BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0072a.9
         (239 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g55720 unknown protein                                              32  0.39
At2g47710 unknown protein                                              29  2.5
At1g68400 receptor kinase like protein                                 28  4.3
At4g39370 unknown protein                                              28  5.7
At1g64570 hypothetical protein                                         27  9.7

>At3g55720 unknown protein
          Length = 438

 Score = 31.6 bits (70), Expect = 0.39
 Identities = 28/109 (25%), Positives = 46/109 (41%), Gaps = 16/109 (14%)

Query: 129 VGHSEGKSRPAGLGLIRLCQGFDPCTCYLCLGGYVCLFCQMSSMDSFVILR-------RS 181
           + HS   + P+G  L R  QG DP T      G VC+  +  + +   +L+         
Sbjct: 213 LAHSHASNEPSG-PLRRFLQGLDPKTTANLFAGSVCVGEKAVNNEECFVLKLETQPSGLK 271

Query: 182 GKTRSEMTTTEPSTW----TRTSYMTRWGDC----VSMELEDEMMTSYE 222
            +++S M T + + W     RT  + +  D     +   LEDE M  +E
Sbjct: 272 SRSKSGMETVKHTVWGCFGQRTGLLVQLEDTYLVRIKTGLEDEDMVLWE 320


>At2g47710 unknown protein
          Length = 162

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 75  EEFQGE-EGIECEGTFEENAGITIVYAFGYSLYLRVIRASTGDMIDRMVRIDLLIV 129
           E F+G+   I CE   + +A I +V + GY    R +  ST D         ++IV
Sbjct: 100 EVFEGDARNILCEVVDKHHASILVVGSHGYGAIKRAVLGSTSDYCAHHAHCSVMIV 155


>At1g68400 receptor kinase like protein
          Length = 670

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 17/43 (39%), Positives = 19/43 (43%), Gaps = 6/43 (13%)

Query: 164 CLFCQMSSMDSFVILR------RSGKTRSEMTTTEPSTWTRTS 200
           CL    SS DS  +L        +GK  S  TTT P  WT  S
Sbjct: 22  CLLSSSSSTDSETLLNFKLTADSTGKLNSWNTTTNPCQWTGVS 64


>At4g39370 unknown protein
          Length = 494

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (61%)

Query: 5   RHYRQWLLKEGREGLGKEKDDHCSLVFAL 33
           R + QW+L++ R  L  E+++   L FAL
Sbjct: 99  RSFLQWVLEDARGSLAGEQEEQLPLTFAL 127


>At1g64570 hypothetical protein
          Length = 1239

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 10/63 (15%)

Query: 36   DGISDCVTYLQEINLLDGFLLEGTPLSVA--------YVKFPCMGSFEEFQGEEGIECEG 87
            D IS C+  + + + L G ++E   LS +        +V+F C     + +GEEG ECE 
Sbjct: 1058 DNISRCIEEMADQSNL-GIVMEQEELSDSDDEMMEEEHVEFECE-EMADSEGEEGSECEE 1115

Query: 88   TFE 90
              E
Sbjct: 1116 NIE 1118


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.141    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,712,334
Number of Sequences: 26719
Number of extensions: 243020
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 5
length of query: 239
length of database: 11,318,596
effective HSP length: 96
effective length of query: 143
effective length of database: 8,753,572
effective search space: 1251760796
effective search space used: 1251760796
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)