BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079b.1
(1571 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59265 polyprotein, putative 416 e-116
At1g58889 polyprotein, putative 416 e-116
At1g44510 polyprotein, putative 398 e-110
At4g02960 putative polyprotein of LTR transposon 342 8e-94
At4g16870 retrotransposon like protein 328 1e-89
At1g60020 hypothetical protein 327 3e-89
At1g53810 323 4e-88
At1g31210 putative reverse transcriptase 322 8e-88
At4g10690 retrotransposon like protein 321 2e-87
At2g14930 pseudogene 318 2e-86
At4g28900 putative protein 306 6e-83
At2g23330 putative retroelement pol polyprotein 265 1e-70
At2g20460 putative retroelement pol polyprotein 264 3e-70
At2g16000 putative retroelement pol polyprotein 258 1e-68
At2g07010 putative retroelement pol polyprotein 247 4e-65
At1g26990 polyprotein, putative 243 5e-64
At1g70010 hypothetical protein 242 1e-63
At1g36620 hypothetical protein 241 2e-63
At4g22040 LTR retrotransposon like protein 234 3e-61
At2g24660 putative retroelement pol polyprotein 228 2e-59
>At1g59265 polyprotein, putative
Length = 1466
Score = 416 bits (1069), Expect = e-116
Identities = 290/947 (30%), Positives = 449/947 (46%), Gaps = 172/947 (18%)
Query: 23 LSSTSLVH---KLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRAN 79
L++TS+++ + KL +N+L W + V + + L FL +PP + D A
Sbjct: 10 LNNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGT-DAAP 68
Query: 80 SVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQ 139
V NP + W++ D +++ +L ++S SV P V + QIWE + + S TQ
Sbjct: 69 RV-NPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQ 127
Query: 140 LRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHLMTIV 199
LR++L+ TKG+K DY++ + + + L +G P+ + E +E + + L E+Y ++ +
Sbjct: 128 LRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQI 187
Query: 200 TSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAPPLVPSQ 259
+++ P ++++ ++ HE+++ LA ++A
Sbjct: 188 AAKDTPPTLTEIHERLLNHESKI----------------LAVSSA--------------- 216
Query: 260 SPAPPQAPPPVAIAPPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGR 319
I ++ V++ + T +++ + + +R+ DNR+ NN + +
Sbjct: 217 ----------TVIPITANAVSHRNTTTTNN----NNNGNRNNRYDNRNN---NNNSKPWQ 259
Query: 320 GSYNNRGRGGDRSSV---QCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQAPAPVAP 376
S N ++S +CQIC GH A C + S + QP
Sbjct: 260 QSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQP------------ 307
Query: 377 TFGFGSSFGMMPQFGYSPFRGFQPYGAPSPFGMSFPNSGFGSGSPYASGGMFTPPGYGFG 436
PSPF P + GSPY+S
Sbjct: 308 ---------------------------PSPFTPWQPRANLALGSPYSSN----------- 329
Query: 437 SGYGFGLPPRAPARHIRAPQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGND 496
NW DSGATHH+T D + +S TG D
Sbjct: 330 -------------------------------NWLLDSGATHHITSDFNNLSLHQPYTGGD 358
Query: 497 QVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFE 556
V + +G +PI GS S S+ L L N+L VPNI KNL+SV + NGV E
Sbjct: 359 DVMVADGSTIPISHTGSTSLSTK---SRPLNLHNILYVPNIHKNLISVYRLCNANGVSVE 415
Query: 557 FHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPA 616
F P V +T LL+G D LY + P++S+ +S ASP+
Sbjct: 416 FFPASFQVKDLNTGVPLLQGKT-KDELYEW---------------PIASSQPVSLFASPS 459
Query: 617 VNTIVSTSNNVPSPTAYDLWHSRLGHPHYETLQSALTTCKISVPHKS-KYTICHSCCVAK 675
S + WH+RLGHP L S ++ +SV + S K+ C C + K
Sbjct: 460 ------------SKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINK 507
Query: 676 SHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSE 735
S+++P S S+ T PLE I++D+W + I S Y Y++ VD F+R+TW+Y LK+KS+
Sbjct: 508 SNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQ 566
Query: 736 TSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVE 795
FI F+ ++E +F +I + +D G EF L +F + GI+H + PHT NG E
Sbjct: 567 VKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSE 626
Query: 796 RKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYK 855
RKHRHIVETGL+LL+ A++P +YW +AF A +LINRLPTP+L SP+ KLF +Y
Sbjct: 627 RKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYD 686
Query: 856 ILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNE 914
LRVFG ACYP LRPYN KL +S++CVFLGYS + Y CL R+YIS+ V+F+E
Sbjct: 687 KLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDE 746
Query: 915 FKFPYSTLFSSEFPASNPSSVSSVI-PVISYVPSLQQPIPSPHHSHP 960
FP+S ++ P SS + + +P+ +P+P S P
Sbjct: 747 NCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDP 793
>At1g58889 polyprotein, putative
Length = 1466
Score = 416 bits (1069), Expect = e-116
Identities = 290/947 (30%), Positives = 449/947 (46%), Gaps = 172/947 (18%)
Query: 23 LSSTSLVH---KLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRAN 79
L++TS+++ + KL +N+L W + V + + L FL +PP + D A
Sbjct: 10 LNNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGT-DAAP 68
Query: 80 SVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQ 139
V NP + W++ D +++ +L ++S SV P V + QIWE + + S TQ
Sbjct: 69 RV-NPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQ 127
Query: 140 LRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHLMTIV 199
LR++L+ TKG+K DY++ + + + L +G P+ + E +E + + L E+Y ++ +
Sbjct: 128 LRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQI 187
Query: 200 TSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAPPLVPSQ 259
+++ P ++++ ++ HE+++ LA ++A
Sbjct: 188 AAKDTPPTLTEIHERLLNHESKI----------------LAVSSA--------------- 216
Query: 260 SPAPPQAPPPVAIAPPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGR 319
I ++ V++ + T +++ + + +R+ DNR+ NN + +
Sbjct: 217 ----------TVIPITANAVSHRNTTTTNN----NNNGNRNNRYDNRNN---NNNSKPWQ 259
Query: 320 GSYNNRGRGGDRSSV---QCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQAPAPVAP 376
S N ++S +CQIC GH A C + S + QP
Sbjct: 260 QSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQP------------ 307
Query: 377 TFGFGSSFGMMPQFGYSPFRGFQPYGAPSPFGMSFPNSGFGSGSPYASGGMFTPPGYGFG 436
PSPF P + GSPY+S
Sbjct: 308 ---------------------------PSPFTPWQPRANLALGSPYSSN----------- 329
Query: 437 SGYGFGLPPRAPARHIRAPQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGND 496
NW DSGATHH+T D + +S TG D
Sbjct: 330 -------------------------------NWLLDSGATHHITSDFNNLSLHQPYTGGD 358
Query: 497 QVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFE 556
V + +G +PI GS S S+ L L N+L VPNI KNL+SV + NGV E
Sbjct: 359 DVMVADGSTIPISHTGSTSLSTK---SRPLNLHNILYVPNIHKNLISVYRLCNANGVSVE 415
Query: 557 FHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPA 616
F P V +T LL+G D LY + P++S+ +S ASP+
Sbjct: 416 FFPASFQVKDLNTGVPLLQGKT-KDELYEW---------------PIASSQPVSLFASPS 459
Query: 617 VNTIVSTSNNVPSPTAYDLWHSRLGHPHYETLQSALTTCKISVPHKS-KYTICHSCCVAK 675
S + WH+RLGHP L S ++ +SV + S K+ C C + K
Sbjct: 460 ------------SKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINK 507
Query: 676 SHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSE 735
S+++P S S+ T PLE I++D+W + I S Y Y++ VD F+R+TW+Y LK+KS+
Sbjct: 508 SNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQ 566
Query: 736 TSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVE 795
FI F+ ++E +F +I + +D G EF L +F + GI+H + PHT NG E
Sbjct: 567 VKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSE 626
Query: 796 RKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYK 855
RKHRHIVETGL+LL+ A++P +YW +AF A +LINRLPTP+L SP+ KLF +Y
Sbjct: 627 RKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYD 686
Query: 856 ILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNE 914
LRVFG ACYP LRPYN KL +S++CVFLGYS + Y CL R+YIS+ V+F+E
Sbjct: 687 KLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDE 746
Query: 915 FKFPYSTLFSSEFPASNPSSVSSVI-PVISYVPSLQQPIPSPHHSHP 960
FP+S ++ P SS + + +P+ +P+P S P
Sbjct: 747 NCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDP 793
>At1g44510 polyprotein, putative
Length = 1459
Score = 398 bits (1023), Expect = e-110
Identities = 283/936 (30%), Positives = 431/936 (45%), Gaps = 176/936 (18%)
Query: 35 KLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSV--ENPAFLVWEQH 92
KL +N+L W + ++ + L +L + IPP + NSV NP+F +W++
Sbjct: 32 KLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPP----ETTTINSVVSANPSFTLWKRQ 87
Query: 93 DSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSK 152
D +F+ L+ ++SP+V V +S QIW + + + S QLR +++ +TKG+K
Sbjct: 88 DKLIFSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTK 147
Query: 153 NTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHLMTIVTSREFPCSISQAE 212
+Y++ + ++ L +G P+ + E +E I GL E+Y ++ + ++ +I++
Sbjct: 148 TIDEYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIH 207
Query: 213 AMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAPPLVPSQSPAPPQAPPPVAI 272
+I HE++L L+ P S P +
Sbjct: 208 ERLINHESKL----------------LSDEVPPSSSFPMS-------------------- 231
Query: 273 APPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGSYNNRGRGGDRS 332
N + + ++ +++ +R + + + + N++ +YN G+ +
Sbjct: 232 ------ANAVQQRNFNNNCNQNQHKNRYQGNTHNNNTNTNSQ----PSTYNKSGQRTFKP 281
Query: 333 SV-QCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQFG 391
+ +CQIC GH A C PA++S
Sbjct: 282 YLGKCQICSVQGHSARRCPQLQAMQLPASSS----------------------------A 313
Query: 392 YSPFRGFQPYGAPSPFGMSFPNSGFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAPARH 451
+SPF +Q P + GSPYA+
Sbjct: 314 HSPFTPWQ------------PRANLAIGSPYAA--------------------------- 334
Query: 452 IRAPQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSI 511
W DSGATHH+T D +A+S G + V + +G GL I+
Sbjct: 335 ---------------NPWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQT 379
Query: 512 GSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCK 571
GS S L L +L VP+I KNL+SV + N V EF P V +T
Sbjct: 380 GSTFLPS---QNRDLALHKVLYVPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGT 436
Query: 572 TLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPT 631
LL+G D LY + PV++ + + SP+ T +S+
Sbjct: 437 LLLQGRT-KDDLYEW---------------PVTNPPATALFTSPSPKTTLSS-------- 472
Query: 632 AYDLWHSRLGHPHYETLQSALTTCKISVP---HKSKYTICHSCCVAKSHRLPSSASSTLY 688
WHSRLGHP L + L+ K S+P S T C C + KSH+LP + SS
Sbjct: 473 ----WHSRLGHPSASILNTLLS--KFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHS 526
Query: 689 TAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVE 748
++PLE IF D+W + I S Y Y+L VD ++R+TW+Y L++KS+ FI F+A+VE
Sbjct: 527 SSPLEYIFTDVW-TSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVE 585
Query: 749 LKFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSL 808
+F KI+++ +D G EF L + GI+H + PHT NG ERKHRHIVETGL+L
Sbjct: 586 NRFQAKIRTLYSDNGGEFIALRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTL 645
Query: 809 LACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHL 868
L A++P YW +AF TA +LINR+PTPVL SP+ KLF +Y+ LRVFG C+P L
Sbjct: 646 LTQASVPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWL 705
Query: 869 RPYNSSKLSFRSQECVFLGYSSSHKGYKCLASD-GRIYISKDVQFNEFKFPYSTLFSSEF 927
RPY +KL RS+ CVFLGYS + Y CL D R+Y S+ V F+E +P++ +
Sbjct: 706 RPYTRNKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIREQS 765
Query: 928 PAS---NPSSVSSVIPVISYVPSLQQPIPSPHHSHP 960
+S P S SS P S P + SP S P
Sbjct: 766 QSSLVTPPESSSSSSPANSGFPCSVLRLQSPPASSP 801
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 342 bits (878), Expect = 8e-94
Identities = 267/924 (28%), Positives = 405/924 (42%), Gaps = 184/924 (19%)
Query: 35 KLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSVENPAFLVWEQHDS 94
KL +N+L W + V + + L FL +PP + + A NP + W + D
Sbjct: 25 KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTD--AVPRVNPDYTRWRRQDK 82
Query: 95 ALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNT 154
+++ +L ++S SV P V + QIWE + + S TQLR R
Sbjct: 83 LIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRFITR--------- 133
Query: 155 SDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHLMTIVTSREFPCSISQAEAM 214
+ L +G P+ + E +E + + L +DY ++ + +++ P S+++
Sbjct: 134 ----------FDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHER 183
Query: 215 VIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAPPLVPSQSPAPPQAPPPVAIAP 274
+I E++L L + + P
Sbjct: 184 LINRESKLLALNSAE------------------------------------------VVP 201
Query: 275 PSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGSYNNRGRGGDRSSV 334
++ V R + +R +R D+R+ +++N + G R R
Sbjct: 202 ITANV-VTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSD----NRQPKPYLG 256
Query: 335 QCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQFGYSP 394
+CQIC GH A C P + + TNQ Q SP
Sbjct: 257 RCQICSVQGHSAKRC--------PQLHQFQSTTNQ-------------------QQSTSP 289
Query: 395 FRGFQPYGAPSPFGMSFPNSGFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAPARHIRA 454
F +Q P + SPY + G A H
Sbjct: 290 FTPWQ------------PRANLAVNSPYNANNWLLDSG----------------ATH--- 318
Query: 455 PQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSA 514
+ S + L P +G D I+DG ++ PI GSA
Sbjct: 319 ---HITSDFNNLSFHQPYTGG------DDVMIADGSTI--------------PITHTGSA 355
Query: 515 SFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLL 574
S + + +L L +L VPNI KNL+SV + N V EF P V +T LL
Sbjct: 356 SLPT---SSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLL 412
Query: 575 RGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYD 634
+G D LY + P++S+ ++S ASP S +
Sbjct: 413 QGKT-KDELYEW---------------PIASSQAVSMFASPC------------SKATHS 444
Query: 635 LWHSRLGHPHYETLQSALTTCKISVPHKS-KYTICHSCCVAKSHRLPSSASSTLYTAPLE 693
WHSRLGHP L S ++ + V + S K C C + KSH++P S S+ + PLE
Sbjct: 445 SWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLE 504
Query: 694 LIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGL 753
I++D+W + I S Y Y++ VD F+R+TW+Y LK+KS+ FI F+++VE +F
Sbjct: 505 YIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQT 563
Query: 754 KIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACAN 813
+I ++ +D G EF L + + GI+H + PHT NG ERKHRHIVE GL+LL+ A+
Sbjct: 564 RIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHAS 623
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNS 873
+P +YW +AF A +LINRLPTP+L SP+ KLF P +Y+ L+VFG ACYP LRPYN
Sbjct: 624 VPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNR 683
Query: 874 SKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTL-FSSEFPASN 931
KL +S++C F+GYS + Y CL GR+Y S+ VQF+E FP+ST F
Sbjct: 684 HKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQ 743
Query: 932 PSSVSSVIPVISYVPSLQQPIPSP 955
S + P + +P+ +P+P
Sbjct: 744 RSDSAPNWPSHTTLPTTPLVLPAP 767
>At4g16870 retrotransposon like protein
Length = 1474
Score = 328 bits (842), Expect = 1e-89
Identities = 212/535 (39%), Positives = 277/535 (51%), Gaps = 62/535 (11%)
Query: 455 PQTMLA-SAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGS 513
P+ LA AP T NW DSGATHH+T D +A++ G+D V + +G L I GS
Sbjct: 318 PRANLAMGAPYTANNWLLDSGATHHITSDLNALALHQPYNGDD-VMIADGTSLKITKTGS 376
Query: 514 ASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTL 573
S L L +L VP+I KNLVSV + N V EF P V +T L
Sbjct: 377 TFLPS---NARDLTLNKVLYVPDIQKNLVSVYRLCNTNQVSVEFFPASFQVKDLNTGTLL 433
Query: 574 LRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSP-TA 632
L+G D LY + P N + PSP T
Sbjct: 434 LQGRT-KDELYEW----------------------------PVTNPKATALFTTPSPKTT 464
Query: 633 YDLWHSRLGHPHYETLQSALTTCKISVP---HKSKYTICHSCCVAKSHRLPSSASSTLYT 689
WHSRLGHP L + ++ K S+P S C C + KSH+LP S SS T
Sbjct: 465 LSSWHSRLGHPSSSILNTLIS--KFSLPVSVSASNKLACSDCFINKSHKLPFSISSIKST 522
Query: 690 APLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL 749
+PLE IF+D+W + I S Y Y+L VD +R+TW+Y L++KS+ + FI F+A+VE
Sbjct: 523 SPLEYIFSDVW-MSPILSPDNYKYYLVLVDHHTRYTWLYPLQQKSQVKSTFIAFKALVEN 581
Query: 750 KFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLL 809
+F KI+++ +D G EF L + GI+H + PHT NG ERKHRHIVETGL+LL
Sbjct: 582 RFQAKIRTLYSDNGGEFIALREFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLL 641
Query: 810 ACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLR 869
A++P YW +AF A +LINR+PTPVL SP+ KLF +Y+ LRVFG C+P LR
Sbjct: 642 TQASVPREYWPYAFAAAVYLINRMPTPVLSMESPFQKLFGSKPNYERLRVFGCLCFPWLR 701
Query: 870 PYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSE-- 926
PY +KL RS+ CVFLGYS + Y C R+Y S+ V F+E FP+S L S
Sbjct: 702 PYTHNKLEERSRRCVFLGYSLTQTAYLCFDVEHKRLYTSRHVVFDEASFPFSNLTSQNSL 761
Query: 927 ----FPASNPSSVSSVIPVISYVPS--------LQQPIP------SPHHSHPTAS 963
F S+ V+ ++ S +PS L Q P SPH S PT S
Sbjct: 762 PTVTFEQSSSPLVTPILSSSSVLPSCLSSPCTVLHQQQPPVTTPNSPHSSQPTTS 816
Score = 99.0 bits (245), Expect = 2e-20
Identities = 57/237 (24%), Positives = 118/237 (49%), Gaps = 2/237 (0%)
Query: 5 ASPTQIPTPTPISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQ 64
+S +P T ++ + ++ + KL +N+L W + ++ + L L
Sbjct: 3 SSANGLPATTDEAIVFTPQTIFNINTSNVTKLTSNNYLMWSLQIHALLDGYELAGHLDGS 62
Query: 65 PEIPPRFLSDEDRANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEA 124
E P L+ + ++ NP + +W++ D +F+ L+ ++SP V P V + QIW+
Sbjct: 63 IETPAPTLTTNNVVSA--NPQYTLWKRQDRLIFSALIGAISPPVQPLVSRATKASQIWKT 120
Query: 125 VLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAI 184
+ + + S QLR++++ + KG+K +Y+ ++++ L +G P+ + E +E I
Sbjct: 121 LTNTYAKSSYDHIKQLRTQIKQLKKGTKTIDEYVLSHTTLLDQLAILGKPMEHEEQVERI 180
Query: 185 FDGLREDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQ 241
+GL EDY ++ + ++ SI++ +I HEA+L ++ SA +AQ
Sbjct: 181 LEGLPEDYKTVVDQIEGKDNTPSITEIHERLINHEAKLLSTAALSSSSLPMSANVAQ 237
>At1g60020 hypothetical protein
Length = 1194
Score = 327 bits (839), Expect = 3e-89
Identities = 199/508 (39%), Positives = 269/508 (52%), Gaps = 39/508 (7%)
Query: 461 SAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPI 520
++P NW DSGATHH+T D + +S TG + V + +G GL I GSA S+P
Sbjct: 280 ASPYNANNWLLDSGATHHITSDLNNLSLHQPYTGGEDVTIADGSGLSISHTGSALISTP- 338
Query: 521 HTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGS 580
+L L ++L VPNI KNL+SV + N V EF P H V T LL+G
Sbjct: 339 --SRSLALTDVLYVPNIHKNLISVYRMCNANKVSVEFFPAHFQVKDLKTGVQLLQGRT-K 395
Query: 581 DGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRL 640
D LY + PV+ KP+S T T WHSRL
Sbjct: 396 DELYEW---------------PVNPP----KPSSHFTTTTPKTD--------LTSWHSRL 428
Query: 641 GHPHYETLQSALTTCKISVPHK-SKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADL 699
GHP TL+ ++ + V + K C C + K+H+LP ++ T PLE ++ DL
Sbjct: 429 GHPSLSTLKVVVSQFSLPVSNSLQKQFNCSDCLLNKTHKLPFHTNTITSTQPLEYLYIDL 488
Query: 700 WGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQ 759
W + I S + Y+L VD ++R++W Y +K+KS VF+ F+A+V KF KI +
Sbjct: 489 W-TSPIVSIDNFKYYLVIVDHYTRYSWFYPIKQKSHVKDVFMTFKALVANKFQRKIIHLY 547
Query: 760 TDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYW 819
+D G EF L GITH T PHT NG ERKHRHIVETGL+LL A+MP SYW
Sbjct: 548 SDNGGEFIALRSFLSSNGITHLTTPPHTPEHNGISERKHRHIVETGLTLLGQASMPKSYW 607
Query: 820 DHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFR 879
+AF A +LINR+ + V+G +SPY +LF +Y LRVFG C+P LRPY + KL R
Sbjct: 608 SYAFTIAIYLINRMSSDVIGGISPYKRLFGQAPNYLKLRVFGCLCFPWLRPYTTHKLDDR 667
Query: 880 SQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEF---PASNPSSV 935
CVFLGYS + Y CL + GR+Y S+ VQF E +P++ F SN S+
Sbjct: 668 PAPCVFLGYSQTQSAYLCLNRTTGRVYTSRHVQFVENTYPFTKPTLDPFTNLEESNNHSI 727
Query: 936 SSVIPVISYV--PSLQQPIPSPHHSHPT 961
++ +P +V PS+ P PH P+
Sbjct: 728 TTTVPSPPFVQLPSVPPPTRDPHQPPPS 755
Score = 80.9 bits (198), Expect = 5e-15
Identities = 45/218 (20%), Positives = 107/218 (48%), Gaps = 7/218 (3%)
Query: 8 TQIPTPTPISVAI---PQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQ 64
T P+ + ++A P L + ++ + + KL +N++ W + V ++ + L ++
Sbjct: 2 TSTPSGSTETIAFSETPTLLNVNMAN--ITKLTPTNYIMWNRQVHALLDGYDLAGYIDGS 59
Query: 65 PEIPPRFLSDEDRANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEA 124
P ++ S NPA+ W++ D +++ +L +++ ++ P + + +IWE
Sbjct: 60 VTAPSEMITTA--GVSAANPAYKFWKRQDKLIYSAILGTITTTIQPLLSRSNTAAEIWEK 117
Query: 125 VLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAI 184
+ + S Q+R ++ +KG+K ++Y + + + L +G P+ + E +E +
Sbjct: 118 LKSIYATPSWGHIQQMRQHIKQWSKGTKTITEYFQGHTTRFDELALLGKPLEHAEQIEFL 177
Query: 185 FDGLREDYSHLMTIVTSREFPCSISQAEAMVIAHEARL 222
GL EDY ++ R+ P ++++ ++ EA+L
Sbjct: 178 LGGLSEDYKSVVDQTEIRDKPPTLTELLEKLLNREAKL 215
>At1g53810
Length = 1522
Score = 323 bits (829), Expect = 4e-88
Identities = 192/497 (38%), Positives = 260/497 (51%), Gaps = 50/497 (10%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
W PDS A+ HVT++ + G+D + + +G LPI GS S +S + + L
Sbjct: 326 WIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGSIAS---SSGKIPL 382
Query: 529 KNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDG 588
K +L+ P+I K+L+SVSK D EF +N + T K L+ G DGLYS +
Sbjct: 383 KEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGR-NRDGLYSLE- 440
Query: 589 MHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYETL 648
P + + ST N S ++WH RLGH + E L
Sbjct: 441 -------------------------EPKLQVLYSTRQNSASS---EVWHRRLGHANAEVL 472
Query: 649 QSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESS 708
++ I + +K T+C +C + KS RLP S+ + PLE I DLWGP+ S
Sbjct: 473 HQLASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSV 532
Query: 709 AGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF-- 766
G+ Y++ +D +SRFTW Y LK KS+ + F+ FQ +VE + G KIK Q DGG EF
Sbjct: 533 QGFRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFIS 592
Query: 767 KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTA 826
L H GI ++CP+T QNG ERKHRHIVE GLS++ + +P YW +F TA
Sbjct: 593 SQFLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTA 652
Query: 827 TFLINRLPTPVL-GNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVF 885
F+IN LPT L N SPY KL+ +Y LRVFG ACYP LR Y S+K RS +CVF
Sbjct: 653 NFVINLLPTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVF 712
Query: 886 LGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVISY 944
LGY+ +KGY+CL GRIYIS+ V F+E P+ +++S P
Sbjct: 713 LGYNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQDK------------- 759
Query: 945 VPSLQQPIPSPHHSHPT 961
P L+ S HH PT
Sbjct: 760 TPLLEAWFKSFHHVTPT 776
Score = 101 bits (251), Expect = 4e-21
Identities = 83/337 (24%), Positives = 140/337 (40%), Gaps = 50/337 (14%)
Query: 20 IPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPP--RFLSDEDR 77
+P L+ ++ V + L+ N++ WK E + L F+ P R ++ +
Sbjct: 6 VPPLNISNCV---TVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNV 62
Query: 78 ANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQS 137
+ NP F W Q D + +WLL S + +L VVNC S Q+W + + F+ S ++
Sbjct: 63 TSEEPNPEFYTWHQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRL 122
Query: 138 TQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHL-M 196
+L+ L+++ K +LK +K I + L S+G PV + + + +GL +Y +
Sbjct: 123 FELQRRLQTLEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEPIKT 182
Query: 197 TIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAPPLV 256
TI S + S+S E +A + R RL+ +
Sbjct: 183 TIENSVDSNPSLSLDE---VASKLRGYDDRLQSYVTE----------------------- 216
Query: 257 PSQSPAPPQAPPPVAIAPPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGR 316
P P VA + T SD Y + + + RS+ + ++ RGR
Sbjct: 217 -------PTISPHVA----------FNVTHSDSGYYHNNNRGKGRSNSGSGKSSFSTRGR 259
Query: 317 GGRGSYN-NRGRGGDRSSVQCQICHKYGHDASVCYYR 352
G + G S + CQIC K GH A C++R
Sbjct: 260 GFHQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHR 296
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 322 bits (826), Expect = 8e-88
Identities = 185/465 (39%), Positives = 252/465 (53%), Gaps = 40/465 (8%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
WHPDS AT HVT + + G+D V +G+G LPI GS + S + + L
Sbjct: 322 WHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKS---SNGKIPL 378
Query: 529 KNLLLVPNITKNLVSVSKFAQDN--GVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSF 586
+L+VPNI K+L+SVSK D GVYF+ + C ++ Q T K + G +GLY
Sbjct: 379 NEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKV-CIIDLQ-TQKVVTTGPR-RNGLYVL 435
Query: 587 DGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYE 646
+ V+ +N ++WH RLGH + +
Sbjct: 436 ENQE-----------------------------FVALYSNRQCAATEEVWHHRLGHANSK 466
Query: 647 TLQSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIE 706
LQ + I + +C C + KS RLP S + PL+ I DLWGP+ +
Sbjct: 467 ALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVV 526
Query: 707 SSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF 766
S+ G Y+ VD +SR++W Y L KSE +VFI FQ +VE + KIK Q+DGG EF
Sbjct: 527 SNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEF 586
Query: 767 --KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
L H + GI HR++CP+T QNG ERKHRH+VE GLS+L ++ P +W +F
Sbjct: 587 VSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFF 646
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECV 884
TA ++INRLP+ VL NLSPY LF DY LRVFGSACYP LRP +K RS +CV
Sbjct: 647 TANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCV 706
Query: 885 FLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFP 928
FLGY+S +KGY+C G++YIS++V FNE + P+ + S P
Sbjct: 707 FLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFKEKYQSLVP 751
Score = 114 bits (284), Expect = 6e-25
Identities = 91/339 (26%), Positives = 140/339 (40%), Gaps = 44/339 (12%)
Query: 16 ISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPP--RFLS 73
++ + P + + + LKL DSN+L WK E ++ + +L F+ P R +
Sbjct: 1 MATSYPFPDNVHVTSSVTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVV 60
Query: 74 DEDRANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHS 133
+ + + NP + W D + +WL +LS VL V N S QIW ++ + F+ S
Sbjct: 61 NGEVTSEEPNPLYESWFCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSS 120
Query: 134 LAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYS 193
+A+ LR L+ ++K K S Y + K+I +AL SIG PV + +GL DY
Sbjct: 121 VAREFSLRQNLQLLSKKEKPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGLGRDYD 180
Query: 194 HLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAP 253
+ T++ S +V + +L+ + AAS
Sbjct: 181 PITTVIQSSLSKLPTPTFNDVVSEVQGFDSKLQSYEEAAS-------------------- 220
Query: 254 PLVPSQSPAPPQAPPPVAIAPPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGGYNN 313
P +A I R+ S Y R RS N+ RGGY+
Sbjct: 221 ------------VTPHLAF--------NIERSESGSPQYNPNQKGRGRSGQNKGRGGYST 260
Query: 314 RGRGGRGSYNNRGRGGDRSSVQCQICHKYGHDASVCYYR 352
RGRG ++ G R CQIC + GH A CY R
Sbjct: 261 RGRGFSQHQSSPQVSGPRP--VCQICGRTGHTALKCYNR 297
>At4g10690 retrotransposon like protein
Length = 1515
Score = 321 bits (823), Expect = 2e-87
Identities = 207/551 (37%), Positives = 287/551 (51%), Gaps = 61/551 (11%)
Query: 392 YSPFRGFQPYGAPSPFGMSFPNSGFGSGSPYASGGMFTPP-----GYG---------FGS 437
Y FRG G+ S G F + FGSGS SG P YG F
Sbjct: 242 YGNFRG---RGSYSSRGRGF-HQQFGSGSNNGSGNGSKPTCQICRKYGHSAFKCYTRFEE 297
Query: 438 GYGFGLPPRAPARHIRAPQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQ 497
Y LP P + A + ++ W PDS AT H+T+ + + + +G+D
Sbjct: 298 NY---LPEDLP--NAFAAMRVSDQNQASSHEWLPDSAATAHITNTTDGLQNSQTYSGDDS 352
Query: 498 VYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEF 557
V +GNG LPI IG+ + +Q TL L+++L+ P ITK+L+SVSK D F F
Sbjct: 353 VIVGNGDFLPITHIGTIPLNI---SQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTF 409
Query: 558 HPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAV 617
+ + T + L +G+ GLY L VP + +S + +S
Sbjct: 410 DSDSVVIKDKRTQQLLTQGNKHK-GLYV------------LKDVPFQTYYSTRQQSSDD- 455
Query: 618 NTIVSTSNNVPSPTAYDLWHSRLGHPHYETLQSALTTCKISVPHKSKYTICHSCCVAKSH 677
++WH RLGHP+ E LQ + T K V +K+ +C +C + K
Sbjct: 456 ----------------EVWHQRLGHPNKEVLQHLIKT-KAIVVNKTSSNMCEACQMGKVC 498
Query: 678 RLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETS 737
RLP AS + + PLE I DLWGPA + S+ G+ Y++ +D +SRFTW Y LK KS+
Sbjct: 499 RLPFVASEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFF 558
Query: 738 TVFIQFQAMVELKFGLKIKSVQTDGGTEF--KPLLPHFLKLGITHRLTCPHTHHQNGSVE 795
+VF+ FQ +VE ++ KI Q DGG EF + H GI ++CPHT QNG E
Sbjct: 559 SVFVLFQQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAE 618
Query: 796 RKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLG-NLSPYHKLFKVPADY 854
R+HR++ E GLSL+ + +P W AF T+ FL N LP+ L N SPY L P Y
Sbjct: 619 RRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVY 678
Query: 855 KILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFN 913
LRVFGSACYP+LRPY +K +S CVFLGY++ +KGY+CL G++YI + V F+
Sbjct: 679 TALRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFD 738
Query: 914 EFKFPYSTLFS 924
E KFPYS ++S
Sbjct: 739 ERKFPYSDIYS 749
Score = 93.2 bits (230), Expect = 1e-18
Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 59/290 (20%)
Query: 72 LSDEDRANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHA 131
++ +D + N FL W + D + W+ SLS L V+ + ++W + F+
Sbjct: 55 VTKDDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNR 114
Query: 132 HSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLRED 191
S + L+ L + +K K YL +K+I + L SIG PVT +E + + +GL ++
Sbjct: 115 FSTTRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGVLNGLGKE 174
Query: 192 YSHLMTIVTSR----EFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQ 247
Y + T++ PC + + +L + A+S
Sbjct: 175 YESIATVIEHSLDVYPGPCFDDVVYKLTTFDD------KLSTYTANS------------- 215
Query: 248 STPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRD 307
+ P +A ++ +Y SR ++ R R + R
Sbjct: 216 -----------------EVTPHLAF---YTDKSYSSRGNNNSRG--------GRYGNFRG 247
Query: 308 RGGYNNRGRG-----GRGSYNNRGRGGDRSSVQCQICHKYGHDASVCYYR 352
RG Y++RGRG G GS N G G S CQIC KYGH A CY R
Sbjct: 248 RGSYSSRGRGFHQQFGSGSNNGSGNG---SKPTCQICRKYGHSAFKCYTR 294
>At2g14930 pseudogene
Length = 1149
Score = 318 bits (815), Expect = 2e-86
Identities = 183/469 (39%), Positives = 252/469 (53%), Gaps = 38/469 (8%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
W PDS AT H+T+++S + GND V +G LPI IGSA+ S T L L
Sbjct: 314 WVPDSAATAHITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLPS---TSGNLPL 370
Query: 529 KNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDG 588
K++L+ PNI K+L+SVSK +D F F V + TCK L +GS S+GLY +
Sbjct: 371 KDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKDKATCKVLTKGSSTSEGLYKLEN 430
Query: 589 MHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYETL 648
F+ + + +T ++WH RLGHP+ + L
Sbjct: 431 PKFQMFY--------------------STRQVKATD---------EVWHMRLGHPNPQVL 461
Query: 649 QSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESS 708
Q I + +KS +C SC + KS RLP AS + + PLE + DLWGPA + S
Sbjct: 462 QLLANKKAIQI-NKSTSKMCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSI 520
Query: 709 AGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF-- 766
G+ Y++ +D SRF W Y LK KS+ ++F++FQ+ VE KI + Q+DGG EF
Sbjct: 521 QGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGEFTS 580
Query: 767 KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTA 826
L H + GI H ++CPHT QNG ERKHR + E GL+L+ + P +W AF TA
Sbjct: 581 NRFLQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTA 640
Query: 827 TFLINRLPTPVL-GNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVF 885
FL N LPT L + +PY LF DY LR FG AC+P LR Y +K RS +C+F
Sbjct: 641 NFLSNLLPTSALDSSTTPYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIF 700
Query: 886 LGYSSSHKGYKC-LASDGRIYISKDVQFNEFKFPY-STLFSSEFPASNP 932
LGY+ +KGY+C R+Y+S+ V F+E FP+ T S + P+ P
Sbjct: 701 LGYTEKYKGYRCFFPPTNRVYLSRHVLFDESSFPFIDTYTSLQHPSPTP 749
Score = 74.3 bits (181), Expect = 5e-13
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 10/184 (5%)
Query: 17 SVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLS--- 73
S+ + L S ++ + + +KL D N++ WK E + L F+ P +S
Sbjct: 4 SMDLYTLPSLNISNCVTVKLTDRNYILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGPQ 63
Query: 74 DEDRANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHS 133
D ++ NP + W + D + +S +L VV + S ++W + F+ S
Sbjct: 64 DAGVTEAIPNPDYQAWFRSDQVV-------MSEDILSVVVGSKTSHEVWMNLAKHFNRIS 116
Query: 134 LAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYS 193
++ +L+ L S++K K +YL+ +K+I + L S+G PV + + A+ GL +Y
Sbjct: 117 SSRIFELQRRLHSLSKEGKTMEEYLRYLKTICDQLASVGSPVAEKMKIFAMVHGLTREYE 176
Query: 194 HLMT 197
L+T
Sbjct: 177 PLIT 180
Score = 44.3 bits (103), Expect = 6e-04
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 15/60 (25%)
Query: 305 NRDRGGYNNRGRGGRGSYNNRGRG------GDRSSVQ------CQICHKYGHDASVCYYR 352
NR RGG NNRG+G +++ RGRG SSV CQIC K GH A C++R
Sbjct: 229 NRGRGGRNNRGKG---NFSTRGRGFQQQFSSSSSSVSASEKPMCQICGKRGHYALQCWHR 285
>At4g28900 putative protein
Length = 1415
Score = 306 bits (784), Expect = 6e-83
Identities = 182/473 (38%), Positives = 257/473 (53%), Gaps = 38/473 (8%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
W DSGAT H+T+ S + +G D V +GN LPI IGSA +S Q L L
Sbjct: 293 WVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTS---NQGNLPL 349
Query: 529 KNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDG 588
+++L+ PNITK+L+SVSK D EF V + T + L +G+
Sbjct: 350 RDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTR---------- 399
Query: 589 MHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYETL 648
H DL + L P ++ ++ T+ ++WH RLGHP+ + L
Sbjct: 400 ------HNDL--------YLLENPK------FMACYSSRQQATSDEVWHMRLGHPNQDVL 439
Query: 649 QSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESS 708
Q L K V K+ +++C +C + K +LP ++S + + LE + DLWGPA + SS
Sbjct: 440 QQLLRN-KAIVISKTSHSLCDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSS 498
Query: 709 AGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF-- 766
G+ Y++ +D +SRFTW Y L+ KS+ +VF+ FQ MVE + KI S Q DGG EF
Sbjct: 499 QGFRYYVIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKMVENQCQQKIASFQCDGGGEFIS 558
Query: 767 KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTA 826
+ H + GI ++CP+T QNG ERKHRHI E G S++ +P W AF T+
Sbjct: 559 NQFVSHLAECGIRQLISCPYTPQQNGIAERKHRHITELGSSMMFQGKVPQFLWVEAFYTS 618
Query: 827 TFLINRLPTPVL-GNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVF 885
FL N LP+ VL SPY L Y LRVFG ACYP+LRPY S+K +S CVF
Sbjct: 619 NFLCNLLPSSVLKDQKSPYEVLMGKAPVYTSLRVFGCACYPNLRPYASNKFDPKSLLCVF 678
Query: 886 LGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSS 937
GY+ +KGYKC G+IYI++ V F+E KF +S ++S + +N + VS+
Sbjct: 679 TGYNEKYKGYKCFHPPTGKIYINRHVLFDESKFLFSDIYSDKVSGTNSTLVSA 731
Score = 94.7 bits (234), Expect = 4e-19
Identities = 53/178 (29%), Positives = 89/178 (49%), Gaps = 2/178 (1%)
Query: 24 SSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIP--PRFLSDEDRANSV 81
S+ H + LKL +N+L WK E + RL F+ P R + + D+
Sbjct: 9 SALCFSHYVTLKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVTEA 68
Query: 82 ENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLR 141
NP FL W Q+D + WLL SLS L +V S ++W ++ ++ S ++ + L+
Sbjct: 69 TNPDFLTWVQNDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSASRKSDLQ 128
Query: 142 SELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHLMTIV 199
L ++K K+ +YL +K I + L SIG PV E + + +GL ++Y + T++
Sbjct: 129 RRLNPVSKNEKSMLEYLNCVKQICDQLDSIGCPVPENEKIFGVLNGLGQEYMLVSTMI 186
Score = 41.6 bits (96), Expect = 0.004
Identities = 19/52 (36%), Positives = 26/52 (49%)
Query: 301 RSDDNRDRGGYNNRGRGGRGSYNNRGRGGDRSSVQCQICHKYGHDASVCYYR 352
+S NR R Y +GRG ++ + CQIC+KYGH A C+ R
Sbjct: 215 QSGGNRGRNNYTTKGRGFPQQISSGSPSDSGTRPTCQICNKYGHSAYKCWKR 266
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 265 bits (678), Expect = 1e-70
Identities = 191/605 (31%), Positives = 273/605 (44%), Gaps = 60/605 (9%)
Query: 330 DRSSVQCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQ 389
D+S++ C C++ GH+ + C+ P NQ + G GSS G
Sbjct: 254 DKSTLFCTHCNRKGHEVTQCFLVHGYPDWWLEQNPQ-ENQPSTRGRGSNGRGSSSG---- 308
Query: 390 FGYSPFRGFQPYGAPSPFGMSFPNSGFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAPA 449
RG AP+ G N+ + +P SG G+ L A
Sbjct: 309 ------RGGNRSSAPTTRGRGRANNA-QAAAPTVSGD---------GNDQIAQLISLLQA 352
Query: 450 RHIRAPQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQ 509
+ + L S + L + D+GA+HH+T D S + D +T + P
Sbjct: 353 QRPSSSSERL-SGNTCLTDGVIDTGASHHMTGDCSILVDVFDITPSPVTK-------PDG 404
Query: 510 SIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDT 569
A+ + + L ++L VP+ L+SVSK + F C + +
Sbjct: 405 KASQATKCGTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQTSSIAIFTDTFCFLQDR-F 463
Query: 570 CKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPS 629
+TL+ +G+Y F G+ + HK SS F++S
Sbjct: 464 LRTLIGAGEEREGVYYFTGVLAPRVHK------ASSDFAISG------------------ 499
Query: 630 PTAYDLWHSRLGHPHYETLQSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYT 689
DLWH RLGHP L S L C S K C +C +K R S+
Sbjct: 500 ----DLWHRRLGHPSTSVLLS-LPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNNKTM 554
Query: 690 APLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL 749
LI D+WGP S+ G YFLT VD +SR W YL+ K+E S + F AM E
Sbjct: 555 ECFSLIHGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSER 614
Query: 750 KFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLL 809
+FG ++K+ +TD GTEF L P+F GI H+ +C T QNG VERKHRHI+ + L
Sbjct: 615 QFGKQVKAFRTDNGTEFMCLTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACL 674
Query: 810 ACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLR 869
N+P +W + LTAT LINR P+ VL +PY LF Y +LR FG CY H+R
Sbjct: 675 FQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDMLRSFGCLCYAHIR 734
Query: 870 PYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFP 928
P N K + RS++CVF+GY K ++ G+I+ S+DV+F+E +PY+T S P
Sbjct: 735 PRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVP 794
Query: 929 ASNPS 933
P+
Sbjct: 795 LPPPT 799
Score = 48.5 bits (114), Expect = 3e-05
Identities = 58/321 (18%), Positives = 120/321 (37%), Gaps = 51/321 (15%)
Query: 27 SLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSVENPAF 86
+L+ ++LK ++N+ W + ++ +R + F+ D +P
Sbjct: 32 ALISSVVLK--ENNYAEWSEELQNFLRAKQKLGFI------------DGSIPKPAADPEL 77
Query: 87 LVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRS 146
+W +S + W+ +S+ P++ TV + Q+WE + F + + T L+ E+ +
Sbjct: 78 SLWIAINSMIVGWIRTSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTLLKDEIAA 137
Query: 147 ITKGSKNTSDYLKRIKSIVNAL-----------ISIGDPVTYRE--HLEAIFDGLREDYS 193
T+ + Y R+ + L + D RE + GL +S
Sbjct: 138 CTQDGQPVLAYYGRLIKLWEELQNYKSGRECKCEAASDIEKEREDDRVHKFLLGLDSRFS 197
Query: 194 HLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAP 253
+ + +T E + Q + V+ E L+ R + + F Q++ P+ ++
Sbjct: 198 SIRSSITDIEPLPDLYQVYSRVVREEQNLNASRTKDVVKTEAIGFSVQSSTTPRFRDKS- 256
Query: 254 PLVPSQSPAPPQAPPPVAIAPPSSEVNYISRTGSD-DRAYEDRDDDRSRSDDNRDRGGYN 312
+ + +R G + + + + N +
Sbjct: 257 ----------------------TLFCTHCNRKGHEVTQCFLVHGYPDWWLEQNPQENQPS 294
Query: 313 NRGRGGRGSYNNRGRGGDRSS 333
RGRG G ++ GRGG+RSS
Sbjct: 295 TRGRGSNGRGSSSGRGGNRSS 315
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 264 bits (675), Expect = 3e-70
Identities = 202/653 (30%), Positives = 290/653 (43%), Gaps = 85/653 (13%)
Query: 328 GGDRSSVQCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQAPAPVAP----TFGFGSS 383
G ++ C C++ GH A CY + + P + +++ P P A T
Sbjct: 305 GPNKGRPTCSFCNRVGHIAERCYKK-HGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKM 363
Query: 384 FGMMPQFG--YSPFR----------GFQPYGAPSPFGMSFPNSGFGSGSPYASGGMFTPP 431
G + +SP + QP SP S + S S SG +F+P
Sbjct: 364 TGQLETLAGNFSPDQIQNLIALFSSQLQPQ-IVSPQTASSQHEASSSQSVAPSGILFSPS 422
Query: 432 GYGFGSGYGFGLPPRAPARHIRAPQTMLASAPSTLGN--WHPDSGATHHVTHDASAISDG 489
Y F +LA + ++L + W DSGATHHV+HD
Sbjct: 423 TYCFIG--------------------ILAVSHNSLSSDTWVIDSGATHHVSHDRKLFQT- 461
Query: 490 MSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQ 549
+ + V + G + I +G+ + I +L+N+L +P NL+S+S
Sbjct: 462 LDTSIVSFVNLPTGPNVRISGVGTVLINKDI------ILQNVLFIPEFRLNLISISSLTT 515
Query: 550 DNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSL 609
D G F P C + QD K L G +G N + Q P S
Sbjct: 516 DLGTRVIFDPSCCQI--QDLTKGLTLG----------EGKRIGNLYVLDTQSPAIS---- 559
Query: 610 SKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYETLQSALTTCKISVPHKSKYTICH 669
VN +V S +WH RLGHP + L S + K CH
Sbjct: 560 -------VNAVVDVS----------VWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCH 602
Query: 670 SCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYL 729
C +AK +L +++ + + EL+ D+WGP S+E+ GY YFLT VD SR TWIYL
Sbjct: 603 VCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYL 662
Query: 730 LKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHH 789
LK KS+ TVF F +VE ++ ++KSV++D E + GI +CP T
Sbjct: 663 LKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKEL-AFTEFYKAKGIVSFHSCPETPE 721
Query: 790 QNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFK 849
QN VERKH+HI+ +L+ +NM YW LTA FLINR P+ +L N +P+ L
Sbjct: 722 QNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTG 781
Query: 850 VPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCLASDGR-IYISK 908
DY L+ FG CY K RS+ CVFLGY KGYK L + ++IS+
Sbjct: 782 KLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISR 841
Query: 909 DVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPT 961
+V+F+E FP L SS+ A+ S V + + +S S+ +PSP S T
Sbjct: 842 NVEFHEELFP---LASSQQSATTASDVFTPMDPLSSGNSITSHLPSPQISPST 891
Score = 54.7 bits (130), Expect = 4e-07
Identities = 26/97 (26%), Positives = 56/97 (56%), Gaps = 3/97 (3%)
Query: 83 NPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRS 142
+P F +W + +S + +WLL+S+SP + +++ + IW + D F+ +L ++ L
Sbjct: 119 DPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQ 178
Query: 143 ELRSITKGSKNTSDYLKRIKSIVNALIS---IGDPVT 176
E++ + +G+ + S+Y +K++ + L S + DP T
Sbjct: 179 EIQDLRQGTMSLSEYYTLLKTLWDQLDSTEALDDPCT 215
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 258 bits (660), Expect = 1e-68
Identities = 250/946 (26%), Positives = 388/946 (40%), Gaps = 164/946 (17%)
Query: 86 FLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELR 145
F +W + +S + +WLL+S+SP + +++ + IW + F+ +L +
Sbjct: 118 FRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPR--------- 168
Query: 146 SITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHLMTIVTSREFP 205
T + + I+ +S+ + Y L+ ++D L + + P
Sbjct: 169 --------TYNLTQEIQDFRQGTLSLSE---YYTRLKTLWDQLDS--------TEALDEP 209
Query: 206 CSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAPPLVPSQSPAPPQ 265
C+ +A M + +A ++ + A + + ++ P + Q
Sbjct: 210 CTCGKA--MRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQ 267
Query: 266 APPPVAIAPPSS-EVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGSYNN 324
+APP++ +V+ I+++ S D Y G N
Sbjct: 268 QSFSNVVAPPAAFQVSEITQSPSMDPTV-----------------CYVQNGP-------N 303
Query: 325 RGRGGDRSSVQCQICHKYGHDASVCYYR-GNSTSPATNSQPNMTNQAPAPVAPTFGFGSS 383
+GR C ++ GH A CY + G + Q P P+A S
Sbjct: 304 KGRP------ICSFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSE 357
Query: 384 FG--MMPQFGYSPFRGFQPYGAP-SPFGMSFPNSGFGSGSPYASGGM---FTPPGYGFGS 437
+ G Q + A S + P S + + S S + F+P Y F
Sbjct: 358 VNTSLESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSF-- 415
Query: 438 GYGFGLPPRAPARHIRAPQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQ 497
+ ARH + T W DSGATHHV+HD S S + +
Sbjct: 416 -----IGILTVARHTLSSAT-----------WVIDSGATHHVSHDRSLFS-SLDTSVLSA 458
Query: 498 VYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEF 557
V + G + I +G+ + I LLKN+L +P NL+S+S D G F
Sbjct: 459 VNLPTGPTVKISGVGTLKLNDDI------LLKNVLFIPEFRLNLISISSLTDDIGSRVIF 512
Query: 558 HPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFH-KDLPQVPVSSAFSLSKPASPA 616
C + QD K + G G +N + D+ +S
Sbjct: 513 DKNSCEI--QDLIKGRMLG----------QGRRVANLYLLDVGDQSIS------------ 548
Query: 617 VNTIVSTSNNVPSPTAYDLWHSRLGHPHYETLQSALTTCKISVPHKSKYT-ICHSCCVAK 675
VN +V S +WH RLGH + L A++ + HK+K + CH C +AK
Sbjct: 549 VNAVVDIS----------MWHRRLGHASLQRL-DAISDSLGTTRHKNKGSDFCHVCHLAK 597
Query: 676 SHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSE 735
+L S+ + +L+ D+WGP S+E+ GY YFLT VD SR TW+YLLK KSE
Sbjct: 598 QRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSE 657
Query: 736 TSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVE 795
TVF F VE ++ +K+K+V++D E K + + GI +CP T QN VE
Sbjct: 658 VLTVFPAFIQQVENQYKVKVKAVRSDNAPELK-FTSFYAEKGIVSFHSCPETPEQNSVVE 716
Query: 796 RKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYK 855
RKH+HI+ +L+ + +P S W LTA FLINR P+ +L N +PY L Y+
Sbjct: 717 RKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYE 776
Query: 856 ILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNE 914
LR FG CY P K RS+ C+FLGY S +KGYK + ++IS++VQF+E
Sbjct: 777 QLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHE 836
Query: 915 FKFPYSTLFSSE----------------------FPASNPSSVSSVIPVISYVPSLQQP- 951
FP + SE P+S PS +S + P IS + P
Sbjct: 837 EVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQISSQRVRKPPA 896
Query: 952 --------IPSPHHSHPTASHLLIQLIPCSH-CPIHQFIVLPLSQN 988
H +P +S + I SH C I+ +P+ N
Sbjct: 897 HLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTN 942
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 247 bits (630), Expect = 4e-65
Identities = 163/464 (35%), Positives = 225/464 (48%), Gaps = 45/464 (9%)
Query: 461 SAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPI 520
S LG+ D+GA+HH+T S +++ +++ + V +G+ S+G+ S
Sbjct: 376 SGKMKLGDVILDTGASHHMTGQLSLLTNIVTIP-SCSVGFADGRKTFAISMGTFKLSE-- 432
Query: 521 HTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGS 580
T+ L N+L VP + +L+SVSK + F C + + + +TL+
Sbjct: 433 ----TVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQDRFS-RTLIGTGEER 487
Query: 581 DGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRL 640
DG+Y ++ HK V T + LWH RL
Sbjct: 488 DGVYYLTDAATTTVHK------------------------------VDITTDHALWHQRL 517
Query: 641 GHPHYETLQSA--LTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFAD 698
GHP + L S + SV +S C C AK R SS T LI D
Sbjct: 518 GHPSFSVLSSLPLFSGSSCSVSSRS----CDVCFRAKQTREVFPDSSNKSTDCFSLIHCD 573
Query: 699 LWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSV 758
+WGP + SS G YFLT VD FSR W YLL KSE +V F A E +FG +K +
Sbjct: 574 VWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKII 633
Query: 759 QTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSY 818
++D GTEF L +F + GI H+ +C T QNG VERKHRHI+ +LL A++P +
Sbjct: 634 RSDNGTEFMCLSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKF 693
Query: 819 WDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSF 878
W A +TA +LINR P+ + LSPY L DY LRVFGSACY H + K
Sbjct: 694 WGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKPDYDQLRVFGSACYAHRVTRDKDKFGE 753
Query: 879 RSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYST 921
RS+ C+F+GY KG+K S +S+DV F E FPY+T
Sbjct: 754 RSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYAT 797
Score = 44.7 bits (104), Expect = 4e-04
Identities = 64/321 (19%), Positives = 121/321 (36%), Gaps = 60/321 (18%)
Query: 36 LDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSVENPAFLVWEQHDSA 95
L N+ W + ++ R F+ PP ++NP + W+ +S
Sbjct: 44 LTGDNYNEWSTKMLNALQAKRKTGFINGSISKPP-----------LDNPDYENWQAVNSM 92
Query: 96 LFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNTS 155
+ W+ +S+ P V TV + Q+W + F + Q++++L + + +
Sbjct: 93 IVGWIRASIEPKVKSTVTFICDAHQLWSELKQRFSVGNKVHVHQIKTQLAACRQDGQPVI 152
Query: 156 DYLKRIKSIVNALISIGDPVTY-------------------REHLEAIFDGLRED-YSHL 195
DY R+ + I P+T E + GL + + L
Sbjct: 153 DYYGRLCKLWEE-FQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGL 211
Query: 196 -MTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTPQAPP 254
T++ FP S+ + + V+ E RL +++R+ S+ FL + +
Sbjct: 212 SATLIAMDPFP-SLGEIYSRVVREEQRLASVQIREQQQSA-IGFLTRQSEVTADGRTDSS 269
Query: 255 LVPSQSPAPPQAPPPVAIAPPSSEVNYISRTGSDDR------AYEDRDDDRSRSDDNRDR 308
++ S+ S ++ R+G + + + D +R+ N
Sbjct: 270 IIKSRD--------------RSVLCSHCGRSGHEKKDCWQIVGFPDWWTERT----NGGG 311
Query: 309 GGYNNRGRGGRGS-YNNRGRG 328
G ++RGRGGR S NN GRG
Sbjct: 312 RGSSSRGRGGRSSGSNNSGRG 332
>At1g26990 polyprotein, putative
Length = 1436
Score = 243 bits (621), Expect = 5e-64
Identities = 170/516 (32%), Positives = 248/516 (47%), Gaps = 42/516 (8%)
Query: 465 TLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQT 524
+L W DSGA+HHVTH+ + + V + NG + I+ G I
Sbjct: 417 SLRAWVIDSGASHHVTHERN-LYHTYKALDRTFVRLPNGHTVKIEGTGF------IQLTD 469
Query: 525 TLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLY 584
L L N+L +P NL+SVS + F C + Q K L+ G G
Sbjct: 470 ALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMI--QALTKELMLGKGSQVG-- 525
Query: 585 SFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPH 644
++ N K L V S P +++ + S ++WH RLGHP
Sbjct: 526 ---NLYILNLDKSLVDVS-------SFPGKSVCSSVKNES---------EMWHKRLGHPS 566
Query: 645 Y---ETLQSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWG 701
+ +TL L K + S + CH C ++K LP + + + EL+ D WG
Sbjct: 567 FAKIDTLSDVLMLPKQKINKDSSH--CHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWG 624
Query: 702 PASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTD 761
P S+ + Y YFLT VD FSR TWIYLLK+KS+ TVF F MVE ++ K+ SV++D
Sbjct: 625 PFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSD 684
Query: 762 GGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDH 821
E K F K GI CP T QN VERKH+H++ +L+ + +P YW
Sbjct: 685 NAHELK-FNELFAKEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGD 743
Query: 822 AFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQ 881
LTA FLINRL +PV+ N +PY +L K DY L+ FG CY P + +K R++
Sbjct: 744 CVLTAVFLINRLLSPVINNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAK 803
Query: 882 ECVFLGYSSSHKGYKCLASDG-RIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIP 940
C+FLGY +KGYK L + + IS+ V F E FP+++ S+ A+ +P
Sbjct: 804 ACIFLGYPMGYKGYKLLDIETYSVSISRHVIFYEDIFPFAS--SNITDAAKDFFPHIYLP 861
Query: 941 VIS---YVPSLQQPIPSPHHSHPTASHLLIQLIPCS 973
+ ++P +Q +PH+ ++S + + P S
Sbjct: 862 APNNDEHLPLVQSSSDAPHNHDESSSMIFVPSEPKS 897
>At1g70010 hypothetical protein
Length = 1315
Score = 242 bits (618), Expect = 1e-63
Identities = 156/474 (32%), Positives = 226/474 (46%), Gaps = 47/474 (9%)
Query: 507 PIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNS 566
P S S +H L+L ++L +P NL+SVS + G F C +
Sbjct: 304 PSSSSTVCPISGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVL-- 361
Query: 567 QDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNN 626
QD + L+ G K + + + SLS P + + T+ S
Sbjct: 362 QDATRELMVG-----------------MGKQVANLYIVDLDSLSHPGTDSSITVASV--- 401
Query: 627 VPSPTAYDLWHSRLGHPHYETLQSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASST 686
T++DLWH RLGHP + LQ + + C C ++K LP + +
Sbjct: 402 ----TSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNN 457
Query: 687 LYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAM 746
+ P +LI D WGP S+++ GY YFLT VD +SR TW+YLL+ KS+ TV F M
Sbjct: 458 KSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTM 517
Query: 747 VELKFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGL 806
VE +F IK V++D E + GI +CP T QN VERKH+HI+
Sbjct: 518 VENQFETTIKGVRSDNAPELN-FTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVAR 576
Query: 807 SLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYP 866
SL +++P SYW LTA +LINRLP P+L + P+ L K Y ++VFG CY
Sbjct: 577 SLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYA 636
Query: 867 HLRPYNSSKLSFRSQECVFLGYSSSHKGYKCLASDGR-IYISKDVQFNEFKFPY--STLF 923
P + K S R++ C F+GY S KGYK L + I +S+ V F+E FP+ S L
Sbjct: 637 STSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLS 696
Query: 924 SSE---FPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTASHLLIQLIPCSH 974
E FP NP+ P +Q+ S H +P+ S ++++P ++
Sbjct: 697 QEEQNFFPDLNPT------------PPMQR--QSSDHVNPSDSSSSVEILPSAN 736
Score = 48.5 bits (114), Expect = 3e-05
Identities = 23/90 (25%), Positives = 51/90 (56%)
Query: 82 ENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLR 141
++P +W + +S + +WLL+S+S + +++ + IW+ + FH SL + +LR
Sbjct: 24 DDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAIWKDLYTRFHKSSLPRLYKLR 83
Query: 142 SELRSITKGSKNTSDYLKRIKSIVNALISI 171
++ S+ +G+ + S Y R +++ L S+
Sbjct: 84 QQIHSLRQGNLDLSSYHTRTQTLWEELTSL 113
>At1g36620 hypothetical protein
Length = 1152
Score = 241 bits (616), Expect = 2e-63
Identities = 155/475 (32%), Positives = 235/475 (48%), Gaps = 40/475 (8%)
Query: 472 DSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNL 531
DSGA+HH+T +++ + + V LP A+ + + L ++
Sbjct: 386 DSGASHHMTGFLDLLTEIYEIPHSVVV-------LPNAKHTIATKKGTLILGANMKLTHV 438
Query: 532 LLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHS 591
L VP+++ L+SV++ ++ + F C + + T K L+ S+G+Y
Sbjct: 439 LFVPDLSCTLISVARLLRELHCFAIFTDKVCVIQDR-TSKMLIGVGTESNGVY------- 490
Query: 592 SNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYETLQSA 651
H +V +SA N V T LWH RLGHP + L S
Sbjct: 491 ---HLQRAEVVATSA------------------NVVKWKTNKALWHMRLGHPSSKVLSSV 529
Query: 652 LTTCK-ISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAG 710
L + + TIC C AK R S S I D+WGP SS G
Sbjct: 530 LPSLEDFDSCSSDLKTICDVCVRAKQTRASFSESFNKAEECFSFIHYDVWGPYKHASSCG 589
Query: 711 YSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLL 770
YFLT VD SR WI+L+ KSE +++ QF AM +F ++K+V+++ GTEF L
Sbjct: 590 AHYFLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMSLK 649
Query: 771 PHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLI 830
+F + GI H+++C +TH QNG VERKHRHI+ SLL A +P S+W+ + LTA +LI
Sbjct: 650 SYFAERGIVHQISCVYTHQQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLI 709
Query: 831 NRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSS 890
NR PTP+L +PY L+ P Y LRVFGS C+ K R ++C+F+GY
Sbjct: 710 NRTPTPILDGKTPYKILYSQPPSYASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPH 769
Query: 891 SHKGYKCLASDGRI-YISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVISY 944
KG++ + +I ++S+DV F E FP++ + + +S + + S P++ Y
Sbjct: 770 GQKGWRIYDIESQIFFVSRDVVFQEDIFPFADKKNKDTFSSPAAVIPS--PILPY 822
Score = 37.7 bits (86), Expect = 0.053
Identities = 18/83 (21%), Positives = 44/83 (52%)
Query: 80 SVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQ 139
S ++P + W Q +S L WL +SL P V ++ ++ +WE++ + + ++ Q
Sbjct: 75 SSDSPDYPRWLQTNSMLVGWLYASLDPQVQKSISVVDNARVMWESLRTRYSVGNASRVHQ 134
Query: 140 LRSELRSITKGSKNTSDYLKRIK 162
L+ ++ + + + ++Y ++K
Sbjct: 135 LKYDIVACRQDGQTAANYFGKLK 157
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 234 bits (597), Expect = 3e-61
Identities = 148/465 (31%), Positives = 225/465 (47%), Gaps = 40/465 (8%)
Query: 475 ATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLV 534
A+HH+T + +S GM + + +G S G+ S L+LK++ V
Sbjct: 169 ASHHMTGNLELLS-GMRSMSPVLIILADGNKRVAVSEGTVRLGSH------LILKSVFYV 221
Query: 535 PNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNF 594
+ +L+SV + +N + H V T + + +G + F GM ++
Sbjct: 222 KELESDLISVGQMMDENHCVVQLAD-HFLVIQDRTTRMVTGIGKRENGSFCFRGMENA-- 278
Query: 595 HKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYETLQSALTT 654
V TS P +DLWH RLGH + + + L
Sbjct: 279 ------------------------AAVHTSVKAP----FDLWHRRLGHAS-DKIVNLLPR 309
Query: 655 CKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYF 714
+S + +C +C AK R +LI D+WGP S +G YF
Sbjct: 310 ELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSMDSFQLIHCDVWGPYRTPSYSGARYF 369
Query: 715 LTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPHFL 774
LT VD +SR W+YL+ KSET F A+VE +F +IK+V++D GTEF + +FL
Sbjct: 370 LTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQFDTEIKTVRSDNGTEFLCMREYFL 429
Query: 775 KLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLP 834
GI H +C T HQNG VERKHRHI+ +L + +P +W L+A +LINR P
Sbjct: 430 HKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTP 489
Query: 835 TPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKG 894
+ +L SPY L+K Y LRVFGS CY H + + K + RS+ CVF+GY KG
Sbjct: 490 SMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKG 549
Query: 895 YKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSV 938
++ + + ++S+DV F E +FPYS + + F +S+ + +++V
Sbjct: 550 WRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNRFTSSHKAFLAAV 594
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 228 bits (581), Expect = 2e-59
Identities = 127/299 (42%), Positives = 165/299 (54%), Gaps = 7/299 (2%)
Query: 635 LWHSRLGHPHYETLQS--ALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPL 692
LWH RLGHP + L S LT+ +SV +S C C AK R S+
Sbjct: 90 LWHQRLGHPSFSVLSSLPVLTSSSLSVGSRS----CDVCFRAKQTREVFPVSTNKSIECF 145
Query: 693 ELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFG 752
LI D+WGP + SS G YFLT VD FSR W YLL KSE TV F E +FG
Sbjct: 146 SLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEKQFG 205
Query: 753 LKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACA 812
+K +++D GTEF L +F + GI H+ +C T QNG VERKHRHI+ ++L A
Sbjct: 206 KSVKVLRSDNGTEFMCLASYFREHGIVHQTSCVGTPQQNGRVERKHRHILNVARAILFQA 265
Query: 813 NMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN 872
++P +W A LTA +LINR PT + LSPY L +Y+ LRVFGSACY H +
Sbjct: 266 SLPIQFWGEAVLTAAYLINRTPTSLHNGLSPYEILHNSKPNYEHLRVFGSACYVHRASRD 325
Query: 873 SSKLSFRSQECVFLGYSSSHKGYKCLASDGRIY-ISKDVQFNEFKFPYSTLFSSEFPAS 930
K RS+ CVF+GY + KG+K + + + +S+DV F E FPY+ + AS
Sbjct: 326 KDKFGERSRLCVFIGYPFAQKGWKVFDMEKKEFLVSRDVVFREDVFPYAATNTDHVSAS 384
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.142 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,564,985
Number of Sequences: 26719
Number of extensions: 1629937
Number of successful extensions: 14138
Number of sequences better than 10.0: 366
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 8912
Number of HSP's gapped (non-prelim): 2938
length of query: 1571
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1458
effective length of database: 8,299,349
effective search space: 12100450842
effective search space used: 12100450842
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0079b.1