BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.14
(651 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 347 9e-96
At1g47910 reverse transcriptase, putative 347 1e-95
At2g17910 putative non-LTR retroelement reverse transcriptase 338 4e-93
At2g31080 putative non-LTR retroelement reverse transcriptase 336 2e-92
At4g10830 putative protein 328 6e-90
At4g15590 reverse transcriptase like protein 325 4e-89
At2g31520 putative non-LTR retroelement reverse transcriptase 324 1e-88
At2g25550 putative non-LTR retroelement reverse transcriptase 324 1e-88
At2g45230 putative non-LTR retroelement reverse transcriptase 322 3e-88
At2g05200 putative non-LTR retroelement reverse transcriptase 321 7e-88
At2g41580 putative non-LTR retroelement reverse transcriptase 307 1e-83
At2g01840 putative non-LTR retroelement reverse transcriptase 306 2e-83
At1g24640 hypothetical protein 303 2e-82
At3g45550 putative protein 303 2e-82
At2g11240 pseudogene 298 6e-81
At4g09710 RNA-directed DNA polymerase -like protein 295 5e-80
At3g25485 unknown protein 294 9e-80
At2g28980 putative non-LTR retroelement reverse transcriptase 285 7e-77
At1g25430 hypothetical protein 284 1e-76
At2g16680 putative non-LTR retroelement reverse transcriptase 280 2e-75
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 347 bits (891), Expect = 9e-96
Identities = 209/614 (34%), Positives = 340/614 (55%), Gaps = 20/614 (3%)
Query: 45 LKDWNKAVFGDLTTRREEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESL 104
L WNK D++T VQ++ LD+ + + L +EE LL DF VL E +
Sbjct: 826 LTSWNK----DISTPEALKVQEL--LDLHQSDDLLKKEE-----ELLKDFDVVLEQEEVV 874
Query: 105 LCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWV-EGVWEEDPSRVKAAVESFFEA 163
QK+R +W GD+N+ FFH++ +RR N I L +G W + ++ +++
Sbjct: 875 WMQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKR 934
Query: 164 KFKSDV*DRPRLEGVP---FKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNF 220
+ D D +E +P F LS++D S L P +E++ A+ + G K+PGPDGF
Sbjct: 935 LYSLDDLDAV-VEQLPQEGFTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQP 993
Query: 221 RFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCI 280
F +Q W+V+ V K V +F+ G++ + N +VLI KV P+ + +FRPISL +
Sbjct: 994 VFYQQGWEVVGESVTKFVMDFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVL 1053
Query: 281 YKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKK--QPSIIFK 338
+K I+K++ RL V+ K+I Q +F+ R D++VV+ EV+H ++RKK + ++ K
Sbjct: 1054 FKTITKVMVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLK 1113
Query: 339 VDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLR 398
+D EKAYD + W LE + W+ WIM C+ S+ +L NG T FK RGLR
Sbjct: 1114 LDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLR 1173
Query: 399 QGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATI 458
QGDPL+P+LF+ E L L ++S+ K+K +K+ + +G +S + FADD + EA+I
Sbjct: 1174 QGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKI-SQSGPRLSHICFADDLILFAEASI 1232
Query: 459 QNLVSLKCILRCFELVSGLKVNFHKSKL-AAIAIETGVAHQFASFLNCKVMTIPFVYLGI 517
+ L+ +L F SG KV+ KSK+ + + + + + K YLG+
Sbjct: 1233 DQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGV 1292
Query: 518 PVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPAC 577
P+ + +T+ VIK+ +RLA WK +++SF GR+ L ++VL+++ + +S ++P
Sbjct: 1293 PILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQS 1352
Query: 578 VVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRW 637
+ +++ R FLWG++ K+ V W VC P+ GGLGI+ N++L+ K WR
Sbjct: 1353 TLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRV 1412
Query: 638 RTKKQALWCQVIRA 651
+LW QV+R+
Sbjct: 1413 LNDGSSLWAQVVRS 1426
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 347 bits (890), Expect = 1e-95
Identities = 214/658 (32%), Positives = 330/658 (49%), Gaps = 19/658 (2%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR W+ + ++ W G +V EKL R + W K++ + R
Sbjct: 24 FRFDKRWIGKDGLLEAISQGWNLDSGFREGQFV--EKLTNCRRAISKWRKSL---IPFGR 78
Query: 61 EEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQN 120
+ + LDV + + S+EE+ L R E QK+RS W+ GD N
Sbjct: 79 QTIEDLKAELDVAQRDDDRSREEIT---ELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNN 135
Query: 121 SGFFHSTINWKRRTNSIVGLWVE-GVWEEDPSRVKAAVESFFEAKFKS---DV*DRPRLE 176
S FFH+ +R N I GL E G+W + ++ S+F+ F + V D
Sbjct: 136 SKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEAL-- 193
Query: 177 GVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIK 236
G ++D N +L E E++ A++ K+PGPDG F ++ W ++K D++
Sbjct: 194 GEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLS 253
Query: 237 AVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVV 296
V F + G + + N + I LIPK P + E RPISL YKVISK+L RL TV+
Sbjct: 254 LVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVL 313
Query: 297 GKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRK---KQPSIIFKVDYEKAYDTVDWSFL 353
+I E Q AFV R + D++++ E+ H ++ K + K D KAYD V+W+F+
Sbjct: 314 PNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFI 373
Query: 354 EYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAE 413
E ++ +M FC KWISWIM C+ + VL+NG P G ERGLRQGDPL+P+LF+ E
Sbjct: 374 EALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTE 433
Query: 414 GLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFEL 473
L + + R + G+KV A VS L FADD++F +A + + IL+ +E
Sbjct: 434 VLIANIRKAERQNLITGIKV-ATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYES 492
Query: 474 VSGLKVNFHKSKLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPV 532
VSG ++NF KS + +E + L + YLG+P S K + V
Sbjct: 493 VSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFV 552
Query: 533 IKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWG 592
++++R+ W K +S GG+ +I+SV + LP +S FR+P + + F W
Sbjct: 553 RDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWS 612
Query: 593 ASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
++ + + W+ W +C K GGLG +++D FN +LL K LWR T +L+ +V +
Sbjct: 613 SNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFK 670
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 338 bits (868), Expect = 4e-93
Identities = 199/555 (35%), Positives = 310/555 (55%), Gaps = 15/555 (2%)
Query: 107 QKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVKAAV-ESFFEAKF 165
QK+R +WLA GD+N+GFFH+T++ +R N + L E E + K + SFFE F
Sbjct: 316 QKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLF 375
Query: 166 KSD--V*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFI 223
S + LEG+ K S+ +++ LI + E+E+ +AV++ +PGPDGF F
Sbjct: 376 TSTYILTHNNHLEGLQAKVTSEMNHN-LIQEVTELEVYNAVFSINKESAPGPDGFTALFF 434
Query: 224 KQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKV 283
+Q WD++K ++ + F+ G + N + I LIPK+ SPQ +++ RPISL +YK+
Sbjct: 435 QQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKI 494
Query: 284 ISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVK---RKKQPSIIFKVD 340
ISK+L RL + ++ Q AFV R + D+++V +E+IH ++ R + + FK D
Sbjct: 495 ISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTD 554
Query: 341 YEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQG 400
KAYD V+W FLE MM + F +KWISWIM C+ S S SVL+NG P G RG+RQG
Sbjct: 555 MSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQG 614
Query: 401 DPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQN 460
DPL+P LF+ E L + + + K G++ D + V+ L FADDT+ + +AT Q
Sbjct: 615 DPLSPALFVLCTEALIHILNKAEQAGKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQE 673
Query: 461 LVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCK----VMTIPFVYLG 516
L L + +SG +N +KS AI V Q ++ + + YLG
Sbjct: 674 CEELMQCLSQYGQLSGQMINLNKS---AITFGKNVDIQIKDWIKSRSGISLEGGTGKYLG 730
Query: 517 IPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPA 576
+P S + + +K+++RL W K +S GG+ L++S+ ALP+ +S F++P
Sbjct: 731 LPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPK 790
Query: 577 CVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWR 636
+ + +M DF W + ++I W+ W + PKD GG G KDL FN++LL K WR
Sbjct: 791 NLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWR 850
Query: 637 WRTKKQALWCQVIRA 651
+K +L+ +V ++
Sbjct: 851 VLQEKGSLFSRVFQS 865
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 336 bits (862), Expect = 2e-92
Identities = 208/631 (32%), Positives = 348/631 (54%), Gaps = 22/631 (3%)
Query: 32 YVLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEE----TGLSQEEVATR 87
YV E L+ + +L+ WN+ VFGD+ R+E++V D+KE + LS + +A
Sbjct: 129 YVQLEPLQ--QRKLRKWNREVFGDIHVRKEKLVA-----DIKEVQDLLGVVLSDDLLAKE 181
Query: 88 ESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGL-WVEGVW 146
E LL + VL E+L QK+R +++ GD+N+ FFH++ +RR N I L + W
Sbjct: 182 EVLLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRW 241
Query: 147 EEDPSRVKAAVESFFEAKFK-SDV*D-RPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAV 204
D ++A ++++ + DV + R L F ++S+++ + L+ + E+ AV
Sbjct: 242 VTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAV 301
Query: 205 WACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNS 264
+ G K+PGPDG+ F +Q W+ + V + V EF+ G N + +VLI KV
Sbjct: 302 KSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAK 361
Query: 265 PQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVI 324
P+ + +FRP+SL ++K+I+K++ TRL V+ K+I Q +F+ R +D++V++ E +
Sbjct: 362 PERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAV 421
Query: 325 HEVKRKK--QPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVL 382
H ++RKK + ++ K+D EKAYD V W FL+ + W S IM + S+SVL
Sbjct: 422 HSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVL 481
Query: 383 VNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVS 442
NG T F RGLRQGDPL+P+LF+ E L L + SV ++K + V G ++S
Sbjct: 482 WNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCG-GSKLS 540
Query: 443 LLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKL---AAIAIETGVAHQF 499
+ FADD + EA++ + ++ +L F SG KV+ KSK+ ++ E
Sbjct: 541 HVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISE 600
Query: 500 ASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQS 559
S + C YLG+P+ + +T+ V++++ RLA WK + +S GRI L ++
Sbjct: 601 ESGIGCTKEL--GKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKA 658
Query: 560 VLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGI 619
VLS++P+ +S +P + +R R FLWG++ K+ + W +C+PK GG+G+
Sbjct: 659 VLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGL 718
Query: 620 KDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
+ N++L+ K WR K++LW +V+R
Sbjct: 719 RSARDMNKALVAKVGWRLLQDKESLWARVVR 749
>At4g10830 putative protein
Length = 1294
Score = 328 bits (841), Expect = 6e-90
Identities = 191/630 (30%), Positives = 336/630 (53%), Gaps = 27/630 (4%)
Query: 48 WNKAVFGD-------LTTRREEVVQ-----------KINILDVKEEE--TGLSQEEVATR 87
WNKA+ G + T R+ + + +IN L ++ + +++ E T
Sbjct: 621 WNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTI 680
Query: 88 ESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLW-VEGVW 146
+ + R E QK+R++W+ EGD+N+ FFH+ + N +V + EG+
Sbjct: 681 SHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMI 740
Query: 147 EEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPFKTL-SDSDNSVLIGPMDEVEIKDAVW 205
+ + FF ++S+ ++ FK + ++ N L + ++EI +A+
Sbjct: 741 YRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAIC 800
Query: 206 ACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSP 265
G +K+PGPDG RF K W+++ DVIK V+ F+R + N + I +IPK+ +P
Sbjct: 801 HIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNP 860
Query: 266 QPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIH 325
+ L+++RPI+L +YK+ISK L RL + ++ + Q AF+ R + D+V++ +E++H
Sbjct: 861 ETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMH 920
Query: 326 EVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVL 382
+K +K+ S + K D KAYD V+W+FLE M F WI WIMG ++S + SVL
Sbjct: 921 SLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVL 980
Query: 383 VNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVS 442
VNG P G + +RG+RQGDPL+P+LF+ A+ LN L +N V +G+++G V+
Sbjct: 981 VNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVP-GVT 1039
Query: 443 LLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLA-AIAIETGVAHQFAS 501
LQFADD++F ++ ++N +LK + +E SG K+N KS + + ++ +
Sbjct: 1040 HLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKN 1099
Query: 502 FLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVL 561
L + YLG+P + +I++++ R + W K +S G+ +++SV
Sbjct: 1100 ILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVA 1159
Query: 562 SALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKD 621
++P+ +S F++P +V ++ +F W + + I W+ W + K GGLG +D
Sbjct: 1160 MSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRD 1219
Query: 622 LDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
L FN +LL K +WR +L+ ++++A
Sbjct: 1220 LAKFNDALLAKQVWRMINNPNSLFARIMKA 1249
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 325 bits (834), Expect = 4e-89
Identities = 212/661 (32%), Positives = 344/661 (51%), Gaps = 42/661 (6%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR WL ++T++W G + V L LR +LK WNK VFG++ R+
Sbjct: 55 FRFEAAWLSHEGFKELLTASWDT----GLSTPVA---LNRLRWQLKKWNKEVFGNIHVRK 107
Query: 61 EEVVQKI----NILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAE 116
E+VV + ++L+V + + L +E+ +LL +F +L E+L QK+R + LA
Sbjct: 108 EKVVSDLKAVQDLLEVVQTDDLLMKED-----TLLKEFDVLLHQEETLWFQKSREKLLAL 162
Query: 117 GDQNSGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKFK----SDV*D 171
GD+N+ FFH++ +RR N I L E W + ++ ++ + S V
Sbjct: 163 GDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRG 222
Query: 172 RPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLK 231
EG P T + +N L P E+ AV + G K+PGPDG+ F +Q W+ +
Sbjct: 223 TLPTEGFPRLTREEKNN--LNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVG 280
Query: 232 GDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATR 291
V K V EF+ G + N +VL+ KV P+ + +FRP+SL ++K+I+K++ R
Sbjct: 281 ESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIR 340
Query: 292 LSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKK--QPSIIFKVDYEKAYDTVD 349
L V+ K+I Q +F+ R D++VV+ E +H ++RKK + ++ K+D EKAYD +
Sbjct: 341 LKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIR 400
Query: 350 WSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFL 409
W FL + WI IM C+ +S+L NG T F ERGLRQGDP++P+LF+
Sbjct: 401 WDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFV 460
Query: 410 FVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILR 469
E L + +V +K + + + G +VS + FADD + EA++ VSL+
Sbjct: 461 LCIERLCHQIETAVGRGDWKSISI-SQGGPKVSHVCFADDLILFAEASVAQKVSLEKSKI 519
Query: 470 CFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTW 529
F N + I ETG+ YLG+PV + T+
Sbjct: 520 FF------SNNVSRDLEGLITAETGIGSTREL----------GKYLGMPVLQKRINKDTF 563
Query: 530 EPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDF 589
V++++ +RL+ WK + +S GRI L ++VL ++P+ +S +PA +++ +++ R+F
Sbjct: 564 GEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNF 623
Query: 590 LWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
LWG++ ++ + W VC+PK GGLG++ NR+LL K WR K +LW +V+
Sbjct: 624 LWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVL 683
Query: 650 R 650
R
Sbjct: 684 R 684
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 324 bits (830), Expect = 1e-88
Identities = 187/557 (33%), Positives = 305/557 (54%), Gaps = 19/557 (3%)
Query: 107 QKARSRWLAEGDQNSGFFHSTINWK---RRTNSIVGLWVEGVWEEDPSRVKAAVESFFEA 163
QK+R++W+ EGDQN+G+FH+ + R N+I+ +G + + FF
Sbjct: 494 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMD--DQGRMFTGDKEIGNHAQDFFTN 551
Query: 164 KFKSDV*DRPRLEGVPFK-TLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRF 222
F ++ ++ FK T++++ N L + EI DA+ G +K+PGPDG RF
Sbjct: 552 IFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARF 611
Query: 223 IKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYK 282
K WD++ DVI V++F+ N + I +IPK+ +P L+++RPI+L +YK
Sbjct: 612 YKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYK 671
Query: 283 VISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKV 339
VISK L RL + + ++ + Q AF+ R + D+V++ +EV+H +K +K+ S + K
Sbjct: 672 VISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKT 731
Query: 340 DYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQ 399
D KAYD V+W FLE M FC+KWI WIM ++S SVL+NGSP G RG+RQ
Sbjct: 732 DVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQ 791
Query: 400 GDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQ 459
GDPL+P+LF+ + L+ L +GV++G + ++ LQFADD++F +A ++
Sbjct: 792 GDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPAITHLQFADDSLFFCQANVR 850
Query: 460 NLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIP-----FVY 514
N +LK + +E SG K+N KS I + V S L +++ IP Y
Sbjct: 851 NCQALKDVFDVYEYYSGQKINVQKS---MITFGSRVYGSTQSKLK-QILEIPNQGGGGKY 906
Query: 515 LGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRI 574
LG+P + +E +I +++ R + W + +S G+ +++SV A+P+ +S F++
Sbjct: 907 LGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKL 966
Query: 575 PACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWL 634
P +V ++ +F W + + I WV W + K GGLG +DL FN +LL K
Sbjct: 967 PKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQA 1026
Query: 635 WRWRTKKQALWCQVIRA 651
WR +L+ +V++A
Sbjct: 1027 WRLIQYPNSLFARVMKA 1043
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 324 bits (830), Expect = 1e-88
Identities = 187/557 (33%), Positives = 305/557 (54%), Gaps = 19/557 (3%)
Query: 107 QKARSRWLAEGDQNSGFFHSTINWK---RRTNSIVGLWVEGVWEEDPSRVKAAVESFFEA 163
QK+R++W+ EGDQN+G+FH+ + R N+I+ +G + + FF
Sbjct: 720 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMD--DQGRMFTGDKEIGNHAQDFFTN 777
Query: 164 KFKSDV*DRPRLEGVPFK-TLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRF 222
F ++ ++ FK T++++ N L + EI DA+ G +K+PGPDG RF
Sbjct: 778 IFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARF 837
Query: 223 IKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYK 282
K WD++ DVI V++F+ N + I +IPK+ +P L+++RPI+L +YK
Sbjct: 838 YKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYK 897
Query: 283 VISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKV 339
VISK L RL + + ++ + Q AF+ R + D+V++ +EV+H +K +K+ S + K
Sbjct: 898 VISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKT 957
Query: 340 DYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQ 399
D KAYD V+W FLE M FC+KWI WIM ++S SVL+NGSP G RG+RQ
Sbjct: 958 DVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQ 1017
Query: 400 GDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQ 459
GDPL+P+LF+ + L+ L +GV++G + ++ LQFADD++F +A ++
Sbjct: 1018 GDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPAITHLQFADDSLFFCQANVR 1076
Query: 460 NLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIP-----FVY 514
N +LK + +E SG K+N KS I + V S L +++ IP Y
Sbjct: 1077 NCQALKDVFDVYEYYSGQKINVQKS---MITFGSRVYGSTQSRLK-QILEIPNQGGGGKY 1132
Query: 515 LGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRI 574
LG+P + +E +I +++ R + W + +S G+ +++SV A+P+ +S F++
Sbjct: 1133 LGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKL 1192
Query: 575 PACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWL 634
P +V ++ +F W + + I WV W + K GGLG +DL FN +LL K
Sbjct: 1193 PKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQA 1252
Query: 635 WRWRTKKQALWCQVIRA 651
WR +L+ +V++A
Sbjct: 1253 WRLIQYPNSLFARVMKA 1269
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 322 bits (826), Expect = 3e-88
Identities = 204/656 (31%), Positives = 339/656 (51%), Gaps = 25/656 (3%)
Query: 7 WLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQK 66
W+ ++ + W K + ++ EK+ R + W + R +E+ K
Sbjct: 246 WVQREGFKDLLCNFWSQQSTKT--NALMMEKIASCRREISKWKRVSKPSSAVRIQELQFK 303
Query: 67 INILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHS 126
LD ++ + E+A + L + + E +K+R W+ GD+N+ +FH+
Sbjct: 304 ---LDAATKQIPFDRRELARLKKELSQEYN---NEEQFWQEKSRIMWMRNGDRNTKYFHA 357
Query: 127 TINWKRRTNSIVGLWVEG--VWEEDPSRVKAAVESFFEAKFKSDV*DRP--RLEGVPFKT 182
+R N I L E W D + A E++F+ F S+ LE +
Sbjct: 358 ATKNRRAQNRIQKLIDEEGREWTSDEDLGRVA-EAYFKKLFASEDVGYTVEELENLT-PL 415
Query: 183 LSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFW 242
+SD N+ L+ P+ + E++ A ++ +K PGPDG N +QFW+ + + + V+ F+
Sbjct: 416 VSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFF 475
Query: 243 RRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDE 302
R G+ G N + I LIPK+ + + +FRPISL IYKVI KL+A RL ++ +I E
Sbjct: 476 RSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISE 535
Query: 303 RQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGR 359
Q AFV R + D++++ +E++H + + S I K D KAYD V+W FLE M
Sbjct: 536 TQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRG 595
Query: 360 MNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLF 419
+ F WI IM C++S VL+NG+P GE RGLRQGDPL+P+LF+ E L +
Sbjct: 596 LGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKML 655
Query: 420 QNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKV 479
Q++ + ++ G+KV A +S L FADD++F + + L + I+ + L SG +V
Sbjct: 656 QSAEQKNQITGLKV-ARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRV 714
Query: 480 NFHKSKLAAIAIETGVAHQFASFLNCKVMTI----PFVYLGIPVGARASCLKTWEPVIKK 535
N+ KS +I ++ + + K+ VYLG+P + S + T + +
Sbjct: 715 NYLKS---SIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDR 771
Query: 536 MRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASD 595
+ ++ W+ +S GG+ L+++V ALP +S F+IP + + +M +F W
Sbjct: 772 LGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKK 831
Query: 596 GGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
G+ + W W + +PK VGGLG K+++ FN +LLGK LWR T+K +L +V ++
Sbjct: 832 EGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKS 887
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 321 bits (823), Expect = 7e-88
Identities = 194/655 (29%), Positives = 332/655 (50%), Gaps = 18/655 (2%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR N D+ + ++ TW + G + K+ R + +W +
Sbjct: 138 FRFDNRLRDNDVVNALIQETWTNA-----GDASVLTKMNQCRREIINWTRLQ----NLNS 188
Query: 61 EEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQN 120
E+++K EE T +L + E Q++R WL GD+N
Sbjct: 189 AELIEKTQ--KALEEALTADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRN 246
Query: 121 SGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKFKSDV*-DRPRLEGV 178
+G+FH+ +R N + + + GV + + ++ + +F+ F S+ D ++
Sbjct: 247 TGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEA 306
Query: 179 PFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAV 238
+S DN L ++ E+KDAV++ +K+PGPDGF F +W ++ DV + +
Sbjct: 307 IEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREI 366
Query: 239 REFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGK 298
R F+ + R N + I LIPK P+ + ++RPI+L YK+++K++ R+ ++ K
Sbjct: 367 RLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPK 426
Query: 299 VIDERQFAFVGNRNMLDSVVVLNEVIHEVK---RKKQPSIIFKVDYEKAYDTVDWSFLEY 355
+I E Q AFV R + D+V++ +EV+H ++ KK S+ K D KAYD V+W FL+
Sbjct: 427 LISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKK 486
Query: 356 MMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGL 415
++ R F S WI W++ C+ S S S L+NG+P G+ RGLRQGDPL+P LF+ E L
Sbjct: 487 VLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVL 546
Query: 416 NGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVS 475
+GL + RL + GV+V + G V+ L FADDT+F ++ ++ L IL + S
Sbjct: 547 SGLCTRAQRLRQLPGVRVSIN-GPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKAS 605
Query: 476 GLKVNFHKSKLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIK 534
G +NFHKS + + V Q L + YLG+P + +I
Sbjct: 606 GQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIID 665
Query: 535 KMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGAS 594
K+R + W + +S G+ ++++VL+++PL +S F++P+ + + ++ F W
Sbjct: 666 KIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTK 725
Query: 595 DGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
++ +WV W + PK+ GGLG +D++ N SLL K WR ++L +++
Sbjct: 726 PDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRIL 780
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 307 bits (787), Expect = 1e-83
Identities = 190/591 (32%), Positives = 314/591 (52%), Gaps = 16/591 (2%)
Query: 70 LDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTIN 129
LD ++ T S +++ + +L D + R E K+R +W+ GD+NS FF +T+
Sbjct: 33 LDKEKSATFPSWTQISLLQDVLGDAY---REEEDFWRLKSRDKWMVGGDKNSKFFQATVK 89
Query: 130 WKRRTNSIVGLWVEGVWEEDPSRVKAAVE-SFFEAKFKSDV*DRPR--LEGVPFKTLSDS 186
R +NS+ L E E+ +R K + +FFE F S LEG K +++
Sbjct: 90 ANRVSNSLRFLVDENGNEQTVNREKGKIAVTFFEDLFSSSYPSSMDSVLEGFN-KRVTED 148
Query: 187 DNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGA 246
N L ++E EI AV++ +PGPDGF F ++ W ++K +I + F++ G
Sbjct: 149 MNQDLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQRQWPLVKNQIISDIELFFQTGI 208
Query: 247 WSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFA 306
N + + LIPK+ P + + RPISL +YK+ISK+L+ RL + ++ Q A
Sbjct: 209 LPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSA 268
Query: 307 FVGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGRMNFC 363
FV R + D++++ +E++H ++ ++ S ++FK D KAYD V+W FL+ ++ + F
Sbjct: 269 FVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFN 328
Query: 364 SKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSV 423
S WI+W+M C+ S S SVL+NG P G RGLRQGDPL+PFLF+ E L + +
Sbjct: 329 STWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAE 388
Query: 424 RLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHK 483
++ K G++ TG V+ L FADDT+ + +A+ + L + +SG +N K
Sbjct: 389 KIGKISGIQFNG-TGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEK 447
Query: 484 SKL---AAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRL 540
S + A + ET S + + T YLG+P + S + + +K+++RL
Sbjct: 448 SAITFGAKVNEETKQWIMNRSGIQTEGGT--GKYLGLPECFQGSKQVLFGFIKEKLQSRL 505
Query: 541 ALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRI 600
+ W K +S GG+ L++S+ A P+ ++ FR+ + +M DF W + K+I
Sbjct: 506 SGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKI 565
Query: 601 AWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
W+ + PK +GG G KDL FN++LL K R T +L Q++++
Sbjct: 566 HWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKS 616
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 306 bits (785), Expect = 2e-83
Identities = 195/637 (30%), Positives = 320/637 (49%), Gaps = 35/637 (5%)
Query: 21 WKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEETGLS 80
W + G Y EKL R L W + + + E + ++ D E + L
Sbjct: 622 WNRGRSDSHGGYY--EKLHCCRQELAKWKRRTKTNTAEKIETLKYRV---DAAERDHTLP 676
Query: 81 QEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGL 140
+ + L D R E K+R+RW+ GD+N+ FF+++ ++ N I +
Sbjct: 677 HQTILR---LRQDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAI 733
Query: 141 W-VEGVWEEDPSRVKAAVESFFEAKFKSDV*D--RPRLEGVPFKTLSDSDNSVLIGPMDE 197
+G+ + E++F F + + G+ K ++ +L D+
Sbjct: 734 TDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQ 793
Query: 198 VEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIV 257
E++DAV+A G +++PG DGF F WD++ DV VR F+ N + I
Sbjct: 794 -EVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQIC 852
Query: 258 LIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSV 317
LIPK+ P+ ++++RPISL YK+ISK+L RL +G VI + Q AFV +N+ D+V
Sbjct: 853 LIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNV 912
Query: 318 VVLNEVIHEVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCL 374
+V +E++H +K +++ + K D KAYD V+W+FLE +M ++ F +W+ WIM C+
Sbjct: 913 LVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCV 972
Query: 375 RSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVG 434
S S VL+NGSP G+ RG+RQGDPL+P+LFLF AE L+ + + + + G+K+
Sbjct: 973 TSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKIT 1032
Query: 435 ADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLA-AIAIET 493
D L +S L FADD++F A+ QN+ L I + +E SG K+N+ KS + I T
Sbjct: 1033 KDC-LAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPT 1091
Query: 494 GVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGR 553
+ L + YLG+P ++ +E ++ K++ R W +S G+
Sbjct: 1092 MRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGK 1151
Query: 554 ICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKD 613
+I+++ ALP+ ++ F +P + N ++ F WG ++
Sbjct: 1152 EIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG------------------KEN 1193
Query: 614 VGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
G LG KDL FNR+LL K WR T Q+L ++ +
Sbjct: 1194 EGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYK 1230
>At1g24640 hypothetical protein
Length = 1270
Score = 303 bits (777), Expect = 2e-82
Identities = 195/646 (30%), Positives = 322/646 (49%), Gaps = 23/646 (3%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR +L + + TW + K + + ++L+ R L W K
Sbjct: 203 FRFDKRFLFKEDVKEAIIRTWS--RGKHGTNISVADRLRACRKSLSSWKKQ-------NN 253
Query: 61 EEVVQKINILDVKEEETGLSQEEVATRESLLF-DFWTVLRHHESLLCQKARSRWLAEGDQ 119
+ KIN L+ E+ + R S+L D R E+ QK+R +WL G++
Sbjct: 254 LNSLDKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNR 313
Query: 120 NSGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLEGV 178
NS +FH+ + R+ I L V G + + ++F FKS P
Sbjct: 314 NSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSS---NPSGFTD 370
Query: 179 PFKTL----SDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDV 234
F L S+ N L+G + EIK+AV++ +PGPDG + F + +W + V
Sbjct: 371 WFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQV 430
Query: 235 IKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLST 294
V++F+ G N + + LIPK P + + RPISL +YK+ISK++A RL
Sbjct: 431 TSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQP 490
Query: 295 VVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVK---RKKQPSIIFKVDYEKAYDTVDWS 351
+ +++ + Q AFV R + D+++V +E++H +K R + K D KAYD V+WS
Sbjct: 491 WLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWS 550
Query: 352 FLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFV 411
+L ++ + F KW++WIM C+ S + SVL+N P G ++RGLRQGDPL+PFLF+
Sbjct: 551 YLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLC 610
Query: 412 AEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCF 471
EGL L + +G++ ++ G V L FADD++FL +A+ + + L+ IL+ +
Sbjct: 611 TEGLTHLLNKAQWEGALEGIQF-SENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVY 669
Query: 472 ELVSGLKVNFHKSKLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWE 530
+G +N +KS + ++ + + L YLG+P S +
Sbjct: 670 GNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLH 729
Query: 531 PVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFL 590
+ +++ +L +W + +S GG+ L++SV A+P+ +S F++P + M F
Sbjct: 730 YLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFW 789
Query: 591 WGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWR 636
W + D ++I W W +C PKD GGLG +D+ FN++LL K WR
Sbjct: 790 WDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWR 835
>At3g45550 putative protein
Length = 851
Score = 303 bits (776), Expect = 2e-82
Identities = 164/468 (35%), Positives = 259/468 (55%), Gaps = 5/468 (1%)
Query: 188 NSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAW 247
NS L + EI +A+ G +K+PGPDG RF KQ WD++ DVIK V+ F+
Sbjct: 42 NSELTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHM 101
Query: 248 SRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAF 307
N + I +IPK+ +PQ L+++RPI+L +YKVISK + RL + ++ + Q AF
Sbjct: 102 KTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAF 161
Query: 308 VGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGRMNFCS 364
+ R + D+V++ +E++H +K +K+ S + K D KAYD V+W FLE M FC
Sbjct: 162 IPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCD 221
Query: 365 KWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVR 424
KWI WIM ++S SVL+NGSP G RG+RQGDPL+P+LF+ + L+ L +
Sbjct: 222 KWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKAS 281
Query: 425 LSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKS 484
+GV++G + ++ LQFADD++F +A ++N +LK + +E SG K+N KS
Sbjct: 282 SGDIRGVRIG-NGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKS 340
Query: 485 KLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALW 543
+ + + + LN YLG+P + + +I +++ R A W
Sbjct: 341 LITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASW 400
Query: 544 KQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWV 603
K +S G+ L++SV A+P+ +S F++P +V ++ +F W + + I WV
Sbjct: 401 SAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWV 460
Query: 604 KWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
W + K GGLG +DL FN +LL K WR +L+ +V++A
Sbjct: 461 AWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKA 508
>At2g11240 pseudogene
Length = 1044
Score = 298 bits (763), Expect = 6e-81
Identities = 185/621 (29%), Positives = 320/621 (50%), Gaps = 28/621 (4%)
Query: 27 KGWGSY---VLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEETGLSQEE 83
+ W Y +++EK+ R + W++A EE QK+ ++ +QE
Sbjct: 95 EAWNLYDTDIVEEKISRCRLEIVKWSRAKQQSSQKLIEENRQKLEEAMSSQDH---NQEL 151
Query: 84 VATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVE 143
++T + L + E Q++R WLA GD+NSG+FH+ + N + E
Sbjct: 152 LSTINTNLL---LAYKAEEEYWKQRSRQLWLALGDKNSGYFHAITRGRTVINKFSVIEKE 208
Query: 144 -GVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKD 202
GV E + + + + +F+ F ++ EG T+ ++ + + EIK
Sbjct: 209 DGVPEYEEAGILNVISEYFQKLFSAN-------EGARAATIKEAIKPFISPEQNPEEIKS 261
Query: 203 AVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKV 262
A ++ +K+PGPDGF+ F + W + +++ ++ F+ N + I LIPK+
Sbjct: 262 ACFSIHADKAPGPDGFSASFFQSNWMTVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKI 321
Query: 263 NSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNE 322
S + + ++RPI+L YK+ISKLL+ RL ++ ++I E Q AFV R D+V++ +E
Sbjct: 322 QSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHE 381
Query: 323 VIHEVK---RKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASV 379
+H +K +K+ + K + KAYD ++W F++ +M M F WISWI+ C+ + S
Sbjct: 382 ALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSY 441
Query: 380 SVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGL 439
S L+NGS G ERGLRQGDPL+PFLF+ +E L+GL + + G++V
Sbjct: 442 SFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNP- 500
Query: 440 EVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLA-AIAIETGVAHQ 498
V+ L FADDT+F + +++ + CIL+ +E SG +N KS + + + +
Sbjct: 501 RVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTE 560
Query: 499 FASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQ 558
L +++ YLG+P + ++ ++R R W + +S G+ +++
Sbjct: 561 AQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLK 620
Query: 559 SVLSALPLIFLSFFRIPACVVKVCNRI---MRDFLWGASDGGKRIAWVKWLDVCQPKDVG 615
SVL+++P +S F++ +V +C RI + F W +S K++ W+ W + + K G
Sbjct: 621 SVLASMPTYTMSCFKL---LVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEG 677
Query: 616 GLGIKDLDLFNRSLLGKWLWR 636
GLG KD+ FN +LL K WR
Sbjct: 678 GLGFKDITNFNDALLAKLSWR 698
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 295 bits (755), Expect = 5e-80
Identities = 177/559 (31%), Positives = 306/559 (54%), Gaps = 30/559 (5%)
Query: 99 RHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVEGVWEE--DPSRVKAA 156
R E Q +R +WL GD+N G+FH+T +R N++ + +G +E + ++ +
Sbjct: 271 RQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNL-SVIEDGSGQEFHEEEQIAST 329
Query: 157 VESFFEAKFK-SDV*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGP 215
+ S+F+ F S+ D ++ +S N LI +EIK+A+++ +K+PGP
Sbjct: 330 ISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGP 389
Query: 216 DGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPIS 275
DGF+ F +WD+++ DV + +R F+ S N + + LIPK+++P+ ++++RPI+
Sbjct: 390 DGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIA 449
Query: 276 LIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVK---RKKQ 332
L YK+++K+L RL + ++I Q AFV R + D+V++ +E++H ++ KK
Sbjct: 450 LCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKY 509
Query: 333 PSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFK 392
S+ K D KAYD + W+FL+ ++ R+ F KWI W+M C+ + S S L+NGSP G
Sbjct: 510 CSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVV 569
Query: 393 MERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVG---ADTGLEVSLLQFADD 449
RGLRQGDPL+P+LF+ E L+GL R ++ KGV VG A +V+ L FADD
Sbjct: 570 PSRGLRQGDPLSPYLFILCTEVLSGL----CRKAQEKGVMVGIRVARGSPQVNHLLFADD 625
Query: 450 TVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMT 509
T+F + +L IL+ +EL SG +N KS + + +T + L+ ++
Sbjct: 626 TMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAI-TFSSKTPQDIKRRVKLSLRIDN 684
Query: 510 IPFV--YLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLI 567
+ YLG+P + ++ ++R R W + +S G+ L+++VLS++P
Sbjct: 685 EGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSY 744
Query: 568 FLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLD---- 623
+ F++PA + K ++ F W + +++AWV W + P + GGLG ++++
Sbjct: 745 AMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIEAKLS 804
Query: 624 ---------LFNRSLLGKW 633
L +R LLGK+
Sbjct: 805 WRILKEPHSLLSRVLLGKY 823
>At3g25485 unknown protein
Length = 979
Score = 294 bits (753), Expect = 9e-80
Identities = 181/655 (27%), Positives = 325/655 (48%), Gaps = 43/655 (6%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVL---KEKLKGLRGRLKDWNKAVFGDLT 57
F+ +N + +V + WK + + + +KLK L+ +++ K G+L
Sbjct: 207 FKFINAIAEMQEFRPMVEAYWKTTEPVYMSTSTMFRFTKKLKALKPKIRQLAKEKMGNLV 266
Query: 58 TRREEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRH-HESLLCQKARSRWLAE 116
R +E + +EE + E+ + W +L E L QK++ W+
Sbjct: 267 KRTKEAHD--TLCQKQEENLKSPSPQAMIEETEAHEKWELLAEIEEKYLKQKSKLHWMQV 324
Query: 117 GDQNSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLE 176
GD+N+ FH +A V + FE ++
Sbjct: 325 GDKNNKTFH----------------------------RALVPNDFEGATLEEL-----QV 351
Query: 177 GVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIK 236
+PF+ ++ D S L+ P+ EIK ++ +KSPGPDGF F K W+++ + I
Sbjct: 352 LLPFRCTAE-DRSRLMEPVTGEEIKTVLFFMSSDKSPGPDGFTTEFYKATWEIIGAEFIV 410
Query: 237 AVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVV 296
AV+ F+ +G +G N++ + LIPK + + ++RPIS IYKVISKL+A RL ++
Sbjct: 411 AVKSFFEKGFLPKGVNSTILALIPKKFETKEMKDYRPISCCNVIYKVISKLIAKRLKEIL 470
Query: 297 GKVIDERQFAFVGNRNMLDSVVVLNEVIHEV-KRKKQPSIIFKVDYEKAYDTVDWSFLEY 355
+ I Q AFV +R ++ ++++ E++ + K K+D KA+D+V WSFLE
Sbjct: 471 PQFIAGNQSAFVKDRLLIQNLLLATEIVKDYHKESVSDRCAIKIDISKAFDSVQWSFLEN 530
Query: 356 MMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGL 415
++ +NF ++I WIM C+ +AS SV VNG G F RGLRQG L+P+LF+ + L
Sbjct: 531 VLHSLNFSQEFIHWIMLCITTASFSVQVNGELVGFFNSSRGLRQGCSLSPYLFVIAMDVL 590
Query: 416 NGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVS 475
+ + + KF G T + ++ L FADD + L + ++++ + + F S
Sbjct: 591 SKMLDRAAGFKKF-GYHPRCQT-IGLTHLTFADDLMVLSDGKVRSVEGIVSVFDEFAKKS 648
Query: 476 GLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKK 535
GLK++ KS + + V ++P YLG+P+ + + P++++
Sbjct: 649 GLKISMEKSTIYLAGSANMYRREIEERFKFAVGSLPVRYLGLPLVTKRFSSADYRPLVEQ 708
Query: 536 MRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASD 595
++ ++ W + +S+ GR+ LI SV+ ++ +++ FR+P ++ +++ FLW +
Sbjct: 709 IKRKIGTWTARYLSYAGRLNLISSVIWSICNFWIAAFRLPRECIREIDKLCSAFLWSGPE 768
Query: 596 GGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
+ A V W +C+PK GGLG++ L N K +WRW ++ +LW ++++
Sbjct: 769 LNSKRAKVNWEAICKPKREGGLGLRSLKEANDVSCLKLIWRWVSRGDSLWRKLLK 823
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 285 bits (728), Expect = 7e-77
Identities = 191/662 (28%), Positives = 317/662 (47%), Gaps = 27/662 (4%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKD---MKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLT 57
F+ +N P+ VV S W + V Y +KLK L+ L++ K GDL
Sbjct: 548 FKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLGDLP 607
Query: 58 TRREEVVQKINILDVKEEETGLSQ--EEVATRESLLFDFWTVLRH-HESLLCQKARSRWL 114
R E +IL +++ T L+ +E E + WT L E L QK++ W+
Sbjct: 608 KRTREA----HILLCEKQATTLANPSQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWM 663
Query: 115 AEGDQNSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSR-VKAAVESFFEAKFKSDV*DRP 173
GD N+ +FH ++ NSI + S +K E FF D
Sbjct: 664 NVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFH 723
Query: 174 RLEGVPFKTL-----SDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWD 228
+ + L S +D ++L + EI+ ++A NKSPGPDG+ F K W
Sbjct: 724 GISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWS 783
Query: 229 VLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLL 288
+ D I A++ F+ +G +G NA+ + LIPK + + ++RPIS +YKVISK+L
Sbjct: 784 LTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKIL 843
Query: 289 ATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEV-KRKKQPSIIFKVDYEKAYDT 347
A RL ++ I + Q AFV R ++++V++ E++ + K P K+D KA+D+
Sbjct: 844 ANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDS 903
Query: 348 VDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFL 407
V W FL + +NF + WI C+ +A+ SV VNG G F RGLRQG L+P+L
Sbjct: 904 VQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYL 963
Query: 408 FLFVAEGLNGLFQNSVRLSKF----KGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVS 463
F+ L+ + + K K+G ++ L FADD + + ++
Sbjct: 964 FVICMNVLSHMIDEAAVHRNIGYHPKCEKIG------LTHLCFADDLMVFVDGHQWSIEG 1017
Query: 464 LKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARA 523
+ + + F SGL+++ KS + + Q S +P YLG+P+ +
Sbjct: 1018 VINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQ 1077
Query: 524 SCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCN 583
+ P+I+ ++ +++ W + +S+ GR+ L+ SV+ ++ ++S +R+PA ++
Sbjct: 1078 MTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIE 1137
Query: 584 RIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQA 643
++ FLW + A + W +CQPK GGLGIK L N+ K +WR + + +
Sbjct: 1138 KLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPS 1197
Query: 644 LW 645
LW
Sbjct: 1198 LW 1199
>At1g25430 hypothetical protein
Length = 1213
Score = 284 bits (726), Expect = 1e-76
Identities = 197/662 (29%), Positives = 324/662 (48%), Gaps = 32/662 (4%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
F+ N L + +V W + V G + + +KLK L+ +KD+++ + +L R
Sbjct: 249 FKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRT 308
Query: 61 EEV------VQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRH-HESLLCQKARSRW 113
+E Q + D E A R+ W +L ES QK+R W
Sbjct: 309 KEAHDFLIGCQDRTLADPTPINASFELE--AERK------WHILTAAEESFFRQKSRISW 360
Query: 114 LAEGDQNSGFFHSTINWKRRTNSIVGLWV-EGVWEEDPSRVKAAVESFFEAKFKSDV*DR 172
AEGD N+ +FH + + +NSI L+ G + + S+F + +V D
Sbjct: 361 FAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEV-DP 419
Query: 173 PRLEGVPFKTL-----SDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFW 227
+E L S + L +I+ A+++ NKS GPDGF F W
Sbjct: 420 YLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSW 479
Query: 228 DVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKL 287
++ +V A++EF+ G + NA+ IVLIPK+ +P ++FRPIS + +YKVI++L
Sbjct: 480 SIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARL 539
Query: 288 LATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKK-QPSIIFKVDYEKAYD 346
L RL ++ VI Q AF+ R++ ++V++ +++H P + KVD +KA+D
Sbjct: 540 LTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFD 599
Query: 347 TVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPF 406
+V W F+ + + K+I+WI C+ + + +V +NG G FK +GLRQGDPL+P+
Sbjct: 600 SVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPY 659
Query: 407 LFLFVAEGLNGLFQNSVRLSKFKGVKV---GADTGLEVSLLQFADDTVFLGEATIQNLVS 463
LF+ E + L S+++ + + L +S L FADD + + +L
Sbjct: 660 LFVLAMEAFSNLLH-----SRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHG 714
Query: 464 LKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARA 523
+ L F SGLKVN KS L + ++ A++ + T+P YLG+P+ R
Sbjct: 715 ICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANAAY-GFPIGTLPIRYLGLPLMNRK 773
Query: 524 SCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCN 583
+ +EP+++K+ R W K +SF GRI LI SV+ ++S F +P +K
Sbjct: 774 LRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIE 833
Query: 584 RIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQA 643
+ FLW + + V W +C PK GGLG++ L +N++L + +WR K +
Sbjct: 834 SLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDS 893
Query: 644 LW 645
LW
Sbjct: 894 LW 895
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 280 bits (715), Expect = 2e-75
Identities = 186/650 (28%), Positives = 314/650 (47%), Gaps = 28/650 (4%)
Query: 9 DDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKIN 68
+DP+ S+W + S +L R+ KA+ G +I
Sbjct: 211 EDPQCAASTLSSWIGNGISDVSSSML---------RMVKCRKAISGWKKNSDFNAQNRIL 261
Query: 69 ILDVKEEETGLSQEEVATRESLL-FDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHST 127
L + +E Q +R S++ R ES K++ +WL GD+NS FF +
Sbjct: 262 RLRSELDEEKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKFFQAM 321
Query: 128 INWKRRTNSIVGLWVEGVWEEDPSRVKAAVES-FFEAKFKSDV*DRPRLEGVPFKT-LSD 185
+ R NS+ L E E +R K + S +FE F S + FKT +S+
Sbjct: 322 VKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALDGFKTRVSE 381
Query: 186 SDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRG 245
N L + E+EI AV++ +P + + +G + F+ G
Sbjct: 382 EMNQELTQAVTELEIHSAVFSINVESAP-----------EKLECCQGSDYIEILGFFETG 430
Query: 246 AWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQF 305
+ N + + LIPK +PQ +++ RPISL +YK+ISK+L+ +L + ++ Q
Sbjct: 431 VLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQS 490
Query: 306 AFVGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGRMNF 362
AF R + D++++ +E++H ++ + S ++FK D KAYD V+WSFL+ ++ + F
Sbjct: 491 AFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGF 550
Query: 363 CSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNS 422
KWISWIMGC+ S + SVL+NG G ERG+RQGDP++PFLF+ E L + Q +
Sbjct: 551 NDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQA 610
Query: 423 VRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFH 482
K G++ +G V+ L F DDT + AT + + L + +SG +N
Sbjct: 611 ENSKKVSGIQFNG-SGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVE 669
Query: 483 KSKLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLA 541
KS + + ++ + + YLG+P S + + +K+++ L+
Sbjct: 670 KSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLS 729
Query: 542 LWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIA 601
W K +S GG+ L++S+ ALP+ ++ FR+P + +M DF W + + +I
Sbjct: 730 GWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIH 789
Query: 602 WVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
W+ + PK +GG G KDL FN++LL K WR + +++ Q+ ++
Sbjct: 790 WIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKS 839
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,097,399
Number of Sequences: 26719
Number of extensions: 655593
Number of successful extensions: 2190
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1890
Number of HSP's gapped (non-prelim): 130
length of query: 651
length of database: 11,318,596
effective HSP length: 106
effective length of query: 545
effective length of database: 8,486,382
effective search space: 4625078190
effective search space used: 4625078190
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0060.14