BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0065.12
(1309 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45520 copia-like polyprotein 292 8e-79
At2g21310 putative retroelement pol polyprotein 280 3e-75
At2g07550 putative retroelement pol polyprotein 279 7e-75
At2g13930 putative retroelement pol polyprotein 268 2e-71
At4g10460 putative retrotransposon 263 6e-70
At1g37110 259 7e-69
At2g21460 putative retroelement pol polyprotein 256 5e-68
At5g35820 copia-like retrotransposable element 256 8e-68
At1g47360 polyprotein, putative 254 3e-67
At4g21360 putative transposable element 243 5e-64
At2g19840 copia-like retroelement pol polyprotein 234 2e-61
At4g04600 putative polyprotein 196 7e-50
At4g03810 putative retrotransposon protein 188 2e-47
At4g04440 putative transposon protein 177 4e-44
At3g60170 putative protein 172 1e-42
At1g32590 hypothetical protein, 5' partial 169 1e-41
At1g48710 hypothetical protein 163 7e-40
At1g58140 hypothetical protein 162 9e-40
At4g04280 putative transposon protein 162 2e-39
At3g59720 copia-type reverse transcriptase-like protein 162 2e-39
>At3g45520 copia-like polyprotein
Length = 1363
Score = 292 bits (748), Expect = 8e-79
Identities = 181/536 (33%), Positives = 279/536 (51%), Gaps = 43/536 (8%)
Query: 1 GAKFEVTRFYGTGNFGLWHRRVK---DLLA--------------QQSLQKALRDEKPTDI 43
GA+ EV +F G G++ +W ++ D+L ++ +K+ DEK
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62
Query: 44 ATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRL 103
+ E K KA S I L VSD ++ I T+ + + L+ LYMSK L N+++ KQ+L
Sbjct: 63 KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122
Query: 104 YSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTY-- 161
YS KM E ++ ++ F +I+ADL L V V DED+AI+LL SLP +D L TL Y
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182
Query: 162 GKDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSK 221
GK + LD +++ + SV++ + L+VK + RG+ + D GK KRSK
Sbjct: 183 GKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVK-DKAENRGRSEQKDKGKGKRSK 241
Query: 222 SKDRKTAECYSCKQIGHWKRDCPNR----------------PGKSSNSNSSANVVQSDGS 265
SK ++ C+ C + GH K CPN+ GK + S N V+S G
Sbjct: 242 SKSKR--GCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNFVESAGM 299
Query: 266 CSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMR 325
E L + + D W++D+GC YHMT REW F G V +G+ +KG+
Sbjct: 300 FVSE-ALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISRVKGVG 358
Query: 326 QVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMR 385
V+I D+G TL VRY+P++ +N++SLGT + G+ F+SE +LR+ G ++
Sbjct: 359 TVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENG--MLRIKSGNQVLLE 416
Query: 386 AKRTAGNIYKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSC 445
+R +Y L G + +V +D T +WH RL H+S++ M L K+ L +
Sbjct: 417 GRR-YDTLYILHGKPATDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVS 475
Query: 446 TIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYFLHLL 500
+ C+ C+ G+ ++ F QH TK L+YVHSD+WG PT S+G +YF+ +
Sbjct: 476 MLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFI 531
Score = 235 bits (600), Expect = 1e-61
Identities = 118/236 (50%), Positives = 158/236 (66%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG + G+ F+PVV+H SIR +L++VA ++ LEQ+DVKT FLHG L+E+IYM
Sbjct: 915 KGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELEQLDVKTAFLHGELKEKIYMMP 974
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEG VC L +SLYGLKQ+PRQ ++F+ YM IG++R DYD C Y + L D
Sbjct: 975 PEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYMTEIGFKRSDYDSCAYTKKLSDD 1034
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S ++LL YVDDML+AAN++ ++ LK +L +F+MKDLGAAKKILG+EI DR LWL
Sbjct: 1035 STMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKILGIEIIIDREAGVLWL 1094
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+SY+ VL F+M + P TPL H K+ K +E E M+ +PY+SAVG
Sbjct: 1095 SQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSAVG 1150
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 280 bits (717), Expect = 3e-75
Identities = 177/525 (33%), Positives = 282/525 (53%), Gaps = 46/525 (8%)
Query: 5 EVTRFYGTGNFGLW------HRRVKDLLAQQSLQKALRDEKPTD------IATVD--WNE 50
EV + G G++ LW H + LL +A+ +E+ T T D E
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 51 MKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQE 110
+ KA S + L + + ++ ++ T + L+ L+M+K+L N+++ KQRLY KM +
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 111 GGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDS 170
++ +V F +++DL ++V V DED+AI+LL SLP +D L TL YGK ++ LD
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLALDE 186
Query: 171 ISSTLLQHAQRRQSVEEGGGS------SGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKD 224
I+ + R V E G S S LFV+ +GR+ + K+ + K +S+SK
Sbjct: 187 ITGAI------RSKVLELGASGKMLKNSSDALFVQ-DRGRSEKRDKSSER-NKSQSRSKS 238
Query: 225 RKTAECYSCKQIGHWKRDC-----PNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKC 279
R+ C+ C + GH+K+ C N+ G +S S+NV+ G ++ L V
Sbjct: 239 REKKVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVI---GQAADAAALAVREESN 295
Query: 280 TD------AWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDD 333
D W++D+GCS+HMTP R+WF F G V + + IKG+ ++I DD
Sbjct: 296 ADNQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDD 355
Query: 334 GRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNI 393
L VRYVP ++KN+IS+GTL + G F+S+ L+V KG MT+++ K+ G +
Sbjct: 356 NTTVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAG--TLKVVKGCMTLLKGKK-VGTL 412
Query: 394 YKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYC 453
Y L G V G+ +V + D +K+WH RL H+S+R + L K+ L+ + + C+ C
Sbjct: 413 YLLQGVVVTGNANAVTSSKDESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFCEDC 472
Query: 454 VLGKQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYFL 497
V GK RV F + +H T+ L+Y+HSD+WG P+ S+G +YF+
Sbjct: 473 VYGKTHRVGFGSAKHVTREKLEYIHSDLWGAPSVPNSLGNCQYFI 517
Score = 95.5 bits (236), Expect = 2e-19
Identities = 51/117 (43%), Positives = 72/117 (60%), Gaps = 2/117 (1%)
Query: 980 GSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLW 1039
G+ + + ++DD+ + V ELK +L EF+MKDLG A+KILGMEI R+R L
Sbjct: 511 GNCQYFITFIDDL--TRKNKETVKELKERLSSEFEMKDLGPARKILGMEITRNREENILE 568
Query: 1040 LSQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
LSQ+SY++ VL F M + PV TPLA H K ++ + + + M IPYA+AVG
Sbjct: 569 LSQRSYLQKVLKTFRMDECKPVKTPLAPHMKFVAATETEAEEQADQMKSIPYANAVG 625
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 279 bits (714), Expect = 7e-75
Identities = 169/528 (32%), Positives = 275/528 (52%), Gaps = 36/528 (6%)
Query: 2 AKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPT-------DIATVDWNEM--- 51
A+ EV +F G G++ +W ++ + L AL++ + T D + D+ E
Sbjct: 4 ARIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEK 63
Query: 52 -------KEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLY 104
K+KA S I L V+D ++ I +T + L+ LYMSK L N+++ KQ+LY
Sbjct: 64 FEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLY 123
Query: 105 SLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTY--G 162
S KM E ++ ++ F I+ DL + V + DED+AI+LL +LP ++D L TL Y G
Sbjct: 124 SFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSG 183
Query: 163 KDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKS 222
K + LD +++ + SV++ + L+VK + KGK GK K K
Sbjct: 184 KSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKD---KNENKGKGEQKGKGKGKKG 240
Query: 223 KDRKTAECYSCKQIGHWKRDCPNRPG---------KSSNSNSSANVVQSDGSCSEEDLLC 273
K +K C++C + GH++ CPN+ K +S N+ ++ G E L
Sbjct: 241 KSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAAGYYVSE-ALS 299
Query: 274 VSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDD 333
+ V D W+LD+GCSYHMT REWF+ F G V +G+ ++G+ +++ D
Sbjct: 300 STEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSD 359
Query: 334 GRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNI 393
G L+ VRY+P++ +N++SLGT + GY F+SE+ ILR+ G ++ +R +
Sbjct: 360 GLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDG--ILRIKAGNQVLLTGRR-YDTL 416
Query: 394 YKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYC 453
Y L V + +V D T +WH RL H+S++ M L ++ L + ++ +C+ C
Sbjct: 417 YLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDC 476
Query: 454 VLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGGFRYFLHLL 500
+ GK R F H TK L+Y+HSD+WG P S+G +YF+ ++
Sbjct: 477 IYGKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSII 524
Score = 229 bits (585), Expect = 6e-60
Identities = 112/236 (47%), Positives = 154/236 (64%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K G+ F+PVV+H SIR +L++VA D+ LEQ+DVKT FLHG L+E+IYM
Sbjct: 908 KGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAFLHGELKEKIYMSP 967
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEG+ VC L ++LYGLKQ+P+Q ++FD++M I + + YD C Y + L DG
Sbjct: 968 PEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAYTKVLPDG 1027
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S ++LL+YVDD+L+A+ + + LK LG F+MKDLGAAKKILGMEI RDR LWL
Sbjct: 1028 SVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLGVLWL 1087
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+ Y+ +L ++M++ P TPL HFK K + + M +PY+SAVG
Sbjct: 1088 SQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVPYSSAVG 1143
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 268 bits (684), Expect = 2e-71
Identities = 166/477 (34%), Positives = 257/477 (53%), Gaps = 30/477 (6%)
Query: 39 KPTDIATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLF 98
K D V E +KA ++I L V+D ++ I T + W+ L+ L+M ++L ++++
Sbjct: 33 KKRDADEVARLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVY 92
Query: 99 AKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTT 158
+ Y+ KMQE + ++ F I+ADL L++ V DE +AI+LL SLP YD LV T
Sbjct: 93 TQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVET 152
Query: 159 LTYGKDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKK- 217
+ Y KL + ++ + + + + V+G R R GK + G K
Sbjct: 153 MKYSNSREKL-RLDDVMVAARDKERELSQNNRP-----VVEGHFARGRPDGKNNNQGNKG 206
Query: 218 ---KRSKSKDRKTAECYSCKQIGHWKRDC-----PNRPGKSSNSNSSANVVQSDGS---- 265
RSKS D K C+ C + GH+K+ C N+ + + N +++ +S +
Sbjct: 207 KNRSRSKSADGKRV-CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPA 265
Query: 266 ----CSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCII 321
++E L+ S+ + WVLD+GCS+HMTP ++WF FK GYV +G+D +
Sbjct: 266 MVLLATDETLVVTDSI--ANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPV 323
Query: 322 KGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAM 381
KG+ +KI DG L+ VRY+P +T+N+ISLGTL + G FKS++ IL++ KG
Sbjct: 324 KGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDG--ILKIVKGCS 381
Query: 382 TVMRAKRTAGNIYKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKG 441
T+++ ++ +Y L G T G+ S D T +WH RLGH+S++GM L K+ L+
Sbjct: 382 TILKGQK-RDTLYILDGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRR 440
Query: 442 VRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGGFRYFL 497
+ C+ CV GKQ RV F QH TK L YVHSD+WG P S+G +YF+
Sbjct: 441 EVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFI 497
Score = 244 bits (622), Expect = 3e-64
Identities = 129/236 (54%), Positives = 155/236 (65%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K G+ FSPVV+H SIR +L++V +M L+QMDVKT FLHG LEE+IYM Q
Sbjct: 887 KGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQ 946
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF VC LKRSLYGLKQSPRQ RFD +M I Y R YD CVY + +
Sbjct: 947 PEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGD 1006
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
++I+LLLYVDDMLIA+ + VNELK L +EF+MKDLG AKKILGMEI RDR L L
Sbjct: 1007 TYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTL 1066
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+ YV+ VL F M PVSTPL HFKL + + + E M +PYA+ +G
Sbjct: 1067 SQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIG 1122
>At4g10460 putative retrotransposon
Length = 1230
Score = 263 bits (671), Expect = 6e-70
Identities = 167/533 (31%), Positives = 270/533 (50%), Gaps = 56/533 (10%)
Query: 2 AKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRD-----------------EKPTDIA 44
A+ E+ +F G G++ LW ++ + L ALR+ EK A
Sbjct: 4 ARVEMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEA 63
Query: 45 TVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLY 104
++ E ++KA S I L VSD ++ T + + L+ LYMSK L N+++ KQ+LY
Sbjct: 64 LME--EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLY 121
Query: 105 SLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTY--G 162
S KMQE ++ ++ F ++ADL V V DED+AI+LL SLP +D L TL Y G
Sbjct: 122 SYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSG 181
Query: 163 KDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKS 222
+ ++ +D + + + S ++ + L+VK + RG + + G K RS+S
Sbjct: 182 RTTLSVDEVVAAIYSKELELGSNKKSIRGQAEGLYVK-DKPETRGMSEQKEKGNKGRSRS 240
Query: 223 KDRKTAECYSCKQIGHWKRDCPNR-----PGKSSNSNSSANVVQSDGSCSE------EDL 271
+ + C+ C + GH+K CPN+ GK S S G+ SE +
Sbjct: 241 RSKGWKGCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYVSEA 300
Query: 272 LCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIAL 331
L + V + WV+D+GC+YHMT +EWF G V +G+
Sbjct: 301 LHSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTVRMGN---------------- 344
Query: 332 DDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAG 391
+ + +V+Y+P++ +N++S+GTL E+GYSF+S+ +L V +G T++ R
Sbjct: 345 ---KSTSKFRVKYIPDMDRNLLSMGTLEEHGYSFESKNG--VLVVKEGTRTLLIGSRHE- 398
Query: 392 NIYKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCK 451
+Y L G + +VE +D T +WH RLGH+S++ M L K+ L G + + LC+
Sbjct: 399 KLYLLQGKPEVSHSMTVERRNDDTVLWHRRLGHISQKNMDILVKKGYLDGKKVSKLELCE 458
Query: 452 YCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGGFRYFLHLLMIF 503
C+ GK R+ F H T+ L+YVHSD+WG P S+G +YF+ + ++
Sbjct: 459 DCIYGKARRLSFVVATHNTEDKLNYVHSDLWGAPSVPLSLGKCQYFISFIDVY 511
Score = 231 bits (588), Expect = 3e-60
Identities = 117/238 (49%), Positives = 163/238 (68%)
Query: 859 LQKGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYM 918
+ KG + G+ FSPVV+H SIR +LA+VA + LEQ+DVKT FLHG+LEE+I+M
Sbjct: 806 VSKGYAQREGIDYTDIFSPVVKHVSIRILLAIVAEENYELEQLDVKTAFLHGDLEEKIFM 865
Query: 919 EQPEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLD 978
E PEG+ VC L +++YGLKQSPR+ ++FDSYML IG+ R + C Y++SL+
Sbjct: 866 EAPEGYESQFKQGEVCLLNKTMYGLKQSPRRWNQKFDSYMLEIGFERSPRNKCAYIKSLE 925
Query: 979 DGSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKL 1038
DGS ++LL+YVDDML+AA + ++ELK KL ++F+MKDLGAAK+ILGMEI RDR L
Sbjct: 926 DGSKVYLLIYVDDMLVAARDMQVISELKQKLSEKFEMKDLGAAKRILGMEISRDRVKGTL 985
Query: 1039 WLSQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
LSQ+ Y+ VL +++ + V TPL H K+ + S+ E M +PY++AVG
Sbjct: 986 TLSQEDYLSKVLETYNVDQCKFVVTPLGAHLKMHAATEQQLLSDEEYMKSVPYSNAVG 1043
>At1g37110
Length = 1356
Score = 259 bits (662), Expect = 7e-69
Identities = 163/524 (31%), Positives = 260/524 (49%), Gaps = 33/524 (6%)
Query: 3 KFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDWNEMK---------- 52
+ E+ F G +F LW R++ L L+ L D T + +E K
Sbjct: 7 RVEIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSG 66
Query: 53 -------------EKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFA 99
E+A ++I +SD ++ + T D+W L YM +L N+++
Sbjct: 67 TKEVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYT 126
Query: 100 KQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTL 159
+ +LYS KM + +V F I+A+L L ++VD+E +AI++L SLP S+ L TL
Sbjct: 127 QLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTL 186
Query: 160 TYGKDSIKLDSISSTLLQ-HAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKK 218
YG ++ + ++S+ + ++V+ G + + G+ R K K
Sbjct: 187 KYGNKTLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQG--KG 244
Query: 219 RSKSKDRKTAECYSCKQIGHWKRDCPNRPGK-SSNSNSSANVVQSDGSCSEEDLLCVSSV 277
RS+S + C+ CK+ GH K+DC +R K S A V+ SE L V+
Sbjct: 245 RSRSNSKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEA--LSVNEQ 302
Query: 278 KCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVR 337
D W+LDSGC+ HMT R+WF SF+ + LGDD +G ++I G ++
Sbjct: 303 MVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIK 362
Query: 338 TLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLL 397
L V+YVP + +N+IS GTL + GY + E + +R K T +R + G +Y L
Sbjct: 363 ILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGK--VRYFKNNKTALRGSLSNG-LYVLD 419
Query: 398 GGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGK 457
G TVM ++ + ETD T +WH RLGH+S + L + L+ + C++CV+GK
Sbjct: 420 GSTVMSELCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGK 479
Query: 458 QCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYFLHLL 500
+V F G+H ++ L YVH+D+WG P PS+ G +YFL ++
Sbjct: 480 SKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSII 523
Score = 231 bits (589), Expect = 2e-60
Identities = 117/236 (49%), Positives = 158/236 (66%), Gaps = 3/236 (1%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG + G+ F+PVV+H SIR +++LV +D+ LEQMDVKTTFLHG+LEE++YMEQ
Sbjct: 910 KGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQ 969
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF VC+LK+SLYGLKQSPRQ KRFD +M + R ++D CVYV+ + +
Sbjct: 970 PEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEH 1029
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
FI+LLLYVDDMLIA +N +K +L EF+MKD+G A +ILG++I+RDR L L
Sbjct: 1030 DFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKL 1089
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+ Y+ VL RF+MS + P+ HFKL+ + + E +PY+SAVG
Sbjct: 1090 SQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLA---AVREEDECVDTDVVPYSSAVG 1142
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 256 bits (655), Expect = 5e-68
Identities = 168/522 (32%), Positives = 264/522 (50%), Gaps = 46/522 (8%)
Query: 2 AKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDE-----KPTDIATVDWNEMKE--- 53
A+ EV +F G G++ +W ++ L L AL++E K ++ + E +E
Sbjct: 4 ARIEVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLR 63
Query: 54 ---------KAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLY 104
KA S I L V+D ++ I + + L+ LYMSK L N+++ KQ+LY
Sbjct: 64 RELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLY 123
Query: 105 SLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTY--G 162
S KM E ++ ++ F I+ADL V V DED+AI+LL SLP +D L TL Y G
Sbjct: 124 SFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLG 183
Query: 163 KDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVK---GGQGRARGKGKAVDSGKKKR 219
+ ++ LD + + + S ++ + LFVK +GR +G ++ K+
Sbjct: 184 RVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRG---NNNNNKK 240
Query: 220 SKSKDRKTAECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKC 279
S+SK R C+ C +SN S+N +++G E L + +
Sbjct: 241 SRSKSRSKKGCWIC----------------GESSNGSSNYSEANGLYVSE-ALSSTDIHL 283
Query: 280 TDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTL 339
D WV+D+GCSYHMT REWF G V +G+ ++G+ +++ + G V L
Sbjct: 284 EDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRL 343
Query: 340 SQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGG 399
+ VRY+PE+ +N++SLGT ++GYSFK E L + G ++ +R +Y L
Sbjct: 344 TNVRYIPEMDRNLLSLGTFEKSGYSFKLENG--TLSIIAGDSVLLTVRR-CYTLYLLQWR 400
Query: 400 TVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQC 459
V + SV D T +WH RLGH+S++ M L K+ LL + + C+ C+ GK
Sbjct: 401 PVTEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAK 460
Query: 460 RVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGGFRYFLHLL 500
R+ F QH T+ L+YVHSD+WG P S+G +YF+ +
Sbjct: 461 RIGFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFI 502
Score = 238 bits (608), Expect = 1e-62
Identities = 115/236 (48%), Positives = 162/236 (67%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG ++G+ F+PVV+H SIR ++++VA D+ LEQ+DVKT FLHG L+E+IYM
Sbjct: 885 KGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFLHGELKEKIYMVP 944
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEG+ E VC L +SLYGLKQ+P+Q ++F++YM IG+ R YD C Y++ L DG
Sbjct: 945 PEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDG 1004
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S ++LLLYVDDML+AA + ++++LK +L + FDMKDLGAAK+ILGMEI R+R LWL
Sbjct: 1005 SRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWL 1064
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ Y+ +L ++M++ V TPL H K+ K + + + M IPY+SAVG
Sbjct: 1065 SQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYMKSIPYSSAVG 1120
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 256 bits (653), Expect = 8e-68
Identities = 179/548 (32%), Positives = 282/548 (50%), Gaps = 73/548 (13%)
Query: 5 EVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDI--ATVDWN------------- 49
EV +F G G++ LW ++ + L + L +E+ + +T + +
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 50 -------EMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQR 102
E + KA S I L + ++++ ++ T + L+ L+M+K+L N+++ KQR
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126
Query: 103 LYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYG 162
LY KM E ++ +V F +++DL ++V V DED+AI+LL SLP +D L TL Y
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186
Query: 163 KDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKC-------LFVKG-GQGRARGKGKAVDS 214
K ++ L+ I+S + R + E G+SGK LFV+ G+ RGKG +
Sbjct: 187 KTTLHLEEITSAI------RSKILE-LGASGKLLKNNSDGLFVQDRGRSETRGKG---PN 236
Query: 215 GKKKRSKSKDR-KTAECYSCKQIGHWKRDC-----PNRPGKSSN----SNSSANVVQSDG 264
K RSKSK KT C+ C + GH+K+ C N+ G +S S +A V +
Sbjct: 237 KNKSRSKSKGAGKT--CWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAA 294
Query: 265 SCSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGM 324
LL + V D W+LD+GCS+HMT ++W FK G V +G+D +KG+
Sbjct: 295 LVVSRALLGFAEV-TPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGI 353
Query: 325 RQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVM 384
V+I +DG L+ VRY+PE++KN+ISLGTL + G F+S+ + IL + K +TV+
Sbjct: 354 GDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESK--KGILTIFKNDLTVL 411
Query: 385 RAKRTAGNIYKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRS 444
K+ + +Y L G T+ G+ ++ + D T +WH RLGH+ +G+ L +
Sbjct: 412 TGKKES-TLYFLQGTTLAGEANVIDKEKDETSLWHSRLGHIGAKGLQVLVSKG------- 463
Query: 445 CTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGGFRYFLHLLMIF 503
L K + F +H TK LDYVHSD+WG T P S+G +YF+ + F
Sbjct: 464 ---------HLDKNIMISFGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDF 514
Query: 504 LVRSGFIF 511
R+ F
Sbjct: 515 TRRTWIYF 522
Score = 241 bits (615), Expect = 2e-63
Identities = 123/236 (52%), Positives = 156/236 (65%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG + G+ FSPVV+H SIR +L++V DM LEQ+DVKT FLHGNL+E I M Q
Sbjct: 894 KGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQ 953
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEG+ + VC LK+SLYGLKQSPRQ +RFDS+M+ GY+R Y+ CVY + L+DG
Sbjct: 954 PEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDG 1013
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S+I+LLLYVDDMLIA+ + + +LK L +EF+MKDLG A+KILGMEI R+R L L
Sbjct: 1014 SYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILDL 1073
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ YV GVL F M + TPL HFKL + E M +PY +A+G
Sbjct: 1074 SQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPNAIG 1129
>At1g47360 polyprotein, putative
Length = 1182
Score = 254 bits (648), Expect = 3e-67
Identities = 165/508 (32%), Positives = 266/508 (51%), Gaps = 48/508 (9%)
Query: 9 FYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDWNEMKEKAASLIRLCVSDDLM 68
F +G+F LW R+ L+ L+ + + T + + + ++K I LC
Sbjct: 9 FDESGDFSLWKTRIMAHLSVIGLKDVVIGKTITPLTAEEEEDPEKK----IELC------ 58
Query: 69 NHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADL 128
T ++ W+ L+ L+M ++L ++++ + Y+ KMQE + ++ F I+ADL
Sbjct: 59 ------QTAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADL 112
Query: 129 TRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYG--KDSIKLDSIS----STLLQHAQRR 182
L+++V DE +AI+LL SLP YD LV T+ Y ++ ++LD + + +Q
Sbjct: 113 NHLQIEVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVGARDKERELSQNN 172
Query: 183 QSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRD 242
+ V EG + G+ QG KGK + RSKS D K C+ C + GH+K+
Sbjct: 173 RPVAEGHYARGRPEGKNNNQGN---KGK-----NRSRSKSADGKRV-CWICGKEGHFKKQ 223
Query: 243 CPNRPGKSSNSNSSANVVQSDGSCSEE------------DLLCVSSVKCTDAWVLDSGCS 290
C ++ + ++V +S + S E + L V+ + D W LD+GCS
Sbjct: 224 CYKWLERNKSKQQGSDVGESSLAKSSEIFDPAMVIMATGETLLVTG-RDADEWFLDTGCS 282
Query: 291 YHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTK 350
+HMTP R+ F FK G+V +G+D +KG+ +KI +DG L+ VRYVP + +
Sbjct: 283 FHMTPRRDLFKDFKELSSGFVKMGNDTYSPVKGIGSIKIRNNDGTQVILTDVRYVPNMAR 342
Query: 351 NMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVET 410
N+ISLGTL + G FKS++ +L++ KG T+++ ++ +Y L G G+ S
Sbjct: 343 NLISLGTLEDKGCWFKSQDG--VLKIVKGCSTILKGQKRE-TLYILEGLAENGESHSSAE 399
Query: 411 DDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKT 470
D T +WH RLGH+S++GM L K++ L+ + C+ CV GK RV F QH T
Sbjct: 400 LKDETSLWHSRLGHMSQKGMEILVKKDCLQRETIKELKFCEDCVYGKNHRVSFAPAQHVT 459
Query: 471 KGILDYVHSDVWGPTKEP-SVGGFRYFL 497
K L Y+HSD+WG P S+G +YF+
Sbjct: 460 KEKLAYIHSDLWGSPHNPASLGNCQYFI 487
Score = 81.3 bits (199), Expect = 3e-15
Identities = 38/66 (57%), Positives = 47/66 (70%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K G+ FSPVV+H SIR ++++VA DM L+QMDVKT FLHG L+E IYM Q
Sbjct: 844 KGFTQKEGIDYTEIFSPVVKHVSIRYIVSMVAHFDMELQQMDVKTAFLHGFLDEDIYMAQ 903
Query: 921 PEGFSE 926
PEGF +
Sbjct: 904 PEGFED 909
Score = 43.5 bits (101), Expect = 8e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 1042 QKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
+++YV+ VL M + PVSTP+ HFKL + ++ E M +PYA+ VG
Sbjct: 915 KEAYVKKVLRSTHMDQSKPVSTPIGVHFKLRAATEEEYKNQFERMRFVPYANTVG 969
>At4g21360 putative transposable element
Length = 1308
Score = 243 bits (620), Expect = 5e-64
Identities = 159/508 (31%), Positives = 246/508 (48%), Gaps = 34/508 (6%)
Query: 3 KFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDWNEMKEKAAS----- 57
K E+ F G +F LW R++ L L+ AL D T V +E KE +
Sbjct: 6 KVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESEDDETD 65
Query: 58 ---------LIRLCVSDD----LMNHILDLT--------TPKDVWDKLESLYMSKTLMNK 96
I+ SD ++NHI D T ++W L L+M +L N+
Sbjct: 66 SKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETSLPNR 125
Query: 97 LFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLV 156
++ + RLYS KM + + + F I+A+L L+++V +E +AI++L SLP SY L
Sbjct: 126 IYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYIQLK 185
Query: 157 TTLTYGKDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGK 216
TL YG ++ + + S+ + +E + +GR + K
Sbjct: 186 HTLKYGNKTLSVQDVVSSAKSLERELSEQKETIRAPASTALYTAERGRPQTKNTQGQGKG 245
Query: 217 KKRSKSKDRKTAECYSCKQIGHWKRDCPNRPGKSSNSNSS-ANVVQSDGSCSEEDLLCVS 275
+ RS SK R T C+ CK+ GH K+DC K N A V+ SE L +
Sbjct: 246 RGRSNSKSRLT--CWFCKKEGHVKKDCYAGKRKLENEGQGKAGVITEKLVYSEA--LSMY 301
Query: 276 SVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGR 335
+ D WV+DSGC+YHMT +WF+ F + + LGDD KG VK+ G
Sbjct: 302 DQEAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKGSGTVKVNTHGGS 361
Query: 336 VRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYK 395
+R L VR+VP + +N+IS GTL + GY + + + +R K T + G +Y
Sbjct: 362 IRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGK--VRFYKENKTALCGNLVNG-LYV 418
Query: 396 LLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVL 455
L G TV+ + +VE ++ T++WH RLGH+S M L ++ LL+ + C+ CV+
Sbjct: 419 LDGHTVVNENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDIKELSFCENCVM 478
Query: 456 GKQCRVRFKTGQHKTKGILDYVHSDVWG 483
GK ++ F G+H T +L Y+H+D+WG
Sbjct: 479 GKSKKLSFNVGKHITDEVLGYIHADLWG 506
Score = 224 bits (572), Expect = 2e-58
Identities = 114/238 (47%), Positives = 162/238 (67%), Gaps = 7/238 (2%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
+G ++G+ F+PVV+H SIR +++ V DM LEQMDVKTTFLHG L++ +YMEQ
Sbjct: 891 RGFTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDMELEQMDVKTTFLHGELDQVLYMEQ 950
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF + VC LK+SLYGLKQ+PRQ K+F ++ML + + R ++D CVYV+ ++ G
Sbjct: 951 PEGFEVNPEKDQVCLLKKSLYGLKQAPRQWNKKFHAFMLSLQFARSEHDSCVYVKEVNPG 1010
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
F++LLLYVDDML+AA +++LK L +F+MKD+GAA +ILG++I R+R L L
Sbjct: 1011 EFVYLLLYVDDMLLAAKSKSEISKLKEALSLKFEMKDMGAASRILGIDIIRNRKEGTLRL 1070
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLS--LGQCSKTDSEIEGMSKIPYASAVG 1096
SQ YV+ V+ RF M+ VSTP+ HFKL+ + + D E+ +PY+SAVG
Sbjct: 1071 SQTRYVDKVIQRFRMADAKVVSTPMGAHFKLTSLIDEIGSVDPEV-----VPYSSAVG 1123
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 234 bits (598), Expect = 2e-61
Identities = 123/236 (52%), Positives = 152/236 (64%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K G+ FSPVV+H SIR +L++V DM L+QMDVKT FLHG L+E IY+EQ
Sbjct: 705 KGYSQKEGIDYQEIFSPVVKHVSIRLLLSMVTHCDMELQQMDVKTAFLHGYLDETIYIEQ 764
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEG+ VC LKRSLYGL+QSPRQ RF+ +M +IGY R YD CVY + L G
Sbjct: 765 PEGYVHKRYPDKVCLLKRSLYGLRQSPRQWNNRFNEFMQKIGYERSKYDSCVYFKELQSG 824
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+I+LLLYVDD+LIA+ V +LK L EF+MKDLG AKKILGMEI RDR + +
Sbjct: 825 EYIYLLLYVDDILIASRDKRTVCDLKALLNSEFEMKDLGDAKKILGMEIVRDRKAGTMSI 884
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+ Y+ VL F M + PV TP+ HFKL + + E M +PY SAVG
Sbjct: 885 SQEGYLLKVLGNFGMDQAKPVFTPMGAHFKLKPATDEEVMRQSEVMRAVPYQSAVG 940
Score = 149 bits (375), Expect = 1e-35
Identities = 97/330 (29%), Positives = 168/330 (50%), Gaps = 32/330 (9%)
Query: 22 VKDLLAQQSLQKALRDEKPTDIATVDWN--------EMKEKAASLIRLCVSDDLMNHILD 73
+KD L +++ L++E +D A + EKA +I + V D ++ +I +
Sbjct: 3 LKDALVERAPLPPLKEEDESDPAKKKQRIEEEKARIDQDEKAMDMIFINVGDKVLRNIEN 62
Query: 74 LTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRV 133
T + W L+ LY+ K+L N+++ + ++Y+ +MQ+ L+ +V F +++DL L++
Sbjct: 63 SKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYRMQDSKTLEENVDEFQKMISDLNNLQI 122
Query: 134 KVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSVEEGGGSSG 193
+V DE +AI++L +LP SYD L TL YG++ IKLD + S + G G
Sbjct: 123 QVPDEVQAILILSALPDSYDMLKETLKYGREGIKLDDVISAAKSKELELRDSSGGSRPVG 182
Query: 194 KCLFVKGGQGRARGK-GKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRPGKSSN 252
+ L+V+ G+ +ARG G GKK C+ C + GH+KR C K+
Sbjct: 183 EGLYVR-GKSQARGSDGPKSTEGKK-----------VCWICGKEGHFKRQCYKWLEKNKA 230
Query: 253 SNSSANVVQSDGSCSEEDL--LCVSSVKCTDA------WVLDSGCSYHMTPHREWFNSFK 304
+ + + D + +DL L S V ++ W++D+GCS+HMTP +E+ F
Sbjct: 231 NGAGETALVKDDA---QDLVGLVASEVNMSEGKDDQEEWIMDTGCSFHMTPRKEYLMDFV 287
Query: 305 LGDFGYVYLGDDKPCIIKGMRQVKIALDDG 334
G V + ++ +KG+ +VK DG
Sbjct: 288 EAKSGKVRMANNSFSEVKGIGKVKFIKKDG 317
>At4g04600 putative polyprotein
Length = 922
Score = 196 bits (498), Expect = 7e-50
Identities = 101/202 (50%), Positives = 135/202 (66%), Gaps = 3/202 (1%)
Query: 895 DMHLEQMDVKTTFLHGNLEEQIYMEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRF 954
DM LEQMDVKT FLHG L++ +YMEQPEGF + VC LK+SLYGLKQ+PRQ K+F
Sbjct: 591 DMELEQMDVKTAFLHGELDQVLYMEQPEGFEADPNKDQVCLLKKSLYGLKQAPRQWNKKF 650
Query: 955 DSYMLRIGYRRCDYDCCVYVRSLDDGSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFD 1014
+++M+ G+ R +D CVYV+ + F++LL+YVDDMLIA + VN++K L F+
Sbjct: 651 NAFMMDQGFTRSLHDSCVYVKEVSPDQFVYLLVYVDDMLIAGKSMAEVNKVKEGLSLNFE 710
Query: 1015 MKDLGAAKKILGMEIHRDRGTKKLWLSQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLG 1074
MKD+GAA +ILG++I R+R L LSQ Y+E V+ RF M+ VSTP+ HFKLS
Sbjct: 711 MKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLS-- 768
Query: 1075 QCSKTDSEIEGMSKIPYASAVG 1096
+ + E PY+SAVG
Sbjct: 769 -AVRNNDESVDTEVCPYSSAVG 789
Score = 115 bits (287), Expect = 2e-25
Identities = 75/267 (28%), Positives = 119/267 (44%), Gaps = 52/267 (19%)
Query: 226 KTAECYSCKQIGHWKRDCPNRPGKSSNSNSS-ANVVQSDGSCSEEDLLCVSSVKCTDAWV 284
KT + CK+ GH K+DC R K N A V+ SE L + + + + V
Sbjct: 143 KTIDQNFCKKEGHVKKDCFARKKKFENEEQGEAGVITEKLVYSEA--LSMYNQEAKEKRV 200
Query: 285 LDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRY 344
+DSGC+YHMT +WF+ F + + LGDD +G VKI G +R L V +
Sbjct: 201 IDSGCTYHMTSRMDWFSDFNENESTLILLGDDHTVESRGTGTVKINTHGGAIRMLKNVTF 260
Query: 345 VPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGD 404
VP + +N+IS TL + G+ + + +
Sbjct: 261 VPNLRRNLISTDTLDKLGFKHEGGDGK--------------------------------- 287
Query: 405 VASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFK 464
+RLGH+S M L ++ L++ + C++CV+GK ++ F
Sbjct: 288 ---------------IRLGHMSVNNMKILTEKGLIEKKDIKELDFCEHCVMGKSKKLSFN 332
Query: 465 TGQHKTKGILDYVHSDVWG-PTKEPSV 490
G+H T+ +L Y+H+D+WG P PS+
Sbjct: 333 VGKHITEDLLGYLHADLWGSPNVTPSL 359
Score = 43.9 bits (102), Expect = 6e-04
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 28/134 (20%)
Query: 3 KFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRD--------------------EKPTD 42
+ E+ F G +F LW R+ L L+ L D ++ +D
Sbjct: 6 RVEIKAFDGDNDFSLWKMRIMAQLGVLGLKGTLTDFALTKTEPLTKSEEKQVASGDESSD 65
Query: 43 IATVDWNEM--------KEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLM 94
+ V E+ E+A ++I +SD ++ + T +W+ L LYM +L
Sbjct: 66 SSAVLTKEVPDPIKIEKSEQAINIIINHISDTVLRKVNHYKTAATLWELLNELYMETSLP 125
Query: 95 NKLFAKQRLYSLKM 108
N+++A+ + YS +M
Sbjct: 126 NRIYAQLKFYSFRM 139
>At4g03810 putative retrotransposon protein
Length = 964
Score = 188 bits (477), Expect = 2e-47
Identities = 115/267 (43%), Positives = 157/267 (58%), Gaps = 8/267 (2%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG G+ +SPV SIR +LA A D + QMDVKT FL+GNLEE +YM Q
Sbjct: 512 KGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQ 571
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF+ R VCKL RS+YGLKQ+ R RF+ + + R + + CVY ++ G
Sbjct: 572 PEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKT--SG 629
Query: 981 SFI-FLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLW 1039
S + FL+LYVDD+L+ N + + +KT LG F MKD+G A ILG+ I+RDR K +
Sbjct: 630 SAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIG 689
Query: 1040 LSQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVGC*C 1099
LSQ +Y++ VL RF+M P+++ LS QC T E E MSKIPYASA+G
Sbjct: 690 LSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIG--- 746
Query: 1100 MLWFALDRIWHKQLVKCASSCPSQGSS 1126
+ +A+ ++ + V CA S S+ S
Sbjct: 747 SIMYAM--LYTRPDVACALSMTSRYQS 771
Score = 72.0 bits (175), Expect = 2e-12
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 336 VRTLSQVRYVPEVTKNMISLGTLHENGYSFK------SEENRDILRVSKGAMTVMRAKRT 389
V L YVP + KN+IS+ L G+ F S + D+ S +
Sbjct: 2 VLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQ 61
Query: 390 AGNIYKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGL 449
+ IY + + D + T +WH RLGH++E+ + +LH LL +
Sbjct: 62 SMPIYNIRTKKFKSN------DLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYET 115
Query: 450 CKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFLHLLMIFLVRSGF 509
C+ C+LGK + F + +L +H+DV GP + G ++YF+ F R G+
Sbjct: 116 CESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDF-SRYGY 174
Query: 510 IF 511
++
Sbjct: 175 VY 176
>At4g04440 putative transposon protein
Length = 570
Score = 177 bits (449), Expect = 4e-44
Identities = 83/187 (44%), Positives = 130/187 (69%)
Query: 847 RKKKGKSSRLA*LQKGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTT 906
R K K + + +G ++G+ F+PVV+HTSIR ++++VA D+ LEQMDVKT
Sbjct: 207 RPKDQKRYKARLVARGFTQRKGIDYDEVFAPVVKHTSIRVLMSIVAQDDLELEQMDVKTA 266
Query: 907 FLHGNLEEQIYMEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRC 966
FLHG+L++ +YMEQPEG+ VC LK+SLYGLKQ+PRQ K+F+S+++ + R
Sbjct: 267 FLHGDLDKPLYMEQPEGYVVDESKDQVCLLKKSLYGLKQAPRQWNKKFNSFIMDQNFTRS 326
Query: 967 DYDCCVYVRSLDDGSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILG 1026
D+D CVY++ ++ +++LLLYVD ML+ A + +N++K L + F+MKD+G A +ILG
Sbjct: 327 DHDSCVYIKEVNPDEYVYLLLYVDGMLLVAKSMVEINKIKEALSQGFEMKDMGPASRILG 386
Query: 1027 MEIHRDR 1033
++I ++R
Sbjct: 387 VDIIKNR 393
>At3g60170 putative protein
Length = 1339
Score = 172 bits (436), Expect = 1e-42
Identities = 134/536 (25%), Positives = 247/536 (46%), Gaps = 57/536 (10%)
Query: 13 GNFGLWHRRVKDLLAQQSLQKALRDEKPTDI-----------ATVDWNEMKE-KAASLIR 60
G + W +++ L + L + + + P + + V+ ++K+ K + +
Sbjct: 17 GYYDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDLKVKNFLF 76
Query: 61 LCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKL---FAKQRLYSLKMQEGGDLQAH 117
+ +++ ILD +T K +W+ ++ Y T + + ++ L M+EG +
Sbjct: 77 QAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEGEKIDTF 136
Query: 118 VYAFNNILADLTRLRVKVDDEDKAII---LLRSLPGSYDHLVTTLTYGKD--SIKLDSIS 172
+ L + +++ + +++ I +LRSL ++++V ++ D ++ +D +
Sbjct: 137 L---GRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELH 193
Query: 173 STLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSK-----DRKT 227
+LL H QR G + L V + ++G+G+ V G + R + + +R
Sbjct: 194 GSLLVHEQRLN----GHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGRGRGRSGTNRAI 249
Query: 228 AECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDA----- 282
ECY C +GH++ +CP +AN + + EE+LL ++ V+ A
Sbjct: 250 VECYKCHNLGHFQYECPEW-------EKNANYAELE---EEEELLLMAYVEQNQANRDEV 299
Query: 283 WVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQV 342
W LDSGCS HMT +EWF+ + G V LG+D + G VK+ + +G + + +V
Sbjct: 300 WFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKV-NGVTQVIPEV 358
Query: 343 RYVPEVTKNMISLGTLHENGYSFKSEENR-DILRVSKGAMTVMRAKRTAGNIYKLLGGTV 401
YVPE+ N++SLG L E G + + + SKGA +M + ++ LL
Sbjct: 359 YYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGA--IMETNMSGNRMFFLLASKP 416
Query: 402 MGDVASVETD---DDATKMWHMRLGHLSERGMMQLHKRNLLKG--VRSCTIGLCKYCVLG 456
+ ++T+ D +WH R GHL++ G+ L + ++ G + T +C C+ G
Sbjct: 417 QKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKEICAICLTG 476
Query: 457 KQCRVRF-KTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFLHLLMIFLVRSGFIF 511
KQ R K K+ L VHSD+ GP S G RY L + F ++ F
Sbjct: 477 KQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYF 532
Score = 145 bits (366), Expect = 1e-34
Identities = 75/212 (35%), Positives = 124/212 (58%), Gaps = 3/212 (1%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG G+ F+PV R ++R +LA+ + + + Q+DVK+ FLHG L+E++Y+ Q
Sbjct: 894 KGYAQCYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQ 953
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF G+ V KL+++LYGLKQ+PR Y R ++Y L+ + RC + ++ ++ G
Sbjct: 954 PEGFIREGEEEKVYKLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKT-RVG 1012
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+ + + LYVDD++ + +E K + EF+M DLG K LG+E+ + G +++
Sbjct: 1013 NILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDG--GIFI 1070
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLS 1072
Q+ Y VL+RF M + N V P+ KL+
Sbjct: 1071 CQRRYAREVLARFGMDESNAVKNPIVPGTKLT 1102
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 169 bits (428), Expect = 1e-41
Identities = 125/472 (26%), Positives = 216/472 (45%), Gaps = 40/472 (8%)
Query: 54 KAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYS---LKMQE 110
K + + + ++ IL T KD+W+ ++ Y + ++ S L+M+
Sbjct: 27 KVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKI 86
Query: 111 GGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKD--SIKL 168
G + + I D+ L + D +LR+L + ++V + + + +
Sbjct: 87 GETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTV 146
Query: 169 DSISSTLLQHAQR--RQSVEEGGGSSGKCLFVKGGQGR----ARGKGKAVDSGKKKRSKS 222
D + S+L+ H Q R VEE + GG+GR +RG+G+ G+ + +
Sbjct: 147 DGLQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRGRGYVN 206
Query: 223 KDRKTAECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKCT-- 280
+D T EC+ C ++GH+K +CP+ AN V+ EEDLL ++ V+
Sbjct: 207 RD--TVECFKCHKMGHYKAECPSW-------EKEANYVEM-----EEDLLLMAHVEQIGD 252
Query: 281 ---DAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVR 337
W LDSGCS HM REWF G V LGDD+ ++G ++++ + DGR++
Sbjct: 253 EEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEV-DGRIQ 311
Query: 338 TLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLL 397
+S V +VP + N+ S+G L + G F E + + VM + T ++ +
Sbjct: 312 VISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVF 371
Query: 398 GGTVMG----DVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIG----L 449
+ ++ A MWH R GHL+ +G+ L ++ ++KG+ +G +
Sbjct: 372 AAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAV 431
Query: 450 CKYCVLGKQCRVRF-KTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFLHLL 500
C C+ GKQ R K K+ +L VH+D+ GP S G RY L+ +
Sbjct: 432 CDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFI 483
Score = 140 bits (353), Expect = 5e-33
Identities = 69/212 (32%), Positives = 124/212 (57%), Gaps = 3/212 (1%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG H + G+ F+PV + +IR +L L A + + Q+DVK+ FLHG+L+E +++EQ
Sbjct: 854 KGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQ 913
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
P+GF + V KLK++LYGLKQ+PR Y R + + + G+ +C + ++V+ +
Sbjct: 914 PKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKK-ERS 972
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
F+ + +YVDD++ + + + K + +EF M DLG K LG+E+ +D + +++
Sbjct: 973 DFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDE--RGIFI 1030
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLS 1072
+Q+ Y ++ ++ M N V P+ KL+
Sbjct: 1031 NQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLT 1062
>At1g48710 hypothetical protein
Length = 1352
Score = 163 bits (412), Expect = 7e-40
Identities = 131/519 (25%), Positives = 239/519 (45%), Gaps = 71/519 (13%)
Query: 29 QSLQKALRDEKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLY 88
Q+ + LRD + D +KA LI + +D +++ T+ K+ W+KL + Y
Sbjct: 53 QTQKDGLRDSRKRD----------KKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSY 102
Query: 89 MSKTLMNKL---FAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILL 145
+ K+ + +L+M+EG + + + +L R K+DD +L
Sbjct: 103 KGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVL 162
Query: 146 RSLPGSYDHLVTTLTYGKD--SIKLDSISSTLLQHAQRRQSVEE---------------- 187
RSL ++H+VT + KD ++ ++ + +L + ++++ E+
Sbjct: 163 RSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENG 222
Query: 188 -------GGGSSGKCLFVKGGQGRARG----------KGKAVDSGKKK-RSKSK-DRKTA 228
GG G+ +GG G RG +G+ G+ K KS+ D+ +
Sbjct: 223 QSYQRRGGGQVRGRG---RGGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSV 279
Query: 229 ECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDA-----W 283
+CY+C + GH+ +C + + AN V+ EED+L ++S K + W
Sbjct: 280 KCYNCGKFGHYASEC--KAPSNKKFEEKANYVEE--KIQEEDMLLMASYKKDEQEENHKW 335
Query: 284 VLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVR 343
LDSG S HM + F G V LGD+ +KG + I L +G + +S V
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 344 YVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMG 403
Y+P + N++SLG L E GY + ++N +R + + + + + ++ L +
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL-ITKVPMSKNRMFVL---NIRN 451
Query: 404 DVASV--ETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCT--IGLCKYCVLGKQC 459
D+A + + +WH+R GHL+ G+ L ++ +++G+ +C+ C+LGKQ
Sbjct: 452 DIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQF 511
Query: 460 RVRF-KTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFL 497
++ F K + + L+ +H+DV GP K S+G YFL
Sbjct: 512 KMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFL 550
Score = 151 bits (382), Expect = 2e-36
Identities = 81/236 (34%), Positives = 132/236 (55%), Gaps = 9/236 (3%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG + G+ F+PV R ++R +++L A + QMDVK+ FL+G+LEE++Y+EQ
Sbjct: 905 KGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQ 964
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
P+G+ G+ V +LK++LYGLKQ+PR R D Y + +C Y+ +Y++ +
Sbjct: 965 PQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK-IQKE 1023
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+ LYVDD++ N+ E K ++ KEF+M D+G LG+E+ ++ +++
Sbjct: 1024 DILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQE--DNGIFI 1081
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
+Q+ Y + VL +F M NPV TP+ KLS E EG+ + S VG
Sbjct: 1082 TQEGYAKEVLKKFKMDDSNPVCTPMECGIKLS------KKEEGEGVDPTTFKSLVG 1131
>At1g58140 hypothetical protein
Length = 1320
Score = 162 bits (411), Expect = 9e-40
Identities = 131/519 (25%), Positives = 239/519 (45%), Gaps = 71/519 (13%)
Query: 29 QSLQKALRDEKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLY 88
Q+ + LRD + D +KA LI + +D +++ T+ K+ W+KL + Y
Sbjct: 53 QTQKDGLRDSRKRD----------KKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSY 102
Query: 89 MSKTLMNKL---FAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILL 145
+ K+ + +L+M+EG + + + +L R K+DD +L
Sbjct: 103 KGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVL 162
Query: 146 RSLPGSYDHLVTTLTYGKD--SIKLDSISSTLLQHAQRRQSVEE---------------- 187
RSL ++H+VT + KD ++ ++ + +L + ++++ E+
Sbjct: 163 RSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENG 222
Query: 188 -------GGGSSGKCLFVKGGQGRARG----------KGKAVDSGKKK-RSKSK-DRKTA 228
GG G+ +GG G RG +G+ G+ K KS+ D+ +
Sbjct: 223 QSYQRRGGGQVRGRG---RGGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSV 279
Query: 229 ECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDA-----W 283
+CY+C + GH+ +C + + AN V+ EED+L ++S K + W
Sbjct: 280 KCYNCGKFGHYASEC--KAPSNKKFEEKANYVEE--KIQEEDMLLMASYKKDEQEENHKW 335
Query: 284 VLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVR 343
LDSG S HM + F G V LGD+ +KG + I L +G + +S V
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 344 YVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMG 403
Y+P + N++SLG L E GY + ++N +R + + + + + ++ L +
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL-ITKVPMSKNRMFVL---NIRN 451
Query: 404 DVASV--ETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCT--IGLCKYCVLGKQC 459
D+A + + +WH+R GHL+ G+ L ++ +++G+ +C+ C+LGKQ
Sbjct: 452 DIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQF 511
Query: 460 RVRF-KTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFL 497
++ F K + + L+ +H+DV GP K S+G YFL
Sbjct: 512 KMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFL 550
Score = 152 bits (384), Expect = 1e-36
Identities = 81/236 (34%), Positives = 132/236 (55%), Gaps = 9/236 (3%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG + G+ F+PV R ++R +++L A + QMDVK+ FL+G+LEE++Y+EQ
Sbjct: 873 KGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQ 932
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
P+G+ G+ V +LK++LYGLKQ+PR R D Y + +C Y+ +Y++ +
Sbjct: 933 PQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK-IQKE 991
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+ LYVDD++ N+ E K ++ KEF+M D+G LG+E+ ++ +++
Sbjct: 992 DILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQE--DNGIFI 1049
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
+Q+ Y + VL +F M NPV TP+ KLS E EG+ + S VG
Sbjct: 1050 TQEGYAKEVLKKFKMDDSNPVCTPMECGIKLS------KKEEGEGVDPTTFKSLVG 1099
>At4g04280 putative transposon protein
Length = 1104
Score = 162 bits (409), Expect = 2e-39
Identities = 93/236 (39%), Positives = 131/236 (55%), Gaps = 39/236 (16%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
+G + G+ FSPVV+HTSIR +L+L+ DM LEQMDVKT FLHG L++ ++MEQ
Sbjct: 746 RGFSHREGIDYQEVFSPVVKHTSIRILLSLMVKEDMELEQMDVKTAFLHGELDQTLFMEQ 805
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF ++PRQ KRF+++M+ + R D CVYV+ + +
Sbjct: 806 PEGF--------------------EAPRQWNKRFNAFMMDQKFSRSVSDSCVYVKEVSN- 844
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
A + + +LK L +EF+MKD+GAA + LG++I R+R L L
Sbjct: 845 ---------------AKSMTEIKKLKKVLSREFEMKDMGAASRKLGIDIIRNRSEGTLCL 889
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ SY+E V+ +F M V+TP+ HFKLS D E G K+PY+S VG
Sbjct: 890 SQTSYLERVIQKFRMDGAKVVNTPIGAHFKLS---SVHNDDERVGSEKVPYSSVVG 942
Score = 150 bits (378), Expect = 6e-36
Identities = 135/525 (25%), Positives = 206/525 (38%), Gaps = 125/525 (23%)
Query: 3 KFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDWNEMKEKA----ASL 58
K E+ F G +F W R++ L L+ +L D K T V E KE AS
Sbjct: 2 KVEIKTFNGDRDFSFWKIRIEAQLGVLGLKNSLTDFKLTKTVPVAKKEEKESEYEDDASD 61
Query: 59 IRLCVSDD--------------LMNHILDLT--------TPKDVWDKLESLYMSKTLMNK 96
I+ + ++NHI D T ++W L L+M +L+N+
Sbjct: 62 IKQATEEPDPIKFEQSEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNR 121
Query: 97 LFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLV 156
++ + +LYS KM + + +V F ILAD + LP SY L
Sbjct: 122 IYTQLKLYSFKMVDTLSIDQNVDEFLRILADCLDQNL--------------LPSSYIQL- 166
Query: 157 TTLTYGKDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGK 216
K ++ D +SS + ++ E S G+ + R + K
Sbjct: 167 ------KHTLNTDVVSSAKSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDKQGQGKN 220
Query: 217 KKRSKSKDRKTAECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSS 276
+ RS SK R T C+ CK+ H KRDC R K N N +
Sbjct: 221 RGRSNSKTRVT--CWFCKKEAHVKRDCFARKKKLENENRAT------------------- 259
Query: 277 VKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRV 336
+ LGDD +G +K+ G +
Sbjct: 260 ---------------------------------MILLGDDHTVESRGCGTIKLNTHGGLI 286
Query: 337 RTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKL 396
R L VRYVP + +N+IS GTLH GY + E + LR K T + G +Y L
Sbjct: 287 RMLKNVRYVPNLRRNLISTGTLHSLGYKHEGGEGK--LRFYKNGKTALCGYLMNG-LYIL 343
Query: 397 LGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLG 456
G TV + + E+ ++TK+ L++ + C++ V+G
Sbjct: 344 DGHTVATETCNAESAKNSTKL--------------------LIEKKEFKDLDFCEHYVMG 383
Query: 457 KQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYFLHLL 500
K ++ F G+H T+ IL YVH+D+WG P PS+ G +YFL ++
Sbjct: 384 KSKKLSFNVGKHVTEDILGYVHADLWGSPNVTPSISGKQYFLSII 428
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 162 bits (409), Expect = 2e-39
Identities = 131/519 (25%), Positives = 238/519 (45%), Gaps = 71/519 (13%)
Query: 29 QSLQKALRDEKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLY 88
Q+ + LRD + D +KA LI + +D +++ T+ K+ W+KL + Y
Sbjct: 53 QTQKDGLRDSRKRD----------KKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSY 102
Query: 89 MSKTLMNKL---FAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILL 145
+ K+ + +L+M+EG + + + +L R K+DD +L
Sbjct: 103 KGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVL 162
Query: 146 RSLPGSYDHLVTTLTYGKD--SIKLDSISSTLLQHAQRRQSVEE---------------- 187
RSL ++H+VT + KD ++ ++ + +L + ++++ E+
Sbjct: 163 RSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENG 222
Query: 188 -------GGGSSGKCLFVKGGQGRARG----------KGKAVDSGKKK-RSKSK-DRKTA 228
GG G+ +GG G RG +G+ G+ K KS+ D+ +
Sbjct: 223 QSYQRRGGGQVRGRG---RGGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSV 279
Query: 229 ECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDA-----W 283
+CY+C + GH+ +C + + AN V+ EED+L ++S K + W
Sbjct: 280 KCYNCGKFGHYASEC--KAPSNKKFKEKANYVEE--KIQEEDMLLMASYKKDEQEENHKW 335
Query: 284 VLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVR 343
LDSG S HM + F G V LGD+ +KG + I L +G + +S V
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 344 YVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMG 403
Y+P + N++SLG L E GY + ++N +R K + + + + ++ L +
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR-DKESNLITKVPMSKNRMFVL---NIRN 451
Query: 404 DVASV--ETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCT--IGLCKYCVLGKQC 459
D+A + + +WH+R GHL+ G+ L ++ +++G+ +C+ C+LG Q
Sbjct: 452 DIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQF 511
Query: 460 RVRF-KTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFL 497
++ F K + + L+ +H+DV GP K S+G YFL
Sbjct: 512 KMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFL 550
Score = 140 bits (352), Expect = 6e-33
Identities = 69/200 (34%), Positives = 116/200 (57%), Gaps = 3/200 (1%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG + G+ F+PV R ++R +++L A + QMDVK+ FL+G+LEE++Y+EQ
Sbjct: 905 KGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQ 964
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
P+G+ G+ V +LK+ LYGLKQ+PR R D Y + +C Y+ +Y++ +
Sbjct: 965 PQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK-IQKE 1023
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+ LYVDD++ N+ E K ++ KEF+M D+G LG+E+ ++ +++
Sbjct: 1024 DILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQE--DNGIFI 1081
Query: 1041 SQKSYVEGVLSRFDMSKENP 1060
+Q+ Y + VL +F M NP
Sbjct: 1082 TQEGYAKEVLKKFKMDDSNP 1101
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.337 0.146 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,282,423
Number of Sequences: 26719
Number of extensions: 1120619
Number of successful extensions: 4878
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4178
Number of HSP's gapped (non-prelim): 356
length of query: 1309
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1198
effective length of database: 8,352,787
effective search space: 10006638826
effective search space used: 10006638826
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0065.12