BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.17
(128 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41770 cell cycle control crn (crooked neck) protein-like 197 9e-52
At3g13210 crn-like protein 184 1e-47
At5g45990 CRN (crooked neck) protein 178 8e-46
At3g51110 crooked neck-like protein 137 1e-33
At3g11963 pre-rRNA processing protein like 40 3e-04
At5g28740 putative protein 38 0.002
At4g03430 putative pre-mRNA splicing factor 35 0.008
At3g17040 unknown protein 35 0.010
At1g17760 unknown protein 32 0.068
At5g28220 putative protein 30 0.34
At3g10100 hypothetical protein 27 2.2
At2g09910 pseudogene 27 2.8
At1g79460 putative protein 27 2.8
At4g28200 unknown protein 27 3.7
At3g60000 putative protein 26 4.9
At3g14730 hypothetical protein 26 4.9
At1g04080 unknown protein 26 6.3
At4g31530 unknown protein 25 8.3
At4g26780 grpE like protein 25 8.3
At4g20730 putative protein 25 8.3
>At5g41770 cell cycle control crn (crooked neck) protein-like
Length = 705
Score = 197 bits (502), Expect = 9e-52
Identities = 97/115 (84%), Positives = 104/115 (90%)
Query: 12 KFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKL 71
KFSFA +WLLAAQFEIRQLNL GA ILG+AIGKAPKDKI KKYIEIELQLGN+DRCRKL
Sbjct: 419 KFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKL 478
Query: 72 YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNI 126
YE+YLEW+ ENCYAWSKYA LERSL ET+RAR+IFELAISQPA DMPELLWK I
Sbjct: 479 YERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMPELLWKAYI 533
Score = 54.3 bits (129), Expect = 2e-08
Identities = 28/91 (30%), Positives = 53/91 (57%), Gaps = 2/91 (2%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPK-DKILKKYIEIELQLGNIDRCRKLYEKYL 76
+WL A+FE++ + A + A+ P+ D++ KYI +E LGNI R+++E+++
Sbjct: 128 LWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWM 187
Query: 77 EWALENCYAWSKYA*LERSLSETDRARSIFE 107
+W+ + W + E +E +RAR+I+E
Sbjct: 188 DWSPDQ-QGWLSFIKFELRYNEIERARTIYE 217
Score = 44.3 bits (103), Expect = 2e-05
Identities = 29/108 (26%), Positives = 51/108 (46%), Gaps = 3/108 (2%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
WL +FE+R ++ A I + PK +Y + E++ G + RCR +YE+ E
Sbjct: 196 WLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAKFEMKGGEVARCRSVYERATEK 255
Query: 79 ALENCYA---WSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
++ A + +A E E +RAR I++ A+ E L++
Sbjct: 256 LADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYR 303
Score = 40.8 bits (94), Expect = 2e-04
Identities = 30/117 (25%), Positives = 53/117 (44%), Gaps = 11/117 (9%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGN--------ID 66
+++ A+FE R ++ A I A+ PK + + +K++ E Q G+ +
Sbjct: 265 LFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVG 324
Query: 67 RCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
+ R YE + + N +W Y LE S+ DR R I+E AI+ + W+
Sbjct: 325 KRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQ 381
Score = 39.7 bits (91), Expect = 4e-04
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 31 NLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA 90
N+ GA I + +P + +I+ EL+ I+R R +YE+++ A+ +YA
Sbjct: 175 NIAGARQIFERWMDWSPDQQGWLSFIKFELRYNEIERARTIYERFV-LCHPKVSAYIRYA 233
Query: 91 *LERSLSETDRARSIFELAISQPASD 116
E E R RS++E A + A D
Sbjct: 234 KFEMKGGEVARCRSVYERATEKLADD 259
Score = 37.4 bits (85), Expect = 0.002
Identities = 33/127 (25%), Positives = 52/127 (39%), Gaps = 26/127 (20%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEKY 75
W A+ E + + A I AI + D + K YI+ E+ G ++R R LYE+
Sbjct: 493 WSKYAELERSLVETERARAIFELAISQPALDMPELLWKAYIDFEISEGELERTRALYERL 552
Query: 76 LEWALENCYAWSKYA*LERSLSETD----------------------RARSIFELAISQP 113
L+ ++ W +A E S +E + RAR+IF+ A +
Sbjct: 553 LD-RTKHYKVWVSFAKFEASAAELEEDENEDEDQEEDVIEHKKDCIKRARAIFDRANTYY 611
Query: 114 ASDMPEL 120
PEL
Sbjct: 612 KDSTPEL 618
Score = 33.5 bits (75), Expect = 0.030
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 45 KAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARS 104
+ PK KI + +L R RK +E + A N W KYA E S + RARS
Sbjct: 58 RPPKQKITDSTELSDYRL----RRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARS 113
Query: 105 IFELAI 110
++E AI
Sbjct: 114 VWERAI 119
Score = 30.4 bits (67), Expect = 0.26
Identities = 16/58 (27%), Positives = 29/58 (49%)
Query: 54 KYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
KY + E + R R ++E+ +E N W KYA E + AR++++ A++
Sbjct: 97 KYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVT 154
>At3g13210 crn-like protein
Length = 657
Score = 184 bits (467), Expect = 1e-47
Identities = 91/115 (79%), Positives = 98/115 (85%)
Query: 12 KFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKL 71
KFSFA +WLLAAQ EIRQLNL GA ILG+AIGKAPKDKI KKYIEIELQL NIDRCRKL
Sbjct: 376 KFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKL 435
Query: 72 YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNI 126
YE+YLEW+ NCYAW KYA E SL+ET+R R+IFELAISQPA DMPELLWK I
Sbjct: 436 YERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYI 490
Score = 45.1 bits (105), Expect = 1e-05
Identities = 26/91 (28%), Positives = 51/91 (55%), Gaps = 2/91 (2%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPK-DKILKKYIEIELQLGNIDRCRKLYEKYL 76
+W+ A FE++ ++ A + A+ P+ D++ K+I +E +LGNI R++ E+++
Sbjct: 93 VWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWI 152
Query: 77 EWALENCYAWSKYA*LERSLSETDRARSIFE 107
+ + AW + E +E + ARSI+E
Sbjct: 153 HCSPDQ-QAWLCFIKFELKYNEIECARSIYE 182
Score = 43.5 bits (101), Expect = 3e-05
Identities = 34/122 (27%), Positives = 51/122 (40%), Gaps = 21/122 (17%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEKY 75
W A+FE+ + I AI + D + K YI+ E+ G ++R R LYE+
Sbjct: 450 WRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERL 509
Query: 76 LEWALENCYAWSKYA*LERSLSE-----------------TDRARSIFELAISQPASDMP 118
L+ ++C W +A E S +E RAR IF+ A + P
Sbjct: 510 LD-RTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTP 568
Query: 119 EL 120
EL
Sbjct: 569 EL 570
Score = 37.7 bits (86), Expect = 0.002
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLE 77
+W E + N+ GA IL I +P + +I+ EL+ I+ R +YE+++
Sbjct: 127 LWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFV- 185
Query: 78 WALENCYAWSKYA*LERSLSETDRARSIFELAISQPASD 116
A+ +YA E + + A +FE A + A D
Sbjct: 186 LCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADD 224
Score = 29.6 bits (65), Expect = 0.44
Identities = 15/45 (33%), Positives = 23/45 (50%)
Query: 67 RCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
R RK +E + A N W KYA E + AR++++ A+S
Sbjct: 75 RRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVS 119
Score = 29.3 bits (64), Expect = 0.57
Identities = 24/95 (25%), Positives = 40/95 (41%), Gaps = 9/95 (9%)
Query: 43 IGKAPKDKILKKYIEIELQLGN--------IDRCRKLYEKYLEWALENCYAWSKYA*LER 94
I K + + K++ E Q G+ I + R YE + N +W + LE
Sbjct: 248 IPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEE 307
Query: 95 SLSETDRARSIFELAISQ-PASDMPELLWKVNIIY 128
++ DR R I+E A++ P + E + IY
Sbjct: 308 TVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIY 342
>At5g45990 CRN (crooked neck) protein
Length = 673
Score = 178 bits (451), Expect = 8e-46
Identities = 87/115 (75%), Positives = 99/115 (85%)
Query: 12 KFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKL 71
KFSFA +WLLAA++EIRQLNL GA ILG+AIGKAPK KI KKYIE+EL+L NIDRCRKL
Sbjct: 406 KFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIFKKYIEMELKLVNIDRCRKL 465
Query: 72 YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNI 126
YE++LEW+ ENCYAW YA E SL+ET+RAR+IFELAISQPA DMPELLWK I
Sbjct: 466 YERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMPELLWKTYI 520
Score = 54.3 bits (129), Expect = 2e-08
Identities = 27/91 (29%), Positives = 55/91 (59%), Gaps = 2/91 (2%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPK-DKILKKYIEIELQLGNIDRCRKLYEKYL 76
+W+ A+FE++ + A + ++ P+ D++ +KYI +E +LGN+ R+++E+++
Sbjct: 114 LWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWM 173
Query: 77 EWALENCYAWSKYA*LERSLSETDRARSIFE 107
W+ + AW + E +E +RARSI+E
Sbjct: 174 NWSPDQ-KAWLCFIKFELRYNEIERARSIYE 203
Score = 46.2 bits (108), Expect = 5e-06
Identities = 35/110 (31%), Positives = 50/110 (44%), Gaps = 9/110 (8%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEKY 75
W A+FEI + A I AI + D + K YI+ E+ G ++ R LYE+
Sbjct: 480 WRNYAEFEISLAETERARAIFELAISQPALDMPELLWKTYIDFEISEGEFEKTRALYERL 539
Query: 76 LEWALENCYAWSKYA*LERSLSE-----TDRARSIFELAISQPASDMPEL 120
L+ ++C W +A E S SE AR IF+ A + PEL
Sbjct: 540 LD-RTKHCKVWISFAKFEASASEHKEDGIKSARVIFDRANTYYKDTTPEL 588
Score = 38.1 bits (87), Expect = 0.001
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 23 AQFEIRQLNLKGAHVILGSA---IGKAPKDKILKKYIEIELQLGN--------IDRCRKL 71
A+FE R ++ A I A I K +++ KK++ E Q G+ + + R
Sbjct: 257 AEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFE 316
Query: 72 YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
YE + N +W Y LE S+ DR R I+E AI+ + W+
Sbjct: 317 YEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQ 368
Score = 36.6 bits (83), Expect = 0.004
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLE 77
+W E + N+ GA I + +P K +I+ EL+ I+R R +YE+++
Sbjct: 148 LWEKYIYMEEKLGNVTGARQIFERWMNWSPDQKAWLCFIKFELRYNEIERARSIYERFV- 206
Query: 78 WALENCYAWSKYA*LE-RSLSETDRARSIFELAISQPASD 116
A+ +YA E + + AR ++E A+ + A+D
Sbjct: 207 LCHPKVSAFIRYAKFEMKRGGQVKLAREVYERAVDKLAND 246
Score = 35.8 bits (81), Expect = 0.006
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGN-IDRCRKLYEKYLE 77
WL +FE+R ++ A I + PK +Y + E++ G + R++YE+ ++
Sbjct: 182 WLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEMKRGGQVKLAREVYERAVD 241
Query: 78 WALENCYA---WSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
+ A + +A E E +RAR I++ A+ E L+K
Sbjct: 242 KLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYK 290
Score = 32.3 bits (72), Expect = 0.068
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 4/66 (6%)
Query: 45 KAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARS 104
+ PK KI + +L R RK +E + A N W KYA E S + RARS
Sbjct: 44 RPPKQKITDSTELSDYRL----RRRKEFEDQIRRARWNIQVWVKYAKWEESQMDYARARS 99
Query: 105 IFELAI 110
++E A+
Sbjct: 100 VWERAL 105
Score = 30.0 bits (66), Expect = 0.34
Identities = 16/58 (27%), Positives = 29/58 (49%)
Query: 54 KYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
KY + E + R R ++E+ LE N W KYA E + AR++++ +++
Sbjct: 83 KYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVT 140
>At3g51110 crooked neck-like protein
Length = 599
Score = 137 bits (345), Expect = 1e-33
Identities = 66/85 (77%), Positives = 75/85 (87%)
Query: 29 QLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSK 88
QLNL GA ILG+AIGKAPK KI KKYIEIEL LGNIDRCRKLY +YLEW+ E+CYAW+K
Sbjct: 383 QLNLSGARRILGNAIGKAPKHKIFKKYIEIELHLGNIDRCRKLYARYLEWSPESCYAWTK 442
Query: 89 YA*LERSLSETDRARSIFELAISQP 113
+A ERSL+ET+RAR+IFELAISQP
Sbjct: 443 FAEFERSLAETERARAIFELAISQP 467
Score = 60.1 bits (144), Expect = 3e-10
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPK-DKILKKYIEIELQLGNIDRCRKLYEKYL 76
+WL A+FE+R ++ A + A+ P+ D+ KYI +E LGNID RK++E+++
Sbjct: 102 LWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWM 161
Query: 77 EWALENCYAWSKYA*LERSLSETDRARSIFE 107
+W+ + AW + E +E +R+RSI+E
Sbjct: 162 DWSPDQ-QAWLCFIKFELRYNEIERSRSIYE 191
Score = 38.9 bits (89), Expect = 7e-04
Identities = 29/79 (36%), Positives = 38/79 (47%), Gaps = 4/79 (5%)
Query: 32 LKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA* 91
LK A S I + PK KI E +L R RK +E + A N W +YA
Sbjct: 18 LKEAREREDSRILRPPKQKITDSDELAEYRL----RRRKEFEDQIRGAKTNSQVWVRYAD 73
Query: 92 LERSLSETDRARSIFELAI 110
E S + DRARS++E A+
Sbjct: 74 WEESQKDHDRARSVWERAL 92
Score = 37.4 bits (85), Expect = 0.002
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 23 AQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGN--------IDRCRKL 71
A+FE ++ A + A+ PK + + KK++ E Q GN + R +
Sbjct: 245 AEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQ 304
Query: 72 YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
YE + N +W Y LE +L + DR R ++E AI+
Sbjct: 305 YEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIA 344
Score = 35.4 bits (80), Expect = 0.008
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 1/80 (1%)
Query: 31 NLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA 90
N+ GA I + +P + +I+ EL+ I+R R +YE+++ ++ +YA
Sbjct: 149 NIDGARKIFERWMDWSPDQQAWLCFIKFELRYNEIERSRSIYERFV-LCHPKASSFIRYA 207
Query: 91 *LERSLSETDRARSIFELAI 110
E S+ AR ++E AI
Sbjct: 208 KFEMKNSQVSLARIVYERAI 227
Score = 33.9 bits (76), Expect = 0.023
Identities = 25/109 (22%), Positives = 47/109 (42%), Gaps = 4/109 (3%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
WL +FE+R ++ + I + PK +Y + E++ + R +YE+ +E
Sbjct: 170 WLCFIKFELRYNEIERSRSIYERFVLCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEM 229
Query: 79 AL----ENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
E + +A E E +RAR +++ A+ E L+K
Sbjct: 230 LKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYK 278
>At3g11963 pre-rRNA processing protein like
Length = 1126
Score = 40.0 bits (92), Expect = 3e-04
Identities = 31/97 (31%), Positives = 46/97 (46%), Gaps = 4/97 (4%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIE---IELQLGNIDRCRKLYEK 74
+WL Q ++Q N + ++ A+ P+ K +K + +E + G DR R L+E
Sbjct: 987 IWLRKIQSSLKQ-NEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEG 1045
Query: 75 YLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
L + WS Y E L E D RS+FE AIS
Sbjct: 1046 VLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAIS 1082
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 72 YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
+EK + + + + W KY SL++ ++ARSI E A+
Sbjct: 866 FEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERAL 904
Score = 26.9 bits (58), Expect = 2.8
Identities = 15/66 (22%), Positives = 35/66 (52%), Gaps = 3/66 (4%)
Query: 55 YIEIELQLGNIDRCRKLYEKYLEWAL---ENCYAWSKYA*LERSLSETDRARSIFELAIS 111
Y++ E++LG D R L+E+ + +L + + + K+ E+S+ + +R + + A+
Sbjct: 1060 YLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAME 1119
Query: 112 QPASDM 117
S +
Sbjct: 1120 YANSTL 1125
>At5g28740 putative protein
Length = 917
Score = 37.7 bits (86), Expect = 0.002
Identities = 29/92 (31%), Positives = 48/92 (51%), Gaps = 8/92 (8%)
Query: 33 KGAHVILGSAIGKAPKDKILKKY---IEIELQLGNIDRCRKLYEKYLEWALENC---YAW 86
K A + A K P+ + L+ Y I ++ + R R++YE+ +E L +
Sbjct: 641 KRAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMC 700
Query: 87 SKYA*LERSLSETDRARSIFELA--ISQPASD 116
K+A LERSL E DRAR++++ + + P SD
Sbjct: 701 IKFAELERSLGEIDRARALYKYSSQFADPRSD 732
Score = 32.3 bits (72), Expect = 0.068
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 16 ANMWLLAAQFEIRQLNLKGAHVILGSAI--------------GKAPKDKILKK------- 54
A++W A+ E+R N KGA ++ A G P L +
Sbjct: 461 ASVWCEWAEMELRHKNFKGALELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSF 520
Query: 55 YIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
Y+++E LG ++ R +YEK L+ + YA L + A ++E +
Sbjct: 521 YVDLEESLGTLESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGV 576
>At4g03430 putative pre-mRNA splicing factor
Length = 1029
Score = 35.4 bits (80), Expect = 0.008
Identities = 23/105 (21%), Positives = 45/105 (41%), Gaps = 2/105 (1%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLE 77
+WL A + E + A ++L A + +++ K +E +LGN++ R+L + L+
Sbjct: 729 IWLAAFKLEFENKEPERARMLLAKARERGGTERVWMKSAIVERELGNVEEERRLLNEGLK 788
Query: 78 WALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLW 122
W LE ++AR ++ + +P LW
Sbjct: 789 QFPTFFKLWLMLGQLEERFKHLEQARKAYDTGLKHCPHCIP--LW 831
Score = 27.7 bits (60), Expect = 1.7
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 16 ANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKIL 52
A +WL A + E+R N + A ++ A+ PK IL
Sbjct: 862 AELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGIL 898
Score = 26.2 bits (56), Expect = 4.9
Identities = 20/93 (21%), Positives = 43/93 (45%), Gaps = 1/93 (1%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKD-KILKKYIEIELQLGNIDRCRKLYEKYL 76
+W+ +A E N++ +L + + P K+ ++E + ++++ RK Y+ L
Sbjct: 762 VWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGL 821
Query: 77 EWALENCYAWSKYA*LERSLSETDRARSIFELA 109
+ W A LE ++ ++AR+I A
Sbjct: 822 KHCPHCIPLWLSLADLEEKVNGLNKARAILTTA 854
>At3g17040 unknown protein
Length = 652
Score = 35.0 bits (79), Expect = 0.010
Identities = 30/94 (31%), Positives = 41/94 (42%), Gaps = 6/94 (6%)
Query: 20 LLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYI---EIELQLGNIDRCRKLYEKYL 76
L A+ R K A IL I P+D + Y+ +I + + R LYEK
Sbjct: 172 LYKAKVLARNFRYKDAEKILEKCIAYWPEDG--RPYVALGKILSKQSKLAEARILYEKGC 229
Query: 77 EWAL-ENCYAWSKYA*LERSLSETDRARSIFELA 109
+ EN Y W +A LE L RAR +F+ A
Sbjct: 230 QSTQGENSYIWQCWAVLENRLGNVRRARELFDAA 263
Score = 34.3 bits (77), Expect = 0.018
Identities = 18/73 (24%), Positives = 33/73 (44%)
Query: 50 KILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELA 109
+ L+ + +E + GN+ R+L+ L ++ W +A LE +T+RA I L
Sbjct: 479 RCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLY 538
Query: 110 ISQPASDMPELLW 122
Q + + W
Sbjct: 539 FQQRTEVVDDASW 551
Score = 33.1 bits (74), Expect = 0.040
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 55 YIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPA 114
+ ++E+Q RKL+EK ++ + +N +AW + E + +R R + ++ +
Sbjct: 345 WAQLEIQQERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNP 404
Query: 115 SDMPELLWKVNII 127
D P LL + ++
Sbjct: 405 RD-PVLLQSLGLL 416
Score = 30.8 bits (68), Expect = 0.20
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKIL-KKYIEIELQLGNIDRCRKL 71
WL AQ EI+Q A + A+ +PK++ + E +GN++R RKL
Sbjct: 342 WLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKL 395
Score = 27.3 bits (59), Expect = 2.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 58 IELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSI 105
+E +LGN+ R R+L++ ++ AW +A LE +AR++
Sbjct: 246 LENRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNL 293
>At1g17760 unknown protein
Length = 734
Score = 32.3 bits (72), Expect = 0.068
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 13 FSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILK-KYIEIELQLGNIDRCRKL 71
+ + ++W A++ ++ + A + A+ P ++LK + E+E G I +KL
Sbjct: 263 YHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAIPDSEMLKYAFAEMEESRGAIQSAKKL 322
Query: 72 YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPA 114
YE L A N A +Y R + AR F A P+
Sbjct: 323 YENIL-GASTNSLAHIQYLRFLRRAEGVEAARKYFLDARKSPS 364
>At5g28220 putative protein
Length = 293
Score = 30.0 bits (66), Expect = 0.34
Identities = 30/108 (27%), Positives = 47/108 (42%), Gaps = 6/108 (5%)
Query: 21 LAAQFEIRQLNLKG----AHVILGSAIGKAPKDKIL-KKYIEIELQLGNIDRCRKLYEKY 75
++ + E L KG A S + P D+ + K+ + I LG +L KY
Sbjct: 89 ISGRLEALLLEAKGLWGEAEEAYASLLEDNPLDQAIHKRRVAISKALGKPSIAIELLNKY 148
Query: 76 LEWALENCYAWSKYA*LERSLSETDRARSIF-ELAISQPASDMPELLW 122
LE + + AW + A L SL +A + EL +SQP + L +
Sbjct: 149 LELFMADHDAWRELAELYLSLQMYKQAAFCYEELILSQPTVPLYHLAY 196
>At3g10100 hypothetical protein
Length = 1004
Score = 27.3 bits (59), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 69 RKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFEL 108
R L+E Y+E+ L+ +W+ +++LS T+ +F L
Sbjct: 97 RLLHEDYVEFDLDPVVSWNTEITAKKTLSTTESVAEVFAL 136
>At2g09910 pseudogene
Length = 985
Score = 26.9 bits (58), Expect = 2.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 69 RKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFEL 108
R L+E Y+E+ L+ W+ ++++LS T+ +F L
Sbjct: 98 RLLHEDYVEFDLDPIVHWNTEITVKKTLSTTESVAEVFTL 137
>At1g79460 putative protein
Length = 785
Score = 26.9 bits (58), Expect = 2.8
Identities = 17/43 (39%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 53 KKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERS 95
K+Y+E+EL R +KYL+ +E+ A+ YA LERS
Sbjct: 385 KQYLEMELSSWVKTSVR---DKYLKKEVEDALAFPSYASLERS 424
>At4g28200 unknown protein
Length = 648
Score = 26.6 bits (57), Expect = 3.7
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 4 VSTLDTSQKFSFANMWLLAAQFEIRQLNLKGAH----VILGSAIGKAPKDKILKKYIEIE 59
+S L ++ +++ LA+ L KGAH + P + K IEIE
Sbjct: 521 MSILSATKSHGSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIE 580
Query: 60 LQL------GNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIF 106
L + RKLY+ + ++ W Y LE L ++ A ++
Sbjct: 581 TNLISVGDKDGLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVY 633
>At3g60000 putative protein
Length = 451
Score = 26.2 bits (56), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 2/44 (4%)
Query: 45 KAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSK 88
K P D KK ++ QL ++ + L+ +YL+W N A K
Sbjct: 234 KVPADT--KKQRKVTEQLEDVHSLKLLHNRYLQWRFANANAQVK 275
>At3g14730 hypothetical protein
Length = 653
Score = 26.2 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 89 YA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
YA + L D+ +ELAIS+P D P ++W+
Sbjct: 507 YACVIDMLGRADKLEEAYELAISKPICDNP-VVWR 540
>At1g04080 unknown protein
Length = 768
Score = 25.8 bits (55), Expect = 6.3
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 53 KKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LE-RSLSETDRARSIFELAIS 111
KK+ + E ++G +D+ ++YE+ + + W Y + + + R +FE A+
Sbjct: 140 KKFADHEARVGAMDKVVEVYERAVLGVTYSVDIWLHYCTFAINTYGDPETIRRLFERALV 199
Query: 112 QPASD-MPELLWKVNIIY 128
+D + LW I Y
Sbjct: 200 YVGTDFLSSPLWDKYIEY 217
>At4g31530 unknown protein
Length = 324
Score = 25.4 bits (54), Expect = 8.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 43 IGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALE 81
+G+ +LK+ I L L ++D+ KL+ K E++L+
Sbjct: 85 VGQLVVASLLKRNIRSRLLLRDLDKATKLFGKQDEYSLQ 123
>At4g26780 grpE like protein
Length = 327
Score = 25.4 bits (54), Expect = 8.3
Identities = 14/38 (36%), Positives = 23/38 (59%), Gaps = 3/38 (7%)
Query: 45 KAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALEN 82
K KDK+L+ Y E+E +DR R+ E ++A++N
Sbjct: 163 KQLKDKVLRTYAEME---NVMDRTRRDAENTKKYAVQN 197
>At4g20730 putative protein
Length = 824
Score = 25.4 bits (54), Expect = 8.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 69 RKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFEL 108
R L+E ++E+ L+ +W+ +++LS T+ +F L
Sbjct: 98 RLLHEDHVEFDLDPVVSWNTEITAKKTLSTTESVAEVFAL 137
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,659,805
Number of Sequences: 26719
Number of extensions: 95093
Number of successful extensions: 338
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 60
length of query: 128
length of database: 11,318,596
effective HSP length: 87
effective length of query: 41
effective length of database: 8,994,043
effective search space: 368755763
effective search space used: 368755763
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0060.17