BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.13
         (50 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g23550 unknown protein                                              62  7e-11
At5g25580 unknown protein                                              26  4.4
At3g58110 putative protein                                             25  7.5
At3g15560 hypothetical protein                                         25  7.5
At5g54410 unknown protein                                              25  9.8

>At5g23550 unknown protein
          Length = 175

 Score = 61.6 bits (148), Expect = 7e-11
 Identities = 28/50 (56%), Positives = 41/50 (82%), Gaps = 3/50 (6%)

Query: 1  MEKMSKAFEKVKIMVGMEVEDEEQQAAALDNDNSFAFMDEFNRNCTLSTK 50
          M+KM++A EK+K++VGMEVEDE+Q   A D ++S +FM++ NRNC L+TK
Sbjct: 1  MDKMNQAIEKMKMLVGMEVEDEQQ---AADEESSLSFMEDLNRNCALTTK 47


>At5g25580 unknown protein
          Length = 405

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 15/32 (46%), Positives = 21/32 (64%), Gaps = 1/32 (3%)

Query: 4   MSKAFEKVKIMVGMEVEDEEQQAAALD-NDNS 34
           +S A E+ +   G EVE  +QQ+A+LD ND S
Sbjct: 328 ISDAVEETEDTDGDEVEGRDQQSASLDSNDKS 359


>At3g58110 putative protein
          Length = 784

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 23  EQQAAALDNDNSFAFMDEFNRNCTL 47
           E++   L+ND S  F+DE    C L
Sbjct: 215 EEERELLENDESVRFIDEIVSTCVL 239


>At3g15560 hypothetical protein
          Length = 471

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 13/47 (27%), Positives = 26/47 (54%)

Query: 1   MEKMSKAFEKVKIMVGMEVEDEEQQAAALDNDNSFAFMDEFNRNCTL 47
           + K  K  E+++ +V  E+E   +++  L ND     +D+ +RN +L
Sbjct: 140 LHKKFKEREELENLVKPELEKARKRSRLLLNDEDDLLLDDRDRNLSL 186


>At5g54410 unknown protein
          Length = 219

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 20  EDEEQQAAALDNDNSFAFMDEFNRNC 45
           E+EE +   + ND  F   D +N+ C
Sbjct: 157 EEEELEIKRISNDARFCLHDNYNKCC 182


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.313    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,035,395
Number of Sequences: 26719
Number of extensions: 28706
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 5
length of query: 50
length of database: 11,318,596
effective HSP length: 26
effective length of query: 24
effective length of database: 10,623,902
effective search space: 254973648
effective search space used: 254973648
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)