BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0083.15
         (489 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g15410 putative retroelement pol polyprotein                       337  1e-92
At1g20390 hypothetical protein                                        321  7e-88
At2g15100 putative retroelement pol polyprotein                       300  1e-81
At2g14400 putative retroelement pol polyprotein                       254  1e-67
At2g13230 pseudogene                                                  216  2e-56
At2g06320 putative retroelement pol polyprotein                       194  7e-50
At1g37060 Athila retroelment ORF 1, putative                          179  4e-45
At2g13060 pseudogene                                                  174  1e-43
At2g11940 putative retroelement gag/pol polyprotein                   172  3e-43
At1g36830 hypothetical protein                                        171  8e-43
At3g31530 hypothetical protein                                        165  6e-41
At1g37200 hypothetical protein                                        133  3e-31
At2g07660 putative retroelement pol polyprotein                       114  9e-26
At2g10780 pseudogene                                                  112  5e-25
At4g07610                                                             105  6e-23
At4g07850 putative polyprotein                                        100  2e-21
At4g04060 putative transposon protein                                  97  2e-20
At2g07410 putative retroelement pol polyprotein                        97  2e-20
At2g12040 T10J7.2                                                      96  3e-20
At3g31970 hypothetical protein                                         96  4e-20

>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  337 bits (863), Expect = 1e-92
 Identities = 175/399 (43%), Positives = 244/399 (60%), Gaps = 3/399 (0%)

Query: 93   LPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLG 152
            +P++K  A++L  R++ YT+ ++ L +   +  LL CL  + A  V+ EIHEG+ G+H G
Sbjct: 1389 VPKDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEEAQQVMREIHEGAGGNHSG 1448

Query: 153  GRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGM 212
            GR+LA K+ + G YWPT+  D    V +C+ CQ HA   H P   L + + P+PF +W M
Sbjct: 1449 GRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIPSEVLQTAMPPYPFMRWAM 1508

Query: 213  DLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLIT 272
            D++ PF  +    KY++V  DY+TKW EAE  A I S  VQ F +KN+I   G+P  ++T
Sbjct: 1509 DIIRPFPASRQ-KKYILVMTDYFTKWFEAESYARIQSKEVQNFVWKNIICHHGLPYEIVT 1567

Query: 273  DNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAE 332
            DNGTQFTS  F        I+   ++  +PQ NGQAE+ N+ IL GL+KRL + KG WA+
Sbjct: 1568 DNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRLDEKKGAWAD 1627

Query: 333  QLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGF--DLNQNDQLLGED 390
            +LD VLW+YRTTP  +T  +P+ LT+G EA+ P E   P+ R +    D   NDQ+L ++
Sbjct: 1628 ELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDN 1687

Query: 391  LDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAK 450
            LD L E+R  A  R    +Q AA  YNKKV  R FA GDLVL+         + GKL A 
Sbjct: 1688 LDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAH 1747

Query: 451  WEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
            WEGPY + +    G Y+L T+ G  IPR+WN+ NL+RYY
Sbjct: 1748 WEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKRYY 1786


>At1g20390 hypothetical protein
          Length = 1791

 Score =  321 bits (822), Expect = 7e-88
 Identities = 167/401 (41%), Positives = 241/401 (59%), Gaps = 3/401 (0%)

Query: 91   GWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHH 150
            G LP +K  A++L  +A+ YT++ + L K      +L CL       ++ E HEG+ G+H
Sbjct: 1391 GTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNH 1450

Query: 151  LGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQW 210
             GGR+LA K+ + G+YWPT+  D      +C+ CQRHA   H P   L + V+P+PF +W
Sbjct: 1451 SGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRW 1510

Query: 211  GMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVL 270
             MD++GP   +    ++++V  DY+TKW+EAE  ATI +  VQ F +K +I R G+P  +
Sbjct: 1511 AMDIVGPMPASRQ-KRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEI 1569

Query: 271  ITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDW 330
            ITDNG+QF S  F +      I+   ++  +PQ NGQAE+ N+ IL GL+KRL + KG W
Sbjct: 1570 ITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAW 1629

Query: 331  AEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQ--NDQLLG 388
            A++LD VLW+YRTTP S T ++P+   +G EA+ PAE+   S R +    N   ND+++ 
Sbjct: 1630 ADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELNDRMML 1689

Query: 389  EDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLA 448
            + LD L E R  A CR    +  AA  YN+KV  R F  GDLVL+           GKL 
Sbjct: 1690 DRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLG 1749

Query: 449  AKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
            A WEG Y+V +    G Y+L T++G  +PRTWN+ +L+RYY
Sbjct: 1750 ANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  300 bits (768), Expect = 1e-81
 Identities = 157/403 (38%), Positives = 232/403 (56%), Gaps = 16/403 (3%)

Query: 89   LSGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCG 148
            L+G LP EK  A+KL    + + I ND L++R FS P   C+  ++   V+ E+H+G+CG
Sbjct: 940  LNGTLPAEKWAARKLKATCARFCIANDILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCG 999

Query: 149  HHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFH 208
            +H GGRSLA KV + GYYWPTL  D   + ++C+ CQ+HA L   P   L+++ +P+PF 
Sbjct: 1000 NHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFM 1059

Query: 209  QWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPG 268
            +W MD++GP   +              T+ +EA   + IT  +V  F +K++I R G+P 
Sbjct: 1060 KWLMDIVGPLHVS--------------TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPY 1105

Query: 269  VLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKG 328
             ++TDNG+QF S+ F    +   I+   ++  +PQ NGQAE+ N+ I+  L+K+L   KG
Sbjct: 1106 EIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKG 1165

Query: 329  DWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLN--QNDQL 386
             W  +L +VLWA RTTP   T E+P+ L +G EAVIPAEI+ PSAR      N  +N+++
Sbjct: 1166 AWFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENNEM 1225

Query: 387  LGEDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGK 446
            + + +D + ERR  A  R        A  YN  V  RSF  G LVL+           GK
Sbjct: 1226 IIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGK 1285

Query: 447  LAAKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
            L   WEGPY++      G Y+L  + GK + R WN+ +L+R+Y
Sbjct: 1286 LGISWEGPYKITHVVRNGVYRLINMEGKTVRRAWNSMHLKRFY 1328


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  254 bits (648), Expect = 1e-67
 Identities = 136/369 (36%), Positives = 195/369 (51%), Gaps = 44/369 (11%)

Query: 115  DDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDA 174
            + L++RG S P L  +       V++E+HEG CG H  GR++A K+ +  YYWPT+  D 
Sbjct: 951  NSLYRRGVSDPYLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDC 1010

Query: 175  ADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDY 234
              + ++C  CQ HA L H P    SS+ +P+PF +W MD++GP   +   ++YL+V  DY
Sbjct: 1011 VKYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLHRSTRGVQYLLVLTDY 1070

Query: 235  YTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQ 294
            ++KWIEAE                 ++  +G                          IK 
Sbjct: 1071 FSKWIEAEA----------------ILLNWG--------------------------IKV 1088

Query: 295  RFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESPY 354
             ++++ +PQ NGQAE+AN+ IL  L+KRL   KG W ++L  VLWAYRTTP  +TGE+P+
Sbjct: 1089 SYSTLRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPF 1148

Query: 355  RLTFGTEAVIPAEIREPSARTAGFDLN--QNDQLLGEDLDLLAERRAIANCRELIAKQEA 412
             L +G +AV+PAE+  P  R     LN  +N  +L + LD + ERR  A  +    +  A
Sbjct: 1149 SLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAA 1208

Query: 413  AIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLA 472
            A  YN KV  R F  GD VL+      +    GKL   WEGPY V E    G Y+L+ L 
Sbjct: 1209 ARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLE 1268

Query: 473  GKEIPRTWN 481
             + + R WN
Sbjct: 1269 DRPVQRPWN 1277


>At2g13230 pseudogene
          Length = 353

 Score =  216 bits (551), Expect = 2e-56
 Identities = 109/254 (42%), Positives = 162/254 (62%), Gaps = 8/254 (3%)

Query: 96  EKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRS 155
           +K EA+KL   A+ + +V + LFK   S PL+ C+ K+ A  V+ E+H GSCG++ GGR+
Sbjct: 108 DKWEARKLKAEAARFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRA 167

Query: 156 LARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLL 215
           LA K+ R GY+WPT+ KD       C+ CQR+A   H P   LSS+ SP+P  +W MD++
Sbjct: 168 LAIKIKRLGYFWPTMIKD-------CEKCQRNAPTIHLPAELLSSIASPYPLMRWSMDII 220

Query: 216 GPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLITDNG 275
           GP   +    K ++V  DY++K  EAE  A+I  A+V+ F +K+++ R GVP  ++TDNG
Sbjct: 221 GPMHASKQ-KKLVLVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNG 279

Query: 276 TQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAEQLD 335
           +QF S  F+   D   I+   ++  + Q NGQA++AN+ IL GL+KRL   KG W ++L+
Sbjct: 280 SQFISTRFQGFCDKWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELE 339

Query: 336 HVLWAYRTTPHSTT 349
            VLW++RTTP   T
Sbjct: 340 GVLWSHRTTPRRAT 353


>At2g06320 putative retroelement pol polyprotein
          Length = 466

 Score =  194 bits (494), Expect = 7e-50
 Identities = 120/382 (31%), Positives = 190/382 (49%), Gaps = 17/382 (4%)

Query: 110 YTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPT 169
           YT+  D +++          +++D    +L   H+ + G H        K+L+AG++WPT
Sbjct: 79  YTLCKDKIYR--------SYVSEDEVEGILLHCHDSAYGGHFATFKTVSKILQAGFWWPT 130

Query: 170 LEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLV 229
           + KDA + V +CD CQR  ++        + ++    F  WG+D +GPF ++ G  KY++
Sbjct: 131 MFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFPSSYG-NKYIL 189

Query: 230 VAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDG 289
           V VDY +KW+EA    T  +  V + F   +  RFGV  V+I+D G  F +K F +LL  
Sbjct: 190 VVVDYVSKWVEAIASPTNDAKVVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKK 249

Query: 290 LHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTT 349
             +K +  +  HPQT+GQ E +NR I   L K +G  + DW+ +LD  LWAY+T   +  
Sbjct: 250 HGVKHKVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPI 309

Query: 350 GESPYRLTFGTEAVIPAEIREP---SARTAGFDLNQNDQLLGEDLDLLAERRAIANCREL 406
           G +P+ L       +  E+      + +   FD+   ++     L  L E R  A     
Sbjct: 310 GTTPFNLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSK 369

Query: 407 IAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAY 466
           I K+   + ++KK++ + F  GD VL   S        GKL ++W GP+ + E    GA 
Sbjct: 370 IYKERTKLFHDKKIITKDFQVGDQVLLFNS--RLKIFPGKLKSRWSGPFCITEVRPYGAV 427

Query: 467 KLETLAGKEIPRTWNATNLRRY 488
              TLAGK    T N   L++Y
Sbjct: 428 ---TLAGKSGVFTVNGQRLKKY 446


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  179 bits (453), Expect = 4e-45
 Identities = 117/382 (30%), Positives = 184/382 (47%), Gaps = 45/382 (11%)

Query: 110  YTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPT 169
            YT+  D +++         C+++D    +L   H  + G H        K+L+AG++WP+
Sbjct: 1375 YTLCKDKIYRT--------CVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPS 1426

Query: 170  LEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLV 229
            + KDA + + +CD  +                     F  WG+D +GPF ++ G  KY++
Sbjct: 1427 MFKDAQEFISKCDSFEN--------------------FDVWGIDFMGPFPSSYG-NKYIL 1465

Query: 230  VAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDG 289
            VA+DY +KW+EA    T  +  V + F   +  RFGVP ++I+D G  F +KGF +LL  
Sbjct: 1466 VAIDYVSKWVEAIASHTNDARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKK 1525

Query: 290  LHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTT 349
              +K +        T+GQ E +NR I   L K +G  + DW+ +L+  LWAYRT   +  
Sbjct: 1526 HGVKHK--------TSGQVEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPI 1577

Query: 350  GESPYRLTFGTEAVIPAEIREP---SARTAGFDLNQNDQLLGEDLDLLAERRAIANCREL 406
            G +P+ L +G    +P E+      + +   FD+   ++     L+ L + R  A     
Sbjct: 1578 GTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSK 1637

Query: 407  IAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAY 466
            I K+     ++KK+V R F  GD VL   S        GKL ++W GP+ V   T    Y
Sbjct: 1638 IYKERTKSFHDKKIVSRDFKVGDQVLLFNS--RLRLFPGKLKSRWSGPFSV---TAVRPY 1692

Query: 467  KLETLAGKEIPRTWNATNLRRY 488
               TLAGK    T N   L++Y
Sbjct: 1693 GAITLAGKNGDFTVNGQRLKKY 1714


>At2g13060 pseudogene
          Length = 930

 Score =  174 bits (440), Expect = 1e-43
 Identities = 103/336 (30%), Positives = 164/336 (48%), Gaps = 10/336 (2%)

Query: 101 KKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKV 160
           K+ +R    Y      L+K  +     +C+A      +L+  H  S G H        KV
Sbjct: 161 KRFLREIRRYQWDEPYLYKHSYDGIYRRCIAATEVPSILSHCHSSSYGGHFATFKTVSKV 220

Query: 161 LRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDT 220
           L+A ++WPT+ +D    + QCDPCQR   +        +  +    F +WG+D +GPF  
Sbjct: 221 LQADFWWPTMFRDTQKFISQCDPCQRRGKISKRNEMPPNFRLEVEVFDRWGIDFMGPFPP 280

Query: 221 APG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTS 280
           +   L Y++V VDY +KW+EA       SA V + F   +  RFGVP ++I+D    F +
Sbjct: 281 SNKNL-YILVDVDYVSKWVEAIASLKNDSAVVMKLFKSIIFPRFGVPRIVISDGDKHFIN 339

Query: 281 KGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWA 340
           K    LL    ++ R  +  HPQT+GQ E +NR I   L K +G AK +W+ +L   LWA
Sbjct: 340 KILEKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTVGKAKKEWSYKLYDALWA 399

Query: 341 YRTTPHSTTGESPYRLTFGTEAVIPAEIREPSA---RTAGFDLNQNDQLLGEDLDLLAER 397
           Y+T   +  G +P+ L +G    +P E+   +A   +   FD+    +    +LD   E 
Sbjct: 400 YKTAFKTPLGTTPFHLLYGKACHLPVELEHKAAWAVKMMNFDIKSAGE---SELD---EI 453

Query: 398 RAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQ 433
           R  A     + K+     ++KK++ R+F   D +L+
Sbjct: 454 RIHAYDNSKLYKERTKAYHDKKILTRTFEPNDQILR 489


>At2g11940 putative retroelement gag/pol polyprotein
          Length = 1212

 Score =  172 bits (437), Expect = 3e-43
 Identities = 118/400 (29%), Positives = 184/400 (45%), Gaps = 72/400 (18%)

Query: 90   SGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGH 149
            +G LP +K EA+KL    + + + +D L++R  S P   C+  ++   V+ EIH+G+CG+
Sbjct: 884  NGVLPTDKWEARKLKATCARFCLADDILYRRIISAPDAICIFGEQTRTVIKEIHDGTCGN 943

Query: 150  HLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQ 209
            H GGRSLA K+ + GY+WPT+  D          C+ +A   H         +SP PF +
Sbjct: 944  HSGGRSLAFKLKKYGYFWPTMVAD----------CEAYA---HRSRRTFHFGISPLPFMK 990

Query: 210  WGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGV 269
            W MD++GP   +   +++L++      +W+EA   + IT  +V+ F +K +I R G+P  
Sbjct: 991  WSMDIVGPLHVSTRGVRFLLL------EWVEAAAYSYITQVQVRHFIWKEIICRHGLPYE 1044

Query: 270  LITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGD 329
            ++TDNG QF S+ F+       I+   ++  +PQ N +A                     
Sbjct: 1045 IVTDNGPQFISEQFKAFYAEWQIRLNRSTPRYPQGNVEA--------------------- 1083

Query: 330  WAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGE 389
                   V+ A    P +                    IR P    A      N++++ +
Sbjct: 1084 -------VIPAEIKVPRT------------------RRIRNPKNEAA------NNKMMVD 1112

Query: 390  DLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAA 449
             +D + ERR  A  R       AA  YN  V  RSF  G LVL+           GKL  
Sbjct: 1113 VIDTIDERRNRALVRMQNYHNAAAQYYNSNVRSRSFDVGTLVLRRIHQNTAEKGAGKLGI 1172

Query: 450  KWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
             WEGPY++      G   L  + GK + R WNA +L+R+Y
Sbjct: 1173 SWEGPYKITHIVRNGDC-LINMEGKTVRRAWNAAHLKRFY 1211


>At1g36830 hypothetical protein
          Length = 243

 Score =  171 bits (433), Expect = 8e-43
 Identities = 94/240 (39%), Positives = 136/240 (56%), Gaps = 4/240 (1%)

Query: 212 MDLLGPFDTAPG*--LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGV 269
           MD++GP + + G   LK L+V  DY TKWIEA+    +T  +V+ F ++N++ + G+P  
Sbjct: 1   MDVVGPMEASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIPYE 60

Query: 270 LITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGD 329
           +ITDNGT  TS+  +   D   I+   ++  +PQ NGQAE+AN+ IL  ++K L   K  
Sbjct: 61  IITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKKSM 120

Query: 330 WAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLN--QNDQLL 387
           W++ L  VLWAYRTTP  +T E+P+ L +G EAVIP     PS R      N   N Q+L
Sbjct: 121 WSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMNTQML 180

Query: 388 GEDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKL 447
            +++D + ERR  A  R    +Q     YN  + +R F  G+LVL+      R    GKL
Sbjct: 181 RDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKL 240


>At3g31530 hypothetical protein
          Length = 831

 Score =  165 bits (417), Expect = 6e-41
 Identities = 103/308 (33%), Positives = 154/308 (49%), Gaps = 63/308 (20%)

Query: 91  GWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHH 150
           G LP +K +A+KL  +A+ + +V+  L+K   S PL+ C+  +    ++ EIH GS    
Sbjct: 585 GKLPSDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHSGS---- 640

Query: 151 LGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQW 210
                                               HA   H P   LSS+ SP+PF +W
Sbjct: 641 ------------------------------------HAPTIHQPAELLSSIASPYPFMRW 664

Query: 211 GMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVL 270
            MD++GP   +    K ++V  DY++KWIEAE  A+I  A+V+ F  K+++ R G+P  +
Sbjct: 665 SMDIIGPMHPSKQ-KKLVLVLTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEI 723

Query: 271 ITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDW 330
           +TDNG+QF S  F+   D   I+   ++  +PQ NGQAE+AN                  
Sbjct: 724 VTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEAAN------------------ 765

Query: 331 AEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLN--QNDQLLG 388
             +L+ VLW +RTTP   T E+P+   +GTE VIPAE+  PS R +    N   N Q   
Sbjct: 766 --ELEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVPSLRRSLSPENDPDNTQTPL 823

Query: 389 EDLDLLAE 396
           ++LDL+ E
Sbjct: 824 DELDLIDE 831


>At1g37200 hypothetical protein
          Length = 1564

 Score =  133 bits (334), Expect = 3e-31
 Identities = 69/187 (36%), Positives = 104/187 (54%), Gaps = 12/187 (6%)

Query: 91   GWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHH 150
            G  P +K E +KL  +++ Y I+   L KR  + P + C    +   ++  +HEG CG H
Sbjct: 1259 GITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQCGSH 1318

Query: 151  LGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQW 210
              GR+L R ++ A         D   H  +CD CQRHA   H PP  +SS+ SP+PF +W
Sbjct: 1319 YSGRTL-RCIMLA---------DCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPFMKW 1368

Query: 211  GMDLLGPFDTAPG--*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPG 268
             MD++ P + + G   LK L+V  DY TKWIE +    +T  +V+ F  +N++ R G+P 
Sbjct: 1369 SMDVVRPMEASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYRHGIPY 1428

Query: 269  VLITDNG 275
             ++TDNG
Sbjct: 1429 EIVTDNG 1435



 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 392  DLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKW 451
            D + ERR  A  +    +Q A   YN  + +R F  G+LVL+      R    GKL   W
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524

Query: 452  EGPYRVVEATGTGAYKL-ETLAGKEIPRTWNATNLRRYY 489
            EGPYR+ E    G YKL +   G    R WNA +L++Y+
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKYH 1563


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  114 bits (286), Expect = 9e-26
 Identities = 100/370 (27%), Positives = 156/370 (42%), Gaps = 21/370 (5%)

Query: 129 CLAKDRAAY--VLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQR 186
           C+  DRA    +L E H+     H G   + R + R  Y+W  + KD A  V +C  CQ 
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602

Query: 187 HADLHHAPPARLSSL-VSPWPFHQWGMDLLGPFDTAPG*LKYLV-VAVDYYTKWIEAEPL 244
               H  P   L +L +S W +    MD +    T        V V VD  TK      +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662

Query: 245 ATITSARV-QRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQ 303
           +    A +    +   ++R  G+P  +++D  T+FTSK +      L  +   ++  HPQ
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722

Query: 304 TNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAV 363
           T+GQ+E   + +   LR  + D  G+W + L  + +AY  +  ++ G SPY   +G    
Sbjct: 723 TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782

Query: 364 IPAEIREPSARTAGFDLNQNDQLLGEDL-DLLAERRAIANCRELIAKQEAAIRYNKKVVL 422
            P        R          +L G  + D   ER      +   A+       NK+   
Sbjct: 783 TPLCWTPVGER----------RLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKE 832

Query: 423 RSFAAGDLVLQNASI---GARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAGKEI-PR 478
             F  GDLV   A       R T R KL+ ++ GPY+V+E  G  AYKL+      +   
Sbjct: 833 LEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNVFHN 892

Query: 479 TWNATNLRRY 488
            ++ + LR+Y
Sbjct: 893 VFHVSQLRKY 902


>At2g10780 pseudogene
          Length = 1611

 Score =  112 bits (280), Expect = 5e-25
 Identities = 97/350 (27%), Positives = 148/350 (41%), Gaps = 20/350 (5%)

Query: 129  CLAKDRAAY--VLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQR 186
            C+  DRA    +L E H+     H G   + R + R  Y+W  ++KD A  V +C  CQ 
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210

Query: 187  HADLHHAPPARLSSLVSP-WPFHQWGMDLLGPFDTAPG*LKYLV-VAVDYYTKWIEAEPL 244
                H  P   L +L  P W +    MD +    T        V V VD  TK      +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270

Query: 245  ATITSARV-QRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQ 303
            +    A +    +   ++R  G+P  +++D  T+FTSK ++     L  +   ++  HPQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330

Query: 304  TNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAV 363
            T+ Q+E   + +   LR  + D  G+W + L  V +AY  +  ++ G SPY   +G    
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390

Query: 364  IPAEIREPSARTAGFDLNQNDQLLGEDL-DLLAERRAIANCRELIAKQEAAIRYNKKVVL 422
             P        R          +L G  + D   ER      +   A+       NK+   
Sbjct: 1391 TPLCWTPVGER----------RLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKE 1440

Query: 423  RSFAAGDLVLQNASI---GARSTERGKLAAKWEGPYRVVEATGTGAYKLE 469
              F  GDLV   A       R T R KL+ ++ GPY+V+E  G  AYKL+
Sbjct: 1441 LEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 1490


>At4g07610
          Length = 276

 Score =  105 bits (262), Expect = 6e-23
 Identities = 55/158 (34%), Positives = 88/158 (54%), Gaps = 1/158 (0%)

Query: 130 LAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHAD 189
           +++D    +L   H  + G +        K+L+AG++WPT+ K+A + V +CD C R  +
Sbjct: 76  VSEDEVEGILLHCHCSTYGGNFTTFKTVSKILQAGFWWPTMFKEAQEFVLKCDSCHRKGN 135

Query: 190 LHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITS 249
           +        + ++    F  WG+D +GPF ++ G  KY++VAVDY +KWIEA    T  +
Sbjct: 136 ISKRNEMPQNPILEVELFDVWGIDFIGPFPSSYG-NKYILVAVDYVSKWIEATASPTNDA 194

Query: 250 ARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLL 287
             V + F   +  RFGVP V+I+D G  F +K F +LL
Sbjct: 195 KVVLKLFKTIIFSRFGVPRVVISDGGKHFINKVFENLL 232


>At4g07850 putative polyprotein
          Length = 1138

 Score =  100 bits (248), Expect = 2e-21
 Identities = 92/357 (25%), Positives = 152/357 (41%), Gaps = 22/357 (6%)

Query: 139  LAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARL 198
            + E H G    H G  S   KV++  ++WP +++D     ++C  C++ A     P    
Sbjct: 763  IREAHGGGLMGHFGV-SKTLKVMQDHFHWPHMKRDVERMCERCTTCKQ-AKAKSQPHGLC 820

Query: 199  SSLVSPWPFHQWG---MDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPL-ATITSARVQR 254
            + L  P P H W    MD +            + V VD ++K     P   T  +  +  
Sbjct: 821  TPL--PIPLHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIAN 878

Query: 255  FFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRV 314
             F++ V+R  G+P  +++D  T+F S  ++ L   L  K  F++  HPQT+GQ E  NR 
Sbjct: 879  LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 938

Query: 315  ILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIR----- 369
            +   LR  +      W + L HV +AY  + HS T  SP+++ +G   + P ++      
Sbjct: 939  LSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPLI 998

Query: 370  EPSARTAGFDLNQNDQLLGE-DLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAG 428
                R   F   +  +L+   D      +R   N   L  + E  +R N   V       
Sbjct: 999  SIHLRKERFPNKRKSKLMPRMDGSFKVLKRINDNAYSLDLQDETDLRSNPFQV----GED 1054

Query: 429  DLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNL 485
            D+++ +   GA+     +L  +  G  + +E    GA K E L   E P T + T L
Sbjct: 1055 DVIMGSLDHGAKE----QLEPEEFGERKQLEDGELGAKKDEALHVLEGPITRSKTKL 1107


>At4g04060 putative transposon protein
          Length = 375

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 22/158 (13%)

Query: 153 GRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGM 212
           GR + R V+  GY+WPT+  +   H  +CD CQRHA   H  P  +SS+ SP+PF +W M
Sbjct: 186 GRLMKRSVV--GYFWPTMLANCIAHSLRCDKCQRHAPTLHQLPKEMSSISSPYPFMKWSM 243

Query: 213 DLLGPFDTAPG--*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVL 270
           D++GP + + G   LK L+V                 T  +V+ F ++N++ R G+P  +
Sbjct: 244 DVVGPMEASGGKKKLKNLLV-----------------TEKQVEDFLWENIVCRHGIPYEI 286

Query: 271 ITDNGTQFTSKGFRDLLDGLHIKQRF-TSVEHPQTNGQ 307
           ITDNGT  TS   +   D   I+    T V H  T+ Q
Sbjct: 287 ITDNGTNLTSGKIKAFCDKCKIRLTISTPVTHKVTDRQ 324


>At2g07410 putative retroelement pol polyprotein
          Length = 411

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 83/278 (29%), Positives = 126/278 (44%), Gaps = 38/278 (13%)

Query: 215 LGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLITDN 274
           +G F ++ G  KY++VAVDY +KW+EA    T  +  V + F   +  RFGV  V+I+D 
Sbjct: 1   MGSFPSSYG-NKYILVAVDYVSKWVEAIVSPTNDAKVVLKLFKTIIFTRFGVHMVVISDG 59

Query: 275 GTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAEQL 334
              F +K F +LL    +K +  +  HPQT+GQ E +NR I   L K +G  + D + +L
Sbjct: 60  RKHFINKAFENLLKKHGVKHKVATSYHPQTSGQVEISNREIKAILEKTVGVTRKDLSAKL 119

Query: 335 DHVLWAYRT---TPHST-TGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGED 390
           D  LWAY+T   T   T  G +P+ L +     +P E+         F      +L+  D
Sbjct: 120 DDALWAYKTAFKTAFKTPIGTTPFNLLYAKSGHLPIELE--------FKAMWAVKLMNFD 171

Query: 391 LDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAK 450
           +                A++E  I+ N    +R        L+          + KL ++
Sbjct: 172 IK--------------TAEEERLIQLNDLDEIR--------LEAYESSKNYKGKRKLKSR 209

Query: 451 WEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRY 488
             GP+ V E    GA    TLA K    T N   L++Y
Sbjct: 210 LFGPFCVTEIRPYGAV---TLAVKSGDFTVNGQRLKKY 244


>At2g12040 T10J7.2
          Length = 976

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 70/251 (27%), Positives = 113/251 (44%), Gaps = 24/251 (9%)

Query: 182 DPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEA 241
           DPCQR   + +        ++    F  WG++ +GP   +   L Y++V VDY +KW+EA
Sbjct: 544 DPCQRRGKISNCNEMPQKFILEVKVFDCWGINFMGPIPPSNKNL-YILVVVDYVSKWVEA 602

Query: 242 EPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEH 301
                  SA V + F   +   FGVP ++I+D G  F +K    LL    ++ R  +  H
Sbjct: 603 IASPKNDSAVVMKLFKCIIFPHFGVPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYH 662

Query: 302 PQTNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTE 361
           PQT+GQ E +NR I   L K +                A++T      G +P+ L +G  
Sbjct: 663 PQTSGQVEVSNRQIKEILEKTV----------------AFKT----PLGTTPFHLLYGKA 702

Query: 362 AVIPAEIREPSARTA---GFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAAIRYNK 418
             +P E+   +A T     FD+    +     L+ L E +  A     + K+     ++K
Sbjct: 703 CHLPVELEHKAAWTVKMLNFDIKSAGERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDK 762

Query: 419 KVVLRSFAAGD 429
           K++ R+F   D
Sbjct: 763 KILTRTFEPKD 773


>At3g31970 hypothetical protein
          Length = 1329

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 94/357 (26%), Positives = 155/357 (43%), Gaps = 36/357 (10%)

Query: 129  CLAKDRAAY--VLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQR 186
            C+ KD      +L+E H      H     + R + R  Y W  +++D A+ V +CD CQ 
Sbjct: 895  CVPKDEELRREILSEAHASMFSIHPRATKMYRDLKRY-YQWVGMKRDVANWVTECDVCQL 953

Query: 187  HADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*-----LKYLVVAVDYYTKWIEA 241
                H  P   L SL    P  +W  D +   D   G         + V VD  TK   A
Sbjct: 954  VKAEHQVPGGLLQSL----PILEWKWDFI-TMDFVVGLPVSRTKDAIWVIVDRLTK--SA 1006

Query: 242  EPLA---TITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTS 298
              LA   T  +  + + +   ++   GVP  +++D  ++FTS  +R     +  K + ++
Sbjct: 1007 HFLAIRKTDGAVLLAKKYVSEIVELHGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMST 1066

Query: 299  VEHPQTNGQAESANRVILRGLRKRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRLTF 358
              HPQT+GQ+E   + +   LR  + D  G WA+ L  V +AY  +  ++   +P+   +
Sbjct: 1067 AYHPQTDGQSERTIQTLEDMLRMCVLDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALY 1126

Query: 359  GTEAVIP---AEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAAIR 415
            G     P    ++ E S   A + L   +++          R    N +E   +Q +   
Sbjct: 1127 GRPCRTPLCWTQVGERSIYGADYVLETTERI----------RVLKLNMKEAQDRQRSYAD 1176

Query: 416  YNKKVVLRSFAAGDLV-LQNASIGA--RSTERGKLAAKWEGPYRVVEATGTGAYKLE 469
              ++ +   F  GD V L+ A +    RS    KL  ++ GP+R+VE  G  AY+LE
Sbjct: 1177 KRRREL--EFEVGDRVYLKMAMLRGPNRSISETKLTPRYMGPFRIVERVGPVAYRLE 1231


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,917,451
Number of Sequences: 26719
Number of extensions: 461460
Number of successful extensions: 1114
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 125
length of query: 489
length of database: 11,318,596
effective HSP length: 103
effective length of query: 386
effective length of database: 8,566,539
effective search space: 3306684054
effective search space used: 3306684054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)