BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0074.19
(2281 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11970 hypothetical protein 1065 0.0
At1g36590 hypothetical protein 1059 0.0
At1g35370 hypothetical protein 920 0.0
At2g10780 pseudogene 706 0.0
At2g04670 putative retroelement pol polyprotein 639 0.0
At2g14650 putative retroelement pol polyprotein 631 e-180
At2g05610 putative retroelement pol polyprotein 582 e-166
At4g10580 putative reverse-transcriptase -like protein 488 e-137
At2g06890 putative retroelement integrase 464 e-130
At3g31970 hypothetical protein 455 e-127
At2g07660 putative retroelement pol polyprotein 388 e-107
At4g07850 putative polyprotein 371 e-102
At4g16910 retrotransposon like protein 365 e-100
At2g14640 putative retroelement pol polyprotein 307 4e-83
At1g37060 Athila retroelment ORF 1, putative 303 6e-82
At4g08100 putative polyprotein 296 1e-79
At4g07830 putative reverse transcriptase 281 3e-75
At4g03650 putative reverse transcriptase 270 5e-72
At1g20390 hypothetical protein 220 7e-57
At2g14040 putative retroelement pol polyprotein 204 6e-52
>At3g11970 hypothetical protein
Length = 1499
Score = 1065 bits (2754), Expect = 0.0
Identities = 573/1450 (39%), Positives = 842/1450 (57%), Gaps = 84/1450 (5%)
Query: 529 KVKLPVFEGEDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLMETEDNLS 588
K+ P F+G W+ + E +F V +TP++M+VK+ + + W +++ L
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 589 ----WEKLKRALIARYGGRRLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQYL 644
W+ + L R+ ++P EL L++ + ++ + FEL+ ++V L E+ +
Sbjct: 171 VLYDWKGYVKLLKERFEDD-CDDPMAELKHLQETDGIIDYHQKFELIKTRVN-LSEEYLV 228
Query: 645 GYFMSGLKPAIRRRVRTLNPGTRMEMMRIAKDVEEELKEEDEDDGKKMVKRSGFDRSGQS 704
+++GL+ + VR P T + + K E+
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEK------------------------- 263
Query: 705 NWAGSSANRVGLFSRDVTRFSKPGGSIPSRSMSSVGSTTNSAASLGSSTRKGENDLRT-- 762
+ P + ++ ST SA + G + + E + +T
Sbjct: 264 -------------------------AHPKKPANTTWSTNRSAPTGGYNKYQKEGESKTDH 298
Query: 763 -GSSEKWKGV----RSFQVDEIAERRAKGLCFKCGGKYHPTLHKCPERSLRVLILGDGET 817
G+ +K V + E+++RR+KGLC+ C KY P H + ++ +
Sbjct: 299 YGNKGNFKPVSQQPKKMSQQEMSDRRSKGLCYFCDEKYTPE-HYLVHKKTQLFRMD---- 353
Query: 818 VDEEGEIVMLEGEPEVSEEDEAVVEYKLMGVLGRMEEHHTMKIEGQVDNVNLLVLIDSGA 877
VDEE E E V+++DE + + + V G + + TM+++G D + +LIDSG+
Sbjct: 354 VDEEFEDAR---EELVNDDDEHMPQISVNAVSG-IAGYKTMRVKGTYDKKIIFILIDSGS 409
Query: 878 SHNFISPAVTNALGLVITPIASRHIRLGDGHRVVTQGVCKGIKARLGKIEVVIDALVLEL 937
+HNF+ P LG + + + DG ++ +G +L D L++ L
Sbjct: 410 THNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDFSWKLQTTTFQSDILLIPL 469
Query: 938 GGLDMVLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQGLGGKGSNHSFLHSF--LMDK 995
G+DMVLGV WL TLG++ ++K L M+F NQ V L GL L +
Sbjct: 470 QGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGSVREVKAQKLQKLQED 529
Query: 996 QYRGGM-------EWWWSHLNSAEVTNTEVETPRELMETLEEFQEVFRSKIQLPPERSKV 1048
Q + M E L + +E+ + E L E+ ++F LPP R K
Sbjct: 530 QVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEPTALPPFREKH 589
Query: 1049 -HQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRPSMSAYSSPVILVKKKDK 1107
H+IKL +N RPYRY HQK EI++ V +L+ G ++ S S Y+SPV+LVKKKD
Sbjct: 590 NHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDG 649
Query: 1108 SWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKT 1167
+WR+CVDYR LN T+ D +PIP++++L+DEL GA IFSKIDL++GYHQ+R+ DDI+KT
Sbjct: 650 TWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKT 709
Query: 1168 AFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHLT 1227
AF+TH+GH+EYLVMPFGL NAPATFQ +MN IF+P+LRKFVLVFFDDIL+YS L EH
Sbjct: 710 AFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQ 769
Query: 1228 HLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVK 1287
HLK V V+ AN A +KC F ++YLGH IS G+ DP K+K + +WP P +K
Sbjct: 770 HLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLK 829
Query: 1288 GVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDSFSWGPEADRAFLQLKRVMTSPPVLIL 1347
+RGFLGL GYYR+F++ +G +A PL LTK D+F W A +AF LK + PVL L
Sbjct: 830 QLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSL 889
Query: 1348 PNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMALVLSIQHW 1407
P F F VE DA G+GIGAVLMQ+ PLA+ S+ L L S+YEKEL+A++ +++ W
Sbjct: 890 PLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKW 949
Query: 1408 RHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLENKAADALS 1467
RHYLL FI+ TD +SLK+ L+Q++++P QQ WL KL+ + ++++Y+ G EN ADALS
Sbjct: 950 RHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALS 1009
Query: 1468 RRYDEVELHSLISFPLWNDRKRLLEEITQDPYIQDLQSAVQKDPASKPGFAVQHGVLLYH 1527
R LH ++ + K + D +QD+ +A+Q+DP SK F+ +L
Sbjct: 1010 RVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRK 1069
Query: 1528 GRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYVRACDVC 1587
++V+ +L HGS GGHSG T++R+ YW GM K ++ Y+R+C C
Sbjct: 1070 SKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTC 1129
Query: 1588 QRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILL 1647
Q+ K + GLLQPLPIP+ +W ++S+DFI GLP S G ++VVVDRLSK +HFI L
Sbjct: 1130 QQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIAL 1189
Query: 1648 KHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPE 1707
HPY+A ++A ++ V +LHG P S++SDRD +F S FW E F LQG LK++SAYHP+
Sbjct: 1190 SHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQ 1249
Query: 1708 TDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQAP 1767
+DGQTEV+NRCLE+YLRC D P+ WS W++ AE+WYNT +HSS TPFE+VYG+ P
Sbjct: 1250 SDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPP 1309
Query: 1768 PIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVF 1827
+ +L E+KVA VA L ER++ L L+ HL +AQ +M +A++ R + F +G++V+
Sbjct: 1310 VHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVY 1369
Query: 1828 LKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKIHPVFHISLLKKA 1887
+KL+P+RQ SVV R NQKL+ +++GP++I + G VAY+L LP+ S++HPVFH+S LK
Sbjct: 1370 VKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVL 1429
Query: 1888 VGNYQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTWEDN 1947
VGN LP+ + D + PE +V + V V + LVKW ++ +EE TWE
Sbjct: 1430 VGNVSTTVHLPSVM--QDVFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFL 1487
Query: 1948 VVLAGQFPEF 1957
L FPEF
Sbjct: 1488 FDLQKTFPEF 1497
>At1g36590 hypothetical protein
Length = 1499
Score = 1059 bits (2738), Expect = 0.0
Identities = 573/1450 (39%), Positives = 841/1450 (57%), Gaps = 84/1450 (5%)
Query: 529 KVKLPVFEGEDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLMETEDNLS 588
K+ P F+G W+ + E +F V +TP++M+VK+ + + W +++ L
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 589 ----WEKLKRALIARYGGRRLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQYL 644
W+ + L R+ ++P EL L++ + ++ + FEL+ ++V L E+ +
Sbjct: 171 VLYDWKGYVKLLKERFEDD-CDDPMAELKHLQETDGIIDYHQKFELIKTRVN-LSEEYLV 228
Query: 645 GYFMSGLKPAIRRRVRTLNPGTRMEMMRIAKDVEEELKEEDEDDGKKMVKRSGFDRSGQS 704
+++GL+ + VR P T + + K E+
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEK------------------------- 263
Query: 705 NWAGSSANRVGLFSRDVTRFSKPGGSIPSRSMSSVGSTTNSAASLGSSTRKGENDLRT-- 762
KP ++ ST SA + G + + E + +T
Sbjct: 264 -----------------AHLKKPA--------NTTWSTNRSAPTGGYNKYQKEGESKTDH 298
Query: 763 -GSSEKWKGV----RSFQVDEIAERRAKGLCFKCGGKYHPTLHKCPERSLRVLILGDGET 817
G+ +K V + E+++RR+KGLC+ C KY P H + ++ +
Sbjct: 299 YGNKGNFKPVSQQPKKMSQQEMSDRRSKGLCYFCDEKYTPE-HYLVHKKTQLFRMD---- 353
Query: 818 VDEEGEIVMLEGEPEVSEEDEAVVEYKLMGVLGRMEEHHTMKIEGQVDNVNLLVLIDSGA 877
VDEE E E V+++DE + + + V G + + TM+++G D + +LIDSG+
Sbjct: 354 VDEEFEDAR---EELVNDDDEHMPQISVNAVSG-IAGYKTMRVKGTYDKKIIFILIDSGS 409
Query: 878 SHNFISPAVTNALGLVITPIASRHIRLGDGHRVVTQGVCKGIKARLGKIEVVIDALVLEL 937
+HNF+ P LG + + + DG ++ +G +L D L++ L
Sbjct: 410 THNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDFSWKLQTTTFQSDILLIPL 469
Query: 938 GGLDMVLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQGLGGKGSNHSFLHSF--LMDK 995
G+DMVLGV WL TLG++ ++K L M+F NQ V L GL L +
Sbjct: 470 QGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGSVREVKAQKLQKLQED 529
Query: 996 QYRGGM-------EWWWSHLNSAEVTNTEVETPRELMETLEEFQEVFRSKIQLPPERSKV 1048
Q + M E L + +E+ + E L E+ ++F LPP R K
Sbjct: 530 QVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEPTALPPFREKH 589
Query: 1049 -HQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRPSMSAYSSPVILVKKKDK 1107
H+IKL +N RPYRY HQK EI++ V +L+ G ++ S S Y+SPV+LVKKKD
Sbjct: 590 NHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDG 649
Query: 1108 SWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKT 1167
+WR+CVDYR LN T+ D +PIP++++L+DEL GA IFSKIDL++GYHQ+R+ DDI+KT
Sbjct: 650 TWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKT 709
Query: 1168 AFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHLT 1227
AF+TH+GH+EYLVMPFGL NAPATFQ +MN IF+P+LRKFVLVFFDDIL+YS L EH
Sbjct: 710 AFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQ 769
Query: 1228 HLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVK 1287
HLK V V+ AN A +KC F ++YLGH IS G+ DP K+K + +WP P +K
Sbjct: 770 HLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLK 829
Query: 1288 GVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDSFSWGPEADRAFLQLKRVMTSPPVLIL 1347
+RGFLGL GYYR+F++ +G +A PL LTK D+F W A +AF LK + PVL L
Sbjct: 830 QLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSL 889
Query: 1348 PNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMALVLSIQHW 1407
P F F VE DA G+GIGAVLMQ+ PLA+ S+ L L S+YEKEL+A++ +++ W
Sbjct: 890 PLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKW 949
Query: 1408 RHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLENKAADALS 1467
RHYLL FI+ TD +SLK+ L+Q++++P QQ WL KL+ + ++++Y+ G EN ADALS
Sbjct: 950 RHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALS 1009
Query: 1468 RRYDEVELHSLISFPLWNDRKRLLEEITQDPYIQDLQSAVQKDPASKPGFAVQHGVLLYH 1527
R LH ++ + K + D +QD+ +A+Q+DP SK F+ +L
Sbjct: 1010 RVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRK 1069
Query: 1528 GRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYVRACDVC 1587
++V+ +L HGS GGHSG T++R+ Y GM K ++ Y+R+C C
Sbjct: 1070 SKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTC 1129
Query: 1588 QRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILL 1647
Q+ K + GLLQPLPIP+ +W ++S+DFI GLP S G ++VVVDRLSK +HFI L
Sbjct: 1130 QQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIAL 1189
Query: 1648 KHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPE 1707
HPY+A ++A+ ++ V +LHG P S++SDRD +F S FW E F LQG LK++SAYHP+
Sbjct: 1190 SHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQ 1249
Query: 1708 TDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQAP 1767
+DGQTEV+NRCLE+YLRC D P+ WS W++ AE+WYNT +HSS TPFE+VYG+ P
Sbjct: 1250 SDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPP 1309
Query: 1768 PIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVF 1827
+ +L E+KVA VA L ER++ L L+ HL +AQ +M +A++ R + F +G++V+
Sbjct: 1310 VHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVY 1369
Query: 1828 LKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKIHPVFHISLLKKA 1887
+KL+P+RQ SVV R NQKL+ +++GP++I + G VAY+L LP+ S++HPVFH+S LK
Sbjct: 1370 VKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVL 1429
Query: 1888 VGNYQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTWEDN 1947
VGN LP+ + D + PE +V + V V + LVKW ++ +EE TWE
Sbjct: 1430 VGNVSTTVHLPSVM--QDVFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFL 1487
Query: 1948 VVLAGQFPEF 1957
L FPEF
Sbjct: 1488 FDLQKTFPEF 1497
>At1g35370 hypothetical protein
Length = 1447
Score = 920 bits (2377), Expect = 0.0
Identities = 501/1221 (41%), Positives = 724/1221 (59%), Gaps = 59/1221 (4%)
Query: 742 TTNSAASLGSSTRKGENDLRTGSSEKWKGVRSF----QVDEIAERRAK-GLCFKCGGKYH 796
T LG + S+ KG RS V E+ ++ GLC+ C K+
Sbjct: 255 TVRDCLRLGKYYERAHPKKTVSSTWSQKGTRSGGSYRPVKEVEQKSDHLGLCYFCDEKFT 314
Query: 797 PTLHKCPERSLRVLILGDGETVDEEGEIVMLEGEPEVSEEDEAVVEYKLMGVLGRMEEHH 856
P H + ++ + E ++ E++ + E + + + + V G + +
Sbjct: 315 PE-HYLVHKKTQLFRMDVDEEFEDAVEVLS-----DDDHEQKPMPQISVNAVSG-ISGYK 367
Query: 857 TMKIEGQVDNVNLLVLIDSGASHNFISPAVTNALGLVITPIASRHIRLGDGHRVVTQGVC 916
TM ++G VD +L +LIDSG++HNFI V LG + + + DG ++ G
Sbjct: 368 TMGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQI 427
Query: 917 KGIKARLGKIEVVIDALVLELGGLDMVLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQ 976
KG +L D L++ L G+DMVLGV WL TLG++ ++K L MQF + NQ V L
Sbjct: 428 KGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLH 487
Query: 977 GLGGKGSNHSFLHSFLMDKQ----------YRGGMEWWWSHLNSAEVTNTEVETPRELME 1026
G+ GS L Q R + + S ++V +
Sbjct: 488 GII-TGSVRDIKAHKLQKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEESVVQN 546
Query: 1027 TLEEFQEVFRSKIQLPPERSKV-HQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEA 1085
+EEF +VF LPP R K H+IKL +N RPYRY HQK+EI++ V +++++
Sbjct: 547 IVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKS 606
Query: 1086 GIIRPSMSAYSSPVILVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIF 1145
G I+ S S ++SPV+LVKKKD +WR+CVDY LN T+ D++ IP++++L+DEL G+ +F
Sbjct: 607 GTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVF 666
Query: 1146 SKIDLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLR 1205
SKIDL++GYHQ+R+ DDI+KTAF+THNGH+EYLVM FGL NAPATFQ++MN +FR +LR
Sbjct: 667 SKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLR 726
Query: 1206 KFVLVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGA 1265
KFVLVFFDDILIYS + EH HL+LV V+ + A +K ++LGH IS
Sbjct: 727 KFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK--------EHLGHFISAR 778
Query: 1266 GMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDSFSWG 1325
+ DP K++ + +WP P VK VRGFLG GYYR+F++++G +A PL LTK D F W
Sbjct: 779 EIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDGFCWS 838
Query: 1326 PEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSA 1385
EA AF LK V+ + PVL LP F F VE DA G+GI AVLMQ+ PLA+ S+ L
Sbjct: 839 LEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISRQLKG 898
Query: 1386 GNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKL 1445
L S+YEKEL+A + +++ WRHYLL FI+ TD +SLK+ L+Q++++P QQ WL KL
Sbjct: 899 KQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKL 958
Query: 1446 MGYQFQVKYKPGLENKAADALSRRYDEVELHSLISFPLWNDRKRLLEEITQDPYIQDLQS 1505
+ + ++++Y+ G EN ADALSR LH +S + K + D ++D+ S
Sbjct: 959 LEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKEIQVAYESDGVLKDIIS 1018
Query: 1506 AVQKDPASKPGFAVQHGVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLA 1565
A+Q+ P +K ++ +L ++V+ LL+ H S GG SG +++R+
Sbjct: 1019 ALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQRVK 1078
Query: 1566 TTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKS 1625
+ YW GM K ++ ++R+C CQ+ K + GLLQPLPIP+ +W D+S+DFI GLP S
Sbjct: 1079 SLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLPNS 1138
Query: 1626 KGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSH 1685
G ++VVVDRLSK +HF+ L HPY+A ++A+ F+ V + HG P S++SDRD +F S
Sbjct: 1139 GGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSD 1198
Query: 1686 FWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWY 1745
FW E FKLQG +L+MSSAYHP++DGQTEV+NRCLE+YLRC P W+ W+ AE+WY
Sbjct: 1199 FWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWY 1258
Query: 1746 NTTFHSSIGQTPFEVVYGRQAPPI-VKFLSNETKVAAVALELSERDEALRQLRGHLQKAQ 1804
NT +HSS TPFE+VYG QAPPI + +L ++KVA VA L ER+ L L+ HL +AQ
Sbjct: 1259 NTNYHSSSQMTPFELVYG-QAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRAQ 1317
Query: 1805 EQMAIYANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVA 1864
+M +A++ R + +F +G++V++KL+P+RQ SVV R+NQKL+ +++GP++I K G V
Sbjct: 1318 HRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEV- 1376
Query: 1865 YRLKLPAESKIHPVFHISLLKKAVGNYQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGD 1924
VGN QLP+ L D + PE I+ + V+
Sbjct: 1377 ----------------------MVGNVTTSTQLPSVL--PDIFEKAPEYILERKLVKRQG 1412
Query: 1925 SEVHQSLVKWKHKSMEEVTWE 1945
LVKW + +EE TW+
Sbjct: 1413 RAATMVLVKWIGEPVEEATWK 1433
Score = 65.5 bits (158), Expect = 3e-10
Identities = 38/154 (24%), Positives = 76/154 (48%), Gaps = 6/154 (3%)
Query: 529 KVKLPVFEGEDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLMETEDNL- 587
K+ P F+G W+ + E +F V TP+EM+VK+ + + W + +++ L
Sbjct: 116 KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLD 175
Query: 588 ---SWEKLKRALIARYGGRRLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQYL 644
+W + + L R+ ++P EL L++ + E+ + FEL+ ++ L E+ +
Sbjct: 176 VFFNWPEYVKLLKDRFED-ACDDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLV 233
Query: 645 GYFMSGLKPAIRRRVRTLNPGTRMEMMRIAKDVE 678
+++GL+ + VR P T + +R+ K E
Sbjct: 234 SVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYE 267
>At2g10780 pseudogene
Length = 1611
Score = 706 bits (1821), Expect = 0.0
Identities = 492/1494 (32%), Positives = 763/1494 (50%), Gaps = 141/1494 (9%)
Query: 539 DPVA---WITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLMET--EDNLSWEKLK 593
DP+ W +R + F P++ + + +EG +W+ + + ++ S+ +
Sbjct: 187 DPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRSFADFE 246
Query: 594 RALIARY----GGRRLENPFEELSTLRQKGSVDEFVESFELLSSQVGR-LPEDQ-YLGYF 647
+Y RLE + +L ++ +V E+ E F L VGR L E+Q L F
Sbjct: 247 DEFNKKYFPPEAWDRLECAYLDL--VQGNRTVREYDEEFNRLRRYVGRELEEEQAQLRRF 304
Query: 648 MSGLKPAIRRR--VRTLNPGTRMEMMRIAKDVEEELKEEDEDDGKKMVKRSGFDRSGQSN 705
+ GL+ IR VRT N + E++ A +EE ++EE + + + R+ QS
Sbjct: 305 IRGLRIEIRNHCLVRTFNSVS--ELVERAAMIEEGIEEE-----RYLNREKAPIRNNQS- 356
Query: 706 WAGSSANRVGLFSRDVTRFSKPGGSIPSRSMSSVGSTTNSAASLGSSTRKGENDLRTGSS 765
+KP R V +T S A G G+N S
Sbjct: 357 -------------------TKPADK--KRKFDKVDNT-KSDAKTGECVTCGKNH----SG 390
Query: 766 EKWKGVRSFQVDEIAERRAKGLCFKCGGKYHPTLHKCPERSL-RVLILGD--------GE 816
WK + G C +CG K H + CP+ + +LG+ G+
Sbjct: 391 TCWKAI--------------GACGRCGSKDH-AIQSCPKMEPGQSKVLGEETRTCFYCGK 435
Query: 817 TVDEEGEIVMLEGEPEVSEEDEAVVEYKLMGVLGRMEEHHTMKIEGQVDNVNLLVLIDSG 876
T + E L E + + D G G + +V ++ ++
Sbjct: 436 TGHLKRECPKLTAEKQAGQRDNR-------GGNGLPPPPKRQAVASRVYELSE----EAN 484
Query: 877 ASHNFISPAVTNALGLVITPIASRH-IRLGDGHRVVTQGVCKGIKARLGKIEVVIDALVL 935
+ NF A+T G P +R G + G+ +GI + + + D +++
Sbjct: 485 DAGNF--RAITG--GFRKEPNTDYGMVRAAGGQAMYPTGLVRGISVVVNGVNMPADLIIV 540
Query: 936 ELGGLDMVLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQGLGGKGSNHSFLHSFLMDK 995
L D++LG+ WL K +D +QF ++K QG+ + ++ S + S + +
Sbjct: 541 PLKKHDVILGMDWLGKY-KAHIDCHRGRIQFERDEGMLKFQGI--RTTSGSLVISAIQAE 597
Query: 996 QYRG-GMEWWWSHLNSAEVTNTEVETPRELMET--LEEFQEVFRSKIQLPPERSKVHQIK 1052
+ G G E + A +T EV EL + + EF +VF + +PP+RS I+
Sbjct: 598 RMLGKGCEAYL-----ATITTKEVGASAELKDIPIVNEFSDVFAAVSGVPPDRSDPFTIE 652
Query: 1053 LFPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRPSMSAYSSPVILVKKKDKSWRMC 1112
L P I+ PYR + ++++Q+ EL++ G IRPS S + +PV+ VKKKD S+R+C
Sbjct: 653 LEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSFRLC 712
Query: 1113 VDYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTH 1172
+DYR LNK T+ +KYP+P +DEL+D+L GA FSKIDL SGYHQI + D+ KTAFRT
Sbjct: 713 IDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTR 772
Query: 1173 NGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHLTHLKLV 1232
H+E++VMPFGL NAPA F +MN +FR +L +FV++F +DIL+YSK H HL+ V
Sbjct: 773 YDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAV 832
Query: 1233 LSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRGF 1292
L L + A +KC F S+ +LGH+IS G++VDPEK++ I +WP P+N +R F
Sbjct: 833 LERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSF 892
Query: 1293 LGLTGYYRKFIKDYGKMANPLTELTKKDS-FSWGPEADRAFLQLKRVMTSPPVLILPNFT 1351
LGL GYYR+F+ + MA PLT LT KD+ F+W E +++FL+LK ++T+ PVL+LP
Sbjct: 893 LGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEG 952
Query: 1352 LPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMALVLSIQHWRHYL 1411
P+ V DA+ G+G VLMQ+ +A+ S+ L ++ E+ A+V ++ WR YL
Sbjct: 953 EPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYL 1012
Query: 1412 LGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLENKAADALSRRYD 1471
G + +YTDHKSLK+ Q + Q+ W+ + Y + Y PG N+ ADALSRR
Sbjct: 1013 YGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALSRRRS 1072
Query: 1472 EVELH----SLISFPLWNDRKRLLEEIT--------QDPYIQDLQSAVQKDPASKPGFAV 1519
EVE L++ L +E+ Q + ++ A ++D K G+A
Sbjct: 1073 EVEAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERDEEIK-GWAQ 1131
Query: 1520 QH---------GVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYW 1570
+ G ++ +GR+ + +L E H S H G + YR L +W
Sbjct: 1132 NNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHW 1191
Query: 1571 VGMQKRVRDYVRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLP---KSKG 1627
VGM+K V +V C CQ K P GLLQ LPIP W+ +++DF+TGLP KSK
Sbjct: 1192 VGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSK- 1250
Query: 1628 FEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFW 1687
AV VVVDRL+K +HF+ + A+ IAE ++ E+VRLHGIP S++SDRD F S FW
Sbjct: 1251 HNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFW 1310
Query: 1688 SELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNT 1747
K GT++ +S+AYHP+TD Q+E + LE LR D +W ++ EF YN
Sbjct: 1311 KAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNN 1370
Query: 1748 TFHSSIGQTPFEVVYGRQA-PPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQ 1806
+F +SIG +P+E +YGR P+ E ++ + + E E ++ L+ L++AQ++
Sbjct: 1371 SFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTI-VDETTERMKFLKIKLKEAQDR 1429
Query: 1807 MAIYANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYR 1866
YANK+R++L F VG+ V+LK ++ +KL+ R+ GP+++ +VGAVAY+
Sbjct: 1430 QKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTS-RKKLSPRYVGPYKVIERVGAVAYK 1488
Query: 1867 LKLPAE-SKIHPVFHISLLKKAVGNYQVQGQ-LPADLGVDDTTDIYPEVIVGTRTVRLGD 1924
L LP + + H VFH+S L+K + + + + +P L + T + +P I+ T
Sbjct: 1489 LDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRG 1548
Query: 1925 SEVHQSLVKWKHKSMEEVTWEDNVVLAGQFPEFCLE---------DKAVPMEGG 1969
V W + EE TWE + FPE+ E + P++GG
Sbjct: 1549 KARDLLKVLWNCRGREEYTWETENKMKANFPEWFKEMGKDQLDADSRTNPIQGG 1602
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 639 bits (1648), Expect = 0.0
Identities = 377/1081 (34%), Positives = 583/1081 (53%), Gaps = 64/1081 (5%)
Query: 901 HIRLGDGHRVVTQGVCKGIKARLGKIEVVIDALVLELGGLDMVLGVSWLSTLGKVVMDWK 960
H+++ G + G KG+ ++ + D ++ + D++LG+ WL +V +D
Sbjct: 364 HVKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHY-RVHLDCH 422
Query: 961 LLTMQFVHGNQVVKLQGLGGKGSNHSFLHSFLMDKQYRGGMEWWWSHLNSAEVTNTEVET 1020
+ F + QG+ S + + K G E ++L + + + +
Sbjct: 423 RGRVSFERPEGRLVYQGVRPT-SGSLVISAVQAKKMIEKGCE---AYLVTISMPESLGQV 478
Query: 1021 PRELMETLEEFQEVFRSKIQLPPERSKVHQIKLFPEQETINVRPYRYPHHQKEEIERQVA 1080
+ ++EF++VF+S LPP RS I+L P ++ PYR + E+++Q+
Sbjct: 479 AVSDIRVIQEFEDVFQSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLE 538
Query: 1081 ELMEAGIIRPSMSAYSSPVILVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELN 1140
+L+ G IRPS S + +PV+ VKKKD S+R+C+DYR LN T+ +KYP+P +DELLD+L
Sbjct: 539 DLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLR 598
Query: 1141 GASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIF 1200
GA+ FSKIDL SGYHQI + E D+ KTAFRT GH+E++VMPF L NAPA F +MN +F
Sbjct: 599 GATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVF 658
Query: 1201 RPYLRKFVLVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGH 1260
+ +L +FV++F DDIL+YSK EH HL+ V+ L A +KC F I +LGH
Sbjct: 659 QEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGH 718
Query: 1261 IISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKD 1320
I+S G++VDPEK++ I DWP P N +R FL LTGYYR+F+K + MA P+T+LT KD
Sbjct: 719 IVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKD 778
Query: 1321 -SFSWGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFF 1379
F W PE + F+ LK ++TS PVL LP P+ V DA+ G+G VLMQ+ + +A+
Sbjct: 779 VPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGKVIAYA 838
Query: 1380 SKALSAGNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQ 1439
S+ L ++ E+ ++ +++ WR YL G + V+TDHKSLK+ Q + Q
Sbjct: 839 SRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQM 898
Query: 1440 CWLAKLMGYQFQVKYKPGLENKAADALSRR----------------YDEVELHSLISFPL 1483
W+ + Y ++ Y PG N ADALSR+ + L + PL
Sbjct: 899 RWMELVADYDLEIAYHPGKANVVADALSRKRVGAAPGQSVEALVSEIGALRLCVVAREPL 958
Query: 1484 WNDRKRLLEEITQDPYIQDLQS---AVQKDPASKPGFAVQHGVLLYHGRLVLSPTSPSIP 1540
+ + +T+ Q+ A K S+ FA +G + +GR+ +
Sbjct: 959 GLEAVDRADLLTRARLAQEKDEGLIAASKAEGSEYQFAA-NGTIFVYGRVCVPKDEELRR 1017
Query: 1541 WLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGGL 1600
+L E H S H G + YR L WVGM++ V ++V CDVCQ K
Sbjct: 1018 EILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEH------ 1071
Query: 1601 LQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVF 1660
+P+A+W V++DRL+K +HF+ ++ A +A+ +
Sbjct: 1072 ----QVPDAIW---------------------VIMDRLTKSAHFLAIRKTDGAAVLAKKY 1106
Query: 1661 VREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLE 1720
V E+V+LHG+P S++SDRD F FW GTK++MS+AYHP+TDGQ+E + LE
Sbjct: 1107 VSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLE 1166
Query: 1721 SYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQAPPIVKFLSNETKVA 1780
LR D W+ +S EF YN ++ +SIG PFE +YGR +++ E +
Sbjct: 1167 DMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWTQVEERSI 1226
Query: 1781 AVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKLRPHR--QHSV 1838
A + E E +R L+ ++++AQ + YA+K+RR+L F VG+ V+LK+ R S+
Sbjct: 1227 YGADYVQETTERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSI 1286
Query: 1839 VKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESK-IHPVFHISLLKKAV-GNYQVQGQ 1896
+ KL+ R+ GPF+I +VG VAYRL+LP + H VFH+ +L+K + + +V +
Sbjct: 1287 ---LETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHKDDEVLVK 1343
Query: 1897 LPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTWEDNVVLAGQFPE 1956
+P DL + T + P ++ R L ++ V W + E TWE + +F +
Sbjct: 1344 IPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARFKK 1403
Query: 1957 F 1957
+
Sbjct: 1404 W 1404
Score = 51.6 bits (122), Expect = 5e-06
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 538 EDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLM--ETEDNLSWEKLKRA 595
E+ +W +R + F P E RV L +EG W+ + + ++SW
Sbjct: 145 EEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQADMSWADFVAE 204
Query: 596 LIARYGGR----RLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQY--LGYFMS 649
A+Y + R+E F EL+ + + SV E+ F L + GR ED + F+
Sbjct: 205 FNAKYFPQEALDRMEARFLELT--QGEWSVREYDREFNRLLAYAGRGMEDDQAQMRRFLR 262
Query: 650 GLKPAIRRRVRTLNPGTRMEMMRIAKDVEEELKEE 684
GL+P +R + R T+ ++ A +VEE+L+ +
Sbjct: 263 GLRPDLRVQCRVSQYATKAALVETAAEVEEDLQRQ 297
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 631 bits (1627), Expect = e-180
Identities = 390/1103 (35%), Positives = 584/1103 (52%), Gaps = 95/1103 (8%)
Query: 864 VDNVNLLVLIDSGASHNFISPAVTNALGLVITPIASRH-IRLGDGHRVVTQGVCKGIKAR 922
V V VL DSGASH FI+P + + P +++ G V G KG+ +
Sbjct: 308 VGGVEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQ 367
Query: 923 LGKIEVVIDALVLELGGLDMVLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQGLGGKG 982
+ + D ++ + D++LG+ WL +V +D + F + QG+
Sbjct: 368 IAGESMPADLIISPVELYDVILGMDWLDHY-RVHLDCHRGRVSFERPEGSLVYQGVRPT- 425
Query: 983 SNHSFLHSFLMDKQYRGGMEWWWSHLNSAEVTNTEVETPRELMETLEEFQEVFRSKIQLP 1042
S + + +K G E + EF++VF+S LP
Sbjct: 426 SGSLVISAVQAEKMIEKGCEAYL------------------------EFEDVFQSLQGLP 461
Query: 1043 PERSKVHQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRPSMSAYSSPVILV 1102
P RS I+L P ++ PYR + E+++Q+ +L+ A PV+ V
Sbjct: 462 PSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGA------------PVLFV 509
Query: 1103 KKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHED 1162
KKKD S+R+C+DYR LN T+ +KYP+P +DELLD+L GA+ FSKIDL SGYH I + E
Sbjct: 510 KKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEA 569
Query: 1163 DIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDL 1222
D+ KTAFRT GH+E++VMPFGL NAPA F +MN +F+ L +FV++F DDIL+YSK L
Sbjct: 570 DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSL 629
Query: 1223 PEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPV 1282
EH HL+ V+ L A +KC F + +LGHI+S G++VDPEK++ I DW
Sbjct: 630 EEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHT 689
Query: 1283 PKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKD-SFSWGPEADRAFLQLKRVMTS 1341
P N +R FLGL GYYR+F+K + MA P+T+LT KD F W PE + F+ LK ++TS
Sbjct: 690 PTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTS 749
Query: 1342 PPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMALV 1401
PVL LP P+ V DA+G G+G VLMQ+ + +A+ S+ L ++ E+ A++
Sbjct: 750 TPVLALPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVI 809
Query: 1402 LSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLENK 1461
+++ WR YL G V+TDHKSLK+ Q + Q+ W+ + Y ++ Y PG N
Sbjct: 810 FALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANV 869
Query: 1462 AADALSRRYDEVELHSLISFPLWNDRKRLLEEITQDPYIQDLQSAVQKDPASKPGFAVQH 1521
ADALS H + + L+ EI AV ++P AV
Sbjct: 870 VADALS--------HKRVGAAPGQSVEALVSEIGALRL-----CAVAREPLGLE--AVDR 914
Query: 1522 GVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYV 1581
LL RL G + Y+ + + V ++V
Sbjct: 915 ADLLTRVRLAQEK-------------------DEGLIAAYKAEGS--------EDVANWV 947
Query: 1582 RACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKY 1641
CDVCQ K PGG+LQ LPIP W+ +++DF+ GLP S+ +A+ V+VDRL+K
Sbjct: 948 AECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTKDAIWVIVDRLTKS 1007
Query: 1642 SHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMS 1701
+HF+ ++ A +A+ +V E+V+LHG+P S++SDRD F S FW GTK++MS
Sbjct: 1008 AHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMS 1067
Query: 1702 SAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVV 1761
+AYHP+T GQ+E + LE LR D W+ +S EF YN ++ +SIG PFE +
Sbjct: 1068 TAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAPFEAL 1127
Query: 1762 YGRQA-PPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSF 1820
Y R P+ E + A + E E +R L+ ++++AQ++ YA+K+RR+L F
Sbjct: 1128 YERPCRTPLCLTQVGERSIYG-ADYVQETTERIRVLKLNMKEAQDRQRSYADKRRRELEF 1186
Query: 1821 AVGEWVFLKLR----PHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESK-I 1875
VG+ V+LK+ P+R S KL+ R+ GPF+I +VG VAYRL+LP +
Sbjct: 1187 EVGDRVYLKMAMLRGPNRSIS-----ETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAF 1241
Query: 1876 HPVFHISLLKKAV-GNYQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKW 1934
H VFH+S+L+K + + +V ++P DL + T + P ++ R L ++ V W
Sbjct: 1242 HKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLW 1301
Query: 1935 KHKSMEEVTWEDNVVLAGQFPEF 1957
+ + TWE + +F ++
Sbjct: 1302 DCDGVTKETWEPEARMKARFKKW 1324
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 582 bits (1501), Expect = e-166
Identities = 292/661 (44%), Positives = 410/661 (61%), Gaps = 52/661 (7%)
Query: 1026 ETLEEFQEVFRSKIQLPPERSKV-HQIKLFPEQETINVRPYRYPHHQKEEIERQVAELME 1084
+ + EF ++F LPP R+ H+I+L + +N RPYRY HQK EI++ V +++
Sbjct: 9 KVVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDMLA 68
Query: 1085 AGIIRPSMSAYSSPVILVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASI 1144
+G I+ S S Y+SPV+LVKKKD +WR+CVDYR LN T+ D++PIP++++L+DEL G+++
Sbjct: 69 SGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNV 128
Query: 1145 FSKIDLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYL 1204
+SKIDL++GYHQ+R+ DI KTAF+THNGHYEYLVMPFGL NAPA+FQ++MN F+P+L
Sbjct: 129 YSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPFL 188
Query: 1205 RKFVLVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISG 1264
RKFVLVFFDDILIYS + EH HL+ V V+ + A +KC F ++YLGH ISG
Sbjct: 189 RKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFISG 248
Query: 1265 AGMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDSFSW 1324
G+A DP K+K + DWPVP N+K + GFLGLTGYYR+F
Sbjct: 249 EGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF---------------------- 286
Query: 1325 GPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALS 1384
F VE DA G GIGAVLMQ+ PLAF S+ L
Sbjct: 287 -----------------------------FVVEMDACGHGIGAVLMQEGHPLAFISRQLK 317
Query: 1385 AGNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAK 1444
L S+YEKEL+A++ ++ WRHYL+ FI+ TD +SLK+ L+Q++++P QQ WL K
Sbjct: 318 GKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPK 377
Query: 1445 LMGYQFQVKYKPGLENKAADALSRRYDEVELHSLISFPLWNDRKRLLEEITQDPYIQDLQ 1504
L+ + ++++YK G EN ADALSR LH +S + K + D IQ +
Sbjct: 378 LLEFDYEIQYKQGKENLVADALSRVEGSEVLHMALSVVECDLLKEIQAGYVTDGDIQGII 437
Query: 1505 SAVQKDPASKPGFAVQHGVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRL 1564
+ +Q+ SK + GVL ++V+ S +L H S GGHSG T++R+
Sbjct: 438 TILQQQADSKKHYTWSQGVLRRKNKIVVPNNSGIKDTILRWLHCSGMGGHSGKEVTHQRV 497
Query: 1565 ATTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPK 1624
YW M K ++ ++R+C CQ+ K + GLLQPLPIP+ +W D+S+DFI GLP
Sbjct: 498 KGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDRIWSDVSMDFIDGLPL 557
Query: 1625 SKGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVS 1684
S G ++VVVDRLSK +HFI L HPY+A ++A+ ++ V +LHG P+S++ + V
Sbjct: 558 SNGKTVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLHGCPSSIVVSSRRVLVQ 617
Query: 1685 H 1685
H
Sbjct: 618 H 618
Score = 127 bits (319), Expect = 7e-29
Identities = 62/140 (44%), Positives = 97/140 (69%), Gaps = 2/140 (1%)
Query: 1750 HSSIGQTPFEVVYGRQAPPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAI 1809
HS++ TP+E VYG+ P + +L E+KVA VA + ER+ + L+ HL +AQ +M
Sbjct: 622 HSTM--TPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQ 679
Query: 1810 YANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKL 1869
A++ + F VG++VF+KL+P+RQ SVV R QKL+ +++GP+++ + G VAY+L+L
Sbjct: 680 LADQHITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQL 739
Query: 1870 PAESKIHPVFHISLLKKAVG 1889
PA S++HPVFH+S L+ VG
Sbjct: 740 PANSQVHPVFHVSQLRVLVG 759
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 488 bits (1256), Expect = e-137
Identities = 281/774 (36%), Positives = 427/774 (54%), Gaps = 38/774 (4%)
Query: 907 GHRVVTQGVCKGIKARLGKIEVVIDALVLELGGLDMVLGVSWLSTLGKVVMDWKLLTMQF 966
G + G KG+ ++ + D ++ + D++LG+ WL +V +DW + F
Sbjct: 344 GQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDYY-RVHLDWHRGRVFF 402
Query: 967 VHGNQVVKLQGLGGKGSNHSFLHSFLMDKQYRGGMEWWWSHLNSAEVTNTEVETPRELME 1026
+ QG+ S + + +K G E ++L + + + + +
Sbjct: 403 ERPEGRLVYQGVRPI-SGSLVISAVQAEKMIEKGCE---AYLVTISMPESVGQVAVSDIR 458
Query: 1027 TLEEFQEVFRSKIQLPPERSKVHQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAG 1086
++EFQ+VF+S LPP +S I+L P ++ PYR + E+++Q+ +L+ G
Sbjct: 459 VVQEFQDVFQSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKG 518
Query: 1087 IIRPSMSAYSSPVILVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFS 1146
IRPS S + +PV+ VKKKD S+R+C+DYR LN+ T+ ++YP+P +DELLD+L GA+ FS
Sbjct: 519 FIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFS 578
Query: 1147 KIDLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRK 1206
KIDL SGYHQI + E D+ KTAFRT GH+E++VMPFGL NAPA F +MN +F+ +L +
Sbjct: 579 KIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDE 638
Query: 1207 FVLVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAG 1266
FV++F DDIL+YSK E HL+ V+ L A +KC F + +LGHI+S G
Sbjct: 639 FVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEG 698
Query: 1267 MAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKD-SFSWG 1325
++VDPEK++ I DWP P N +R FLG GYYR+F+K + MA P+T+LT KD F W
Sbjct: 699 VSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWS 758
Query: 1326 PEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSA 1385
E + F+ LK ++TS PVL LP P+ V DA+ G+G VLMQ + +A+ S+ L
Sbjct: 759 QECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMK 818
Query: 1386 GNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKL 1445
++ E+ A++ +++ WR YL G + V+TDHKSLK+ Q + Q+ W+ +
Sbjct: 819 HEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELV 878
Query: 1446 MGYQFQVKYKPGLENKAADALSRRYDEVELHSLISFPLWNDRKRLLEEITQDPYIQDLQS 1505
Y ++ Y PG N DALSR+ + L + L+ EI
Sbjct: 879 ADYDLEIAYHPGKANVVVDALSRK--------RVGAALGQSVEVLVSEIGALRL-----C 925
Query: 1506 AVQKDPASKPGFAVQHGVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLA 1565
AV ++P AV LL RL E + + YR L
Sbjct: 926 AVAREPLGLE--AVDRADLLTRVRLAQKKD--------EGLRAT---------KMYRDLK 966
Query: 1566 TTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKS 1625
WVGM+ V ++V CDVCQ K GG+LQ LPIP W+ +++D + GL S
Sbjct: 967 RYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLRVS 1026
Query: 1626 KGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRD 1679
+ +A+ V+VDRL+K +HF+ ++ A +A+ FV E+V+LHG+P ++ +D
Sbjct: 1027 RTKDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQD 1080
Score = 85.5 bits (210), Expect = 3e-16
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 1771 KFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKL 1830
KF+S K+ V L + E AQ++ YA+K+RR+L F VG+ V+LK+
Sbjct: 1060 KFVSEIVKLHGVPLNMKE--------------AQDRQRSYADKRRRELEFEVGDRVYLKM 1105
Query: 1831 R----PHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESK-IHPVFHISLLK 1885
P+R S KL+ R+ GPF+I +V VAYRL+LP + H VFH+S+L+
Sbjct: 1106 AMLRGPNRSIS-----ETKLSPRYMGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLR 1160
Query: 1886 KAV-GNYQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTW 1944
K + + + ++P DL + T + P ++ R L ++ V W + E TW
Sbjct: 1161 KCLHKDDEALAKIPEDLQPNMTLEARPVRVLERRIKELRQKKIPLIKVLWDCDGVTEETW 1220
Query: 1945 EDNVVLAGQFPEF 1957
E + +F ++
Sbjct: 1221 EPEARMKARFKKW 1233
Score = 37.4 bits (85), Expect = 0.10
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 538 EDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLM--ETEDNLSWEKLKRA 595
E+ +W +R F P E RV L +EG W+ + + ++SW
Sbjct: 159 EEADSWRSRVGRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQTDMSWADFVAE 218
Query: 596 LIARYGGRRLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQYLGYFMSGLKPAI 655
A+Y P E L +G D+ +Q+ R F+ GL+P +
Sbjct: 219 FKAKYF------PQEALDPYAGQGMEDD--------QAQMRR---------FLRGLRPDL 255
Query: 656 RRRVRTLNPGTRMEMMRIAKDVEEELKEE 684
R R R T+ ++ A +VEE+ + +
Sbjct: 256 RVRCRVSQYATKAALVETAAEVEEDFQRQ 284
>At2g06890 putative retroelement integrase
Length = 1215
Score = 464 bits (1195), Expect = e-130
Identities = 318/895 (35%), Positives = 465/895 (51%), Gaps = 94/895 (10%)
Query: 778 EIAERRAKGL-CFKCGGKYHPTLHKCPERSLRVLILGDGETVDEEGEIV----MLEGEPE 832
EI+ R + + C+KC GK H ++CP + RV+IL D ++ E EI L+ E
Sbjct: 148 EISTSRVRDVRCYKCQGKGHYA-NECPNK--RVMILLDNGEIEPEEEIPDSPSSLKENEE 204
Query: 833 VSEEDEAVVEYKLMGVLGRMEEHHTMK--------IEGQVDNVNLLVLIDSGASHNFISP 884
+ + E +V + + V + +E K + G+V ++ +ID G+ N S
Sbjct: 205 LPAQGELLVARRTLSVQTKTDEQEQRKNLFHTRCHVHGKVCSL----IIDGGSCTNVASE 260
Query: 885 AVTNALGLVITPIASRHIRLGDGHRVVTQGVCKGIKARLGKIE--VVIDALVLELGGLDM 942
+ LGL + + RV Q V + +GK E ++ D L +E G +
Sbjct: 261 TMVKKLGL-------KWLNDSGKMRVKNQVV---VPIVIGKYEDEILCDVLPMEAGHI-- 308
Query: 943 VLGVSWLSTL-----------------GKVVMDWKLLTMQFVHGNQV-VKLQGLGGKGSN 984
+LG W S GK ++ +T V+ +Q+ +K +
Sbjct: 309 LLGRPWQSDRKVMHDGFTNRHSFEFKGGKTIL--VSMTPHEVYQDQIHLKQKKEQVVKQP 366
Query: 985 HSFLHSFLMDKQYRGGMEWWWSHLNSA--EVTNTEVETPRELMETLEEFQEVF--RSKIQ 1040
+ F S + Y A +TN P E+ L+++++VF +
Sbjct: 367 NFFAKSGEVKSAYSSKQPMLLFVFKEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDNPKG 426
Query: 1041 LPPERSKVHQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRPSMSAYSSPVI 1100
LPP R HQI P N YR + +E++RQ
Sbjct: 427 LPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELQRQ---------------------- 464
Query: 1101 LVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVH 1160
KD SWRMC D RA+N T+ +PIP +D++LDEL+G+SIFSKIDLKSGYHQIR++
Sbjct: 465 ----KDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMN 520
Query: 1161 EDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSK 1220
E D KTAF+T +G YE+LVMPFGL +AP+TF +MN + R ++ FV+V+FDDIL+YS+
Sbjct: 521 EGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSE 580
Query: 1221 DLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDW 1280
L EH+ HL VL+VL AN KC F ++ +LG ++S G+ VD EKVK I DW
Sbjct: 581 SLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDW 640
Query: 1281 PVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKD-SFSWGPEADRAFLQLKRVM 1339
P PK V VR F GL G+YR+F KD+ + PLTE+ KKD F W + AF LK +
Sbjct: 641 PSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKL 700
Query: 1340 TSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMA 1399
T+ PVLIL F FE+ECDA+G GIGAVLMQ ++ +AFFS+ L L Y+KEL A
Sbjct: 701 TNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYA 760
Query: 1400 LVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLE 1459
LV ++Q W+HYL K F+++TDH+SLKH Q+ + W+ + + + +KYK G +
Sbjct: 761 LVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKD 820
Query: 1460 NKAADALSRRYDEVELHSLISFPLWNDRKRLLEEITQDPYIQDLQSAVQKDPASKPGFAV 1519
N ADALS+RY L S ++ L +++ E D Q++ A +K + + +
Sbjct: 821 NVVADALSQRY---TLLSTLNVKLMG-FEQIKEVYETDHDFQEVYKACEKFASGR--YFR 874
Query: 1520 QHGVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRD 1579
Q L Y RL + P + E HG GH G +T + W M+ V+
Sbjct: 875 QDKFLFYENRLCV-PNCSLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFRWPHMKCDVKR 933
Query: 1580 YVRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVV 1634
C+ C++ K S + P GL PLPIP W D+S+DF+ GLP++ G +++ VV
Sbjct: 934 ICGRCNTCKQAK-SKIQPNGLYTPLPIPKHPWNDISMDFVMGLPRT-GKDSIFVV 986
Score = 46.6 bits (109), Expect = 2e-04
Identities = 39/122 (31%), Positives = 64/122 (51%), Gaps = 10/122 (8%)
Query: 1756 TPFEVVYGRQAPPIVKF-LSNETKVAAVALELSERDEALRQL----RGHLQKAQEQMAIY 1810
+PF++VYG PI F L V+++ ++ E ++Q+ R ++++ + A
Sbjct: 988 SPFQIVYGFN--PISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKLYAKQ 1045
Query: 1811 ANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLP 1870
ANK RR+ F VG+ V++ LR R + K KL R GPF+I ++ AY+L L
Sbjct: 1046 ANKGRREQIFEVGDMVWIHLRKERFPAQRK---SKLMPRIDGPFKIIKRINDNAYQLDLQ 1102
Query: 1871 AE 1872
E
Sbjct: 1103 DE 1104
>At3g31970 hypothetical protein
Length = 1329
Score = 455 bits (1170), Expect = e-127
Identities = 295/847 (34%), Positives = 433/847 (50%), Gaps = 101/847 (11%)
Query: 1136 LDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAV 1195
+ E G S I + + I + E ++ KTAFRT GH+E++VMPFGL N P F +
Sbjct: 552 MPESVGQVAVSDIRVVHEFEDIPIAEANVRKTAFRTRYGHFEFVVMPFGLTNIPTAFMRL 611
Query: 1196 MNDIFRPYLRKFVLVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASI 1255
MN +F+ +L +FV++F DDIL+YSK EH + ++ + A +
Sbjct: 612 MNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVQ--------------SEESDGEAAGAEV 657
Query: 1256 DYLGHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTE 1315
G++VD EK++ I DWP P N +R FLGL GYY++F+K + MA P+T+
Sbjct: 658 ----------GVSVDLEKIEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTK 707
Query: 1316 LTKKD-SFSWGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQ 1374
LT KD F W PE D F+ LK ++TS PVL LP P+ V DA+ G+ VLMQ+
Sbjct: 708 LTGKDVPFVWSPECDEGFMSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQR-- 765
Query: 1375 PLAFFSKALSAGNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVS 1434
GK V+TDHKSLK+ Q
Sbjct: 766 --------------------------------------GK---VFTDHKSLKYIFTQPEL 784
Query: 1435 SPDQQCWLAKLMGYQFQVKYKPGLENKAADALSRRYDEVELHSLISF------------P 1482
+ Q+ W+ + Y ++ Y G N ADALSR+ + +L+S P
Sbjct: 785 NLRQRRWMELVADYDLEIAYHSGKANVVADALSRKRVGGSVEALVSEIGALRLCVMAQEP 844
Query: 1483 LWN---DRKRLLEEITQDPYIQDLQSAVQKDPASKPGFAVQHGVLLYHGRLVLSPTSPSI 1539
L DR LL + + A K S+ FA +G +L HGR+ +
Sbjct: 845 LGLEAVDRADLLTRVRLAQEKDEGLIAASKADGSEYQFAA-NGTILVHGRVCVPKDEELR 903
Query: 1540 PWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGG 1599
+L E H S H + YR L WVGM++ V ++V CDVCQ K PGG
Sbjct: 904 REILSEAHASMFSIHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVPGG 963
Query: 1600 LLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEV 1659
LLQ LPI W+ +++DF+ GLP S+ +A+ V+VDRL+K +HF+ ++ A +A+
Sbjct: 964 LLQSLPILEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAVLLAKK 1023
Query: 1660 FVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCL 1719
+V E+V LHG+P S++SDRD F S FW GTK++MS+AYHP+TDGQ+E + L
Sbjct: 1024 YVSEIVELHGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTL 1083
Query: 1720 ESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQA-PPIVKFLSNETK 1778
E LR D W+ +S EF YN ++ +SI PFE +YGR P+ E
Sbjct: 1084 EDMLRMCVLDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERS 1143
Query: 1779 V--AAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKLR----P 1832
+ A LE +ER +R L+ ++++AQ++ YA+K+RR+L F VG+ V+LK+ P
Sbjct: 1144 IYGADYVLETTER---IRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGP 1200
Query: 1833 HRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESK-IHPVFHISLLKKAV-GN 1890
+R S KL R+ GPF+I +VG VAYRL+LP + H VFH+S+L+K + +
Sbjct: 1201 NRSIS-----ETKLTPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKD 1255
Query: 1891 YQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTWEDNVVL 1950
+V ++ DL + T + P I+ R L ++ V W + E TWE +
Sbjct: 1256 DEVLAKILEDLQPNMTLEARPVRILERRIKELRRKKIPLIKVLWNCDGVTEETWEPEARM 1315
Query: 1951 AGQFPEF 1957
F ++
Sbjct: 1316 KASFKKW 1322
Score = 55.1 bits (131), Expect = 5e-07
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 538 EDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLM--ETEDNLSWEKLKRA 595
E+ +W +R E F P E RV L +EG W+ + + ++SW
Sbjct: 165 EEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQAHMSWADFVAE 224
Query: 596 LIARYGGR----RLENPFEELSTLRQKGSVDEFVESFELLSSQVGR-LPEDQ-YLGYFMS 649
A+Y + R+E F EL+ + + SV E+ F L GR + +DQ + F+
Sbjct: 225 FNAKYFPQEALDRMEARFLELT--QGERSVREYEREFNRLLVYAGRGMQDDQAQMRRFLR 282
Query: 650 GLKPAIRRRVRTLNPGTRMEMMRIAKDVEEELKEE 684
GL+P +R R R L T+ ++ A +VEE+L+ +
Sbjct: 283 GLRPDLRVRCRVLQYATKAALVETAAEVEEDLQRQ 317
Score = 38.1 bits (87), Expect = 0.060
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 1/80 (1%)
Query: 871 VLIDSGASHNFISPAVTNALGLVITPIASRH-IRLGDGHRVVTQGVCKGIKARLGKIEVV 929
VL DSGASH FI+P + + P +++ G + G KG+ ++ +
Sbjct: 414 VLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFLAVLGRAKGVDIQIAGESMP 473
Query: 930 IDALVLELGGLDMVLGVSWL 949
+D ++ + D++LG+ WL
Sbjct: 474 VDLIISPVELYDVILGMDWL 493
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 388 bits (997), Expect = e-107
Identities = 207/515 (40%), Positives = 313/515 (60%), Gaps = 12/515 (2%)
Query: 902 IRLGDGHRVVTQGVCKGIKARLGKIEVVIDALVLELGGLDMVLGVSWLSTLGKVVMDWKL 961
+R G + + +GI + + + D +++ L D++LG+ WL K +D
Sbjct: 2 VRAAGGQAMYPTRLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKY-KGHIDCHR 60
Query: 962 LTMQFVHGNQVVKLQGLGGKGSNHSFLHSFLMDKQYRG-GMEWWWSHLNSAEVTNTEVET 1020
+QF ++K QG+ + ++ S + S + ++ G G E + A +T EV
Sbjct: 61 ERIQFERDEGMLKFQGI--RTTSGSLVISAIQAERMLGKGCEAYL-----ATITTKEVGA 113
Query: 1021 PRELMETL--EEFQEVFRSKIQLPPERSKVHQIKLFPEQETINVRPYRYPHHQKEEIERQ 1078
EL + L EF +VF + +PP+RS I+L P I+ PYR + E+++Q
Sbjct: 114 SAELKDILIVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQ 173
Query: 1079 VAELMEAGIIRPSMSAYSSPVILVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDE 1138
+ EL+ G IRPS S + +PV+ VKKKD S+R+C+DYR LNK T+ +KYP+P +DEL+D+
Sbjct: 174 LEELLAKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQ 233
Query: 1139 LNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMND 1198
L GA FSKIDL SGYHQI + D+ KTAFRT GH+E++VMPFGL NAPA F +MN
Sbjct: 234 LGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNG 293
Query: 1199 IFRPYLRKFVLVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYL 1258
+FR +L +FV++F DDIL++SK H HL+ VL L + A +K F S+ +L
Sbjct: 294 VFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFL 353
Query: 1259 GHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTK 1318
GH+IS G++VDPEK++ I +WP P+N +R FLGL GYYR+F+ + MA PLT LT
Sbjct: 354 GHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTG 413
Query: 1319 KD-SFSWGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLA 1377
KD +F+W E +++FL+LK ++ + PVL+LP P+ V DA+ G+G VLMQ+ +A
Sbjct: 414 KDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIA 473
Query: 1378 FFSKALSAGNLAKSVYEKELMALVLSIQHWRHYLL 1412
+ S+ L ++ E+ A+V +++ WR YL+
Sbjct: 474 YASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 253 bits (647), Expect = 7e-67
Identities = 148/397 (37%), Positives = 230/397 (57%), Gaps = 9/397 (2%)
Query: 1521 HGVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDY 1580
+G ++ +GR+ + +L E H S H G + YR L +WVGM+K V +
Sbjct: 534 NGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRKDVARW 593
Query: 1581 VRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLP---KSKGFEAVLVVVDR 1637
V C CQ K P GLLQ LPI W+ +++DF+T LP KSK AV VVVDR
Sbjct: 594 VAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSK-HNAVWVVVDR 652
Query: 1638 LSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTK 1697
L+K +HF+ + A+ IAE ++ E++RLHGIP S++SDRD F S FW+ K GT+
Sbjct: 653 LTKSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTR 712
Query: 1698 LKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTP 1757
+ +S+AYHP+TDGQ+E + LE LR D +W ++ EF YN +F +SIG +P
Sbjct: 713 VNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSP 772
Query: 1758 FEVVYGRQA-PPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRR 1816
+E +YGR P+ E ++ + + E E ++ L+ L++AQ++ YANK+R+
Sbjct: 773 YEALYGRACRTPLCWTPVGERRLFGPTI-VDETTERMKFLKIKLKEAQDRQKSYANKRRK 831
Query: 1817 DLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKI- 1875
+L F VG+ V+LK ++ +KL+ R+ GP+++ +VGAVAY+L LP + +
Sbjct: 832 ELEFQVGDLVYLKAMTYKGAGRFTS-RKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNVF 890
Query: 1876 HPVFHISLLKKAVGNYQVQGQ-LPADLGVDDTTDIYP 1911
H VFH+S L+K + + + + +P L + T + +P
Sbjct: 891 HNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVEAWP 927
>At4g07850 putative polyprotein
Length = 1138
Score = 371 bits (952), Expect = e-102
Identities = 202/505 (40%), Positives = 282/505 (55%), Gaps = 54/505 (10%)
Query: 1261 IISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKD 1320
+ S G+ VD EKVK I +WP PK+V VR F GL G+YR+F++D+ +A PLTE+ KK+
Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590
Query: 1321 -SFSWGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFF 1379
F W + AF LK +T PVL LP+F FE+ECDA G GIGAVLMQ ++P+A+F
Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650
Query: 1380 SKALSAGNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQ 1439
S+ L L Y+KEL ALV ++Q W+HYL KEF+++TDH+SLKH Q+ +
Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710
Query: 1440 CWLAKLMGYQFQVKYKPGLENKAADALSRRYDEVELHSLISFPLWNDRKRLLEEITQDPY 1499
W+ + + + +KYK G +N ADALSRR++
Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRRHE---------------------------- 742
Query: 1500 IQDLQSAVQKDPASKPGFAVQHGVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLR 1559
G L Y RL + P S + E HG GH G +
Sbjct: 743 ----------------------GFLFYDNRLCI-PNSSLRELFIREAHGGGLMGHFGVSK 779
Query: 1560 TYRRLATTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFI 1619
T + + +W M++ V C C++ K + P GL PLPIP W D+S+DF+
Sbjct: 780 TLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKS-QPHGLCTPLPIPLHPWNDISMDFV 838
Query: 1620 TGLPKSK-GFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDR 1678
GLP+++ G +++ VVVDR SK +HFI A IA +F REVVRLHG+P +++SDR
Sbjct: 839 VGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDR 898
Query: 1679 DPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWI 1738
D F+S+FW L+ GTKL S+ HP+TDGQTEV+NR L + LR + K+W +
Sbjct: 899 DTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCL 958
Query: 1739 SWAEFWYNTTFHSSIGQTPFEVVYG 1763
EF YN + HS+ +PF++VYG
Sbjct: 959 PHVEFAYNHSVHSATKFSPFQIVYG 983
Score = 60.5 bits (145), Expect = 1e-08
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 1029 EEFQEVFRSKIQ--LPPERSKVHQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAG 1086
+++Q+VF + LPP R HQI P N YR + +E+E+QV ELME G
Sbjct: 446 KDYQDVFPEENPEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERG 505
Query: 1087 IIRPSMSAYSSPVILVKKKDKSWR 1110
I SMS + PV+LV KKD SWR
Sbjct: 506 HICESMSPCAVPVLLVPKKDGSWR 529
Score = 49.3 bits (116), Expect = 3e-05
Identities = 112/541 (20%), Positives = 187/541 (33%), Gaps = 162/541 (29%)
Query: 459 MPPKMTDRMEALENQMGSVTTALQ-----ELALQLQQQSLTLTELSKQMGRKETGHEGDT 513
M M +R EA + ++ E L QS T T +Q +E
Sbjct: 16 MAKMMDERFEAARSNQERKNRTMRNNSDREATLSYYSQSSTRTSHRRQRRGQE------- 68
Query: 514 PIADSHPGESRLAGKKVKLPVFEGEDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGST 573
+ HP LA K+++P F + +VK+
Sbjct: 69 ---ERHPPRDNLANLKLRIPPFH------------------EYTEANKVKVAATEFYDYA 107
Query: 574 IHWFNLLMETEDNL------SWEKLKRALIARY------------------GGRRLENPF 609
+ W++ ++ T+ L +W +LK + R+ G R +E F
Sbjct: 108 LSWWDQVVTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYF 167
Query: 610 EELSTLRQKGSVDEFVESFELLSSQVGRLPEDQYLGYFMSGLKPAIRRRVRTLNPGTRME 669
+E+ TL + V E E+ + FM GL I R ++ E
Sbjct: 168 KEMETLMLRADVQEECEAT---------------MSRFMGGLNRDILDRFEVIHYENLEE 212
Query: 670 MMRIAKDVEEELKEEDEDDGKKMVKRSGFDRSGQSNWAGSSANRVGLFSRDVTRFSKPGG 729
+ A E K +KR R +KP
Sbjct: 213 LFHKAVMFE------------KQIKR---------------------------RSAKP-- 231
Query: 730 SIPSRSMSSVGSTTNSAASLGSSTRKGENDLRTGSSEKWKGVRSFQVDEIAER------- 782
S SS + + ++G +++K +V+EI+ +
Sbjct: 232 ------------------SYNSSKPSYQREEKSGFQKEYKPFVKPKVEEISSKGKEKEVT 273
Query: 783 RAKGL-CFKCGGKYHPTLHKCPERSLRVLILGDGETVDEEGEIVMLEGEPEVSEEDEAVV 841
R + L CFKC G H +R + + G+ E+ DE+ E E + E + + E +V
Sbjct: 274 RTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEVESEDEKPE----ESDVEEAPKGELLV 329
Query: 842 EYKLMGVLGRMEE--------HHTMKIEGQVDNVNLLVLIDSGASHNFISPAVTNALGLV 893
+++ VL + EE H I+G+V + ++ID G+ N S + LGL
Sbjct: 330 TMRVLSVLNKAEEQAQRENLFHTRCLIKGKVCS----LIIDGGSCTNVASETMVQKLGLE 385
Query: 894 ITPIASRHIRL----GDGHRVVTQGVCKGIKARLGKIEVVIDALVLELGGLDMVLGVSWL 949
P + +L G VT+ V + +GK E I +L L ++LG W
Sbjct: 386 EFP-HPKPYKLQWLNESGEMAVTRQV--QVPLAIGKYEDEILCDILPLEASHVLLGRPWQ 442
Query: 950 S 950
S
Sbjct: 443 S 443
>At4g16910 retrotransposon like protein
Length = 687
Score = 365 bits (937), Expect = e-100
Identities = 233/681 (34%), Positives = 369/681 (53%), Gaps = 42/681 (6%)
Query: 1309 MANPLTELTKKDS-FSWGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGA 1367
MA P+T+LT KD+ F+W E +R+FL+LK ++T+ PVL+LP P+ V DA+ G+G
Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60
Query: 1368 VLMQQRQPLAFFSKALSAGNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKH 1427
VL+Q+ +A+ S+ L + E+ A+V +++ WR YL G + ++TDHKSLK+
Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120
Query: 1428 FLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLENKAADALSR-------RYDEVELHSLIS 1480
Q + Q+ W+ + Y + Y PG N+ DALSR ++V L +++
Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAERNQVNLVNMMG 180
Query: 1481 FPLWNDRKRLLEEI-----TQDPYIQDLQSAVQKDPASKPGFAVQH---------GVLLY 1526
N + +E + Q + ++SA ++D K G+A + G ++
Sbjct: 181 TLHLNALSKEVEPLGLRAANQADLLSRIRSAQERDEEIK-GWAQNNKTEYQSSNNGTIVV 239
Query: 1527 HGRLVLSPTSPSIPW-LLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYVRACD 1585
+GR V P ++ +L+E H S H G + YR L +WVGM+K V +V
Sbjct: 240 NGR-VCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAK-- 296
Query: 1586 VCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLP---KSKGFEAVLVVVDRLSKYS 1642
+ H+ P G+LQ LPIP W+ + +DF+TGLP KSK AV VVVDRL+K +
Sbjct: 297 --EEHQV----PSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSK-HNAVWVVVDRLTKSA 349
Query: 1643 HFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSS 1702
HF+ + A+ IAE ++ E+VRLHGIP S++SDRD F S FW K+ GT++ +S+
Sbjct: 350 HFMAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLST 409
Query: 1703 AYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVY 1762
AYHP+TDGQ+E + LE LR D +W ++ EF YN +F +SIG +P+E +Y
Sbjct: 410 AYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALY 469
Query: 1763 GRQA-PPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFA 1821
GR P+ E ++ A+ + E + ++ L+ L++AQ++ YANK+R++L F
Sbjct: 470 GRAGRTPLCWTPVGERRLFGPAV-VDETTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQ 528
Query: 1822 VGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAE-SKIHPVFH 1880
VG+ V+LK ++ +KL R+ GP+++ +VGAVAY+L LP + H VFH
Sbjct: 529 VGDLVYLKAMTYKGAGRFTS-RKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFH 587
Query: 1881 ISLLKKAVGNYQVQGQ-LPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSM 1939
+S L+K + + + +P L + T + +P I+ + + W
Sbjct: 588 VSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGR 647
Query: 1940 EEVTWEDNVVLAGQFPEFCLE 1960
EE TWE + FPE+ E
Sbjct: 648 EEYTWETETKMKANFPEWFKE 668
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 307 bits (787), Expect = 4e-83
Identities = 154/316 (48%), Positives = 208/316 (65%), Gaps = 4/316 (1%)
Query: 1650 PYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETD 1709
P ++S+A FV VV+LHGIP S++SD DPIF+S FW E +KL TKL MS+AYHP+TD
Sbjct: 628 PLLSRSVAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTD 687
Query: 1710 GQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQAPPI 1769
GQTEV+NRC+E +LRCF HPK WS +I WAE+WYNTTFH+S G TPF+ +YGR PI
Sbjct: 688 GQTEVVNRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRPPSPI 747
Query: 1770 VKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLK 1829
+ + +++ RDE L +L+ HL A M A+ + RD+SF VG+WV L+
Sbjct: 748 PAYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLR 807
Query: 1830 LRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKIHPVFHISLLKKAVG 1889
++P+RQ ++ +R +QKL+ RFYGPFQ+ +K G VAYRL LP ++IHPVFH+SLLK VG
Sbjct: 808 IQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRIHPVFHVSLLKPWVG 867
Query: 1890 NYQV-QGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTWEDNV 1948
+ + GQLP L + + P ++ R V LV+W+ +E+ TWE+
Sbjct: 868 DGEPDMGQLP-PLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYD 926
Query: 1949 VLAGQFPEFC--LEDK 1962
LA FPEF LEDK
Sbjct: 927 QLAASFPEFVLNLEDK 942
Score = 244 bits (622), Expect = 5e-64
Identities = 151/413 (36%), Positives = 219/413 (52%), Gaps = 47/413 (11%)
Query: 814 DGETVDEEGEIVMLEGEPEVSEEDEAVVEYKLMGVLGRMEEHHTMKIEGQVDNVNLLVLI 873
D E V+EE EG+PE++ Y L GV + T+++ + L+ LI
Sbjct: 287 DDEAVEEES--TEAEGKPEITL-------YALEGV----DTTSTIRVRATIHRNRLIALI 333
Query: 874 DSGASHNFISPAVTNALGLVITPIASRHIRLGDGHRVVTQGVCKGIKARLGKIEVVIDAL 933
+SG++HNFI + L T +R+ +G +V + + I +G + +
Sbjct: 334 NSGSTHNFIGEKAVRGMNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLY 393
Query: 934 VLELGGLDMVLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQGLGGKGSNHSFLHSFLM 993
L L GLD+ +GV WLSTLG + +WK T+QF V+L G+ G H +
Sbjct: 394 ALPLMGLDLAMGVQWLSTLGPTLCNWKEQTLQFHWAGDEVRLMGIKPTGLR-GVEHKTIT 452
Query: 994 DKQYRGGMEWWWSHLNSAEVTNTEVETPRELMETLEEFQEVFRSKIQLPPERSKVHQIKL 1053
K G + + +++ NT E+ + +EEF +F + QLP ER VH+I L
Sbjct: 453 KKARMGHTIFAITMAHNSSDPNTP---DGEIKKLIEEFAGLFETPTQLPSERPIVHRIAL 509
Query: 1054 FPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRPSMSAYSSPVILVKKKDKSWRMCV 1113
+ +NVRPYRY +QK+E+ R AGIIRPS S + SPV+L
Sbjct: 510 KKGTDPVNVRPYRYAFYQKDEMSR-------AGIIRPSSSPFLSPVLL------------ 550
Query: 1114 DYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHN 1173
+++PIP VD++LDELNGA F+K+DL +GY Q+R+H DI K AF+THN
Sbjct: 551 -----------ERFPIPTVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAFQTHN 599
Query: 1174 GHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHL 1226
GHYEYLVMPFGL NAP+TFQA+MN+IF P L + V F ++ +P +
Sbjct: 600 GHYEYLVMPFGLCNAPSTFQALMNEIFWPLLSRSVAAKFVSHVVKLHGIPRSI 652
Score = 55.1 bits (131), Expect = 5e-07
Identities = 42/173 (24%), Positives = 71/173 (40%), Gaps = 32/173 (18%)
Query: 505 KETGHEG--DTPIADSHPGESRLAGKKVKL--PVFEGEDPVAWITRAEIYFDVQNTPDEM 560
+ TG+ G D P A + + KL P F G D W+++A+ YF+ P E
Sbjct: 77 QSTGNRGEPDNPFAAVTANNNNAIARPSKLDFPRFHGGDLTKWLSKAKQYFEYHEGPVEQ 136
Query: 561 RVKLTRLSMEGSTIHWFNLLMETEDNLSWEKLKRALIARYGGRRLENPFEELSTLRQKGS 620
V+ T ++G W W+ R +T+ Q GS
Sbjct: 137 AVRFTTFHLDGVANGW------------WQATLR----------------RSATIGQTGS 168
Query: 621 VDEFVESFELLSSQVGRLPEDQYLGYFMSGLKPAIRRRVRTLNPGTRMEMMRI 673
+ E+ FE L ++V ++ +G FM+GL +I +R P + E++ +
Sbjct: 169 LSEYQHEFEWLQNKVYGWTQEVLVGAFMNGLYYSISNGIRMFQPRSLREVINL 221
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 303 bits (777), Expect = 6e-82
Identities = 242/860 (28%), Positives = 381/860 (44%), Gaps = 110/860 (12%)
Query: 1049 HQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRP-SMSAYSSPVILVKKKD- 1106
H+I L E + R + KE +++++ +L++AG+I P S S + SPV V KK
Sbjct: 889 HRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGG 948
Query: 1107 -----------------KSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKID 1149
RMC++YR LN A+ + +P+P +D +L+ L + +D
Sbjct: 949 MTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLD 1008
Query: 1150 LKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVL 1209
SG+ QI +H +D KT F G + Y MPFGL NAPATFQ M IF + + V
Sbjct: 1009 SYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVE 1068
Query: 1210 VFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAV 1269
VF DD +Y L +L VL V N KC F LG IS G+ V
Sbjct: 1069 VFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEV 1128
Query: 1270 DPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTE-LTKKDSFSWGPEA 1328
D K+ +M PK VK +R FLG G+YR FIKD+ K+A PLT L K+ F++ E
Sbjct: 1129 DKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDEC 1188
Query: 1329 DRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNL 1388
AF +K + + P++ PN+ PFE+ + M Q +
Sbjct: 1189 LTAFKLIKEALITAPIVQAPNWDFPFEI-----------ITMDDAQ-------------V 1224
Query: 1389 AKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGY 1448
+ EKEL+A+V + + +R YL+G + +YTDH +L+H +K + P W+ L +
Sbjct: 1225 RYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEF 1284
Query: 1449 QFQVKYKPGLENKAADALSRR--YDEVELHSLI--------------SFPLWNDRKRLLE 1492
++ K G+EN AD LSR DEV + + P + D L
Sbjct: 1285 DMEIVDKKGIENGVADHLSRMRIEDEVLIDDSMPEEQLMAIQQLNEKKLPWYADHVNYLV 1344
Query: 1493 EITQDPYIQDLQSAVQKDPASKPGFAVQHGVLLYHGRLVLSPTS-PSIPWLLEEFHGSPS 1551
+ P + + + + + L ++ + S I +L HG
Sbjct: 1345 SGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIEGILLHCHGFAY 1404
Query: 1552 GGHSGFLRTYRR-LATTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGGLLQPLPIPNAV 1610
GGH +T + L +W M K ++++ CD + V
Sbjct: 1405 GGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFENFD------------------V 1446
Query: 1611 WEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGI 1670
W +DF+ P S G + +LV +D +SK+ I H A+ + ++F + G+
Sbjct: 1447 W---GIDFMGPFPSSYGNKYILVAIDYVSKWVEAI-ASHTNDARVVLKLFKTIIFPRFGV 1502
Query: 1671 PNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDH 1730
P VISD F++ + L K G K K T GQ E+ NR +++ L
Sbjct: 1503 PRIVISDGGKHFINKGFENLLKKHGVKHK--------TSGQVEISNREIKAILEKTVGST 1554
Query: 1731 PKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGR----------QAPPIVKFLSNETKVA 1780
K WS ++ + Y T F + IG TPF ++YG+ +A VK L+ + K A
Sbjct: 1555 RKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTA 1614
Query: 1781 AV--ALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKLRPHRQHSV 1838
++L++ ++ + + +E+ + +KK F VG+ V L +S
Sbjct: 1615 EEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLL------FNSR 1668
Query: 1839 VKRINQKLAARFYGPFQIEA 1858
++ KL +R+ GPF + A
Sbjct: 1669 LRLFPGKLKSRWSGPFSVTA 1688
>At4g08100 putative polyprotein
Length = 1054
Score = 296 bits (757), Expect = 1e-79
Identities = 156/342 (45%), Positives = 210/342 (60%), Gaps = 29/342 (8%)
Query: 1114 DYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHN 1173
D RA+N T+ ++PIP +D+ LD+L+G+SIFSKIDLKSGYHQ R+ E D KTA +T
Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586
Query: 1174 GHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHLTHLKLVL 1233
YE+LVMPFGL NAP TF +MN + R ++ FV+V+FDDIL+YSK+L H+ HLKLVL
Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646
Query: 1234 SVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFL 1293
+L AN KC F ++ +LG ++S G+ VD EKVK I +WP PKNV
Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNVSE----- 701
Query: 1294 GLTGYYRKFIKDYGKMANPLTELTKKDSFSWGPEADRAFLQLKRVMTSPPVLILPNFTLP 1353
KD G F W + AF LK +T+ V ILPNF
Sbjct: 702 ----------KDIG--------------FKWEDAQENAFQALKEKLTNSSVPILPNFMKS 737
Query: 1354 FEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMALVLSIQHWRHYLLG 1413
FE+ECDA+G GIGAVLMQ +P+A+FS+ L L Y+KEL ALV ++Q W+HYL
Sbjct: 738 FEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWP 797
Query: 1414 KEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYK 1455
K+F+++TDH+SLKH Q+ + W+ + + + +KYK
Sbjct: 798 KKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYK 839
Score = 49.7 bits (117), Expect = 2e-05
Identities = 36/126 (28%), Positives = 67/126 (52%), Gaps = 5/126 (3%)
Query: 1750 HSSIGQTPFEVVYGRQAPPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAI 1809
HS+ +PFE+VYG + + + + +L+ ++D+ ++Q+ +L+ +Q
Sbjct: 851 HSATKFSPFEIVYGFKPTSPLDLIPLPLSERS-SLDGKKKDDLVQQVL-NLEARTKQYKK 908
Query: 1810 YANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKL 1869
YANK R+++ F G+ V++ LR R V + KL R GPF++ ++ AY+L L
Sbjct: 909 YANKGRKEVIFNEGDQVWVHLRKKRFPEVR---SSKLMPRIDGPFKVLKRINNNAYKLDL 965
Query: 1870 PAESKI 1875
S +
Sbjct: 966 QDTSDL 971
Score = 44.7 bits (104), Expect = 6e-04
Identities = 43/182 (23%), Positives = 75/182 (40%), Gaps = 19/182 (10%)
Query: 520 PGESRLAGKKVKLPVFEGEDP----VAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIH 575
P L G K+K+P F G D + W + E+ F Q +VK+ +
Sbjct: 84 PPRDPLGGLKLKIPAFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALS 143
Query: 576 WFNLLMETEDNL------SWEKLK----RALIARYGGRRLENPFEELSTLRQKGSVDEFV 625
W++ L+ + +W +LK + + Y R L L ++ +V+E+
Sbjct: 144 WWDQLVTSRRRTRDYPIKTWNQLKFVMRKRFVPSYYHRELHQRLRNL--VQGSKTVEEYF 201
Query: 626 ESFELLSSQVGRLPED--QYLGYFMSGLKPAIRRRVRTLNPGTRMEMMRIAKDVEEELKE 683
E L + L ED + FM GL I+ R+ T + EM+ A E+++K
Sbjct: 202 LEMETLMLRAD-LQEDGEAVMSRFMGGLNREIQDRLETQHYVELEEMLHKAVMFEQQIKR 260
Query: 684 ED 685
++
Sbjct: 261 KN 262
>At4g07830 putative reverse transcriptase
Length = 611
Score = 281 bits (719), Expect = 3e-75
Identities = 190/560 (33%), Positives = 286/560 (50%), Gaps = 42/560 (7%)
Query: 1418 VYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLENKAADALSR-RYDEVELH 1476
V+TDHKSLK+ Q + + W+ + Y ++ Y PG N DALSR R
Sbjct: 31 VFTDHKSLKYIFTQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQ 90
Query: 1477 SLISFPLWNDRKRL---------LEEITQDPYIQDLQSAVQKDP----ASKP-GFAVQ-- 1520
S+ + + RL LE + Q + +Q A +KD ASK GF Q
Sbjct: 91 SVETLVIEIGALRLCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAEGFEYQFA 150
Query: 1521 -HGVLLYHGRLVLSPTSPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRD 1579
+G +L HGR+ + +L E H S H G + YR L WVGM++ V +
Sbjct: 151 ANGTILVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGN 210
Query: 1580 YVRACDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLS 1639
+V CDVCQ K G LLQ LPIP W+ +++DF+ GLP S+ +A+ V+VDRL+
Sbjct: 211 WVEECDVCQLVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLT 270
Query: 1640 KYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLK 1699
K +HF+ ++ A +A+ +V E+V+LHG+P S++SDRD F S FW GTK++
Sbjct: 271 KSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQ 330
Query: 1700 MSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFE 1759
MS+AYHP+TDGQ+E + LE LR D W+ +S EF YN ++ +SIG PFE
Sbjct: 331 MSTAYHPQTDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFE 390
Query: 1760 VVYGRQAPPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLS 1819
V+YGR + E + A + E E +R L+ ++++AQ + YA+K+R++L
Sbjct: 391 VLYGRPCRTLCWTQVGERSIYG-ADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKELE 449
Query: 1820 FAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESK-IHPV 1878
F VG+ V Q V R Q +VG VA+RL+L + H V
Sbjct: 450 FEVGDSV-------SQDGHVARSEQ--------------RVGPVAFRLELSDVMRAFHKV 488
Query: 1879 FHISLLKKAV-GNYQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHK 1937
FH+S+L+K + + +V ++P DL + T + P ++ R L ++ V
Sbjct: 489 FHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLRNCD 548
Query: 1938 SMEEVTWEDNVVLAGQFPEF 1957
+ E TWE L +F ++
Sbjct: 549 GVTEETWEPEARLKARFKKW 568
>At4g03650 putative reverse transcriptase
Length = 839
Score = 270 bits (691), Expect = 5e-72
Identities = 130/295 (44%), Positives = 186/295 (62%), Gaps = 1/295 (0%)
Query: 1161 EDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSK 1220
E D+ KTAFRT GH+E++VMPFGL NAPA F +MN +F+ +L +FV++F DDIL+YSK
Sbjct: 518 EADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSK 577
Query: 1221 DLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDW 1280
EH HL+ V+ L A +KC F + +LGHI+S G++VDPEK++ I DW
Sbjct: 578 SPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 637
Query: 1281 PVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKD-SFSWGPEADRAFLQLKRVM 1339
P P N +R FLGL GYYR+FIK + MA P+T+LT KD F W PE + F+ LK ++
Sbjct: 638 PRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEML 697
Query: 1340 TSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMA 1399
TS PVL LP P+ V DA+G G+G LMQ+ + +A+ S+ L ++ E+ A
Sbjct: 698 TSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAA 757
Query: 1400 LVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKY 1454
++ +++ WR YL G + V+TDHKSLK+ Q + Q+ W+ + Y ++ Y
Sbjct: 758 VIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAY 812
Score = 54.3 bits (129), Expect = 8e-07
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 538 EDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLM--ETEDNLSWEKLKRA 595
E+ +W ++ E F P E RV LT +EG W+ + + ++SW
Sbjct: 163 EEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRSVTARRRQADMSWADFMAE 222
Query: 596 LIARYGGR----RLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQY--LGYFMS 649
A+Y R R+E F EL+ + SV E+ F L GR ED + F+
Sbjct: 223 FNAKYFPREALDRMEARFLELT--QGVRSVREYDRKFNRLLVYAGRGMEDDQAQMRRFLR 280
Query: 650 GLKPAIRRRVRTLNPGTRMEMMRIAKDVEEELKEE 684
GL+P +R R R T+ ++ A +VEE+L+ +
Sbjct: 281 GLRPNLRVRCRVSQYATKAALVETAAEVEEDLQRQ 315
Score = 48.9 bits (115), Expect = 3e-05
Identities = 41/188 (21%), Positives = 82/188 (42%), Gaps = 23/188 (12%)
Query: 902 IRLGDGHRVVTQGVCKGIKARLGKIEVVIDALVLELGGLDMVLGVSWLSTLGKVVMDWKL 961
+++ G + G KG+ ++ + D ++ + D++LG+ WL +V +D
Sbjct: 358 VKVAGGQFLAVLGGAKGVDIQIAGESLPADLIISHVELYDVILGMDWLDHY-RVHLDCHR 416
Query: 962 LTMQFVHGNQVVKLQGLGGKGSNHSFLHSFLMDKQYRGGMEWWWSHLNSAEVTNTEVETP 1021
+ F + +G G+ ++ L D Y G +V +++
Sbjct: 417 GRVSFE------RPEGSAGRENDREGLRGLPGDDIYAGVC---------GQVAVSDIRV- 460
Query: 1022 RELMETLEEFQEVFRSKIQLPPERSKVHQIKLFPEQETINVRPYRYPHHQKEEIERQVAE 1081
++EFQ VF+S LPP RS I+L P+ ++ PYR + E+++Q+ +
Sbjct: 461 ------VQEFQYVFQSLQGLPPSRSDPFTIELEPKTAPLSKAPYRMAPAKMAELKKQLED 514
Query: 1082 LMEAGIIR 1089
L+ +R
Sbjct: 515 LLAEADVR 522
Score = 35.4 bits (80), Expect = 0.39
Identities = 13/19 (68%), Positives = 18/19 (94%)
Query: 1695 GTKLKMSSAYHPETDGQTE 1713
GTK++MS+ YHP+TDGQ+E
Sbjct: 818 GTKVQMSTTYHPQTDGQSE 836
>At1g20390 hypothetical protein
Length = 1791
Score = 220 bits (561), Expect = 7e-57
Identities = 167/622 (26%), Positives = 290/622 (45%), Gaps = 53/622 (8%)
Query: 871 VLIDSGASHNFISPAVTNALGLV---ITPIASRHIRLGDGHRVVTQGVCKGIKARLGKIE 927
VLID+G+S + I V A+ + I P+ S+ + DG V+T G K
Sbjct: 585 VLIDTGSSVDLIFKDVLTAMNITDRQIKPV-SKPLAGFDGDFVMTIGTIK---------- 633
Query: 928 VVIDALVLELGGLDMVLGVSWLS--TLGKVVMDWKLLTMQFVHGNQVV-KLQGLGGKGSN 984
L + +GGL ++W+ +GK + +L ++H Q + K
Sbjct: 634 -----LPIFVGGL-----IAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPT 683
Query: 985 HSFLHSFLMDKQYRG-GMEWWWSHLNSAEVTNTEVETPRELMETLEEFQEVFRSK-IQLP 1042
H+ + + K+ + + S L E+ N + P + E R + I L
Sbjct: 684 HNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAEISPSIRLELIALL 743
Query: 1043 PERSKV-----------------HQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEA 1085
SK H++ + P + + + + + + +V +L++A
Sbjct: 744 KRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKA 803
Query: 1086 G-IIRPSMSAYSSPVILVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASI 1144
G II + + ++VKKK+ WR+CVDY LNKA D YP+P +D L++ +G +
Sbjct: 804 GQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGL 863
Query: 1145 FSKIDLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYL 1204
S +D SGY+QI +H+DD EKT+F T G Y Y VM FGL NA AT+Q +N + +
Sbjct: 864 LSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQI 923
Query: 1205 RKFVLVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISG 1264
+ V V+ DD+L+ S +H+ HL VL N TKC FG S ++LG++++
Sbjct: 924 GRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTK 983
Query: 1265 AGMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDS-FS 1323
G+ +P++++ I++ P P+N + V+ G +FI P L K+ + F
Sbjct: 984 RGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFD 1043
Query: 1324 WGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQ----QRQPLAFF 1379
W +++ AF +LK +++PP+L+ P + + + +VL++ +++P+ +
Sbjct: 1044 WDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYT 1103
Query: 1380 SKALSAGNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQ 1439
SK+L V EK +A+V S + R Y V TD + L+ L S
Sbjct: 1104 SKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMT 1162
Query: 1440 CWLAKLMGYQFQVKYKPGLENK 1461
W +L Y + +P ++++
Sbjct: 1163 KWAVELSEYDIDFRPRPAMKSQ 1184
Score = 90.9 bits (224), Expect = 8e-18
Identities = 85/344 (24%), Positives = 148/344 (42%), Gaps = 30/344 (8%)
Query: 1542 LLEEFHGSPSGGHSGFLRTYRRLATT-LYWVGMQKRVRDYVRACDVCQRHKYSALSPGGL 1600
+++E H +G HSG +L YW M + + C+ CQRH + P L
Sbjct: 1438 IMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTEL 1497
Query: 1601 LQP--LPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKY---SHFILLKHPYTAKS 1655
L+ P P W ++D + +P S+ +LV+ D +K+ + ++ A
Sbjct: 1498 LRAGVAPYPFMRW---AMDIVGPMPASRQKRFILVMTDYFTKWVEAESYATIR----AND 1550
Query: 1656 IAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVI 1715
+ + ++ HG+P +I+D F+S + +L S+ +P+ +GQ E
Sbjct: 1551 VQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEAT 1610
Query: 1716 NRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQ--APPIVKFL 1773
N+ + S L+ + +W+ + + Y TT S+ QTPF YG + AP V +
Sbjct: 1611 NKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYS 1670
Query: 1774 SNETKVAAVALELSERD-----EALRQLRG----HLQKAQEQMAIYANKKRRDLSFAVGE 1824
S + EL++R + L ++R +Q Q A + N+K + F VG+
Sbjct: 1671 SLRRSMMVKNPELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGD 1730
Query: 1825 WVFLKLRPHRQHSVVKRINQ-KLAARFYGPFQIEAKVGAVAYRL 1867
V K+ + IN KL A + G +Q+ V Y L
Sbjct: 1731 LVLRKVFEN-----TAEINAGKLGANWEGSYQVSKIVRPGDYEL 1769
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 204 bits (518), Expect = 6e-52
Identities = 145/441 (32%), Positives = 214/441 (47%), Gaps = 72/441 (16%)
Query: 1048 VHQIKLFPEQETINVRPYRYPHHQKEEIERQVAELMEAGIIRP-SMSAYSSPVILVKKKD 1106
+H I L E T R + ++ +++++ +L++AGII P S S + SPV +V KK
Sbjct: 363 MHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLDAGIIYPISDSTWVSPVHVVPKKG 422
Query: 1107 ------------------KSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKI 1148
RMC+DYR LN AT D +P+ +D++L+ L+ + +
Sbjct: 423 GVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKDNFPLSFIDQMLERLSNQPYYCFL 482
Query: 1149 DLKSGYHQIRVHEDDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFV 1208
D G+ QI +H DD EKT F G + Y MPFGL NAPATFQ M IF + F+
Sbjct: 483 DGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQHCMKYIFSDMIEDFM 542
Query: 1209 LVFFDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMA 1268
VF DD L+ + +HL V N K F LGH IS G+
Sbjct: 543 EVFIDDFLVLQRCEDKHL---------------VLNWEKSHFMVRDGIVLGHKISEKGVE 587
Query: 1269 VDPEKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDSFS-WGPE 1327
VD K++ + FLG G+YR+FIKD+ K+A P T+L K+ S +
Sbjct: 588 VDRAKIE-------------IMRFLGHAGFYRRFIKDFSKIARPCTQLLCKEQKSEFDDT 634
Query: 1328 ADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGN 1387
+AF +K + S ++ P + LPFEV CDA+ +GAVL Q++
Sbjct: 635 CLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYVVGAVLGQRK-------------- 680
Query: 1388 LAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCWLAKLMG 1447
+K+L A I + L G + IV+T H +L++ L +K + P W+ L
Sbjct: 681 ------DKKLHA----IYYASRTLDGAQVIVHTVHAALRYLLSKKDAKPRLLRWILLLQD 730
Query: 1448 YQFQVKYKPGLENKAADALSR 1468
+ ++K K G+EN+ AD LSR
Sbjct: 731 FDLEIKDKKGIENEVADNLSR 751
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.336 0.147 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,243,568
Number of Sequences: 26719
Number of extensions: 2058865
Number of successful extensions: 9215
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 8820
Number of HSP's gapped (non-prelim): 253
length of query: 2281
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2166
effective length of database: 8,245,911
effective search space: 17860643226
effective search space used: 17860643226
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0074.19