Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0081b.1
         (360 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g14970 seed maturation -like protein                               360  e-100
At2g14910 unknown protein                                             199  3e-51
At1g63610 unknown protein                                             100  2e-21
At3g53350 unknown protein                                              34  0.14
At1g07110 fructose-6-phosphate,2-kinase/fructose-2, 6-bisphospha...    33  0.18
At5g47380 putative protein                                             33  0.24
At1g64330 unknown protein                                              32  0.41
At2g13440 similar to glucose inhibited division protein A from p...    31  0.91
At2g24070 unknown protein                                              31  1.2
At1g16800 hypothetical protein                                         31  1.2
At4g30790 putative protein                                             30  1.6
At4g22770 putative DNA binding protein                                 30  1.6
At1g75720 hypothetical protein                                         30  1.6
At2g40840 4-alpha-glucanotransferase                                   30  2.0
At4g14120 unknown protein                                              30  2.7
At1g67170 unknown protein                                              30  2.7
At5g39960 putative protein                                             29  3.5
At3g55690 unknown protein                                              29  3.5
At1g65910 unknown protein                                              29  3.5
At1g35780 unknown protein                                              29  3.5

>At5g14970 seed maturation -like protein
          Length = 355

 Score =  360 bits (924), Expect = e-100
 Identities = 210/370 (56%), Positives = 263/370 (70%), Gaps = 25/370 (6%)

Query: 1   MAALSWRPF-ILSRLTDLSPNPLHPPKPPPLFLRRRRCF-----LTSCYADGFSSSSSSS 54
           MAA S R F +LSR+TDLS   L   +PPP     R  +     ++S       S    S
Sbjct: 1   MAAASARAFFMLSRVTDLSKKKLILHQPPPSSSPHRLPYAPNRAVSSSAVISCLSGGGVS 60

Query: 55  SSDDVVSTRKSTFDRGFTVIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGLLPS 114
           S D  VSTR+S  DRGF VIAN++ RI+PLD SVISKG+SD+A+DSMKQTIS+MLGLLPS
Sbjct: 61  SDDSYVSTRRSKLDRGFAVIANLVNRIQPLDTSVISKGLSDSAKDSMKQTISSMLGLLPS 120

Query: 115 DHFSVTVTVSKHPLHRLLVSSIITGYTLWNAEYRMSLTRNLDIASPCGARDSDCEKRSEI 174
           D FSV+VT+S+ PL+RLL+SSIITGYTLWNAEYR+SL RN DI  P   R  + E +S  
Sbjct: 121 DQFSVSVTISEQPLYRLLISSIITGYTLWNAEYRVSLRRNFDI--PIDPRKEE-EDQSSK 177

Query: 175 LEVKGGGEDGGEIEVASDLGLKDLENCSSSPRVFGDLPPQALNYIQQLQSELTNVKEELN 234
             V+ G E G    ++ DLG    E    SP+VFGDL P+AL+YIQ LQSEL+++KEEL+
Sbjct: 178 DNVRFGSEKG----MSEDLGNCVEEFERLSPQVFGDLSPEALSYIQLLQSELSSMKEELD 233

Query: 235 ARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNILSRFFVD 294
           ++K++ +++E ++G RN+LL+YLRSLDPEMVTELS+ SS EVE+I++QLVQN+L R F D
Sbjct: 234 SQKKKALRIECEKGNRNDLLDYLRSLDPEMVTELSQLSSPEVEEIVNQLVQNVLERLFED 293

Query: 295 DASGSFME----QSVEGNIDNHPDNGDEFSDTVGTSRDYLAKLLFWCMLLGHHLRGLENR 350
             + +FM+    ++ EG        GD     V TSRDYLAKLLFWCMLLGHHLRGLENR
Sbjct: 294 QTTSNFMQNPGIRTTEG--------GDGTGRKVDTSRDYLAKLLFWCMLLGHHLRGLENR 345

Query: 351 LQLSCVVGLL 360
           L LSCVVGLL
Sbjct: 346 LHLSCVVGLL 355


>At2g14910 unknown protein
          Length = 386

 Score =  199 bits (505), Expect = 3e-51
 Identities = 135/366 (36%), Positives = 203/366 (54%), Gaps = 29/366 (7%)

Query: 19  PNPLHPPKPP-------PLFLRRRRCFLTSCYADGFSSSSSSSSSDDVVSTRKSTFDRGF 71
           P  LH P  P       P F RR R    +  +   S++ SS+  DD  S    T     
Sbjct: 14  PQLLHKPTKPLPFLFLLPRFNRRFRSLTITSSSTTSSNNFSSNCGDDGFSLDDFTLHSDS 73

Query: 72  T-----VIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGLLPSDHFSVTVTVSKH 126
                 V++++++ IEPLD S+I K V     D+MK+TIS MLGLLPSD F V +     
Sbjct: 74  RSPKKCVLSDLIQEIEPLDVSLIQKDVPVTTLDAMKRTISGMLGLLPSDRFQVHIESLWE 133

Query: 127 PLHRLLVSSIITGYTLWNAEYRMSLTRNLDIASPCGARDSDCEKRSEILEVKGGGEDGGE 186
           PL +LLVSS++TGYTL NAEYR+ L +NLD++   G  DS   + +E  +++G   D   
Sbjct: 134 PLSKLLVSSMMTGYTLRNAEYRLFLEKNLDMSG--GGLDSHASENTE-YDMEGTFPDEDH 190

Query: 187 IEVASDLGLKDLENCSSSPRVFGDLPPQALNYIQQLQSELTNVKEELNARKQEMMQLEYD 246
           +    D   ++L   +      G +  +A  YI +LQS+L++VK+EL   +++   L+  
Sbjct: 191 VSSKRDSRTQNLSE-TIDEEGLGRVSSEAQEYILRLQSQLSSVKKELQEMRRKNAALQMQ 249

Query: 247 RGI---RNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNIL--------SRFFVDD 295
           + +   +N+LL+YLRSL PE V ELS P++ EV++ IH +V  +L        S+F   +
Sbjct: 250 QFVGEEKNDLLDYLRSLQPEKVAELSEPAAPEVKETIHSVVHGLLATLSPKMHSKFPASE 309

Query: 296 A--SGSFMEQSVEGNIDNHPDNGDEFSDTVGTSRDYLAKLLFWCMLLGHHLRGLENRLQL 353
              + +   +S E   +   +   +F   +  +RDYLA+LLFWCMLLGH+LRGLE R++L
Sbjct: 310 VPPTETVKAKSDEDCAELVENTSLQFQPLISLTRDYLARLLFWCMLLGHYLRGLEYRMEL 369

Query: 354 SCVVGL 359
             V+ L
Sbjct: 370 MEVLSL 375


>At1g63610 unknown protein
          Length = 340

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 55/318 (17%)

Query: 44  ADGFSSSSSSSSSDDVVSTRKSTFDRGFTVIANMLRRIEPLDNSVISKGVSDAARDSMKQ 103
           A G SS SS+ SS     TR+    R   ++   ++ ++P    +  K       ++M+Q
Sbjct: 61  AYGSSSDSSADSSTPPNGTRQPKSRRD--ILLEYVQNVKPEFMEMFVKRAPKHVVEAMRQ 118

Query: 104 TISTMLGLLPSDHFSVTVTVSKHPLHRLLVSSIITGYTLWNAEYRMSLTRNLDIASPCGA 163
           T++ M+G LP   F+VTVT     L +L++S ++TGY   NA+YR+ L ++L+  +    
Sbjct: 119 TVTNMIGTLPPQFFAVTVTSVAENLAQLMMSVLMTGYMFRNAQYRLELQQSLEQVALPEP 178

Query: 164 RDSDCEKRSEILEVKGGGED---GGEIEVASDLGLKDLENCSSSPRVFGDLPPQALNYIQ 220
           RD            KGG ED   G +  V+ +  +    N S   ++       A  YI+
Sbjct: 179 RDQ-----------KGGDEDYAPGTQKNVSGE--VIRWNNVSGPEKI------DAKKYIE 219

Query: 221 QLQSELTNVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEVEDII 280
            L++E+  +  ++  +             +N +LEYL+SL+P+ + EL+  +  +V   +
Sbjct: 220 LLEAEIEELNRQVGRKSANQ---------QNEILEYLKSLEPQNLKELTSTAGEDVAVAM 270

Query: 281 HQLVQNILSRFFVDDASGSFMEQSVEGNIDNHPDNGDEFSDTVGTSRDYLAKLLFWCMLL 340
           +  V+ +L+   V D +       ++ N+               TS   LAKLL+W M++
Sbjct: 271 NTFVKRLLA---VSDPN------QMKTNVTE-------------TSAADLAKLLYWLMVV 308

Query: 341 GHHLRGLENRLQLSCVVG 358
           G+ +R +E R  +  V+G
Sbjct: 309 GYSIRNIEVRFDMERVLG 326


>At3g53350 unknown protein
          Length = 396

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 215 ALNYIQQLQSELTNVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSV 274
           A+N +Q+L+S+L   + EL   K E+  LE          + +R L+ E V      SS+
Sbjct: 161 AINEVQKLKSKLFESESELEQSKYEVRSLE----------KLVRQLEEERVNSRDSSSSM 210

Query: 275 EVEDI 279
           EVE++
Sbjct: 211 EVEEL 215


>At1g07110 fructose-6-phosphate,2-kinase/fructose-2,
           6-bisphosphatase (fkfbp)
          Length = 744

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 4/67 (5%)

Query: 228 NVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNI 287
           N+ EE  +RK++ ++  Y RG   + L+ ++ L+P ++ EL R     V  I HQ V   
Sbjct: 647 NMPEEYESRKKDKLRYRYPRG--ESYLDVIQRLEP-VIIELER-QRAPVVVISHQAVLRA 702

Query: 288 LSRFFVD 294
           L  +F D
Sbjct: 703 LYAYFAD 709


>At5g47380 putative protein
          Length = 598

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 12/85 (14%)

Query: 227 TNVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQN 286
           +NVKEEL+A K+E +      G    +    + L P+++   ++ +S+  +D++  L+ N
Sbjct: 474 SNVKEELDASKREFL------GANVVVKMQKKVLLPKIIERFTKEASLSFDDLMRWLIDN 527

Query: 287 ILSRFFVDDASGSFMEQSVEGNIDN 311
                  D+  G  +++ V+G  +N
Sbjct: 528 ------ADEKLGESIQKCVQGKPNN 546


>At1g64330 unknown protein
          Length = 555

 Score = 32.3 bits (72), Expect = 0.41
 Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 41/201 (20%)

Query: 43  YADGFSSSSSSSSSDDVVSTRKSTFDRGFTVIANMLRRIEPLDNSVISKGVSDAARDSMK 102
           +  G + SSSSSSSD     +     RG   I  + +++E  +  +    +  A  D  K
Sbjct: 89  HGKGENDSSSSSSSDSDSDKKSKRNGRGENEIELLKKQMEDANLEIADLKMKLATTDEHK 148

Query: 103 QTISTMLGLLPSDHFSVTVTVSKHPLHRLLVSSIITGYTLWNAEYRMS----LTRNLDIA 158
           + +        S+H  +        L +L  S  I G      E   S    L   L++A
Sbjct: 149 EAVE-------SEHQEI--------LKKLKESDEICGNLRVETEKLTSENKELNEKLEVA 193

Query: 159 SPCGARDSDCEKRSEILEVKGGGEDGGEIEVASDLGLKDLENCSSSPRVFGDLPPQALNY 218
              G  +SD  ++ E ++ +    DG E E+AS    KD E+               L  
Sbjct: 194 ---GETESDLNQKLEDVKKE---RDGLEAELASK--AKDHES--------------TLEE 231

Query: 219 IQQLQSELTNVKEELNARKQE 239
           + +LQ +    + EL   KQE
Sbjct: 232 VNRLQGQKNETEAELEREKQE 252


>At2g13440 similar to glucose inhibited division protein A from
          prokaryotes
          Length = 723

 Score = 31.2 bits (69), Expect = 0.91
 Identities = 18/37 (48%), Positives = 23/37 (61%), Gaps = 1/37 (2%)

Query: 21 PLHPPKPPPLFLRRRRCFLTSCYADGFSSSSSSSSSD 57
          P H P+   +FLR R+ FL    A  FSSSSS ++SD
Sbjct: 35 PFHSPRLC-VFLRPRQLFLNRPLAASFSSSSSGATSD 70


>At2g24070 unknown protein
          Length = 560

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 39  LTSCYADGFSSSSSSSSSDDVVSTRK------STFDRGFTVIANMLRRIEPLDNSVISKG 92
           L SCY +G    SSS++S+D  ST        S+  R   + A   R   P  +S  S  
Sbjct: 252 LFSCYDNGRLEVSSSTTSEDSSSTESLKHFSTSSLPRLHPMSAPGSRTASPSRSSFSSSS 311

Query: 93  VSDAARDSMKQTISTMLGLLP 113
            S++   S  + +S M GL P
Sbjct: 312 SSNSRGMSPSRGVSPMRGLSP 332


>At1g16800 hypothetical protein
          Length = 1939

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 238 QEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEVE-----------DIIHQLVQN 286
           QEM + EY+      LL  LR LD E VT   +  ++++E           +++  + + 
Sbjct: 113 QEMYEKEYECSSVGPLLVVLRKLDEERVTRHLQEINLKIEKGTYDPDHHHAEVVSVMYEV 172

Query: 287 ILSRFFVDDASGSFMEQSVEGNIDN 311
           ++  FF DD S     +    +IDN
Sbjct: 173 LMFPFFFDDMSLCTEFEKFIESIDN 197


>At4g30790 putative protein
          Length = 1148

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 29/136 (21%)

Query: 149 MSLTRNLDIASPCGARDSDCEKR------------SEILEVKGGGEDGGEIEVASDLGL- 195
           +S   NL    PC AR+   E              S +LE +   E GG+   A ++G+ 
Sbjct: 722 VSCVSNLTSKQPCKAREGMDENMVDSSQVLSQPLDSSMLESQQNNEKGGKDSEAGEMGVF 781

Query: 196 -----------KDLENCSSSPRVF-----GDLPPQALNYIQQLQSELTNVKEELNARKQE 239
                      K L++  ++ R       GD+  +  N + +  ++L+ ++ +LN   +E
Sbjct: 782 LSNSSTAESPQKSLDDNVATGRGLDAKDSGDIILELRNELMEKSNKLSEMESKLNGAMEE 841

Query: 240 MMQLEYDRGIRNNLLE 255
           +  L  +      LLE
Sbjct: 842 VSNLSRELETNQKLLE 857


>At4g22770 putative DNA binding protein
          Length = 334

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 27/97 (27%), Positives = 35/97 (35%), Gaps = 8/97 (8%)

Query: 12  SRLTDLSPNPLHPPKPPPLFLRRRRCFLTSCYADGFSSSSSSSSSDDVVSTRKSTFD-RG 70
           S  ++  PN + PP PPP     +  F  S   DGFSS             RK   D   
Sbjct: 35  SETSNTPPNSVAPPPPPP----PQNSFTPSAAMDGFSSGPIKKRRG---RPRKYGHDGAA 87

Query: 71  FTVIANMLRRIEPLDNSVISKGVSDAARDSMKQTIST 107
            T+  N +    P  + VI    +   R  MK    T
Sbjct: 88  VTLSPNPISSAAPTTSHVIDFSTTSEKRGKMKPATPT 124


>At1g75720 hypothetical protein
          Length = 197

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 221 QLQSELTNVKEELNARKQEMMQLEYDRGIRNNLLE 255
           Q+++ L+ +KEEL   KQE+ +L  D G+    L+
Sbjct: 78  QMRNSLSCLKEELERTKQELQKLRVDPGVNETKLD 112


>At2g40840 4-alpha-glucanotransferase
          Length = 858

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 25/105 (23%), Positives = 47/105 (43%), Gaps = 18/105 (17%)

Query: 208 FGDLPPQ-ALNYIQQLQSELTNVKEELNARK----------QEMMQLEYDRGIRNNLLEY 256
           FGD  P  A N++ + Q ++   KE+ N  K          ++ + LE +  +R ++ + 
Sbjct: 525 FGDFWPFIASNFLNETQKDMYEFKEDCNTEKKIVAKLKSLAEKSLLLENEDKVRRDVFDI 584

Query: 257 LRSL----DPEMVTELSRPSSVEVEDIIHQL---VQNILSRFFVD 294
           LR++    DPE   +     ++E       L    +N+L R + D
Sbjct: 585 LRNVVLIKDPEDARKFYPRFNIEDTSSFQDLDDHSKNVLKRLYYD 629


>At4g14120 unknown protein
          Length = 368

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 22/124 (17%)

Query: 121 VTVSKHPLHRLLVSSIITGYTLWNAEYRM-SLTRNLDIASPCGARDSDCEKRSEILEVKG 179
           VTV    L R+   S I+    W+   +  +LT+ L++ SPC   +S+  +      V G
Sbjct: 77  VTVKNLCLRRVFSPSSISSD--WDFHVKGGNLTKELNVESPCDTPNSNVMREGSKYLVDG 134

Query: 180 GGEDGGEIEVASDLGLKDLENCSSSPRVFGDLPPQALNYIQQLQSELTNVKEELNARKQE 239
               GG++EV           CS +       PP     +     EL+ VK E  +  QE
Sbjct: 135 LVATGGDLEVV---------ECSQT------TPPD----LGMFTGELSLVKNEAGSINQE 175

Query: 240 MMQL 243
           + ++
Sbjct: 176 ISEV 179


>At1g67170 unknown protein
          Length = 359

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 28/108 (25%), Positives = 48/108 (43%), Gaps = 14/108 (12%)

Query: 219 IQQLQSELTNVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEVED 278
           I  L SEL N+++E    +Q     +Y++   N+ LE L++++   +T      + EVE 
Sbjct: 177 IPALMSELENLRQEY---QQCRATYDYEKKFYNDHLESLQAMEKNYMT-----MAREVEK 228

Query: 279 IIHQLVQNILSRFFVDDASGSFMEQSVEGNID--NHPDNGDEFSDTVG 324
           +  QL+ N  S    D  +G     ++   ID   H      + D  G
Sbjct: 229 LQAQLMNNANS----DRRAGGPYGNNINAEIDASGHQSGNGYYEDAFG 272


>At5g39960 putative protein
          Length = 614

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 16/60 (26%), Positives = 30/60 (49%)

Query: 52  SSSSSDDVVSTRKSTFDRGFTVIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGL 111
           S + S+ V++ R     RG  VI N + R+   +NS + K + +A    ++  I  + G+
Sbjct: 411 SMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEMYKKIKEAVPIEIQTVIPQITGI 470


>At3g55690 unknown protein
          Length = 293

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 22  LHPPKPPPLFLRRRRCFLTSCYADGFSSSSSSSSSDDVVSTRKSTFDRGFTVIANMLRRI 81
           L PP P        +    + +   F+SS+ S+S +D   T   T D     +A + RR+
Sbjct: 13  LPPPFPAVFEQPMEKLTFPNEFPYEFASSTFSTSPEDSTETEDETTDDEDDFLAGLTRRL 72

Query: 82  EPLDNSVISKG-VSDAARDSMKQTISTMLGL-LPSDHFS 118
                 + S   V+D ++   K T ST  GL  P+  FS
Sbjct: 73  ALSTQRLSSPSFVTDKSQMKPKVTESTQSGLGSPNGPFS 111


>At1g65910 unknown protein
          Length = 631

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 217 NYIQQLQSELTNVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEM--VTELSRPSSV 274
           N I++        K   N+ +       Y  G+  NL      + PE   +T+L   SS 
Sbjct: 161 NKIEEQHHGTKKNKGTTNSEQSTSSTCLYSDGMYENLENSGYPVSPETGGLTQLGNNSSS 220

Query: 275 EVEDIIHQLVQNILSRFFVDDASGSFMEQSVEGNIDNHPDNGD 317
           ++E I     +N  S+F   D S +F  QS  G I   P   D
Sbjct: 221 DMETI-----ENKWSQFMSHDTSFNFPPQSQYGTISYPPSKVD 258


>At1g35780 unknown protein
          Length = 286

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 28  PPLFLRRRRCFLTSCYADGFSSSSSSSSSDDVVSTRKSTFDRGFTVIANMLRRIEPLDNS 87
           PP  ++ R       Y D F    S +  D  + T K   DR FT ++          N+
Sbjct: 177 PPPEIKLRPTVRALAYKDNFDLGESDTKPDGELKTAKKIADRKFTDLSG---------NN 227

Query: 88  VISKGVSDAARDSMKQTIST 107
           V    VS  +  + ++ +ST
Sbjct: 228 VFKSDVSSPSSATAERLLST 247


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,392,124
Number of Sequences: 26719
Number of extensions: 371009
Number of successful extensions: 1887
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1859
Number of HSP's gapped (non-prelim): 42
length of query: 360
length of database: 11,318,596
effective HSP length: 101
effective length of query: 259
effective length of database: 8,619,977
effective search space: 2232574043
effective search space used: 2232574043
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)


Lotus: description of TM0081b.1