Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.9
         (351 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g13850 glycine-rich RNA-binding protein AtGRP2 - like               45  6e-05
At5g04280 RNA-binding protein-like                                     44  1e-04
At4g16290 FCA delta protein                                            43  2e-04
At4g16280 FCA gamma protein                                            43  2e-04
At3g10400 hypothetical protein                                         43  3e-04
At2g18510 putative spliceosome associated protein                      43  3e-04
At3g19130 nuclear acid binding protein, putative                       42  4e-04
At2g36660 putative poly(A) binding protein                             42  4e-04
At1g58470 unknown protein                                              42  4e-04
At3g11400 eukaryotic translation initiation factor 3 subunit lik...    42  7e-04
At2g37510 putative RNA-binding protein                                 42  7e-04
At1g13690 AtE1 (atE1)                                                  42  7e-04
At2g22100 putative RNA-binding protein                                 41  9e-04
At4g39260 glycine-rich protein (clone AtGRP8)                          40  0.001
At1g55310 Serine/arginine-rich protein                                 40  0.001
At1g11650 putative DNA binding protein                                 40  0.001
At5g19030 unknown protein                                              40  0.002
At1g47500 unknown protein                                              40  0.002
At5g47320 40S ribosomal protein S19                                    40  0.002
At5g10800 putative protein                                             40  0.002

>At4g13850 glycine-rich RNA-binding protein AtGRP2 - like
          Length = 158

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 26/76 (34%), Positives = 36/76 (47%)

Query: 28  RLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRS 87
           +LF+ GL   T  + +R  F  FG VV   V    +  R   FGFV F  +    AA+  
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

Query: 88  LHGTRLNSFFLSINPA 103
           + G  LN   + +NPA
Sbjct: 96  MDGKELNGRHIRVNPA 111


>At5g04280 RNA-binding protein-like
          Length = 310

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 23/81 (28%), Positives = 38/81 (46%)

Query: 23  AEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGI 82
           A+E  R+FV GL  +     + + F RFG ++   +       R   FGF+ F  +R   
Sbjct: 3   AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62

Query: 83  AAMRSLHGTRLNSFFLSINPA 103
            ++R +HG       +S+N A
Sbjct: 63  ESIREMHGRDFGDRVISVNRA 83


>At4g16290 FCA delta protein
          Length = 533

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 42/79 (52%), Gaps = 1/79 (1%)

Query: 13  RWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGF 72
           R++  ER  +     +LFV  L++     +V ++F +FG V  V++ +   R  R   GF
Sbjct: 197 RYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR-GCGF 255

Query: 73  VLFQSKRDGIAAMRSLHGT 91
           V + SK   +AA+  L+GT
Sbjct: 256 VKYSSKETAMAAIDGLNGT 274



 Score = 37.4 bits (85), Expect = 0.012
 Identities = 18/63 (28%), Positives = 35/63 (54%)

Query: 27  IRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMR 86
           ++LFV  + R     ++R  FE+ G V+ V + K  +  +++   FV + + +D   A+R
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179

Query: 87  SLH 89
           +LH
Sbjct: 180 ALH 182


>At4g16280 FCA gamma protein
          Length = 747

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 42/79 (52%), Gaps = 1/79 (1%)

Query: 13  RWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGF 72
           R++  ER  +     +LFV  L++     +V ++F +FG V  V++ +   R  R   GF
Sbjct: 197 RYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR-GCGF 255

Query: 73  VLFQSKRDGIAAMRSLHGT 91
           V + SK   +AA+  L+GT
Sbjct: 256 VKYSSKETAMAAIDGLNGT 274



 Score = 37.4 bits (85), Expect = 0.012
 Identities = 18/63 (28%), Positives = 35/63 (54%)

Query: 27  IRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMR 86
           ++LFV  + R     ++R  FE+ G V+ V + K  +  +++   FV + + +D   A+R
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179

Query: 87  SLH 89
           +LH
Sbjct: 180 ALH 182


>At3g10400 hypothetical protein
          Length = 261

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 33/111 (29%), Positives = 46/111 (40%), Gaps = 13/111 (11%)

Query: 6   SARAPPPRWSCHERSEVAEENI-------------RLFVDGLDRDTKHSQVRKLFERFGT 52
           S  APPP    H+ S  A+ +               L+V  LD    +S +  LF  FG 
Sbjct: 23  SVAAPPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGK 82

Query: 53  VVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSLHGTRLNSFFLSINPA 103
           V  V V K     +     FVL+ S+ D   A RS+    LN   L+++ A
Sbjct: 83  VARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133


>At2g18510 putative spliceosome associated protein
          Length = 363

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 46/86 (52%)

Query: 18  ERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQS 77
           + S    ++  ++V GLD       + +LF + G VV+V+VPK       + +GF+ ++S
Sbjct: 16  QHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRS 75

Query: 78  KRDGIAAMRSLHGTRLNSFFLSINPA 103
           + D   A++ L+  +L+   + +N A
Sbjct: 76  EEDADYAIKVLNMIKLHGKPIRVNKA 101



 Score = 30.0 bits (66), Expect = 2.0
 Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 5/84 (5%)

Query: 29  LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIK---RVRREKFGFVLFQSKRDGIAAM 85
           LF+  LD D     +   F  FG + S   PK ++         FGF+ + S     AA+
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIAS--NPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171

Query: 86  RSLHGTRLNSFFLSINPARFVDRK 109
            S+ G  L++  ++++ A   D K
Sbjct: 172 ESMTGQYLSNRQITVSYAYKKDTK 195


>At3g19130 nuclear acid binding protein, putative
          Length = 435

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 32/131 (24%), Positives = 59/131 (44%), Gaps = 20/131 (15%)

Query: 19  RSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSK 78
           +S+    N  +FV G+D D     +R+ F +FG VVSV +P        +  GFV F  +
Sbjct: 313 QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADR 366

Query: 79  RDGIAAMRSLHGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIRQEWRIKHRV 138
           +    A+ SL+GT +    + ++  R  ++++              R    Q+W   +  
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRLSWGRSPNKQW--------------RGDSGQQWNGGYSR 412

Query: 139 GAPFSGTGGFS 149
           G  ++  GG++
Sbjct: 413 GHGYNNGGGYA 423


>At2g36660 putative poly(A) binding protein
          Length = 609

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 25/87 (28%), Positives = 44/87 (49%), Gaps = 1/87 (1%)

Query: 18  ERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQS 77
           +R +  E+   L++  LD D     +R+ F  FG +VS+ + K   R+ R  + FV F +
Sbjct: 192 DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCR-GYAFVNFDN 250

Query: 78  KRDGIAAMRSLHGTRLNSFFLSINPAR 104
             D   A  +++GT+  S  L +  A+
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQ 277



 Score = 35.4 bits (80), Expect = 0.047
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 17  HERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQ 76
           HE  ++  +   ++V  ++      ++RK F + GT+ S  +    ++ + + FGFV F 
Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKL-MCDEKGKSKGFGFVCFS 352

Query: 77  SKRDGIAAMRSLHG 90
           +  + I A+++ HG
Sbjct: 353 TPEEAIDAVKTFHG 366



 Score = 34.3 bits (77), Expect = 0.10
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 1   MRPTGSARAPPPRWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPK 60
           +R   S RAP  R     R+ V      +FV  L     ++ ++ +F++FG +VS  V  
Sbjct: 95  IRVMWSVRAPDAR-----RNGVGN----VFVKNLPESVTNAVLQDMFKKFGNIVSCKV-A 144

Query: 61  TIKRVRREKFGFVLFQSKRDGIAAMRSLHGT 91
           T++  +   +GFV F+ +    AA+++L+ T
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNST 175


>At1g58470 unknown protein
          Length = 360

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 34/65 (51%)

Query: 25 ENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAA 84
          +  +LFV G+ ++T    +++ F R+G V+   V K     +   FGFV F +  D + A
Sbjct: 4  DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63

Query: 85 MRSLH 89
          +R  H
Sbjct: 64 LRDTH 68



 Score = 36.2 bits (82), Expect = 0.028
 Identities = 21/66 (31%), Positives = 29/66 (43%)

Query: 22  VAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDG 81
           V     ++FV GL  +T   + +  FERFG    V V       R   FGFV + S+   
Sbjct: 115 VTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174

Query: 82  IAAMRS 87
              M+S
Sbjct: 175 EVVMQS 180


>At3g11400 eukaryotic translation initiation factor 3 subunit like
           protein
          Length = 294

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 30/101 (29%), Positives = 45/101 (43%), Gaps = 6/101 (5%)

Query: 6   SARAPPPRWSCHERSEVAEENIR------LFVDGLDRDTKHSQVRKLFERFGTVVSVFVP 59
           +A  PP   +  +RS V  +  R      + V  L  DT+   + +LF  FG V  V+V 
Sbjct: 186 AAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVA 245

Query: 60  KTIKRVRREKFGFVLFQSKRDGIAAMRSLHGTRLNSFFLSI 100
              K      FGFV F S+ D   A+  L+G   ++  L +
Sbjct: 246 IDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRV 286


>At2g37510 putative RNA-binding protein
          Length = 142

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 28  RLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRS 87
           RLFV GL R T + +++  F  FG +V   V       R + FGFV + +  D   A   
Sbjct: 35  RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query: 88  LHGTRLNSFFLSINPAR 104
           ++   L+ + + ++PAR
Sbjct: 95  MNAKFLDGWVIFVDPAR 111


>At1g13690 AtE1 (atE1)
          Length = 177

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 25/85 (29%), Positives = 38/85 (44%)

Query: 19  RSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSK 78
           + + A +   L+V GL  +   S +   F  FG +  V  P      +   FGFV F  +
Sbjct: 5   QQQQAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLER 64

Query: 79  RDGIAAMRSLHGTRLNSFFLSINPA 103
            D  AAM ++ G  L    L++N A
Sbjct: 65  EDASAAMDNMDGAELYGRVLTVNYA 89


>At2g22100 putative RNA-binding protein
          Length = 382

 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 29  LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
           +FV GL  DT H  ++  FE +G +    V       R + FGFVLF++++   AA+++ 
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224

Query: 89  HGTRLNSFFLSINPAR 104
              R+ +  +S  PAR
Sbjct: 225 E-KRMYNRTVSCLPAR 239


>At4g39260 glycine-rich protein (clone AtGRP8)
          Length = 169

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 22  VAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDG 81
           ++E   R FV GL   T    +++ F +FG V+   +    +  R   FGFV F+ ++  
Sbjct: 1   MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60

Query: 82  IAAMRSLHGTRLNSFFLSINPAR 104
             A+  ++G  L+   +++N A+
Sbjct: 61  RDAIEEMNGKELDGRVITVNEAQ 83


>At1g55310 Serine/arginine-rich protein
          Length = 220

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 8  RAPPPRWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRR 67
          R+P PR     RS     +  L V  L  D +   +RK FE+FG V  +++P+       
Sbjct: 19 RSPSPRGRYGGRSRDLPTS--LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDP 76

Query: 68 EKFGFVLFQSKRDGIAAMRSLHG 90
            FGFV F    D   A   + G
Sbjct: 77 RGFGFVQFMDPADAADAKHHMDG 99


>At1g11650 putative DNA binding protein
          Length = 405

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 24/89 (26%), Positives = 41/89 (45%), Gaps = 6/89 (6%)

Query: 26  NIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAM 85
           N  +FV GLD       ++ +F ++G +V V +P        ++ GFV F  K     A+
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEAL 313

Query: 86  RSLHGTRLNSFFLSINPARFVDRKYKWNP 114
           R L+G +L    + ++  R    K   +P
Sbjct: 314 RMLNGVQLGGTTVRLSWGRSPSNKQSGDP 342


>At5g19030 unknown protein
          Length = 172

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/83 (25%), Positives = 40/83 (47%)

Query: 18  ERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQS 77
           E S +      LFV G        +++K+F  FG V +V +    +  +   +G+V F S
Sbjct: 68  EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127

Query: 78  KRDGIAAMRSLHGTRLNSFFLSI 100
           K D  +A+ +++G   +  F+ +
Sbjct: 128 KEDAQSAVEAMNGKFFDGRFILV 150


>At1g47500 unknown protein
          Length = 434

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 19  RSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSK 78
           RSE    N  +FV GLD       +++ F  FG +VSV +P        +  GFV F ++
Sbjct: 298 RSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVNR 351

Query: 79  RDGIAAMRSLHGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIRQEWRIKHRV 138
            +   A+  L+GT +    + ++  R        NP  KQ      R K   +W   +  
Sbjct: 352 PNAEEALEKLNGTVIGKQTVRLSWGR--------NPANKQ-----PRDKYGNQWVDPYYG 398

Query: 139 GAPFSGTG 146
           G  ++G G
Sbjct: 399 GQFYNGYG 406



 Score = 33.1 bits (74), Expect = 0.23
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 14  WSCHERSEVAEEN----IRLFVDGLDRDTKHSQVRKLF-ERFGTVVSVFVPKTIKRVRRE 68
           W+     E   EN    + +FV  L  D   + + + F E++ +V +  V       R +
Sbjct: 182 WASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSK 241

Query: 69  KFGFVLFQSKRDGIAAMRSLHGTRLNSFFLSINPA 103
            +GFV F  + +   AM  ++G + +S  + I PA
Sbjct: 242 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA 276


>At5g47320 40S ribosomal protein S19
          Length = 212

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 22/77 (28%), Positives = 37/77 (47%)

Query: 28  RLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRS 87
           +L++ GL   T    ++  F  F  V    V       R   +GFV F S+    +A+ +
Sbjct: 32  KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91

Query: 88  LHGTRLNSFFLSINPAR 104
           ++G  LN F +S+N A+
Sbjct: 92  MNGQELNGFNISVNVAK 108


>At5g10800 putative protein
          Length = 957

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 26/85 (30%), Positives = 42/85 (48%), Gaps = 3/85 (3%)

Query: 25  ENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFV--PKTIKRVRREKF-GFVLFQSKRDG 81
           +   L+V  L      + + + F RFG + SV +  P+T +  RRE+  GFV F ++ DG
Sbjct: 169 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADG 228

Query: 82  IAAMRSLHGTRLNSFFLSINPARFV 106
            AA   + G  +  + L I   + V
Sbjct: 229 EAAKEKMQGIIVYEYELKIGWGKVV 253


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,999,178
Number of Sequences: 26719
Number of extensions: 329953
Number of successful extensions: 1051
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 200
length of query: 351
length of database: 11,318,596
effective HSP length: 100
effective length of query: 251
effective length of database: 8,646,696
effective search space: 2170320696
effective search space used: 2170320696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)


Lotus: description of TM0074.9