BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.3
         (267 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g15093 unknown protein                                             376  e-105
At1g71230 c-Jun coactivator-like protein (AJH2)                        30  1.0
At4g04380 putative polyprotein                                         29  3.0
At3g05420 unknown protein                                              29  3.0
At3g55120 chalcone isomerase                                           28  6.6
At3g19850 hypothetical protein                                         28  6.6
At1g17350 hypothetical protein                                         28  6.6
At3g62670 putative protein                                             27  8.7

>At4g15093 unknown protein
          Length = 269

 Score =  376 bits (965), Expect = e-105
 Identities = 180/267 (67%), Positives = 221/267 (82%), Gaps = 4/267 (1%)

Query: 3   LKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVVDS 62
           +  TF++SHGSPTLSID+SL AR+F +SW ++V P +P SILVIS HWDT  P+VN V  
Sbjct: 4   VNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTV-L 62

Query: 63  TNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELL-KEGGFSRVDEDKKRGLDHGAWVP 121
            N+TI+DF GFP PMY+LKY APGA  L KRVKELL KEGG  RVDED KRGLDHGAWVP
Sbjct: 63  RNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVP 122

Query: 122 LLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERHA 181
           L+LMYPEADIP+CQLSVQSN +G++HYN+GKALA LKDEGVLI+GSGSA HNLR L+ + 
Sbjct: 123 LMLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNI 182

Query: 182 TVAA--PWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGE 239
           T  +  PWA+EFD+WL+++LL+GRY DVN +E+KAP+AK AHPWP+H YPLHV +GAAG 
Sbjct: 183 TDGSPVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGG 242

Query: 240 NSKAKLIHSSIDLGSLSYASYQFTSDV 266
           ++KA+ IH+S  LG+LSY+SY FTS +
Sbjct: 243 DAKAEQIHTSWQLGTLSYSSYSFTSSL 269


>At1g71230 c-Jun coactivator-like protein (AJH2)
          Length = 358

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 51 DTAVPTVNVVDSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVK 95
          + ++ TV+  DST+D I+ +    +  +Q + P    PH  KRVK
Sbjct: 16 ENSILTVDSPDSTSDNIFYYDDTSQTRFQQEKPWENDPHYFKRVK 60


>At4g04380 putative polyprotein
          Length = 778

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 5   DTFYISHGSPTLSIDESLVARKF---LQSWKKEV--FPPRPTSILVISGHWDTAVPTVNV 59
           DT YI HG P  + DESL   K    +  W + +     +  S+LV  G  D     V++
Sbjct: 304 DTLYILHGKP--ATDESLAVAKANDDIVLWHRRLCHMSQKNMSLLVKKGFLDK--KKVSM 359

Query: 60  VDSTNDTIY 68
           +D+  D IY
Sbjct: 360 LDTCEDCIY 368


>At3g05420 unknown protein
          Length = 668

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 215 PHAKKAHPWPDHFYPLHVAIGAAGENSKAKLIHSSI--DLGSLSYASYQ 261
           P A     +P+ FY     +G  G +S AK + S    D   L YA YQ
Sbjct: 4   PRATSGPAYPERFYAAASYVGLDGSDSSAKNVISKFPDDTALLLYALYQ 52


>At3g55120 chalcone isomerase
          Length = 246

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 8/48 (16%)

Query: 20  ESLVARKFLQSWKKEVFPP--------RPTSILVISGHWDTAVPTVNV 59
           E+    KFL+ +K+E FPP         PT  L ++   D ++P   +
Sbjct: 139 EAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETGI 186


>At3g19850 hypothetical protein
          Length = 521

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 17/39 (43%), Positives = 22/39 (55%)

Query: 19  DESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTV 57
           ++SLV  KFL  + K   P + T+ L  SG  DTAV  V
Sbjct: 202 NDSLVLTKFLLHYLKTKVPNKSTNKLEYSGLADTAVQGV 240


>At1g17350 hypothetical protein
          Length = 348

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 2   ALKDTFYISHGSPTLSIDESLVARKFLQSWKKEV 35
           A KD++Y +  SPT SID  L   ++L +W+  V
Sbjct: 269 APKDSWYTAKASPTTSIDIPLA--RYLPTWRGNV 300


>At3g62670 putative protein
          Length = 426

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 2/56 (3%)

Query: 189 VEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPW-PDHFYPLHVAIGAAGENSKA 243
           +E DN L E+  EG     +H E+K+P  K    W P+  +   VA+   G   KA
Sbjct: 183 LEQDN-LYESNEEGSKNTCDHKEEKSPTKKPRMQWTPELHHKFEVAVEKMGSLEKA 237


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,566,624
Number of Sequences: 26719
Number of extensions: 296290
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 9
length of query: 267
length of database: 11,318,596
effective HSP length: 98
effective length of query: 169
effective length of database: 8,700,134
effective search space: 1470322646
effective search space used: 1470322646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)