCNAETDKVKTAL--------WHSRLGHMSMNNLKVLAGKGLIDRKEINELEF-----C 472
Query: 170 EACQKDKFTKVHFKAKNVVSTSRPLELLHIDLFG-PVKTESIGGKRYGMVIVDDYSRWTW 228
E C K KV F S L +H DL+G P T SI GK+Y + I+DD +R W
Sbjct: 473 EHCVMGKSKKVSFNVGKHTSEDA-LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVW 531
Query: 229 VKFLSRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSS 288
+ FL KDE+ F + + V+N+ ++ +R+D+G EF N +F+S +GI +
Sbjct: 532 LYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTC 591
Query: 289 PRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRY 348
TPQ NGV ER NRT+ E R +L ++G+ + FWAEA T Y+ NR I +
Sbjct: 592 TYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPE 651
Query: 349 ELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKT 408
E+W N KP + FG + YV + +L ++ K LGY +KG++ + + +
Sbjct: 652 EMWLNRKPGYKHLRKFGSIAYVHQDQGKLKP---RALKGFFLGYPAGTKGYKVWLLEEEK 708
Query: 409 IEESIHVRFDDKL----------DSDQSKLVE---------KFADLSIN------VSDKG 443
S +V F + + D+D E KFA+ S + SD
Sbjct: 709 CVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSE 768
Query: 444 KAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAAH-PKELILGNKDEPVRTRSAFRPSEET 502
E + + E E E ++ K++ +T ++ + N + P R F
Sbjct: 769 PITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTR----FTEESSV 824
Query: 503 LLSLKGLMSLI--EPKSIDEALQDKD---WILAMEEELNQFSKNDVWSLVKKPQSVHVIG 557
+L + + I EP+S EA++ +D W +A +E++ KN W LV KP+ +IG
Sbjct: 825 TFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIG 884
Query: 558 TKWVFRNKLNEKG-DVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHN 616
+W+F+ K G + R KARLVA+GY+Q+EG+DY E FAPV + ++++L+S V+ +
Sbjct: 885 CRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKD 944
Query: 617 IILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLS 676
+ L QMDVK+ FL+G + EE+Y+ QP GF + + + V +LKKSLYGLKQ+PR W +R
Sbjct: 945 LELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFD 1004
Query: 677 SFLLENEFVRGKVDTTLFCKTYKD-DILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEM 735
F+ +F+R + D ++ K + D + + +YVDD++ A++ E + EFEM
Sbjct: 1005 RFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEM 1064
Query: 736 SMMGELKYFMGIQVDQTPEGTYIHQSK--YTKELLKKFNMTELVIAKTPM---HPTCILE 790
MG +GI + + +G + S+ Y +++L +FNM+ + P+ +
Sbjct: 1065 KDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLAAVR 1124
Query: 791 KEDASGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYL 849
+ED Y +GS++Y + +RPD+ +++ L +R+ S P H AVK ++RYL
Sbjct: 1125 EEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYL 1184
Query: 850 KGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIAL 909
KG+ +L L++ K ++ ++GYCD++Y D R+S SG +G N VSW + Q +A+
Sbjct: 1185 KGAQDLNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAM 1244
Query: 910 STAEAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIE 969
ST EAEYI A + + +W+K L+D + + + I+CD+ +AI LSKN + H R KHI+
Sbjct: 1245 STTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHID 1304
Query: 970 VKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFILKNLNM 1017
V++++IRD V+ G + + + D TK + ++F L L +
Sbjct: 1305 VRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVLKL 1352
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 523 bits (1346), Expect = e-148
Identities = 336/1055 (31%), Positives = 546/1055 (50%), Gaps = 51/1055 (4%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSPC----IDNV 58
W +D+GCS HMT +R F++L G V G K+ G GTI V + + NV
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNV 346
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 118
+ + NLLS+ GY + ++ SVL +R +Y ++ +
Sbjct: 347 RYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIA--GDSVLLTVRRCYTLYLLQWRPVTE 404
Query: 119 QNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFT 178
+++ ++ ++ +WHRRLGH+S + + L K L L K S CE C K
Sbjct: 405 ESLS-VVKRQDDTILWHRRLGHMSQKNMDLLLKKGL---LDKKKVSKLETCEDCIYGKAK 460
Query: 179 KVHFKAKNVVSTSRPLELLHIDLFG-PVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDE 237
++ F T LE +H DL+G P S+G +Y + +DDY+R + FL KDE
Sbjct: 461 RIGFNLAQH-DTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDE 519
Query: 238 SHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGV 297
+ F + V+N+ RI +R+D+G EF N F+ GI + TPQ NGV
Sbjct: 520 AFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGV 579
Query: 298 VERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPN 357
ER NRTL E R+ML ++G+ K FWAEA +T + N+ + + + W P
Sbjct: 580 AERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPI 639
Query: 358 ISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRF 417
SY FGC+ +V +T D K + ++ K +L+GY KG++ + + K S +V F
Sbjct: 640 YSYLRRFGCIAFV-HTDDG--KLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRNVIF 696
Query: 418 DDKL---DSDQSKLVEK---------FADLSIN----VSDKGKAP--EEAEPEEEEPEEE 459
+ D QSK EK + DL ++ ++ G P E P P
Sbjct: 697 QENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPSPATT 756
Query: 460 AGPSDSQSQKKSRITAAHPKELILGNKDEPVRTRSAFRPSE---ETLLSLKGLMSLIEPK 516
S+ + + I + +L+ +R F + E L + + IEP
Sbjct: 757 QTYSEGVNSETDIIQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTED-SGEIEPA 815
Query: 517 SIDEALQDKDWI---LAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKG-DV 572
EA + +W LAM EE+ KN W++VK+PQ VIG++W+++ KL G +
Sbjct: 816 DYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEE 875
Query: 573 VRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGY 632
R KARLVA+GY+Q++GIDY E FAPV + ++++L+S ++ L Q+DVK+AFL+G
Sbjct: 876 GRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFLHGE 935
Query: 633 ISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTT 692
+ E++Y+ P G+++ D V L KSLYGLKQAP+ W E+ ++++ E F+R D+
Sbjct: 936 LKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSC 995
Query: 693 LFCKTYKDDILI-VQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQ 751
+ K D + + +YVDD++ + N+ + E + F+M +G K +G+++ +
Sbjct: 996 AYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIR 1055
Query: 752 TPEGT--YIHQSKYTKELLKKFNMTELVIAKTPMHP-----TCILEKEDASGKVCQKL-Y 803
E ++ Q+ Y ++L+ +NM E TP+ +EK++ + + Y
Sbjct: 1056 NREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYMKSIPY 1115
Query: 804 RGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKT 862
+GS++Y + +RPD+ + V + +R+ S P H VK +LRY+KGS L YK++
Sbjct: 1116 SSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLGTKLQYKRS 1175
Query: 863 SEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAIC 922
S++K+ GYCDAD+ + R+S +G LG + +SW S +Q +ALST EAEY+
Sbjct: 1176 SDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSLTEA 1235
Query: 923 STQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKG 982
+ +WMK L+++ + ++ I+CD+ +AI+LSKN + H R KHI+V+Y +IRD + G
Sbjct: 1236 VKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIANG 1295
Query: 983 VLLLKFVDIDHQWADIFTKPLAEDRFNFILKNLNM 1017
+ +D + ADIFTK + ++F L L +
Sbjct: 1296 DGDVVKIDTEKNPADIFTKIVPVNKFQAALTLLQV 1330
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 516 bits (1328), Expect = e-146
Identities = 338/1060 (31%), Positives = 545/1060 (50%), Gaps = 57/1060 (5%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSP----CIDNV 58
W LD+GCS HMT + F++ K G V G + + G G+I + +S + +V
Sbjct: 285 WVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDV 344
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 118
+ +T NL+S+ L D+G + V S + ++++ +Y + E
Sbjct: 345 RYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGC--STILKGQKRDTLYILDGVTEEG 402
Query: 119 QNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRG--LPTLKFSSDALCEACQKDK 176
++ V +E +WH RLGH+S + + L K +R + L+F CE C K
Sbjct: 403 ESHSSA-EVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEF-----CEDCVYGK 456
Query: 177 FTKVHFKAKNVVSTSRPLELLHIDLFG-PVKTESIGGKRYGMVIVDDYSRWTWVKFLSRK 235
+V F V T L +H DL+G P S+G +Y + VDDYSR W+ FL +K
Sbjct: 457 QHRVSFAPAQHV-TKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKK 515
Query: 236 DESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*N 295
DE+ F + V+N+ ++ ++R+D+G E+ N FE GI + TPQ N
Sbjct: 516 DEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQN 575
Query: 296 GVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIK 355
G+ ER NRT+ + R+ML +GM K FWAEA +T Y+ NR I E W
Sbjct: 576 GIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGAL 635
Query: 356 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHV 415
P++S FGC+ Y+ + +L+ +S K + Y + KG++ + + K S +V
Sbjct: 636 PDLSSLRKFGCLAYIHADQGKLNP---RSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNV 692
Query: 416 RF-------DDKLDSDQSKLVEKFADLSIN-------VSDKGKAPEE-AEPEEEEPEEEA 460
F D K DS + DL +N +D+G A ++ + P E
Sbjct: 693 IFREQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNP 752
Query: 461 ---GPSDSQSQKKSRITAAHPKELILGN--KDEPVRTRSAFRPSEETLLSLKGLMS---- 511
P+ SQ ++ + ++L +D RT A E+ + S
Sbjct: 753 VLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDDG 812
Query: 512 LIEPKSIDEALQDKDWI---LAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNE 568
EPKS EAL D DW AM+EE+ SKN W LV KP+ V +IG +WVF K
Sbjct: 813 KPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGI 872
Query: 569 KG-DVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSA 627
G + R ARLVA+G++Q+EG+DY E F+PV + +++ L+S V++N+ L QMDVK+A
Sbjct: 873 PGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTA 932
Query: 628 FLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRG 687
FL+G++ EE+Y+ QP GF+ ++ + V LK+SLYGLKQ+PR W R F+ ++ R
Sbjct: 933 FLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRS 992
Query: 688 KVDTTLFCKTYKDDILI-VQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMG 746
D+ ++ K D I + +YVDD++ SAN+ E +++ EFEM +G+ K +G
Sbjct: 993 AYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILG 1052
Query: 747 IQVDQTPEGTYI--HQSKYTKELLKKFNMTELVIAKTPMHPTCIL------EKEDASGKV 798
+++ + + + Q Y K++L+ F M TP+ L E E+ ++
Sbjct: 1053 MEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERM 1112
Query: 799 CQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGL 857
Y IGS++Y + +RPD+ +S+ + +RF S P + H AVK +LRY++G+ L
Sbjct: 1113 KIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKL 1172
Query: 858 MYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYI 917
++K ++ L GYCD+DY + R+S +G +G N +SW SK Q +A+S+ EAEY+
Sbjct: 1173 CFRKQEDFLLRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYM 1232
Query: 918 PAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRD 977
+ LW+K + + + ++ D+ +AI+L+KN + H R KHI+++ HFIRD
Sbjct: 1233 ALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHFIRD 1292
Query: 978 YVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFILKNLNM 1017
+ G++ + + + A+IFTK + +F L L +
Sbjct: 1293 IICAGLIKVVKIATECNPANIFTKTVPLAKFEGALNMLRV 1332
>At1g26990 polyprotein, putative
Length = 1436
Score = 514 bits (1323), Expect = e-145
Identities = 324/1035 (31%), Positives = 524/1035 (50%), Gaps = 71/1035 (6%)
Query: 1 QSWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSPCIDNVLL 60
++W +DSG S H+T ER ++ K V KI GTG I + + + NVL
Sbjct: 419 RAWVIDSGASHHVTHERNLYHTYKALDRTFVRLPNGHTVKIEGTGFIQLTDALSLHNVLF 478
Query: 61 VDGLTHNLLSISQLADKGYD-VIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRL------ 113
+ NLLS+S L V F C + +L + N+Y + L
Sbjct: 479 IPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLVD 538
Query: 114 -SELEAQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDAL-CEA 171
S ++V SV E +WH+RLGH S KI LS + + LP K + D+ C
Sbjct: 539 VSSFPGKSV--CSSVKNESEMWHKRLGHPSFAKIDTLSDVLM---LPKQKINKDSSHCHV 593
Query: 172 CQKDKFTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKF 231
C K + FK+ N + + EL+HID +GP ++ RY + IVDD+SR TW+
Sbjct: 594 CHLSKQKHLPFKSVNHIR-EKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYL 652
Query: 232 LSRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRT 291
L +K + VF +F+ V+ + ++ VRSD+ E KF LF GI D P T
Sbjct: 653 LKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHEL---KFNELFAKEGIKADHPCPET 709
Query: 292 PQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELW 351
P+ N VVERK++ L +AR ++ ++G+ +W + V T ++ NR+ I N+T YE
Sbjct: 710 PEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERL 769
Query: 352 KNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEE 411
KP+ S FGC+CY + KFD ++ C+ LGY KG++ + + ++
Sbjct: 770 TKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYSVSI 829
Query: 412 SIHVRF-DDKLDSDQSKLVEKFADLSINV------SDKGKAPEEAEPEEEEPEEEAG--- 461
S HV F +D S + + D ++ +D+ ++ + +E+
Sbjct: 830 SRHVIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDAPHNHDESSSMI 889
Query: 462 --PSDSQSQKKSRITAAHPKELILGNKDEPVRTRSAFRP----------SEETLLSLKGL 509
PS+ +S ++ ++ + H ++ N + P T+++ P SE + +
Sbjct: 890 FVPSEPKSTRQRKLPS-HLQDFHCYN-NTPTTTKTSPYPLTNYISYSYLSEPFGAFINII 947
Query: 510 MSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEK 569
+ P+ EA DK W AM +E++ F + WS+ P +G KW+ K
Sbjct: 948 TATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIITIKFLAD 1007
Query: 570 GDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFL 629
G + R+KARLVA+GY+QQEGID+ TF+PVA++ VK+L+S + LHQ+D+ +A L
Sbjct: 1008 GSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLAPKMKWYLHQLDISNALL 1067
Query: 630 NGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKV 689
NG + EE+Y+ PPG+ + + G + +P A +
Sbjct: 1068 NGDLEEEIYMKLPPGYSE-------------IQGQEVSPNA---------------KCHG 1099
Query: 690 DTTLFCKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQV 749
D TLF K L+V +YVDDI+ S + E + + + F++ +GE K+F+GI++
Sbjct: 1100 DHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEI 1159
Query: 750 DQTPEGTYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGS 809
+ +G + Q KY +LL + ++ + PM P L K+ + K YR ++G
Sbjct: 1160 ARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGK 1219
Query: 810 LLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSG 869
L YL +RPDI F+V A++ S P + HL A+ +ILRYLKG+ GL Y + + L G
Sbjct: 1220 LQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRG 1279
Query: 870 YCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWM 929
+ D+D+ R+ +G F+G++LVSW SK+Q +++S+AEAEY ++ + +++W+
Sbjct: 1280 FSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWL 1339
Query: 930 KHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKF 988
+ L ++I +YCDN AA+ ++ N + H R KHIE H +R+ ++ G+L F
Sbjct: 1340 GYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIF 1399
Query: 989 VDIDHQWADIFTKPL 1003
V D+Q AD TKPL
Sbjct: 1400 VRTDNQLADTLTKPL 1414
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 508 bits (1307), Expect = e-144
Identities = 326/1065 (30%), Positives = 553/1065 (51%), Gaps = 85/1065 (7%)
Query: 2 SWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVD----SSPCIDN 57
+W LD+GCS HMT + + K GKV G + ++ G G + + S+ + +
Sbjct: 311 TWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTD 370
Query: 58 VLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELE 117
V + ++ NL+S+ L DKG ++K + + D +VL K+++ +Y ++ + L
Sbjct: 371 VRYIPEMSKNLISLGTLEDKGC-WFESKKGILTIFKNDLTVL-TGKKESTLYFLQGTTL- 427
Query: 118 AQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQL-SKLNLVRGLPTLKFSSDALCEACQKDK 176
A + +E +WH RLGH+ + + L SK +L DK
Sbjct: 428 AGEANVIDKEKDETSLWHSRLGHIGAKGLQVLVSKGHL--------------------DK 467
Query: 177 FTKVHFKAKNVVSTSRPLELLHIDLFGPVKTE-SIGGKRYGMVIVDDYSRWTWVKFLSRK 235
+ F A V+ + L+ +H DL+G SIG +Y + +DD++R TW+ F+ K
Sbjct: 468 NIMISFGAAKHVTKDK-LDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTK 526
Query: 236 DESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*N 295
DE+ + F + Q++N++ ++ + +D+G EF N +F+S G+ + TPQ N
Sbjct: 527 DEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQN 586
Query: 296 GVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIK 355
GV ER NRT+ R ML E+G+ K FWAEA +T ++ N+ I E W
Sbjct: 587 GVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHP 646
Query: 356 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHV 415
P+ FG V Y+ + + +L+ ++ K + LGY D K F+ + + + S +
Sbjct: 647 PDYKILKKFGSVAYIHSDQGKLNP---RAKKGIFLGYPDGVKRFKVWLLEDRKCVVSRDI 703
Query: 416 RFDDKLDSDQSKLVEKFADLSIN-VSDKGKAPEEAE---------PEEEEPEEEAGPSDS 465
F + + + +L N +S++ K E E ++E + E G + +
Sbjct: 704 VFQEN---------QMYKELQKNDMSEEDKQLTEVERTLIELKNLSADDENQSEGGDNSN 754
Query: 466 QSQKKSRITAAHPKELILGNKDEP---------------VRTRSAFRPSEETLLSLKGLM 510
Q Q + +A+ K++ + D+ +R F +++L+ M
Sbjct: 755 QEQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTM 814
Query: 511 S----LIEPKSIDEALQDKD---WILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFR 563
+ + EP++ +EA++ + W A EE++ KND W ++ KP+ VIG KW+F+
Sbjct: 815 TEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFK 874
Query: 564 NKLNEKG-DVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQM 622
K G + R KARLVA+G+SQ+EGIDY E F+PV + +++ L+S V ++ L Q+
Sbjct: 875 RKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQL 934
Query: 623 DVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN 682
DVK+AFL+G + E + + QP G++DE + + V LKKSLYGLKQ+PR W +R SF++ +
Sbjct: 935 DVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINS 994
Query: 683 EFVRGKVDTTLFCKTYKDDILI-VQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGEL 741
+ R K + ++ + D I + +YVDD++ S N+ ++ E + EFEM +G
Sbjct: 995 GYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPA 1054
Query: 742 KYFMGIQVDQTPEGTYIH--QSKYTKELLKKFNMTELVIAKTPMHPTCIL----EKEDAS 795
+ +G+++ + E + QS+Y +L+ F M + +++TP+ L EK A
Sbjct: 1055 RKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLAR 1114
Query: 796 GKVCQKL--YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGS 852
KL Y IGS++Y + SRPD+ + V + +RF S P + H AVK ++RY+KG+
Sbjct: 1115 DAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGT 1174
Query: 853 TNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTA 912
+ L +KK ++++ GYCD+DY D R+S +G G N +SW S Q +ALST
Sbjct: 1175 QDTCLRFKKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTT 1234
Query: 913 EAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKY 972
EAEY+ A + +W++ + + + + CD+ +AI+LSKN + H R KHI+V+Y
Sbjct: 1235 EAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRY 1294
Query: 973 HFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFILKNLNM 1017
HFIR+ + G + + + ADIFTK + + LK L +
Sbjct: 1295 HFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLLRV 1339
>At4g17450 retrotransposon like protein
Length = 1433
Score = 506 bits (1302), Expect = e-143
Identities = 314/1031 (30%), Positives = 513/1031 (49%), Gaps = 50/1031 (4%)
Query: 1 QSWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSPCIDNVLL 60
+ W +DSG + H+T R ++ + V + KI G G I + + + NVL
Sbjct: 430 RGWVIDSGATHHVTHNRDLYLNFRSLENTFVRLPNDCTVKIAGIGFIQLSDAISLHNVLY 489
Query: 61 VDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQN 120
+ NL+S + + SQ+ + + N+ ++ +
Sbjct: 490 IPEFKFNLIS----------ELTKELMIGRGSQVGNLYVLDFNENNHTVSLKGTTSMCPE 539
Query: 121 VKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDA--LCEACQKDKFT 178
SV + WH+RLGH + KI LS + ++ K S +C C K
Sbjct: 540 FSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQK 599
Query: 179 KVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDES 238
+ F+++ + S +L+HID +GP + TW+ L K +
Sbjct: 600 HLSFQSRQNMC-SAAFDLVHIDTWGPFSVPTNDA--------------TWIYLLKNKSDV 644
Query: 239 HAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVV 298
VF FI V + ++ VRSD+ E KF LF ++GI S P TP+ N VV
Sbjct: 645 LHVFPAFINMVHTQYQTKLKSVRSDNAHEL---KFTDLFAAHGIVAYHSCPETPEQNSVV 701
Query: 299 ERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNI 358
ERK++ + +AR +L ++ + FW + V T ++ NR+ + NK+ YE KNI P
Sbjct: 702 ERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAY 761
Query: 359 SYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFD 418
FGC+CY + + HKF+ ++ C+ LGY KG++ + + + S HV F
Sbjct: 762 ESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFH 821
Query: 419 DKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQS-QKKSRITAAH 477
+ + S ++ ++ D + ++ P E+ D+ Q S A
Sbjct: 822 EDIFPFISSTIKD------DIKDFFPLLQFPARTDDLPLEQTSIIDTHPHQDVSSSKALV 875
Query: 478 PKELILGNKDEPVRTRSAFRPSEETL----LSLKGLMSLIEPKSIDEALQDKDWILAMEE 533
P + + + +P + F T + + + + P+ EA K W AM+E
Sbjct: 876 PFDPLSKRQKKPPKHLQDFHCYNNTTEPFHAFINNITNAVIPQRYSEAKDFKAWCDAMKE 935
Query: 534 ELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYT 593
E+ + + WS+V P + IG KWVF K N G + R KARLVA+GY+Q+EG+DY
Sbjct: 936 EIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYE 995
Query: 594 ETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKD---EKN 650
ETF+PVA+L +V++++ + +HQ+D+ +AFLNG + EE+Y+ PPG+ D E
Sbjct: 996 ETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEAL 1055
Query: 651 PDH-VFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYV 709
P H + +L KS+YGLKQA R WY +LS+ L F + D TLF K ++ V +YV
Sbjct: 1056 PPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYV 1115
Query: 710 DDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLK 769
DDI+ S + +F+ +++ F++ +G KYF+GI++ ++ +G I Q KY ELL
Sbjct: 1116 DDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLS 1175
Query: 770 KFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCAR 829
+ P+ P+ L KED YR ++G L+YL +RPDI ++V+ +
Sbjct: 1176 TTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQ 1235
Query: 830 FQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC 889
F P HL+AV ++LRYLKG+ GL Y ++ L GY D+D+ R+ + C
Sbjct: 1236 FSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYC 1295
Query: 890 *FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILESNIP---IY 946
F+G LVSW SK+Q T+++STAEAE+ + + +M+W+ +D+++ IP +Y
Sbjct: 1296 MFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKV--PFIPPAYLY 1353
Query: 947 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAED 1006
CDNTAA+ + N + H R K +E+ + R+ V+ G L FV+ Q AD TK +
Sbjct: 1354 CDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHPA 1413
Query: 1007 RFNFILKNLNM 1017
+F+ ++ + +
Sbjct: 1414 QFHKLIGKMGV 1424
>At4g03810 putative retrotransposon protein
Length = 964
Score = 477 bits (1228), Expect = e-134
Identities = 312/983 (31%), Positives = 498/983 (49%), Gaps = 68/983 (6%)
Query: 55 IDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNN------- 107
+ N V + N++S+S L +G+ K C S + + S +N
Sbjct: 5 LKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCC---SFDRDDMFYGSAPLDNGLHVLNQ 61
Query: 108 ---IYKIRLSELEAQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFS 164
IY IR + ++ ++ +WH RLGH++ + I +L L L + +
Sbjct: 62 SMPIYNIRTKKFKSNDLNPTF-------LWHCRLGHINEKHIQKLHSDGL---LNSFDYE 111
Query: 165 SDALCEACQKDKFTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYS 224
S CE+C K TK F + S L L+H D+ GP+ T + G +Y + DD+S
Sbjct: 112 SYETCESCLLGKMTKAPFTGHSE-RASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFS 170
Query: 225 RWTWVKFLSRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAH 284
R+ +V + K +S F F +VQN+ I +RSD GGE+ + F GI
Sbjct: 171 RYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVS 230
Query: 285 DFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILN 344
+ P TPQ NGV ER+NRTL +M R+M+ T + FW A+ T ++ NR + +
Sbjct: 231 QLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSV-E 289
Query: 345 KTRYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYN- 403
KT YE+W PN+S+ +GC Y K KS KC +GY +KG+ FY+
Sbjct: 290 KTPYEIWTGKVPNLSFLKIWGCESYAKRLIT--DKLGPKSDKCYFVGYPKETKGYYFYHP 347
Query: 404 TDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPS 463
TD K +V A L KG + + EE + P+
Sbjct: 348 TDNKVF------------------VVRNGAFLEREFLSKGTSGSKVLLEEVREPQGDVPT 389
Query: 464 DSQSQKKSRITAAHPKELILGNKDEPVRTRSAFRPSE--ETLLSLKGLMSLI--EPKSID 519
SQ++ ++ E IL + RS P + ++ L + EP S +
Sbjct: 390 ---SQEEHQLDLRRVVEPILVEPEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYE 446
Query: 520 EALQDKD---WILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNK 576
EAL D W+ A + E+ S+N VW+LV P V I KW+F+ K++ G++ K
Sbjct: 447 EALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYK 506
Query: 577 ARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEE 636
A LVA+GY Q GIDY ET++PVA L+++++L++ + +++ + QMDVK+AFLNG + E
Sbjct: 507 AGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEH 566
Query: 637 VYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCK 696
VY+ QP GF + V KL +S+YGLKQA R+W R + + E +F+R + + ++ K
Sbjct: 567 VYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKK 626
Query: 697 TYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQV--DQTPE 754
T + + +YVDDI+ + L + + + F M MGE Y +GI++ D+ +
Sbjct: 627 TSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNK 686
Query: 755 GTYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEK------EDASGKVCQKLYRGMIG 808
+ Q Y ++L +FNM + PM L K D ++ + Y IG
Sbjct: 687 IIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIG 746
Query: 809 SLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKL 867
S++Y + +RPD+ ++ + +R+QSDP E+H V+ I +YL+ + + L+Y + E +
Sbjct: 747 SIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVV 806
Query: 868 SGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQML 927
SGY DA + D+ + +S SG L VSW S +QST+A ST EAEYI A+ + +++
Sbjct: 807 SGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVV 866
Query: 928 WMKHQLEDYQILES---NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 984
W++ + + ++ S I +YCDN AI+ +K P H ++KHI+ +YH IR+ + +G +
Sbjct: 867 WIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDV 926
Query: 985 LLKFVDIDHQWADIFTKPLAEDR 1007
+ V D AD FTKPL + +
Sbjct: 927 KISRVSTDANVADHFTKPLPQPK 949
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,082,771
Number of Sequences: 26719
Number of extensions: 1020588
Number of successful extensions: 4546
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3680
Number of HSP's gapped (non-prelim): 376
length of query: 1019
length of database: 11,318,596
effective HSP length: 109
effective length of query: 910
effective length of database: 8,406,225
effective search space: 7649664750
effective search space used: 7649664750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0086.17