BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058b.2
(1371 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16000 putative retroelement pol polyprotein 804 0.0
At2g13940 putative retroelement pol polyprotein 799 0.0
At2g23330 putative retroelement pol polyprotein 782 0.0
At2g20460 putative retroelement pol polyprotein 780 0.0
At1g70010 hypothetical protein 758 0.0
At1g26990 polyprotein, putative 726 0.0
At1g57640 725 0.0
At1g31210 putative reverse transcriptase 716 0.0
At4g17450 retrotransposon like protein 708 0.0
At4g14460 retrovirus-related like polyprotein 695 0.0
At2g16670 putative retroelement pol polyprotein 693 0.0
At4g02960 putative polyprotein of LTR transposon 678 0.0
At3g25450 hypothetical protein 554 e-157
At2g13930 putative retroelement pol polyprotein 550 e-156
At4g10990 putative retrotransposon polyprotein 526 e-149
At1g36620 hypothetical protein 499 e-141
At4g22040 LTR retrotransposon like protein 497 e-140
At2g21460 putative retroelement pol polyprotein 484 e-136
At4g23160 putative protein 476 e-134
At2g24660 putative retroelement pol polyprotein 475 e-134
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 804 bits (2076), Expect = 0.0
Identities = 488/1409 (34%), Positives = 755/1409 (52%), Gaps = 89/1409 (6%)
Query: 15 DGENYVEWKYLVAVSLGGMGKDEHLTG--SCPTNATAAAK-WKMDDKRILALLVNSVDKR 71
D NY +W + +SL K + G S P + + W + + + L+NSV +
Sbjct: 80 DETNYGDWSVAMLISLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNSVSPQ 139
Query: 72 TQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAE 131
I ++W L F NL R Y L Q I +Q L +Y+ K +
Sbjct: 140 IYRSILRMNDASDIWRDLNSRFN-VTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWD 198
Query: 132 ELTSLLS----CKTKEDMLAQQKKLIA--LSWLSGLDQEFEVVRSQILSSKQVDTLTDVF 185
+L S + C + M QQK A + +L+GL++ + +VR QI++ K + +L +V+
Sbjct: 199 QLDSTEALDEPCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVY 258
Query: 186 SRVMQSSFEKPKPAPDVDTSDRSALAAHSGFRGG---RGGGRGGRGGARGRGGRFGQIQC 242
+ Q + ++ S + +A + F+ + G G+ C
Sbjct: 259 HILDQDNSQQ---------SFSNVVAPPAAFQVSEITQSPSMDPTVCYVQNGPNKGRPIC 309
Query: 243 YSCGELGHYKN*CPNSQQHQQHFQQSA--------PNRFANNVSQSDVIQTQPEKRTVVM 294
+GH C F P A NV++S + T E +
Sbjct: 310 SFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVNTSLESMVGNL 369
Query: 295 SDDEFARYTQFQISQQSASPSSS--TATFVQTGNPTVCLSST----------------SR 336
S ++ ++ SQ +P S+ TA+ Q+ N +C S + S
Sbjct: 370 SKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIGILTVARHTLSSA 429
Query: 337 RWIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLY 396
W+IDSGAT+H++ D +F S +S + S+V L G V++ G G + + +VL+
Sbjct: 430 TWVIDSGATHHVSHDRSLFSSLDTSVL-SAVNLPTGPTVKISGVGTLKLNDDILLKNVLF 488
Query: 397 LPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKAS 456
+P+F NL+SIS +T + V F +SC QDL R++G+GR LYLLD G S
Sbjct: 489 IPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGDQSIS 548
Query: 457 TAYRTSSVSPFQLHCRLGHPSLGVLRKLCPQLESLSNFS-----CESCQFAKHHRSVYLP 511
+ V H RLGH SL L + L + + + C C AK R + P
Sbjct: 549 V---NAVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQ-RKLSFP 604
Query: 512 RLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCN 571
NK +F ++H DVWGP V + GYKYF+T VDD+SRATW+YL+K++SE+ T+F
Sbjct: 605 TSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPA 664
Query: 572 FCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRH 631
F ++ Q+ + +RSDNA E F +F + G++ SC TP+QN V ERK++H
Sbjct: 665 FIQQVENQYKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQNSVVERKHQH 721
Query: 632 LMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPSCSLFPLPPKV 691
++ VA+ALMFQ +VP W D VLTA +LINR PS +L PY +L + ++ +
Sbjct: 722 ILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYE-QLRT 780
Query: 692 FGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFEDCSF 751
FGC C+ Q K P+S C+FLGY KGY+ +S +V F E+
Sbjct: 781 FGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEV-- 838
Query: 752 SGWLPSSFPVCESEDTFLTYITTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPD--TQSL 809
FP+ ++ + + +P ++G S + S PP +Q +
Sbjct: 839 -------FPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQISSQRV 891
Query: 810 PSIPLVSSDPHDNLDLPIALRKGKRTCSYPISSYVTSNKLSPASKSFVAALDSVSVPKSL 869
P +D H N + YPISS ++ +K+SP+ ++ + + +P +
Sbjct: 892 RKPPAHLNDYHCNTM--------QSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNY 943
Query: 870 SDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKAR 929
++A W +A++ E+ A+E TW++ LP GK+ VGCKWV+T K DG+L R KAR
Sbjct: 944 AEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKAR 1003
Query: 930 LVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVY 989
LVAKGY Q G+DYTDTFSPVAK++++++L+ ++A+ W L QLDV NAFL+G+L++E++
Sbjct: 1004 LVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIF 1063
Query: 990 MEQPPGFVAQG----ECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVF 1045
M+ P G+ + V RLK+S+YGLKQ+ R WF +FS ++ G +++ DHT+F
Sbjct: 1064 MKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLF 1123
Query: 1046 FKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKN 1105
K + ++++VYVDDIVI + L L +F+ +DLG LKYFLG+EV +
Sbjct: 1124 LKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTA 1183
Query: 1106 GIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTA-EGVPFSDPQQYRRLVGKLNYLT 1164
GI I QRKY L++L TG++ KP PM P +K+ +G D +QYRR+VGKL YLT
Sbjct: 1184 GISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLT 1243
Query: 1165 VTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDAD 1224
+TRPDI F V+ + QF S+P H A R+++Y+K G+G+ Y + ++ F+D+D
Sbjct: 1244 ITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSD 1303
Query: 1225 WAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC--MWVGQILS 1282
WA R+STT + +F+G +LISW+SKKQ+ V+RSSAEAEYRA+A TC +W+ +L
Sbjct: 1304 WASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLV 1363
Query: 1283 EMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGD 1342
+ P+ L+ D+ AA++I++NPVFHERTKHI++DCH +RE+L + +VRT D
Sbjct: 1364 SLQASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTED 1422
Query: 1343 QLADVFTKALNGVRNDFICNKLGMINIYA 1371
Q+AD+ TK L + + + +K+ ++NI++
Sbjct: 1423 QVADILTKPLFPYQFEHLKSKMSILNIFS 1451
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 799 bits (2064), Expect = 0.0
Identities = 504/1474 (34%), Positives = 780/1474 (52%), Gaps = 129/1474 (8%)
Query: 7 LTDIKLDGDGENYVEWKYLVAVSLGGMGKDEHLTGSCPT---NATAAAKWKMDDKRILAL 63
++ ++L+GD NY +W + +L K + G+ P N W + I+
Sbjct: 44 ISSVELNGD--NYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNYENWTAVNSMIVGW 101
Query: 64 LVNSVDKRTQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYF 123
+ S++ + ++ +T LW+ L+ F + + RI+ + + +QD + +++Y+
Sbjct: 102 IRTSIEPKVKATVTFISDAHLLWKDLKQRFSVGNKV-RIHQIRAQLSSCRQDGQAVIEYY 160
Query: 124 LEFKKYAEELT----------SLLSCKTKEDMLAQQKKLIALSWLSGLDQE-FEVVRSQI 172
EE L C + ++++ ++ GLD+ F + + +
Sbjct: 161 GRLSNLWEEYNIYKPVTVCTCGLCRCGATSEPTKEREEEKIHQFVLGLDESRFGGLCATL 220
Query: 173 LSSKQVDTLTDVFSRVMQSS-------FEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRG 225
++ + +L +++SRV++ + K + R L HS R R
Sbjct: 221 INMDPLPSLGEIYSRVIREEQRLASVHVREQKEEAVGFLARREQLDHHS--RVDASSSRS 278
Query: 226 GR-GGARGRGGRFGQIQCYSCGELGHYKN*CPNSQQHQQHFQQSAPNRFANNVSQSDVIQ 284
GG+R G++ C +CG GH K C + + R +N +
Sbjct: 279 EHTGGSRSNSIIKGRVTCSNCGRTGHEKKECWQIVGFPDWWSERNGGRGSNGRGRGGRGS 338
Query: 285 TQPEKRTVVMSDD----------EFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSST 334
+ VM+ EF +SQ S+S +T + N + LS
Sbjct: 339 NGGRGQGQVMAAHATSSNSSVFPEFTEEHMRVLSQLVKEKSNSGST---SNNNSDRLSGK 395
Query: 335 SRRW--IIDSGATNHMTGDSGIFLSFSSSSIH---SSVTLADGSIVRVKGSGCTTPVSTL 389
++ I+DSGA++HMTG LS ++ + V ADGS G T +T+
Sbjct: 396 TKLGDIILDSGASHHMTGT----LSSLTNVVPVPPCPVGFADGSKAFALSVGVLTLSNTV 451
Query: 390 PMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLL- 448
+++VL++P C L+S+SK+ + +C TF C QD S++ +IG G E G+Y L
Sbjct: 452 SLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYLT 511
Query: 449 DEGVSKASTAYRTSSVSPFQLHCRLGHPSLGVLRKL---CPQLESLSNFSCESCQFAKHH 505
D +K TA S + + H RLGHPS VL L ++++ SC+ C AK
Sbjct: 512 DVTPAKIHTANVDSDQALW--HQRLGHPSFSVLSSLPLFSKTSSTVTSHSCDVCFRAKQT 569
Query: 506 RSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSEL 565
R V+ +NK F ++H DVWGP V + G YF+T VDDYSRA W YL+ +SE+
Sbjct: 570 REVFPESINKTE-ECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEV 628
Query: 566 FTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVA 625
+ NF QF + ++RSDN E+ ++ ++G+IHQ+SC+ TPQQNG
Sbjct: 629 RQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMC--LSSYFRENGIIHQTSCVGTPQQNGRV 686
Query: 626 ERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPSCSLF 685
ERK+RH++ VA+AL+FQ +P FW +++LTAAYLINR PS++L+G PY VL S ++
Sbjct: 687 ERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKPVY 746
Query: 686 PLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTF 745
+VFG C+V V K +S C+F+GY +KG++ + +LVS DV F
Sbjct: 747 S-QLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIF 805
Query: 746 FED------CSFSGWLPSSFPVCESED-----------------TFLTYITTSPAPQTTT 782
E+ + S +S P +D T TT T+
Sbjct: 806 REEVFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVVLDTS 865
Query: 783 GTGFQFYEKTY---SRRPKS--SAPPPDTQSLPSIPLVSSDPHDNLDLPIALRKGKRTCS 837
+ + + + P S S P + + P+ P+V P RK KR
Sbjct: 866 VSDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSKRATH 925
Query: 838 YP--------------------------------------ISSYVTSNKLSPASKSFVAA 859
P ++ YV+ S + ++++AA
Sbjct: 926 PPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRAYLAA 985
Query: 860 LDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNP 919
+ PK +A+ W AM E+ ALE N TWD+V LP GK +G +WV+ TK N
Sbjct: 986 ITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNS 1045
Query: 920 DGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAF 979
DG++ R KARLV +G Q G DY +TF+PV ++++VR L+ A N W ++Q+DV NAF
Sbjct: 1046 DGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAF 1105
Query: 980 LHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSE 1039
LHGDL++EVYM+ PPGF KVCRL+KSLYGLKQ+PR WF + SD ++ FG +S
Sbjct: 1106 LHGDLEEEVYMKLPPGF-RHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSY 1164
Query: 1040 SDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIE 1099
D+++F N + +++YVDD++I G+D + K +L F KDLG LKYFLGIE
Sbjct: 1165 EDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIE 1224
Query: 1100 VVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAEGVP-FSDPQQYRRLVG 1158
V GI +SQRKY LD++A++G +GS+P TP+E L ++ P SDP+ YRRLVG
Sbjct: 1225 VSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVG 1284
Query: 1159 KLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVE 1218
+L YL TRP++++ V V++QFM +P +AH++A +R+V+YLK +PG+GI+ + +E
Sbjct: 1285 RLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLE 1344
Query: 1219 AFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAM--AQTTCMW 1276
+ D+DW P+ R+S + Y V LGG+ ISWK+KKQ+ V+ SSAEAEYRAM A W
Sbjct: 1345 VYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKW 1404
Query: 1277 VGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTS 1336
+ ++L E+GIE+ +P +L+CD++AA+HI++NPVFHERTKHIE DCH +R+ ++ +I+T
Sbjct: 1405 LRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQ 1464
Query: 1337 YVRTGDQLADVFTKALNGVRNDFICNKLGMINIY 1370
+VRT +QLADVFTKAL + ++ +KLG+ N++
Sbjct: 1465 HVRTTEQLADVFTKALGRNQFLYLMSKLGVQNLH 1498
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 782 bits (2019), Expect = 0.0
Identities = 512/1485 (34%), Positives = 753/1485 (50%), Gaps = 174/1485 (11%)
Query: 18 NYVEWKYLVAVSLGGMGKDEHLTGSCPTNAT--AAAKWKMDDKRILALLVNSVDKRTQSV 75
NY EW + L K + GS P A + W + I+ + S+D +S
Sbjct: 43 NYAEWSEELQNFLRAKQKLGFIDGSIPKPAADPELSLWIAINSMIVGWIRTSIDPTIRST 102
Query: 76 ITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAEELTS 135
+ +LWE L+ F + + + L I QD + ++ Y+ K EEL +
Sbjct: 103 VGFVSEASQLWENLRRRFSVGNGVRKTL-LKDEIAACTQDGQPVLAYYGRLIKLWEELQN 161
Query: 136 LLS-----CKTKEDMLAQQKKLIALSWLSGLDQEFEVVRSQILSSKQVDTLTDVFSRVMQ 190
S C+ D+ +++ +L GLD F +RS I + + L V+SRV++
Sbjct: 162 YKSGRECKCEAASDIEKEREDDRVHKFLLGLDSRFSSIRSSITDIEPLPDLYQVYSRVVR 221
Query: 191 SSFEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRGGRFGQIQCYSCGELGH 250
+ + D A+ G + R + C C GH
Sbjct: 222 EE-QNLNASRTKDVVKTEAI------------GFSVQSSTTPRFRDKSTLFCTHCNRKGH 268
Query: 251 YKN*C------------PNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKR-------- 290
C N Q++Q + N ++ + + P R
Sbjct: 269 EVTQCFLVHGYPDWWLEQNPQENQPSTRGRGSNGRGSSSGRGGNRSSAPTTRGRGRANNA 328
Query: 291 ---TVVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATNH 347
+S D + Q Q+ PSSS+ +GN CL+ +ID+GA++H
Sbjct: 329 QAAAPTVSGDGNDQIAQLISLLQAQRPSSSSERL--SGN--TCLTDG----VIDTGASHH 380
Query: 348 MTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCNLLSI 407
MTGD I + + S VT DG + G + + VL++P F C L+S+
Sbjct: 381 MTGDCSILVDVFDIT-PSPVTKPDGKASQATKCGTLLLHDSYKLHDVLFVPDFDCTLISV 439
Query: 408 SKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLY----LLDEGVSKASTAYRTSS 463
SK+ + F C QD + +IG G E +G+Y +L V KAS+ + +
Sbjct: 440 SKLLKQTSSIAIFTDTFCFLQDRFLRTLIGAGEEREGVYYFTGVLAPRVHKASSDF---A 496
Query: 464 VSPFQLHCRLGHPSLGVLRKLCPQLESLSNF----SCESCQFAKHHRSVYLPRLNKRAMS 519
+S H RLGHPS VL L S F SC++C +K R V+ P N + M
Sbjct: 497 ISGDLWHRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVF-PISNNKTME 555
Query: 520 LFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQ 579
F ++H DVWGP S G YF+T VDDYSR+ W YLM S++E+ + NFCA Q
Sbjct: 556 CFSLIHGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQ 615
Query: 580 FNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQAL 639
F + R+DN E+ + HG++HQ+SC+ TPQQNG ERK+RH++ VA+A
Sbjct: 616 FGKQVKAFRTDNGTEFMC--LTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARAC 673
Query: 640 MFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLF---PSCSLFPLPPKVFGCTC 696
+FQ +P FW +++LTA +LINR PS VL G PY +LF PS + + FGC C
Sbjct: 674 LFQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDML----RSFGCLC 729
Query: 697 FVLDVRPQ-VTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFED------- 748
+ +RP+ K +S KCVF+GY +K +R + G+ S DV F ED
Sbjct: 730 YA-HIRPRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATA 788
Query: 749 CSFSGWLPSSFPVCESEDTFL---TYITTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPD 805
+ LP P ++D FL T + ++ +++ + Q + + P+S P
Sbjct: 789 TQSNVPLPPPTPPMVNDDWFLPISTQVDSTNVDSSSSSSPAQ--SGSIDQPPRSIDQSPS 846
Query: 806 TQSLPSIP------LVSSDPHDNLD---------------------------LPIALRKG 832
T + P +P + SS P ++D LP L KG
Sbjct: 847 TSTNP-VPEEIGSIVPSSSPSRSIDRSTSDLSASDTTELLSTGESSTPSSPGLPELLGKG 905
Query: 833 --------------------KRTCSYPISS----------------YVTSNKLSPASK-- 854
K+T S+ I S V+ L P S
Sbjct: 906 CREKKKSVLLKDFVTNTTSKKKTASHNIHSPSQVLPSGLPTSLSADSVSGKTLYPLSDFL 965
Query: 855 ----------SFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGK 904
+F+AA+ + PK DA+ W +AM +E+ ALE N TWD+ LP GK
Sbjct: 966 TNSGYSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGK 1025
Query: 905 QVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAA 964
+ + KWVY K N DG+L R KARLV G Q GVD+ +TF+PVAKL++VR ++++AA
Sbjct: 1026 KAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAA 1085
Query: 965 TNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFG 1024
W + Q+DV NAFLHGDL++EVYM PPGF + KVCRL+KSLYGLKQ+PR WF
Sbjct: 1086 AKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKC-SDPSKVCRLRKSLYGLKQAPRCWFS 1144
Query: 1025 RFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKF 1084
+ S + G +S D+++F + I ++VYVDD+++ G++ + I K+ L F
Sbjct: 1145 KLSTALRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCF 1204
Query: 1085 QTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTA-E 1143
KDLG LKYFLG+EV +G +SQRKY LD++ ETGL+G KP P+ KL +
Sbjct: 1205 HMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASIT 1264
Query: 1144 GVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAP 1203
G F++P+QYRRLVG+ YLT+TRPD+++ V ++SQFM +P AHWEA +R+V+YLK +P
Sbjct: 1265 GPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSP 1324
Query: 1204 GRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAE 1263
+GI R + + A+ D+D+ P+ R+S + Y V+LG + ISWK+KKQ+ V+ SSAE
Sbjct: 1325 AQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAE 1384
Query: 1264 AEYRAMAQT--TCMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDC 1321
AEYRAMA T W+ +L ++G+ SPMKL CD++AA+HI++NPVFHERTKHIE DC
Sbjct: 1385 AEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDC 1444
Query: 1322 HFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGM 1366
H +R+ + LI+T ++ T DQ+AD+ TK+L + + + LG+
Sbjct: 1445 HKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTFERLLSTLGV 1489
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 780 bits (2014), Expect = 0.0
Identities = 494/1421 (34%), Positives = 743/1421 (51%), Gaps = 112/1421 (7%)
Query: 15 DGENYVEWKYLVAVSLGGMGKDEHLTGSCPTNATAAAK---WKMDDKRILALLVNSVDKR 71
D Y +W + +SL K + GS P + W + + + L+NSV +
Sbjct: 84 DETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSVSPQ 143
Query: 72 TQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAE 131
I ++W L F NL R Y L Q I +Q L +Y+ K +
Sbjct: 144 IYRSILRLNDATDIWRDLFDRFNLT-NLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWD 202
Query: 132 ELTSL------LSCKTKEDMLAQQKKLIALSWLSGLDQEFEVVRSQILSSKQVDTLTDVF 185
+L S +C + + +K + +L+GL++ + +VR QI++ K + +L +V+
Sbjct: 203 QLDSTEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKKALPSLAEVY 262
Query: 186 SRVMQSSFEK-------PKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRGGRFG 238
+ Q + +K P A V S + + G + G
Sbjct: 263 HILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQSGPNK-------------G 309
Query: 239 QIQCYSCGELGHYKN*CPNSQQHQQHF--------QQSAPNRFANNVSQS-DVIQTQPEK 289
+ C C +GH C F + P A V+ S D + Q E
Sbjct: 310 RPTCSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQLET 369
Query: 290 RTVVMSDDE-------FARYTQFQI-------SQQSASPSSSTATFVQTGNP-TVCL--- 331
S D+ F+ Q QI SQ AS S S A +P T C
Sbjct: 370 LAGNFSPDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAPSGILFSPSTYCFIGI 429
Query: 332 ------SSTSRRWIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTP 385
S +S W+IDSGAT+H++ D +F + +SI S V L G VR+ G G
Sbjct: 430 LAVSHNSLSSDTWVIDSGATHHVSHDRKLFQTL-DTSIVSFVNLPTGPNVRISGVGTVLI 488
Query: 386 VSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGL 445
+ + +VL++P+F NL+SIS +T L V F P C QDL+ +G G+ L
Sbjct: 489 NKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNL 548
Query: 446 YLLDEGVSKASTAYRTSSVSPFQLHCRLGHPSLGVLRKLCPQL-----ESLSNFSCESCQ 500
Y+LD S A + VS + H RLGHPS L L L ++ + C C
Sbjct: 549 YVLDT-QSPAISVNAVVDVSVW--HKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCH 605
Query: 501 FAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMK 560
AK + + P N S F ++H DVWGP V + GYKYF+T VDD+SRATW+YL+K
Sbjct: 606 LAK-QKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLK 664
Query: 561 SRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQ 620
S+S++ T+F F + Q++ + +RSDNAKE F F G++ SC TP+
Sbjct: 665 SKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKE---LAFTEFYKAKGIVSFHSCPETPE 721
Query: 621 QNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVL-- 678
QN V ERK++H++ VA+ALMFQ + +W D VLTA +LINR PS +L+ P+ VL
Sbjct: 722 QNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTG 781
Query: 679 -FPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRY 737
P S K FGC C+ Q K P+S CVFLGY KGY+
Sbjct: 782 KLPDYSQL----KTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVV 837
Query: 738 LVSADVTFFEDCSFSGWLPSSFPVCESEDTFLTYITT-SPAPQTTTGTGFQFYEKTYSRR 796
+S +V F E+ FP+ S+ + T +P ++G + +
Sbjct: 838 HISRNVEFHEEL---------FPLASSQQSATTASDVFTPMDPLSSGNSITSHLPSPQIS 888
Query: 797 PKSSAPPPDTQSLPSIPLVSSDPHDNLDLPIALRKGKRTCSYPISSYVTSNKLSPASKSF 856
P + + + P D H + S+PISS ++ +++SP+ +
Sbjct: 889 PSTQI---SKRRITKFPAHLQDYHCYF--------VNKDDSHPISSSLSYSQISPSHMLY 937
Query: 857 VAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTK 916
+ + + +P+S +A W A+++E+ A+E TW++ LP GK+ VGCKWV+T K
Sbjct: 938 INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVK 997
Query: 917 VNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVK 976
+ DGSL R KAR+VAKGY Q G+DYT+TFSPVAK+++V++L+ ++A+ W L QLD+
Sbjct: 998 FHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDIS 1057
Query: 977 NAFLHGDLQDEVYMEQPPGFV-AQGEC---GKVCRLKKSLYGLKQSPRSWFGRFSDVVME 1032
NAFL+GDL++ +YM+ P G+ +G VCRLKKS+YGLKQ+ R WF +FS+ ++
Sbjct: 1058 NAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLA 1117
Query: 1033 FGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGIL 1092
G + DHT+F + I+L+VYVDDIVI + + +L L+ F+ ++LG L
Sbjct: 1118 LGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPL 1177
Query: 1093 KYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTA-EGVPFSDPQ 1151
KYFLG+EV + GI +SQRKY L++L ++ KP PM P ++L+ +G+ D +
Sbjct: 1178 KYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKE 1237
Query: 1152 QYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRD 1211
YRRLVGKL YLT+TRPDI F V+ + QF S+P AH A+ ++++Y+K G+G+ Y
Sbjct: 1238 MYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSA 1297
Query: 1212 HGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQ 1271
+ ++ ++DADW P R+STTG+ +F+G +LISW+SKKQ V+RSSAEAEYRA+A
Sbjct: 1298 EDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALAL 1357
Query: 1272 TTC--MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQ 1329
+C W+ +L + + P+ L+ D+ AA++I++NPVFHERTKHIE+DCH +REKL
Sbjct: 1358 ASCEMAWLSTLLLALRVHSGVPI-LYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLD 1416
Query: 1330 QNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGMINIY 1370
+ +V+T DQ+AD+ TK L + + +K+ + NI+
Sbjct: 1417 NGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQNIF 1457
>At1g70010 hypothetical protein
Length = 1315
Score = 758 bits (1956), Expect = 0.0
Identities = 474/1363 (34%), Positives = 734/1363 (53%), Gaps = 126/1363 (9%)
Query: 53 WKMDDKRILALLVNSVDKRTQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRP 112
W+ + + + L+NSV K + I + T +W+ L F K+ +L R+Y L Q I
Sbjct: 31 WRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAIWKDLYTRFHKS-SLPRLYKLRQQIHSL 89
Query: 113 KQDKRKLMDYFLEFKKYAEELTSLLSC-KTKEDMLAQQKKLIALSWLSGLDQEFEVVRSQ 171
+Q L Y + EELTSL + +T ED+L +++ + +L GL+ ++ VRSQ
Sbjct: 90 RQGNLDLSSYHTRTQTLWEELTSLQAVPRTVEDLLIERETNRVIDFLMGLNDCYDTVRSQ 149
Query: 172 ILSSKQVDTLTDVFSRVMQSSFEKPKPAPDVDTSDRSA-LAAHSGFRGGRGGGRGGRGGA 230
IL K + +L++VF+ + D D + RSA ++ G +
Sbjct: 150 ILMKKTLPSLSEVFNMI------------DQDETQRSARISTTPGMTSSVFPVSNQSSQS 197
Query: 231 RGRGGRFGQIQ---CYSCGELGHYKN*C------PNSQQHQQHFQQSAPNRFANNVSQSD 281
G + + + C C GH ++ C P S + +Q F + P+ AN S+
Sbjct: 198 ALNGDTYQKKERPVCSYCSRPGHVEDTCYKKHGYPTSFKSKQKFVK--PSISANAAIGSE 255
Query: 282 VIQTQPEKRTVVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRRWIID 341
+ T ++ + + F +S + PS+ P V S S
Sbjct: 256 EVVNNTSVSTGDLTTSQIQQLVSF-LSSKLQPPSTPV-------QPEVHSISVS------ 301
Query: 342 SGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFP 401
S S S+V GS+ + L ++ VL++PQF
Sbjct: 302 -----------------SDPSSSSTVCPISGSVHLGRH---------LILNDVLFIPQFK 335
Query: 402 CNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLD-EGVSKAST--A 458
NLLS+S +T+S+ C + F SCV QD + + ++G G++ LY++D + +S T +
Sbjct: 336 FNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIVDLDSLSHPGTDSS 395
Query: 459 YRTSSVSPFQL-HCRLGHPSLGVLRKLC-----PQLESLSNFSCESCQFAKHHRSVYLPR 512
+SV+ L H RLGHPS+ L+ + P+ ++ ++F C C +K ++
Sbjct: 396 ITVASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSH 455
Query: 513 LNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNF 572
NK + F ++H D WGP V + GY+YF+T VDDYSRATW+YL++++S++ T+ F
Sbjct: 456 NNKSSRP-FDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTF 514
Query: 573 CAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHL 632
+ QF I +RSDNA E F F G++ SC TPQQN V ERK++H+
Sbjct: 515 VTMVENQFETTIKGVRSDNAPEL---NFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHI 571
Query: 633 MEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPSCSLFPLPPKVF 692
+ VA++L FQ +P +W D +LTA YLINR+P+ +L P+ VL + + KVF
Sbjct: 572 LNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYD-HIKVF 630
Query: 693 GCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFEDC-SF 751
GC C+ K P++ C F+GY KGY+ +VS V F E+ F
Sbjct: 631 GCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPF 690
Query: 752 SGWLPSSFPVCESEDTFLTYITTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPDTQSLPS 811
G + + E F + +P Q R+ P D+ S
Sbjct: 691 LG-----SDLSQEEQNFFPDLNPTPPMQ---------------RQSSDHVNPSDSSSSVE 730
Query: 812 IPLVSSDPHDNLDLP---IALRKGKRT-------CSYPISS-------YVTSNKLSPASK 854
I L S++P +N+ P + RK K+ C +SS +++ ++++
Sbjct: 731 I-LPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYL 789
Query: 855 SFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYT 914
+F+A LD P + ++A WR AM E LE TW++ LPA K+ +GC+W++
Sbjct: 790 TFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFK 849
Query: 915 TKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLD 974
K N DGS+ R KARLVA+GY Q G+DY +TFSPVAKL+SV++L+ +AA L QLD
Sbjct: 850 IKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLD 909
Query: 975 VKNAFLHGDLQDEVYMEQPPGFVA-QGEC---GKVCRLKKSLYGLKQSPRSWFGRFSDVV 1030
+ NAFL+GDL +E+YM P G+ + QG+ VCRLKKSLYGLKQ+ R W+ +FS +
Sbjct: 910 ISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTL 969
Query: 1031 MEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLG 1090
+ G +S DHT F K ++ + ++VY+DDI+I ++ + LK+ ++ F+ +DLG
Sbjct: 970 LGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLG 1029
Query: 1091 ILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAE-GVPFSD 1149
LKYFLG+E+V S GI ISQRKY LD+L ETG +G KP PM+P M + G F +
Sbjct: 1030 ELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVE 1089
Query: 1150 PQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVY 1209
YRRL+G+L YL +TRPDI F V+ ++QF +P AH +A+ +I++Y+K G+G+ Y
Sbjct: 1090 VGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFY 1149
Query: 1210 RDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAM 1269
++++ +++AD+ R+ST+GYC+FLG +LI WKS+KQ+VV++SSAEAEYR++
Sbjct: 1150 SATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSL 1209
Query: 1270 AQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREK 1327
+ T +W+ L E+ + P L+CDN+AA+HI++N VFHERTKHIE DCH +RE+
Sbjct: 1210 SVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRER 1269
Query: 1328 LQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGMINIY 1370
L + L ++ T Q+AD FTK L + +K+G++NI+
Sbjct: 1270 LLKGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGLLNIF 1312
>At1g26990 polyprotein, putative
Length = 1436
Score = 726 bits (1873), Expect = 0.0
Identities = 484/1460 (33%), Positives = 725/1460 (49%), Gaps = 207/1460 (14%)
Query: 15 DGENYVEWKYLVAVSLGGMGKDEHLTGSCPTNATAAAKWKMDDKRILALLVNSVDKRTQS 74
DG NY W + +SL K + GS LL SVD T
Sbjct: 76 DGSNYNSWSIAMRISLDAKNKLGFVDGS--------------------LLRPSVDDSTFR 115
Query: 75 VITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAEELT 134
+ + C ++ +NL R Y L Q + +Q K L YF + K E+L
Sbjct: 116 IWSRCNSM-------------VNNLPRRYQLEQAVMTLQQGKLDLSTYFTKKKTLWEQLA 162
Query: 135 SLLSCKTKEDMLAQQKKLI-------ALSWLSGLDQEFEVVRSQILSSKQVDTLTDVFSR 187
+ S K+ Q K+L+ + +L GL +F +RSQI + K L ++++
Sbjct: 163 NTKSRSVKKCDCDQVKELLEEAETSRVIQFLMGLSDDFNTIRSQIFNMKPRPGLNEIYNM 222
Query: 188 VMQSSFEK---------PKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRGGRFG 238
+ Q ++ P P+P + G + G F
Sbjct: 223 LDQDESQRLVGFAAKSVPSPSPAAFQTQ---------------GVLNDQNTILLAQGNFK 267
Query: 239 QIQCYSCGELGHYKN*CPNSQQHQQHFQQSAPNRF--ANNVSQSDVIQTQ-PEKRTVV-- 293
+ +C C +GH + C + ++ N + + N++ +D I+TQ P +
Sbjct: 268 KPKCTHCNRIGHTVDKCYKVHGYPPGHPRAKENTYVGSTNLASTDQIETQAPPTMSATGH 327
Query: 294 --MSDDEFARYTQF-----------------------------QISQQSASPSSS----- 317
MS+D + + QI+ ++ + SS+
Sbjct: 328 ETMSNDHIQQLISYLSTKLQSPSITSCFDKAIASSSNPVPSISQITDKAIASSSNPVPSI 387
Query: 318 ---TATFVQTGNPTVCLSSTS----------RRWIIDSGATNHMTGDSGIFLSFSSSSIH 364
T TF + T TS R W+IDSGA++H+T + ++ ++ +
Sbjct: 388 SQITGTFFSLYDSTYYEMLTSSIPIETELSLRAWVIDSGASHHVTHERNLYHTYKALD-R 446
Query: 365 SSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDS 424
+ V L +G V+++G+G L + +VL++P+F NLLS+S +T++L+ V+F D
Sbjct: 447 TFVRLPNGHTVKIEGTGFIQLTDALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDE 506
Query: 425 CVFQDLSTQRIIGRGRESDGLYLL--DEGVSKASTAYRTSSVSPFQ-----LHCRLGHPS 477
C+ Q L+ + ++G+G + LY+L D+ + S+ S S + H RLGHPS
Sbjct: 507 CMIQALTKELMLGKGSQVGNLYILNLDKSLVDVSSFPGKSVCSSVKNESEMWHKRLGHPS 566
Query: 478 LGVLRKLCPQL---ESLSNFSCESCQFAKHHRSVYLP--RLNKRAMSLFHIVHSDVWGPC 532
+ L L + N C + +LP +N F +VH D WGP
Sbjct: 567 FAKIDTLSDVLMLPKQKINKDSSHCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPF 626
Query: 533 PVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNA 592
V + Y+YF+T VDD+SRATW+YL+K +S++ T+F +F + TQ++ + +RSDNA
Sbjct: 627 SVPTVDSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNA 686
Query: 593 KEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWAD 652
E F K G+ C TP+QN V ERK++HL+ VA+ALMFQ +P +W D
Sbjct: 687 HEL---KFNELFAKEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGD 743
Query: 653 AVLTAAYLINRMPSTVLNGVIPYSVLF---PSCSLFPLPPKVFGCTCFVLDVRPQVTKLD 709
VLTA +LINR+ S V+N PY L P S K FGC C+ TK D
Sbjct: 744 CVLTAVFLINRLLSPVINNETPYERLTKGKPDYSSL----KAFGCLCYCSTSPKSRTKFD 799
Query: 710 PKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFEDCSFSGWLPSSFPVCESEDT-- 767
P++ C+FLGY KGY+ +S V F+ED FP S T
Sbjct: 800 PRAKACIFLGYPMGYKGYKLLDIETYSVSISRHVIFYEDI---------FPFASSNITDA 850
Query: 768 ---FLTYITTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPDTQSLPSIPLVSSDPHDNLD 824
F +I PAP ++ SS P + S+ V S+P
Sbjct: 851 AKDFFPHIYL-PAPNN---------DEHLPLVQSSSDAPHNHDESSSMIFVPSEPKSTRQ 900
Query: 825 --LPIALRK---------GKRTCSYPISSYVTSNKLSPASKSFVAALDSVSVPKSLSDAL 873
LP L+ +T YP+++Y++ + LS +F+ + + +P+ S+A
Sbjct: 901 RKLPSHLQDFHCYNNTPTTTKTSPYPLTNYISYSYLSEPFGAFINIITATKLPQKYSEAR 960
Query: 874 SHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAK 933
W AM +E+ A TW + LPAGK VGCKW+ T K DGS+ R KARLVAK
Sbjct: 961 LDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIITIKFLADGSIERHKARLVAK 1020
Query: 934 GYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQP 993
GY Q G+D+ +TFSPVAK+ +V++L+SLA W L QLD+ NA L+GDL++E+YM+ P
Sbjct: 1021 GYTQQEGIDFFNTFSPVAKMVTVKVLLSLAPKMKWYLHQLDISNALLNGDLEEEIYMKLP 1080
Query: 994 PGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGC 1053
PG+ + G + SP + + DHT+F K +
Sbjct: 1081 PGY-------------SEIQGQEVSPNA---------------KCHGDHTLFVKAQDGFF 1112
Query: 1054 ILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRK 1113
++++VYVDDI+I + L + L FQ +DLG K+FLGIE+ + +GI + QRK
Sbjct: 1113 LVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRK 1172
Query: 1114 YVLDMLAETGLMGSKPCETPMEPGMKLTAE-GVPFSDPQQYRRLVGKLNYLTVTRPDIAF 1172
YVLD+LA + KP PMEP KL+ + G D +QYRR++GKL YL +TRPDI F
Sbjct: 1173 YVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINF 1232
Query: 1173 PVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDR 1232
VS ++Q+ S+PTD H +AL +I++YLK G+G+ Y + + FSD+DW P R
Sbjct: 1233 AVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTR 1292
Query: 1233 KSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTT--CMWVGQILSEMGIERIS 1290
+ TG+ +F+G +L+SW+SKKQ+VV+ SSAEAEYRAM+ T +W+G IL+ I
Sbjct: 1293 RCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTH 1352
Query: 1291 PMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTK 1350
P L+CDN+AALHI++N VFHERTKHIE DCH +RE ++ ++ T +VRT +QLAD TK
Sbjct: 1353 PAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTK 1412
Query: 1351 ALNGVRNDFICNKLGMINIY 1370
L +KLG++NIY
Sbjct: 1413 PLYPKPFRENNSKLGLLNIY 1432
>At1g57640
Length = 1444
Score = 725 bits (1871), Expect = 0.0
Identities = 488/1469 (33%), Positives = 741/1469 (50%), Gaps = 183/1469 (12%)
Query: 18 NYVEWKYLVAVSLGGMGKDEHLTGSCPTNATAAAKWKMDDKRILALLVN----SVDKRTQ 73
NY EW +L K L G+ P + + D I ALLV+ ++D
Sbjct: 42 NYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLE-DWLTINALLVSWMKMTIDSELL 100
Query: 74 SVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAEEL 133
+ I+H ++LWE ++ F N + + + KQ+ + Y+ + K + +
Sbjct: 101 TNISHRDVARDLWEQIRKRFS-VSNGPKNQKMKADLATCKQEGMTVEGYYGKLNKIWDNI 159
Query: 134 TSLLS----------CKTKEDMLAQQKKLIALSWLSGLDQ-EFEVVRSQILSSKQVDTLT 182
S C D ++ + +L GL++ +F +RS + S + L
Sbjct: 160 NSYRPLRICKCGRCICNLGTDQEKYREDDMVHQYLYGLNETKFHTIRSSLTSRVPLPGLE 219
Query: 183 DVFSRVMQSSFEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRGGRFGQIQ- 241
+V++ V Q + + + +D +A A R + +F +
Sbjct: 220 EVYNIVRQEEDMVNNRSSNEERTDVTAFAVQM------------RPRSEVISEKFANSEK 267
Query: 242 ------CYSCGELGHYKN*C-------------PNSQQHQQHFQQSAPNRFANNVSQS-- 280
C C GH C P + + RF +
Sbjct: 268 LQNKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPRGKSNSNGSTSRGRGRFGPGFNGGQP 327
Query: 281 -----DVIQTQP------EKRTVVMSD-DEFARYTQFQ------ISQQSASPSSSTATFV 322
+V+ T P R + SD D + T Q + S + S A
Sbjct: 328 RPTYVNVVMTGPFPSSEHVNRVITDSDRDAVSGLTDEQWRGVVKLLNAGRSDNKSNAHET 387
Query: 323 QTGNPTVCLSSTSRRWIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGC 382
Q+G C TS WI+D+GA++HMTG+ + S S + LADG+ G
Sbjct: 388 QSGT---CSLFTS--WILDTGASHHMTGNLELLSDMRSMS-PVLIILADGNKRVAVSEGT 441
Query: 383 TTPVSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRES 442
S L + SV Y+ + +L+S+ +
Sbjct: 442 VRLGSHLILKSVFYVKELESDLISVGQ--------------------------------- 468
Query: 443 DGLYLLDEGVSKASTAYRTSSVSPFQL-HCRLGHPSLGVLRKLCPQL-----ESLSNFSC 496
++DE + A TS +PF L H RLGH S ++ L +L E L N C
Sbjct: 469 ----MMDENHCVNAAAVHTSVKAPFDLWHRRLGHASDKIVNLLPRELLSSGKEILENV-C 523
Query: 497 ESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWL 556
++C AK R + P + R+M F ++H DVWGP S G +YF+T VDDYSR W+
Sbjct: 524 DTCMRAKQTRDTF-PLSDNRSMDSFQLIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWV 582
Query: 557 YLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCI 616
YLM +SE +F A + QF+ I I+RSDN E+ R + G+ H++SC+
Sbjct: 583 YLMTDKSETQKHLKDFIALVERQFDTEIKIVRSDNGTEFLC--MREYFLHKGIAHETSCV 640
Query: 617 VTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYS 676
TP QNG ERK+RH++ +A+AL FQ +P FW + +L+AAYLINR PS +L G PY
Sbjct: 641 GTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYE 700
Query: 677 VLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGR 736
+L+ + + +VFG C+ + + K +S +CVF+GY QKG+R F +
Sbjct: 701 MLYKTAPKYS-HLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQK 759
Query: 737 YLVSADVTFFEDCSFSGWLPSSFPVCESEDTFL-------TYITTSPAPQTTTG--TGFQ 787
+ VS DV F++ F P S C ED + +I + P+T G G
Sbjct: 760 FFVSRDV-IFQETEF----PYSKMSCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNIGEA 814
Query: 788 FYEKTYSRRP------KSSAPPPDTQSLPSI-PLVSSDPHDNLDL--------PIALRKG 832
+ P + S+ P + SL S+ P ++S DL PI LR+
Sbjct: 815 TVGPNVATGPIIPEINQESSSPSEFVSLSSLDPFLASSTVQTADLPLSSTTPAPIQLRRS 874
Query: 833 KR---------------------------TCSYPISSYVTSNKLSPASKSFVAALDSVSV 865
R + YPI YV ++ + + K+F+AA+ +
Sbjct: 875 SRQTQKPMKLKNFVTNTVSVESISPEASSSSLYPIEKYVDCHRFTSSHKAFLAAVTAGME 934
Query: 866 PKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLAR 925
P + ++A+ WR+AM E+ +L N T+ +V LP GK+ +G KWVY K DG++ R
Sbjct: 935 PTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIER 994
Query: 926 LKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQ 985
KARLV G Q GVDY +TF+PVAK+S+VR+ + +AA W + Q+DV NAFLHGDL+
Sbjct: 995 YKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLK 1054
Query: 986 DEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVF 1045
+EVYM+ P GF + KVCRL KSLYGLKQ+PR WF + S + ++G +S SD+++F
Sbjct: 1055 EEVYMKLPQGFQCD-DPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLF 1113
Query: 1046 FKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKN 1105
+ + ++VYVDD++I+GS + + K++L+ F KDLG+LKYFLGIEV +
Sbjct: 1114 SYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQ 1173
Query: 1106 GIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAEGVP-FSDPQQYRRLVGKLNYLT 1164
G +SQRKYVLD+++E GL+G++P P+E KL+ P SD +YRRLVG+L YL
Sbjct: 1174 GFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLV 1233
Query: 1165 VTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDAD 1224
VTRP++++ V ++QFM +P HW A IR+V+YLK PG+GI+ +++ + D+D
Sbjct: 1234 VTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSD 1293
Query: 1225 WAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTT--CMWVGQILS 1282
+A P+ R+S TGY V LG ISWK+KKQ V+RSSAEAEYRAMA T MW+ ++L
Sbjct: 1294 YAACPLTRRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLY 1353
Query: 1283 EMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGD 1342
++G+ + M+++ D+++A+ +S NPV HERTKH+EVDCHFIR+ + +I+TS+V +
Sbjct: 1354 DLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHK 1413
Query: 1343 QLADVFTKALNGVRNDFICNKLGMINIYA 1371
QLAD+ TKAL + KLG+++++A
Sbjct: 1414 QLADILTKALGEKEVRYFLRKLGILDVHA 1442
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 716 bits (1848), Expect = 0.0
Identities = 446/1354 (32%), Positives = 702/1354 (50%), Gaps = 136/1354 (10%)
Query: 53 WKMDDKRILALLVNSVDKRTQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRP 112
W D+ + + L ++ + + + T +++W L F K+ ++ R ++L Q +
Sbjct: 76 WFCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKS-SVAREFSLRQNLQLL 134
Query: 113 KQDKRKLMDYFLEFKKYAEELTSLLSCKTKEDMLAQQKKLIALSWLSGLDQEFEVVRSQI 172
+ ++ Y EFK + L+S+ + + +L+GL ++++ + + I
Sbjct: 135 SKKEKPFSVYCREFKTICDALSSIGK--------PVDESMKIFGFLNGLGRDYDPITTVI 186
Query: 173 ---LSSKQVDTLTDVFSRVMQ-----SSFEK-----PKPAPDVDTSDRSALAAHSGFRG- 218
LS T DV S V S+E+ P A +++ S+ + + +G
Sbjct: 187 QSSLSKLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAFNIERSESGSPQYNPNQKGR 246
Query: 219 GRGGGRGGRGGARGRGGRFGQIQ-----------CYSCGELGHYKN*CPNSQQHQQHFQQ 267
GR G GRGG RG F Q Q C CG GH C N
Sbjct: 247 GRSGQNKGRGGYSTRGRGFSQHQSSPQVSGPRPVCQICGRTGHTALKCYN---------- 296
Query: 268 SAPNRFANNVSQSDVIQTQPEKRTVVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNP 327
RF NN Q+++ T+ +SDD
Sbjct: 297 ----RFDNNY-QAEIQAFS----TLRVSDD------------------------------ 317
Query: 328 TVCLSSTSRRWIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVS 387
T + W DS AT H+T + S + +V + DG+ + + +G TT S
Sbjct: 318 ------TGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKS 371
Query: 388 T---LPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDG 444
+ +P++ VL +P +LLS+SK+ C V F + DL TQ+++ G +G
Sbjct: 372 SNGKIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNG 431
Query: 445 LYLLDEGVSKASTAYRTSSVSPFQLHCRLGHPSLGVLRKLCPQLESLSNFS-----CESC 499
LY+L+ A + R + + H RLGH + L+ L N S CE C
Sbjct: 432 LYVLENQEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPC 491
Query: 500 QFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLM 559
Q K R +L + R + +H D+WGP PV S G KY+ FVDDYSR +W Y +
Sbjct: 492 QMGKSSRLPFLIS-DSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPL 550
Query: 560 KSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTP 619
++SE ++F +F + Q N I + +SD E+ S +T + +HG+ H+ SC TP
Sbjct: 551 HNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTP 610
Query: 620 QQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLF 679
QQNG+AERK+RHL+E+ +++F P+ FW ++ TA Y+INR+PS+VL + PY LF
Sbjct: 611 QQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALF 670
Query: 680 ---PSCSLFPLPPKVFGCTCFVLDVRPQV-TKLDPKSLKCVFLGYSRTQKGYRCFSPALG 735
P S +VFG C+ +RP K DP+SL+CVFLGY+ KGYRCF P G
Sbjct: 671 GEKPDYSSL----RVFGSACYPC-LRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTG 725
Query: 736 RYLVSADVTFFEDC-----SFSGWLPS-SFPVCES-EDTFLTYITTSPAP--------QT 780
+ +S +V F E + +P S P+ ++ + ++ I+ AP
Sbjct: 726 KVYISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKPIDL 785
Query: 781 TTGTGFQFYEKTYSRRPKSSAPPPDTQSLPSIPLVSSDPHDNLDLPIALRKGKRTCSYPI 840
T G Q E+ P S+ D + P ++++ ++ + K P
Sbjct: 786 NTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPN 845
Query: 841 SSYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPL 900
+ Y + + + + + PK+L+ A+ H GW +A+ EE+ + TW LVP
Sbjct: 846 TRY-----------ALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPP 894
Query: 901 PAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILI 960
++ KWV+ TK++PDGS+ +LKARLVAKG+ Q GVDY +TFSPV + +++R+++
Sbjct: 895 TDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVL 954
Query: 961 SLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPR 1020
++ + WP+ QLDV NAFLHG+LQ+ V+M QP GF+ + VCRL K++YGLKQ+PR
Sbjct: 955 DVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPR 1014
Query: 1021 SWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFL 1080
+WF FS+ ++++G S+SD ++F + + L++YVDDI++TGSD + +L L
Sbjct: 1015 AWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQAL 1074
Query: 1081 QMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKL 1140
+ +F KDLG +YFLGI++ NG+ + Q Y D+L + G+ P TP+ P
Sbjct: 1075 KNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPL-PQQLD 1133
Query: 1141 TAEGVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLK 1200
F++P +R L GKL YLT+TRPDI F V+ + Q M SPT + + L RI++Y+K
Sbjct: 1134 NLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIK 1193
Query: 1201 KAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARS 1260
G G+ + + + + A+SD+D AG R+STTG+C+ LG NLISW +K+Q V+ S
Sbjct: 1194 GTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNS 1253
Query: 1261 SAEAEYRAM--AQTTCMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIE 1318
S EAEYRA+ A W+ +L ++GI + P +++CDN +A+++S+NP H R+KH +
Sbjct: 1254 STEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFD 1313
Query: 1319 VDCHFIREKLQQNLISTSYVRTGDQLADVFTKAL 1352
D H+IRE++ LI T ++ QLADVFTK+L
Sbjct: 1314 TDYHYIREQVALGLIETQHISATFQLADVFTKSL 1347
>At4g17450 retrotransposon like protein
Length = 1433
Score = 708 bits (1828), Expect = 0.0
Identities = 462/1446 (31%), Positives = 709/1446 (48%), Gaps = 191/1446 (13%)
Query: 15 DGENYVEWKYLVAVSLGGMGKDEHLTGSCPTNATAAAKWKMDDKRILALLVNSVDKRTQS 74
DG NY W + +SL K + GS P + +K+ + NS+ K
Sbjct: 86 DGTNYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFKIWSR------CNSMVKTWL- 138
Query: 75 VITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAEELT 134
V E+W L F + NL R Y L Q I KQ L Y+ + K E+L
Sbjct: 139 ----LNVVTEMWNDLFSRF-RVSNLPRKYQLEQSIHTLKQGNLDLSTYYTKKKTLWEQLA 193
Query: 135 SL-------LSCKTKEDMLAQQKKLIALSWLSGLDQEFEVVRSQILSSKQVDTLTDVFSR 187
+ +C+ +++L + + + +L GL+ F +R QIL+ K LT++++
Sbjct: 194 NTRVLTVRKCNCEHVKELLEEAETSRIIQFLMGLNDNFAHIRGQILNMKPRPGLTEIYNM 253
Query: 188 VMQSSFEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRGGRFGQIQCYSCGE 247
+ Q ++ P + + S + G + + +C C +
Sbjct: 254 LDQDESQRLVGNPTLSNPTAAFQVQASPIIDSQ---------VNMAQGSYKKPKCSYCNK 304
Query: 248 LGHYKN*CPNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKRTVVMSDDEFARYTQFQI 307
LGH + C + + + + S Q QP T D + ++ QI
Sbjct: 305 LGHLVDKCYKKHGYPPGSKWTKGQTIGSTNLAST--QLQPVNETPNEKTDSYEEFSTDQI 362
Query: 308 SQQ-----------SASPSSSTATFVQTGNPTV---------------------CLSSTS 335
SASP +T++ + +P+V +SS S
Sbjct: 363 QTMISYLSTKLHIASASPMPTTSSASISASPSVPMISQISGTFLSLFSNAYYDMLISSVS 422
Query: 336 -------RRWIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVST 388
R W+IDSGAT+H+T + ++L+F S ++ V L + V++ G G
Sbjct: 423 QEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSLE-NTFVRLPNDCTVKIAGIGFIQLSDA 481
Query: 389 LPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLL 448
+ + +VLY+P+F NL+S +L+ + +IGRG + LY+L
Sbjct: 482 ISLHNVLYIPEFKFNLIS----------------------ELTKELMIGRGSQVGNLYVL 519
Query: 449 DEGVSKASTAYR-TSSVSP------------FQLHCRLGHPSLGVLRKLCPQLE------ 489
D + + + + T+S+ P H RLGHP+ + L L
Sbjct: 520 DFNENNHTVSLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLKVKKI 579
Query: 490 ----SLSNFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVT 545
S C C +K + R N + F +VH D WGP V +
Sbjct: 580 NKEHSPVCHVCHVCHLSKQKHLSFQSRQNM-CSAAFDLVHIDTWGPFSVPT--------- 629
Query: 546 FVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMD 605
+ ATW+YL+K++S++ +F F + TQ+ + +RSDNA E F
Sbjct: 630 -----NDATWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSDNAHEL---KFTDLFA 681
Query: 606 KHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMP 665
HG++ SC TP+QN V ERK++H++ VA+AL+FQ +P FW D VLTA +LINR+P
Sbjct: 682 AHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLP 741
Query: 666 STVLNGVIPYSVLFPSCSLFPLPP-----KVFGCTCFVLDVRPQVTKLDPKSLKCVFLGY 720
+ VLN PY L +PP K FGC C+ Q K +P++ CVFLGY
Sbjct: 742 TPVLNNKSPYE------KLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGY 795
Query: 721 SRTQKGYRCFSPALGRYLVSADVTFFEDCSFSGWLPSSFPVCES--EDTFLTYITTSPAP 778
KGY+ +S V F ED FP S +D + P
Sbjct: 796 PLGYKGYKLLDIETHAVSISRHVIFHEDI---------FPFISSTIKDDIKDFFPLLQFP 846
Query: 779 QTTTGTGFQFYEKTYSRRPKSSAPPPDTQSLPSIPLVSSDPHDNLDLPIAL------RKG 832
T D L ++ + PH ++ AL K
Sbjct: 847 ART-----------------------DDLPLEQTSIIDTHPHQDVSSSKALVPFDPLSKR 883
Query: 833 KRTCSYPISSYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHN 892
++ + + N + +F+ + + +P+ S+A W AM+EE+ A+
Sbjct: 884 QKKPPKHLQDFHCYNNTTEPFHAFINNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRT 943
Query: 893 ATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAK 952
TW +V LP K+ +GCKWV+T K N DGS+ R KARLVAKGY Q G+DY +TFSPVAK
Sbjct: 944 NTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAK 1003
Query: 953 LSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFV-AQGEC---GKVCRL 1008
L+SVR+++ LAA W + QLD+ NAFL+GDL +E+YM+ PPG+ GE +CRL
Sbjct: 1004 LTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRL 1063
Query: 1009 KKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGS 1068
KS+YGLKQ+ R W+ + S+ + G ++S +DHT+F K N + ++VYVDDI+I +
Sbjct: 1064 HKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSN 1123
Query: 1069 DSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSK 1128
+ + L+ F+ +DLG KYFLGIE+ S+ GI I QRKY+L++L+ TG +GSK
Sbjct: 1124 SDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSK 1183
Query: 1129 PCETPMEPGMKLTAE-GVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDA 1187
P P++P +KL E GVP +D YR+LVGKL YL +TRPDIA+ V+ + QF +PT
Sbjct: 1184 PSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSV 1243
Query: 1188 HWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLI 1247
H A+ ++++YLK G+G+ Y + ++D+D+ R+ YC+F+G L+
Sbjct: 1244 HLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLV 1303
Query: 1248 SWKSKKQNVVARSSAEAEYRAMAQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHIS 1305
SWKSKKQ+ V+ S+AEAE+RAM+Q T +W+ ++ + + I P L+CDN AALHI
Sbjct: 1304 SWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIV 1363
Query: 1306 SNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLG 1365
+N VFHERTK +E+DC+ RE ++ + T +V TG+Q+AD TKA++ + + K+G
Sbjct: 1364 NNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHPAQFHKLIGKMG 1423
Query: 1366 MINIYA 1371
+ NI+A
Sbjct: 1424 VCNIFA 1429
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 695 bits (1794), Expect = 0.0
Identities = 478/1520 (31%), Positives = 729/1520 (47%), Gaps = 295/1520 (19%)
Query: 18 NYVEWKYLVAVSLGGMGKDEHLTGSC---PTNATAAAKWKMDDKRILALLVNSVDKRTQS 74
++ W+ + ++L K + G+ P + W + + L+NSVDK+
Sbjct: 56 DFHSWRRSILMALNVRNKLGFINGTITKPPEDHRDFGAWSRCNDIVSTWLMNSVDKKIGQ 115
Query: 75 VITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFL-------EFK 127
+ + TV+ +W L F K D+ RI+ + Q + + +Q + Y+ E +
Sbjct: 116 SLLYIATVQGIWNNLLSRF-KQDDAPRIFDIEQKLSKIEQGSMDISTYYTALLTLWEEHR 174
Query: 128 KYAE-ELTSLLSCK----TKEDMLAQQKKLIALSWLSGLDQEFEVVRSQILSSKQVDTLT 182
Y E + + C+ K + L Q+ ++ +L L++ F+ R IL K + T+
Sbjct: 175 NYVELPVCTCGRCECDAAVKWEHLQQRSRV--TKFLKELNEGFDQTRRHILMLKPIPTIK 232
Query: 183 DVFSRVMQSSFEK-PKPAPDVDT-----------SDRSALAAHSGFRGGRGGGRGGRGGA 230
+ F+ V Q ++ KP VD+ + + +AA++ R +
Sbjct: 233 EAFNMVTQDERQRNVKPLTRVDSVAFQNTSMINEDENAYVAAYNTVRPNQ---------- 282
Query: 231 RGRGGRFGQIQCYSCGELGHYKN*C--------------------PNSQQHQQHFQQSAP 270
+ C CG++GH C PN Q H Q P
Sbjct: 283 --------KPICTHCGKVGHTIQKCYKVHGYPPGMKTGNTGYTYKPNPQLHVQPRMPMMP 334
Query: 271 --------NRFANNVSQSDVIQTQPEKRTVVMSD--------DEFARYTQFQIS------ 308
+ N++ +++V+ + S+ + + Y I+
Sbjct: 335 QPRMQFPAQPYTNSMQKANVVAQVYAETGAYPSEGYSQAPMMNPYGSYPMPHITHGGNNL 394
Query: 309 -------QQSASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATNHMTGDSGIFLSFSSS 361
QQ S VQ P S+ S + +T SG + F S+
Sbjct: 395 SLQDFTPQQIEQMISQFQAQVQVPEPAASSSNPSPLATVSEHGFMALTSTSGTIIPFPST 454
Query: 362 SIH-------------------------------SSVTLADGSIVR--VKGSGCTTPVST 388
S+ SS +D ++ R SG
Sbjct: 455 SLKYENNDLKFQNHTLSALQKFLPSDAWIIDSGASSHVCSDLAMFRELKSVSGTVHITQK 514
Query: 389 LPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLL 448
L + +VL++P F NL+S+S + +++ CS F+ D C+ Q+LS +IGRGR LY+L
Sbjct: 515 LILHNVLHVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQELSQGLMIGRGRLYHNLYIL 574
Query: 449 DEGVSKASTA------YRTSSVSPFQL-HCRLGHPSLGVLRKLCPQLESLSNFSCESCQF 501
+ + ST+ + S ++ L H RLGHPS VL+KL
Sbjct: 575 ETENTSPSTSTPAACLFTGSVLNDGHLWHQRLGHPSSVVLQKL----------------- 617
Query: 502 AKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKS 561
R Y+ N A + F +VH D+WGP + S G++YF+T VDD +R TW+Y++++
Sbjct: 618 ---KRLAYISH-NNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVDDCTRTTWVYMLRN 673
Query: 562 RSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQ 621
+ ++ ++F F + TQFN I +RSDNA E F + +HGM+H SC TPQQ
Sbjct: 674 KKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPE---LGFTEIVKEHGMLHHFSCAYTPQQ 730
Query: 622 NGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLF-- 679
N V ERK++H++ VA+AL+FQ +P +W+D V TA +LINR+PS +LN PY ++
Sbjct: 731 NSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLLNNKSPYELILNK 790
Query: 680 -PSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYL 738
P SL K FGC CFV + TK P++ CVFLGY KGY+
Sbjct: 791 QPDYSLL----KNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDLESHSVT 846
Query: 739 VSADVTFFEDCSFSGWLPSSFPVCESE------DTFLTYITTSPAP-------------- 778
VS +V F E FP SE D F I PAP
Sbjct: 847 VSRNVVFKEHV---------FPFKTSELLNKAVDMFPNSILPLPAPLHFVETMPLIDEDS 897
Query: 779 --QTTTGTGFQFYEKTYSRRPKSSAPPP----DTQSLPS--------------------- 811
TTT + + S S PP +TQ + S
Sbjct: 898 LIPTTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDSNAVPITRSKRTTRAPSYLSEY 957
Query: 812 ----IPLVSSDPHDNLDLPI-------ALRKGKRTCSYPISSYVTSNKLSPASKSFVAAL 860
+P +S+ P + +PI K+T YPIS+ V+ +K +P +S++ A
Sbjct: 958 HCSLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIFAY 1017
Query: 861 DSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPD 920
++ + PK+ S A+ W + EE+ A+E N TW + LP K VVGCKWV+T K NPD
Sbjct: 1018 NTETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYNPD 1077
Query: 921 GSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFL 980
G++ R KARLVA+G+ Q G+D+ DTFSPVAKL+S ++++ LAA W L Q+DV +AFL
Sbjct: 1078 GTVERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDAFL 1137
Query: 981 HGDLQDEVYMEQPPGFVAQGEC----GKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLR 1036
HGDL +E++M P G+ VCRL KS+YGLKQ+ R W+ RF
Sbjct: 1138 HGDLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKRF---------- 1187
Query: 1037 RSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFL 1096
+ +VY+DDI+I ++ + NLK L+ +F+ KDLG ++FL
Sbjct: 1188 -----------------VAALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFL 1230
Query: 1097 GIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAE-GVPFSDPQQYRR 1155
GL+G KP PM+P + L + G P +P YR+
Sbjct: 1231 --------------------------GLLGCKPSSIPMDPTLHLVRDMGTPLPNPTAYRK 1264
Query: 1156 LVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHM 1215
L+G+L YLT+TRPDI + V +SQF+S+P+D H +A ++++Y+K PG+G++Y +
Sbjct: 1265 LIGRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEI 1324
Query: 1216 RVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC- 1274
+ FSDADWA R+S +G+C++LG +LISWKSKKQ V +RSS E+EYR+MAQ TC
Sbjct: 1325 CLNGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCE 1384
Query: 1275 -MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLI 1333
+W+ Q+L ++ I P KL+CDN++ALH S NPVFHERTKHIE+DCH +R++++ +
Sbjct: 1385 IIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNL 1444
Query: 1334 STSYVRTGDQLADVFTKALN 1353
+V T +Q AD+ TKAL+
Sbjct: 1445 KALHVPTENQHADILTKALH 1464
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 693 bits (1789), Expect = 0.0
Identities = 407/1051 (38%), Positives = 583/1051 (54%), Gaps = 56/1051 (5%)
Query: 367 VTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCV 426
+ LADG G S L M SV Y+ +F +L+SI ++ +C + V
Sbjct: 291 IVLADGRERISVKEGTVRLGSNLVMISVFYVEEFQSDLISIGQLMDENRCVLQMSDRFLV 350
Query: 427 FQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQL-HCRLGHPSLGVLRKLC 485
QD +++ ++G GR G + AS + ++L H R+GHP+ V+ +
Sbjct: 351 VQDRTSRMVMGAGRRVGGTFHFRSTEIAASVTVKEEK--NYELWHSRMGHPAARVVSLIP 408
Query: 486 PQLESLS----NFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYK 541
S+S N +C+ C AK R+ + +NK + +F +++ D+WGP S G +
Sbjct: 409 ESSVSVSSTHLNKACDVCHRAKQTRNSFPLSINK-TLRIFELIYCDLWGPYRTPSHTGAR 467
Query: 542 YFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFR 601
YF+T +DDYSR WLYL+ +SE NF A QFN I +RSDN E+
Sbjct: 468 YFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLC--LT 525
Query: 602 TFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLI 661
F + G+IH+ SC+ TP++N ERK+RHL+ VA+AL FQ +P FW + VLTAAYLI
Sbjct: 526 KFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLI 585
Query: 662 NRMPSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYS 721
NR PS+VLN PY L F +VFG C+ + K +S +CVF+GY
Sbjct: 586 NRTPSSVLNDSTPYERLHKKQPRFD-HLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYP 644
Query: 722 RTQKGYRCFSPALGRYLVSADVTFFEDCSFSGWLPSSFPVCESEDTFLTYI--------- 772
QKG+R F + VS DV F E F + V E E+ L
Sbjct: 645 HGQKGWRLFDLEQNEFFVSRDVVFSE-LEFPFRISHEQNVIEEEEEALWAPIVDGLIEEE 703
Query: 773 -----TTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPDTQSLPSIPLVSSDPHDNLDLP- 826
P P + T SR S++ P DT+ +P+ P S+ + P
Sbjct: 704 VHLGQNAGPTPPICVSSPIS-PSATSSRSEHSTSSPLDTEVVPT-PATSTTSASSPSSPT 761
Query: 827 ----IALRKGKRTCSYPISSYV--------TSNKLSPAS-KSFV----------AALDSV 863
+ L + K T + ++ T NK P + K FV + L+S+
Sbjct: 762 NLQFLPLSRAKPTTAQAVAPPAVPPPRRQSTRNKAPPVTLKDFVVNTTVCQESPSKLNSI 821
Query: 864 SVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSL 923
D + A E N TW + LP GK+ +G +WVY K N DGS+
Sbjct: 822 LYQLQKRDDTRRFSASHTTYVAIDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSV 881
Query: 924 ARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGD 983
R KARLVA G Q G DY +TF+PVAK+++VR+ + +A +W + Q+DV NAFLHGD
Sbjct: 882 ERYKARLVALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGD 941
Query: 984 LQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHT 1043
L++EVYM+ PPGF A KVCRL+K+LYGLKQ+PR WF + + + +G ++S +D++
Sbjct: 942 LREEVYMKLPPGFEASHP-NKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYS 1000
Query: 1044 VFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYS 1103
+F I +++YVDD++ITG+ K +L F KDLG LKYFLGIEV S
Sbjct: 1001 LFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARS 1060
Query: 1104 KNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAEGVPF-SDPQQYRRLVGKLNY 1162
GI I QRKY LD+++ETGL+G KP P+E KL P +DPQ+YRRLVG+L Y
Sbjct: 1061 TTGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIY 1120
Query: 1163 LTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSD 1222
L VTR D+AF V ++++FM P + HW A +R+V+YLK PG+G+ R G ++ + D
Sbjct: 1121 LAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCD 1180
Query: 1223 ADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMA--QTTCMWVGQI 1280
+DWAG PM R+S TGY V G + ISWK+KKQ+ V++SSAEAEYRAM+ + +W+ Q+
Sbjct: 1181 SDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQL 1240
Query: 1281 LSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRT 1340
L +G+ + PM + CD+++A++I++NPVFHERTKHIE+D HF+R++ + +I+ +V T
Sbjct: 1241 LFSLGVSHVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGT 1300
Query: 1341 GDQLADVFTKALNGVRNDFICNKLGMINIYA 1371
QLAD+FTK L KLG+ N+YA
Sbjct: 1301 TSQLADIFTKPLGRDCFSAFRIKLGIRNLYA 1331
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 678 bits (1749), Expect = 0.0
Identities = 484/1503 (32%), Positives = 714/1503 (47%), Gaps = 237/1503 (15%)
Query: 18 NYVEWKYLVAVSLGGMGKDEHLTGSCP----TNATAAA--------KWKMDDKRILALLV 65
NY+ W V G L GS P T T A +W+ DK I + ++
Sbjct: 30 NYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLIYSAIL 89
Query: 66 NSVDKRTQSVITHCQTVKELWEFLQFIFGKAD-----------NLNRIYALLQ*IFRPKQ 114
++ Q ++ T ++WE L+ I+ +++ L + + +Q
Sbjct: 90 GAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRFITRFDQLALLGKPMDHDEQ 149
Query: 115 DKRKLMDYFLEFKKYAEEL----TSLLSCKTKEDMLAQQKKLIALSWLSGLDQEFEVVRS 170
+R L + ++K +++ T + E ++ ++ KL+AL+ E + +
Sbjct: 150 VERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALN-----SAEVVPITA 204
Query: 171 QILSSKQVDTLTDVFSRVMQSSFEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGA 230
+++ + +T + +R ++ + ++RS + ++ G R
Sbjct: 205 NVVTHRNTNTNRNQNNRGDNRNYN--------NNNNRS-----NSWQPSSSGSRSDNRQP 251
Query: 231 RGRGGRFGQIQCYSCGELGHYKN*CPNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKR 290
+ GR C C GH CP Q H QS N+
Sbjct: 252 KPYLGR-----CQICSVQGHSAKRCP-----QLHQFQSTTNQ------------------ 283
Query: 291 TVVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATNHMTG 350
QQS SP + + N V + W++DSGAT+H+T
Sbjct: 284 ------------------QQSTSPFTP---WQPRANLAVNSPYNANNWLLDSGATHHITS 322
Query: 351 DSGIFLSFSSSSIHSSVT------LADGSIVRVKGSGCTT-PVST--LPMSSVLYLPQFP 401
D F++ S H T +ADGS + + +G + P S+ L ++ VLY+P
Sbjct: 323 D------FNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIH 376
Query: 402 CNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRT 461
NL+S+ ++ + + SV FFP S +DL+T + +G+ D LY S+A + + +
Sbjct: 377 KNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFAS 436
Query: 462 --SSVSPFQLHCRLGHPSLGVLRKLC-----PQLE-SLSNFSCESCQFAKHHRSVYLPRL 513
S + H RLGHPSL +L + P L S SC C K H+ +P
Sbjct: 437 PCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHK---VPFS 493
Query: 514 NKRAMSL--FHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCN 571
N S ++SDVW P+ S Y+Y+V FVD ++R TWLY +K +S++ F
Sbjct: 494 NSTITSSKPLEYIYSDVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFII 552
Query: 572 FCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRH 631
F + + +F I L SDN E+ R ++ +HG+ H +S TP+ NG++ERK+RH
Sbjct: 553 FKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRH 610
Query: 632 LMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPSCSLFPLPP-- 689
++E+ L+ VPK +W A A YLINR+P+ +L P+ LF PP
Sbjct: 611 IVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQ------KLFGQPPNY 664
Query: 690 ---KVFGCTCFVLDVRP-QVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTF 745
KVFGC C+ +RP KL+ KS +C F+GYS TQ Y C GR S V F
Sbjct: 665 EKLKVFGCACYPW-LRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQF 723
Query: 746 FEDC-------------------SFSGW-----LPSSFPVCESEDTFLTYITTSPAPQT- 780
E C S W LP++ V + ++ TSP P +
Sbjct: 724 DERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSS 783
Query: 781 -----TTGTGFQFYEKTYSRRPKSSAP-------------PPDTQSLPSIPLVSSDPHDN 822
TT + P SS P P TQ+ S + ++P+ N
Sbjct: 784 PSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPN 843
Query: 823 LDLPIALRKGKRTCSYPIS-------SYVTSNKLSPASK--------------------- 854
P + + PIS S S SP+S
Sbjct: 844 SPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNA 903
Query: 855 ------------------------SFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALE 890
S+ +L + S P++ A+ WRQAM E+ A
Sbjct: 904 QAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQI 963
Query: 891 HNATWDLV-PLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSP 949
N TWDLV P P +VGC+W++T K N DGSL R KARLVAKGY Q G+DY +TFSP
Sbjct: 964 GNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP 1023
Query: 950 VAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLK 1009
V K +S+RI++ +A WP+ QLDV NAFL G L DEVYM QPPGFV + VCRL+
Sbjct: 1024 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLR 1083
Query: 1010 KSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSD 1069
K++YGLKQ+PR+W+ ++ G S SD ++F Q + I ++VYVDDI+ITG+D
Sbjct: 1084 KAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGND 1143
Query: 1070 SEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKP 1129
+ + + L +F K+ L YFLGIE G+ +SQR+Y LD+LA T ++ +KP
Sbjct: 1144 TVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKP 1203
Query: 1130 CETPMEPGMKLTA-EGVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAH 1188
TPM KLT G DP +YR +VG L YL TRPD+++ V+ +SQ+M PTD H
Sbjct: 1204 VATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDH 1263
Query: 1189 WEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLIS 1248
W AL R+++YL P GI + + + A+SDADWAG D ST GY V+LG + IS
Sbjct: 1264 WNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPIS 1323
Query: 1249 WKSKKQNVVARSSAEAEYRAMAQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHISS 1306
W SKKQ V RSS EAEYR++A T+ W+ +L+E+GI+ P ++CDN A ++ +
Sbjct: 1324 WSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCA 1383
Query: 1307 NPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGM 1366
NPVFH R KHI +D HFIR ++Q + +V T DQLAD TK L+ V K+G+
Sbjct: 1384 NPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443
Query: 1367 INI 1369
I +
Sbjct: 1444 IKV 1446
>At3g25450 hypothetical protein
Length = 1343
Score = 554 bits (1428), Expect = e-157
Identities = 342/1049 (32%), Positives = 538/1049 (50%), Gaps = 35/1049 (3%)
Query: 327 PTVCLSSTSRRWIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPV 386
PT S + W +D+GA+NHMTG+ F I V D S + +KG G +
Sbjct: 281 PTELESCINNAWYLDNGASNHMTGNRAWFCKLDEM-ITGKVRFGDDSCINIKGKGSIPFI 339
Query: 387 STLPMSSVL----YLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRES 442
S +L Y+P N+LS+ + T S C + D D +I R
Sbjct: 340 SKGGERKILFDVYYIPDLKSNILSLGQATES-GCDIRMREDYLTLHDREGNLLIKAQRSR 398
Query: 443 DGLYLLDEGVSKASTAYRTSSVSPFQLHCRLGHPSLGVLRKLCPQLESLSNFS------- 495
+ LY + V + T++ H RLGH S ++ + + + S
Sbjct: 399 NRLYKVSLEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSSVPQEKE 458
Query: 496 -CESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRAT 554
C SC F K R + + RA + ++H D+ GP ++ +Y +DD+SR
Sbjct: 459 TCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYM 518
Query: 555 WLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSS 614
W L+K +SE F F F A + + I R+D E+ S F+ F K G+ +
Sbjct: 519 WSILLKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLT 578
Query: 615 CIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIP 674
TPQQNGV ER+NR L+ + ++++ M +P W +AV + YLINR+ + L+ P
Sbjct: 579 APYTPQQNGVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTP 638
Query: 675 YSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPAL 734
Y V F +VFGC + P + KLD +S V+LG K YR P
Sbjct: 639 YEV-FKHKKPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTK 697
Query: 735 GRYLVSADVTFFEDCSFSGWLPSSFPVCESEDTFLTYITTSPAPQTTTGTGFQFYEKTYS 794
R VS DV F E+ S+ W SS + TF ++ T E S
Sbjct: 698 RRIFVSRDVVFDENRSWM-WQESSSETDKESGTFTITLSEFGNNGVT--------ENDIS 748
Query: 795 RRPKSSAPPP-DTQSLPSIPLVSSDPHD-NLDLPIALRKGKRTCSYP--ISSYVTSNKLS 850
P+ + + + I ++ HD + + P +R+ +R P + YV ++
Sbjct: 749 TEPEETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVLCAEIE 808
Query: 851 PASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCK 910
A +A D P +A WR A +EE+ ++E N TW LV LP G + +G K
Sbjct: 809 -AEHLLLAVNDE---PWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVK 864
Query: 911 WVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPL 970
WV+ K N DGS+ + KARLVAKGY Q +GVD+ + F+PVA++ +VR++I+LAA+N W +
Sbjct: 865 WVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEI 924
Query: 971 FQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVV 1030
LDVK AFLHG+L+++VY+ QP GF + KV +L K+LYGL+Q+PR+W + ++++
Sbjct: 925 HHLDVKTAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEIL 984
Query: 1031 MEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLG 1090
E + + +++ KQ + +++ VYVDD+++TGS+ + I N K + KF+ DLG
Sbjct: 985 KELKFEKCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLG 1044
Query: 1091 ILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLT-AEGVPFSD 1149
L Y+LGIEV+ SK+GI + Q +Y +L E G+ TPM ++L+ A+ D
Sbjct: 1045 KLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRID 1104
Query: 1150 PQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVY 1209
YRR +G L YL TRPD+++ V ++S+++ P ++H AL +I++YL+ G+ +
Sbjct: 1105 ETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYF 1164
Query: 1210 RDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAM 1269
+ + + +SD+ D KST G+ +L I+W S+KQ VV SS EAE+ A
Sbjct: 1165 KKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAA 1224
Query: 1270 AQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREK 1327
+ +W+ ++L+E+ + + DN++A+ ++ NPVFH R+KHI HFIRE
Sbjct: 1225 TEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIREC 1284
Query: 1328 LQQNLISTSYVRTGDQLADVFTKALNGVR 1356
++ I +V Q AD+ TKAL ++
Sbjct: 1285 VENGQIEVEHVPGVRQKADILTKALGKIK 1313
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 550 bits (1416), Expect = e-156
Identities = 409/1350 (30%), Positives = 646/1350 (47%), Gaps = 110/1350 (8%)
Query: 46 NATAAAKWKMDDKRILALLVNSVDKRTQSVITHCQTVKELWEFLQFIFGKADNLNRIYAL 105
+A A+ + DK + +N DK + I C+T E WE L +F +R+Y
Sbjct: 36 DADEVARLERCDKAKNVIFLNVADKVLRK-IELCKTAAEAWETLDRLFMIRSLPHRVYTQ 94
Query: 106 LQ*IFRPKQDKRKLMDYFLEFKKYAEELTSLLSCKTKEDMLAQQKKLIALSWLSGLDQEF 165
L Q+ +K+ + +F K +L L T E + A+ LS L +
Sbjct: 95 LSFYTFKMQENKKIDENIDDFLKIVADLNHLQIDVTDE--------VQAILLLSSLPARY 146
Query: 166 EVVRSQILSSKQVDTLTDVFSRVMQSSFEKPKPAPDVDTSDRSALAAH--SGFRGGRGGG 223
+ + + S + L VM ++ +K + ++ ++R + H G G+
Sbjct: 147 DGLVETMKYSNSREKLR--LDDVMVAARDKER---ELSQNNRPVVEGHFARGRPDGKNNN 201
Query: 224 RGGRGGARGRG-GRFGQIQCYSCGELGHYKN*CPNSQQHQQHFQQSAPNRFANNVSQSDV 282
+G +G R R G+ C+ CG+ GH+K C + + QQ + N ++ ++
Sbjct: 202 QGNKGKNRSRSKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEA 261
Query: 283 IQTQPEKRTVVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRRWIIDS 342
V+++ DE T V T S + W++D+
Sbjct: 262 FNPA----MVLLATDE---------------------TLVVT-------DSIANEWVLDT 289
Query: 343 GATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGC----TTPVSTLPMSSVLYLP 398
G + HMT F F S V + + + VKG G + S + ++ V Y+P
Sbjct: 290 GCSFHMTPRKDWFKDFKELS-SGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMP 348
Query: 399 QFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKASTA 458
NL+S+ + F + + + I +G++ D LY+LD GV++ +
Sbjct: 349 NMTRNLISLGTLEDR---GCWFKSQDGILKIVKGCSTILKGQKRDTLYILD-GVTEEGES 404
Query: 459 YRTSSVSPFQL--HCRLGHPSLG----VLRKLCPQLESLSNFS-CESCQFAKHHRSVYLP 511
+ ++ V H RLGH S +++K C + E + CE C + K HR + P
Sbjct: 405 HSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFAP 464
Query: 512 RLNKRAMSLFHIVHSDVWGPCPVTSKLGY-KYFVTFVDDYSRATWLYLMKSRSELFTIFC 570
+ L + VHSD+WG + LG +YF++FVDDYSR W+Y ++ + E F F
Sbjct: 465 AQHVTKEKLAY-VHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFV 523
Query: 571 NFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNR 630
+ + Q + + LR+DN EY + F F + G++ +C TPQQNG+AER NR
Sbjct: 524 EWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNR 583
Query: 631 HLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIP---YSVLFPSCSLFPL 687
+M+ ++++ + + K FWA+A TA YLINR PST +N +P ++ P S
Sbjct: 584 TIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSL-- 641
Query: 688 PPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFE 747
+ FGC ++ KL+P+S K +F Y KGY+ + + ++S +V F E
Sbjct: 642 --RKFGCLAYI---HADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIFRE 696
Query: 748 DCSFSGWLPSSFPVCESEDTFLTYITTSPAPQTTTGTGFQFY------EKTYSRRPKSSA 801
F S D + Q T G E T S P ++
Sbjct: 697 QVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVLNS 756
Query: 802 PP--PDTQSLPSIPLVSSDPHDNLDLPIALRKGKRTCSYPISSYVTSNKLSPASKSFVAA 859
P D +S SD ++L +R R Y SN + A + +
Sbjct: 757 PTHSQDEESEEE----DSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFA---YYSE 809
Query: 860 LDSVSVPKSLSDALSHAGWRQ---AMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTK 916
D PKS +AL W + AM+EEM+++ N TWDLV P +++GC+WV+T K
Sbjct: 810 DDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRK 869
Query: 917 VNPDGSLA-RLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDV 975
G A R ARLVAKG+ Q GVDY + FSPV K S+R L+S+ + L Q+DV
Sbjct: 870 AGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDV 929
Query: 976 KNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGL 1035
K AFLHG L++E+YM QP GF + KVC LK+SLYGLKQSPR W RF + +
Sbjct: 930 KTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKY 989
Query: 1036 RRSESDHTVFFKQTNKGC-ILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKY 1094
RS D V+FK+ N I L++YVDD++I ++ + LK L +F+ KDLG K
Sbjct: 990 TRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKK 1049
Query: 1095 FLGIEVVYSKNG--IMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAEGVPFSDPQ- 1151
LG+E+ ++ + +SQ YV +L + +KP TP+ KL A + Q
Sbjct: 1050 ILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQF 1109
Query: 1152 ------QYRRLVGKLNYLTV-TRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPG 1204
Y +G + Y + TRPD+A+ + V+S+FMS P HW+A+ +++Y++
Sbjct: 1110 ERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEK 1169
Query: 1205 RGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEA 1264
+ + +R + + D+D+ + R+S TGY +GGN ISWKSK Q VVA SS EA
Sbjct: 1170 KKLCFRKQEDFLLRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEA 1229
Query: 1265 EYRAMAQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCH 1322
EY A+ + +W+ +E+G + +++ D+Q+A+ ++ N V HERTKHI++ H
Sbjct: 1230 EYMALTEAVKEALWLKGFAAELGHSQ-DYVEVHSDSQSAITLAKNSVHHERTKHIDIRLH 1288
Query: 1323 FIREKLQQNLISTSYVRTGDQLADVFTKAL 1352
FIR+ + LI + T A++FTK +
Sbjct: 1289 FIRDIICAGLIKVVKIATECNPANIFTKTV 1318
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 526 bits (1354), Expect = e-149
Identities = 260/576 (45%), Positives = 379/576 (65%), Gaps = 14/576 (2%)
Query: 796 RPKSSAPPP------DTQSLPSIPLVSSDPHDNLDLPIALRKGKR-TCSYPISSYVTSNK 848
RPK +A P S+P + +S +++ P + K+ T YP+S+ ++ +K
Sbjct: 448 RPKRNAKAPAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDK 507
Query: 849 LSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVG 908
L+P S++ A + + PK+ + A+ W +A EE+ ALE N TW + L GK VVG
Sbjct: 508 LTPLFHSYICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVG 567
Query: 909 CKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHW 968
CKWV+T K NPDGS+ R KARLVA+G+ Q G+DY +TFSPVAK SV++L+ LAA W
Sbjct: 568 CKWVFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGW 627
Query: 969 PLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECG----KVCRLKKSLYGLKQSPRSWFG 1024
L Q+DV NAFLHG+L +E+YM P G+ VCRL KSLYGLKQ+ R W+
Sbjct: 628 SLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYK 687
Query: 1025 RFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKF 1084
R S V + +S +D+T+F K + I+++VYVDD++I +DS + NLK L+ +F
Sbjct: 688 RLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEF 747
Query: 1085 QTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAE- 1143
+ KDLG ++FLG+E+ S GI + QRKY ++L + GL G KP PM+P + LT E
Sbjct: 748 KIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEM 807
Query: 1144 GVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAP 1203
G + YR LVG+L YL +TRPDI F V +SQF+S+PTD H +A ++++YLK P
Sbjct: 808 GTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNP 867
Query: 1204 GRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAE 1263
G+G++Y + + FSDADW R+S TG+C++LG +LI+WKSKKQ+VV+RSS E
Sbjct: 868 GQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTE 927
Query: 1264 AEYRAMAQTTC--MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDC 1321
+EYR++AQ TC +W+ Q+L ++ + P KL+CDN++ALH+++NPVFHERTKHIE+DC
Sbjct: 928 SEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDC 987
Query: 1322 HFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRN 1357
H +R++++ + T +V TG+QLAD+ TK L+ V++
Sbjct: 988 HTVRDQIKAGKLKTLHVPTGNQLADILTKPLHPVQS 1023
Score = 147 bits (372), Expect = 3e-35
Identities = 117/382 (30%), Positives = 177/382 (45%), Gaps = 77/382 (20%)
Query: 264 HFQQSAPNRFANNVSQSDV-IQTQPEKRTVVMSDDEFARYTQFQISQQSAS----PSSST 318
+ Q + ++ + +SQ + ++ Q T + + A T+ + Q+++ P ST
Sbjct: 12 NLQDLSQDQIQHLISQFNAQVRVQEPAATSIYTSSPTATITEHGLMAQTSTSGTIPFPST 71
Query: 319 ATFVQTGNPTV---CLSS-----TSRRWIIDSGATNHMTGDSGIFLSFSSSSIHSS---V 367
+ + N T LSS +S WIIDSGA++H+ D +F IH S V
Sbjct: 72 SLKYENNNLTFQNHTLSSLQNVLSSDAWIIDSGASSHVCSDLTMFREL----IHVSGVTV 127
Query: 368 TLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVF 427
TL +G+ V + +G STL + +VL +P F NL+S+ + ++L S FF D C
Sbjct: 128 TLPNGTRVAITHTGTICITSTLILHNVLLVPDFKFNLISVCCLVKTLSYSAHFFADCCYI 187
Query: 428 QDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSS--VSPFQLHCRLGHPSLGVLRKLC 485
Q+L+ +IGRG+ + LY+L+ + S + +S Q C L H LG+ L
Sbjct: 188 QELTRGLMIGRGKTYNNLYILETQRTSFSPSLPAASSFTGTVQDDCLLWHQRLGIRHYL- 246
Query: 486 PQLESLSNFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVT 545
H+R++Y F+T
Sbjct: 247 ------------------HYRNLY---------------------------------FLT 255
Query: 546 FVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMD 605
VDD +R TW+Y+MK++SE+ IF F I TQ+N I +RSDN KE F F+
Sbjct: 256 LVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKE---LAFTKFVK 312
Query: 606 KHGMIHQSSCIVTPQQNGVAER 627
+ GMIHQ SC TPQQN V ER
Sbjct: 313 EQGMIHQFSCAYTPQQNSVVER 334
>At1g36620 hypothetical protein
Length = 1152
Score = 499 bits (1285), Expect = e-141
Identities = 338/1126 (30%), Positives = 544/1126 (48%), Gaps = 106/1126 (9%)
Query: 15 DGENYVEWKYLVAVSLGGMGKDEHLTGSCPTNATAAA---KWKMDDKRILALLVNSVDKR 71
+GENY W L +L K + G+ ++ + +W + ++ L S+D +
Sbjct: 43 NGENYERWAKLTRNNLQAKQKLGFIDGTLTKPSSDSPDYPRWLQTNSMLVGWLYASLDPQ 102
Query: 72 TQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAE 131
Q I+ + +WE L+ + N +R++ L I +QD + +YF + K +
Sbjct: 103 VQKSISVVDNARVMWESLRTRYS-VGNASRVHQLKYDIVACRQDGQTAANYFGKLKVMWD 161
Query: 132 ELTS---LLSC---------KTKEDMLAQQKKLIALSWLSGLDQ-EFEVVRSQILSSKQV 178
+L LL+C + ++ +++ +L GLD +F R+ IL
Sbjct: 162 DLDDYEPLLTCCCNRPSCTHRVRQSQRRDHERIH--QFLMGLDAAKFGTSRTNILGRLSR 219
Query: 179 D---TLTDVFSRVMQSSFEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRGG 235
D +L ++S ++ + D A +G R G
Sbjct: 220 DDNISLDSIYSEIIAEERHLTITRSKEERVDAVGFAVQTGVNAIASVTRVNNMGP----- 274
Query: 236 RFGQIQCYSCGELGHYKN*CPN----SQQHQQHFQQSAPNR--------------FANNV 277
C CG H + C + + + + ++ R N+
Sbjct: 275 ------CTHCGRSNHSADTCFKLHGVPEWYTEKYGDTSSGRGRGRSSTPRGRGRGHGNSY 328
Query: 278 SQSDVIQTQPEKRTVVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRR 337
++ + P SD + + ++T++ +G T C+
Sbjct: 329 KANNAQTSHPSSSASEFSDIPGVSKEAWSAIRNLLKQDTATSSEKLSGK-TNCVD----- 382
Query: 338 WIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYL 397
++IDSGA++HMTG + HS V L + G + + ++ VL++
Sbjct: 383 FLIDSGASHHMTGFLDLLTEIYEIP-HSVVVLPNAKHTIATKKGTLILGANMKLTHVLFV 441
Query: 398 PQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKAST 457
P C L+S++++ R L C F CV QD +++ +IG G ES+G+Y L A++
Sbjct: 442 PDLSCTLISVARLLRELHCFAIFTDKVCVIQDRTSKMLIGVGTESNGVYHLQRAEVVATS 501
Query: 458 AYRTSSVSPFQL-HCRLGHPSLGVLRKLCPQLESLSNFS------CESCQFAKHHRSVYL 510
A + L H RLGHPS VL + P LE + S C+ C AK R+ +
Sbjct: 502 ANVVKWKTNKALWHMRLGHPSSKVLSSVLPSLEDFDSCSSDLKTICDVCVRAKQTRASFS 561
Query: 511 PRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFC 570
NK A F +H DVWGP S G YF+T VDD+SRA W++LM ++SE+ ++
Sbjct: 562 ESFNK-AEECFSFIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLAKSEVASLLQ 620
Query: 571 NFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNR 630
F A QFN + +RS+N E+ S +++ + G++HQ SC+ T QQNG ERK+R
Sbjct: 621 QFIAMASRQFNKQVKTVRSNNGTEFMS--LKSYFAERGIVHQISCVYTHQQNGRVERKHR 678
Query: 631 HLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPSCSLFPLPP- 689
H++ VA++L+FQ ++P FW ++VLTAAYLINR P+ +L+G PY +L+ PP
Sbjct: 679 HILNVARSLLFQAELPISFWEESVLTAAYLINRTPTPILDGKTPYKILYSQ------PPS 732
Query: 690 ----KVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTF 745
+VFG CF ++ K + KC+F+GY QKG+R + + VS DV F
Sbjct: 733 YASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQKGWRIYDIESQIFFVSRDVVF 792
Query: 746 FEDC-------------SFSGWLPSSFPVCESEDTFLTYI------TTSPAPQTTTGTGF 786
ED S + +PS P+ +D FL T+P P
Sbjct: 793 QEDIFPFADKKNKDTFSSPAAVIPS--PILPYDDEFLDIYQIGDVPATNPLPAIIDVNDS 850
Query: 787 QFYEKTYSRRPKSSAPPPDTQSL----PSIPLVSSDPHD-NLDLPIALRKGKRTCSYPIS 841
+ P +++PPP + L ++ L + + L TC YP++
Sbjct: 851 PPSSPIITATPAAASPPPLRRGLRQRQENVRLKDYQTYSAQCESTQTLSDNIGTCIYPMA 910
Query: 842 SYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLP 901
+YV+ SP+++ F+AA+ V P++ + A+ WR A+ E+ ALE TWD+ LP
Sbjct: 911 NYVSGEIFSPSNQHFLAAISMVDPPQTYNQAIREKEWRNAVFFEVDALEDQGTWDITKLP 970
Query: 902 AGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILIS 961
G + +G KWV+ K N +G++ R KARLVA G Q G+D+T TF+PV K+ +VR+L+
Sbjct: 971 QGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQKEGIDFTKTFAPVVKMQTVRLLLD 1030
Query: 962 LAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRS 1021
+AA W L Q+DV NAFLHGDL++++YM+ PPGF + VC+LKKS+YGLKQ+PR
Sbjct: 1031 VAAAKDWELHQMDVHNAFLHGDLKEDIYMKPPPGFKTT-DPSLVCKLKKSIYGLKQAPRC 1089
Query: 1022 WFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITG 1067
WF + S +++FG +S+ D+++F + ++VYVDD+VI G
Sbjct: 1090 WFEKLSTSLLKFGFTQSKKDYSLFTSIRGSKVLHVIVYVDDVVICG 1135
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 497 bits (1279), Expect = e-140
Identities = 243/533 (45%), Positives = 363/533 (67%), Gaps = 4/533 (0%)
Query: 842 SYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLP 901
S ++ N+ + + K+F+AA+ + P + ++A+ WR+AM E+ +L N T+ +V LP
Sbjct: 576 SKMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLP 635
Query: 902 AGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILIS 961
GK+ +G KWVY K DG++ R KARLV G Q GVDY +TF+PVAK+S+VR+ +
Sbjct: 636 PGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLG 695
Query: 962 LAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRS 1021
+AA W + Q+DV NAFLHGDL++EVYM+ P GF + KVCRL KSLYGLKQ+PR
Sbjct: 696 VAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCD-DPSKVCRLHKSLYGLKQAPRC 754
Query: 1022 WFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQ 1081
WF + S + ++G +S SD+++F + + ++VYVDD++I+GS + + K++L+
Sbjct: 755 WFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLE 814
Query: 1082 MKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLT 1141
F KDLG+LKYFLGIEV + G +SQRKYVLD+++E GL+G++P P+E KL+
Sbjct: 815 SCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLS 874
Query: 1142 AEGVP-FSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLK 1200
P SD +YRRLVG+L YL VTRP++++ V ++QFM +P HW A IR+V+YLK
Sbjct: 875 LSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYLK 934
Query: 1201 KAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARS 1260
PG+GI+ +++ + D+D+A P+ R+S TGY V LG ISWK+KKQ ++RS
Sbjct: 935 SNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTISRS 994
Query: 1261 SAEAEYRAMAQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIE 1318
SAEAEYRAMA T MW+ ++L ++G+ + M+++ D+++A+ +S NPV HERTKH+E
Sbjct: 995 SAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVE 1054
Query: 1319 VDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGMINIYA 1371
VDCHFIR+ + +I+TS+V + QLAD+ TKAL + KLG+++++A
Sbjct: 1055 VDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKLGILDVHA 1107
Score = 244 bits (624), Expect = 2e-64
Identities = 156/443 (35%), Positives = 230/443 (51%), Gaps = 15/443 (3%)
Query: 344 ATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCN 403
A++HMTG+ + S S + LADG+ G S L + SV Y+ + +
Sbjct: 169 ASHHMTGNLELLSGMRSMS-PVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESD 227
Query: 404 LLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSS 463
L+S+ ++ C V V QD +T+ + G G+ +G + G+ A+ A TS
Sbjct: 228 LISVGQMMDENHCVVQLADHFLVIQDRTTRMVTGIGKRENGSFCF-RGMENAA-AVHTSV 285
Query: 464 VSPFQL-HCRLGHPSLGVLRKLCPQL-----ESLSNFSCESCQFAKHHRSVYLPRLNKRA 517
+PF L H RLGH S ++ L +L E L N C++C AK R + P + R+
Sbjct: 286 KAPFDLWHRRLGHASDKIVNLLPRELLSSGKEILENV-CDTCMRAKQTRDTF-PLRDNRS 343
Query: 518 MSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIR 577
M F ++H DVWGP S G +YF+T VDDYSR W+YLM +SE +F A +
Sbjct: 344 MDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVE 403
Query: 578 TQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQ 637
QF+ I +RSDN E+ R + G+ H++SC+ TP QNG ERK+RH++ +A+
Sbjct: 404 RQFDTEIKTVRSDNGTEFLC--MREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIAR 461
Query: 638 ALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCF 697
AL FQ +P FW + +L+AAYLINR PS +L G PY +L+ + + +VFG C+
Sbjct: 462 ALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYS-HLRVFGSLCY 520
Query: 698 VLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFEDCSFSGWLPS 757
+ + K +S +CVF+GY QKG+R F ++ VS DV F++ F S
Sbjct: 521 AHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDV-IFQETEFPYSKMS 579
Query: 758 SFPVCESEDTFLTYITTSPAPQT 780
S FL +T P T
Sbjct: 580 CNRFTSSHKAFLAAVTAGMEPTT 602
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 484 bits (1246), Expect = e-136
Identities = 333/1048 (31%), Positives = 532/1048 (49%), Gaps = 55/1048 (5%)
Query: 338 WIIDSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPM----SS 393
W++D+G + HMT F + + SV + + ++ +V+G G + M ++
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDA-GGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTN 345
Query: 394 VLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLD-EGV 452
V Y+P+ NLLS+ +S +F ++ ++ ++ R LYLL V
Sbjct: 346 VRYIPEMDRNLLSLGTFEKS---GYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPV 402
Query: 453 SKASTAYRTSSVSPFQLHCRLGHPSLG----VLRKLCPQLESLSNF-SCESCQFAKHHRS 507
++ S + H RLGH S +L+K + +S +CE C + K R
Sbjct: 403 TEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRI 462
Query: 508 VYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGY-KYFVTFVDDYSRATWLYLMKSRSELF 566
+ + L + VHSD+WG V LG +YF++F+DDY+R +Y +K++ E F
Sbjct: 463 GFNLAQHDTREKLEY-VHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAF 521
Query: 567 TIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAE 626
F + + Q + I LR+DN E+ + F F + G++ +C TPQQNGVAE
Sbjct: 522 DKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAE 581
Query: 627 RKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIP---YSVLFPSCS 683
R NR LME ++++ +PK FWA+A T A LIN+ PS+ LN +P +S P S
Sbjct: 582 RMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYS 641
Query: 684 LFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADV 743
+ FGC F V KL+P++ K + +GY KGY+ + + +VS +V
Sbjct: 642 YL----RRFGCIAF---VHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRNV 694
Query: 744 TFFEDCSFSGWLPS-SFPVCESEDTFLTYITTSPAPQ--TTTGTGFQFYEKTYSRRPKSS 800
F E+ S+ + S E+E +Y+ + T+G E P +
Sbjct: 695 IFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPSPA 754
Query: 801 APPPDTQSLPSIPLVSSDPHDNLDLPIALRKGKRTCSYPI----SSYVTSNKLSPASKSF 856
++ + S + P L + + +RT P+ Y+ +
Sbjct: 755 TTQTYSEGVNSETDIIQSP---LSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGE 811
Query: 857 VAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTK 916
+ D +S ++ W+ AM EEM + N TW +V P ++V+G +W+Y K
Sbjct: 812 IEPADYSEAKRS----MNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFK 867
Query: 917 VN-PDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDV 975
+ P R KARLVAKGYAQ G+DY + F+PV K S+RIL+S+ A L QLDV
Sbjct: 868 LGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDV 927
Query: 976 KNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGL 1035
K AFLHG+L++++YM P G+ + +VC L KSLYGLKQ+P+ W +F+ + E G
Sbjct: 928 KTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGF 987
Query: 1036 RRSESDHTVFFKQTNKGC-ILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKY 1094
RS D + K+ + G + L++YVDD+++ + E I LK L +F KDLG K
Sbjct: 988 IRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKR 1047
Query: 1095 FLGIEVVYSK--NGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAEGVPFSDPQQ 1152
LG+E++ ++ N + +SQ Y+ +L + SK TP+ +K+ A V + +
Sbjct: 1048 ILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDE 1107
Query: 1153 -------YRRLVGKLNYLTV-TRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPG 1204
Y VG + Y + TRPD+A+PV ++S++MS P HW + +++Y+K + G
Sbjct: 1108 DYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLG 1167
Query: 1205 RGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEA 1264
+ Y+ +V + DAD A R+S TG LGG+ ISWKS +Q VVA S+ EA
Sbjct: 1168 TKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEA 1227
Query: 1265 EYRAMAQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCH 1322
EY ++ + +W+ +L E G E+ S ++++CD+Q+A+ +S N V HERTKHI+V
Sbjct: 1228 EYMSLTEAVKEAVWMKGLLKEFGYEQKS-VEIFCDSQSAIALSKNNVHHERTKHIDVRYQ 1286
Query: 1323 FIREKLQQNLISTSYVRTGDQLADVFTK 1350
+IR+ + + T AD+FTK
Sbjct: 1287 YIRDIIANGDGDVVKIDTEKNPADIFTK 1314
>At4g23160 putative protein
Length = 1240
Score = 476 bits (1225), Expect = e-134
Identities = 246/540 (45%), Positives = 355/540 (65%), Gaps = 10/540 (1%)
Query: 838 YPISSYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDL 897
+ IS +++ K+SP SF+ + P + ++A W AM++E+ A+E TW++
Sbjct: 58 HDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEI 117
Query: 898 VPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVR 957
LP K+ +GCKWVY K N DG++ R KARLVAKGY Q G+D+ +TFSPV KL+SV+
Sbjct: 118 CTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVK 177
Query: 958 ILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVA-QGEC---GKVCRLKKSLY 1013
++++++A ++ L QLD+ NAFL+GDL +E+YM+ PPG+ A QG+ VC LKKS+Y
Sbjct: 178 LILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIY 237
Query: 1014 GLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGI 1073
GLKQ+ R WF +FS ++ FG +S SDHT F K T + ++VYVDDI+I ++ +
Sbjct: 238 GLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAV 297
Query: 1074 GNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETP 1133
LK+ L+ F+ +DLG LKYFLG+E+ S GI I QRKY LD+L ETGL+G KP P
Sbjct: 298 DELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVP 357
Query: 1134 MEPGMKLTA-EGVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEAL 1192
M+P + +A G F D + YRRL+G+L YL +TR DI+F V+ +SQF +P AH +A+
Sbjct: 358 MDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAV 417
Query: 1193 IRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSK 1252
++I+ Y+K G+G+ Y M+++ FSDA + R+ST GYC+FLG +LISWKSK
Sbjct: 418 MKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSK 477
Query: 1253 KQNVVARSSAEAEYRAMAQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVF 1310
KQ VV++SSAEAEYRA++ T MW+ Q E+ + P L+CDN AA+HI++N VF
Sbjct: 478 KQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVF 537
Query: 1311 HERTKHIEVDCHFIREK-LQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGMINI 1369
HERTKHIE DCH +RE+ + Q +S S+ +Q D FT+ L+ + I + M +
Sbjct: 538 HERTKHIESDCHSVRERSVYQATLSYSFQAYDEQ--DGFTEYLSPILRGTIMYIVSMFGL 595
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 475 bits (1223), Expect = e-134
Identities = 247/537 (45%), Positives = 349/537 (63%), Gaps = 27/537 (5%)
Query: 838 YPISSYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDL 897
YP+S YV+ + S K+F+AA+ + PK +A+ W AM +E+ ALE N TWD+
Sbjct: 611 YPLSDYVSDDCFSAGHKAFLAAITANDEPKHFKEAVRIKVWNDAMFKEVDALEINKTWDI 670
Query: 898 VPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVR 957
V LP GK +G +WVY TK N DGS+ R KARLV +G Q G DY +TF+PV K+++VR
Sbjct: 671 VDLPPGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQVEGEDYNETFAPVVKMTTVR 730
Query: 958 ILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQ 1017
L+ L A N W ++Q+DV NAFLHGDL +EVYM+ PPGF KVCRL+KSLYGLKQ
Sbjct: 731 TLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGF-RHSHPDKVCRLRKSLYGLKQ 789
Query: 1018 SPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCIL-LVVYVDDIVITGSDSEGIGNL 1076
+PR WF + SD ++ FG + D++ FF T G L ++VYVDD++I G+D +
Sbjct: 790 APRCWFKKLSDALLRFGFVQGHEDYS-FFSYTRNGIELRVLVYVDDLLICGNDGYMLQKF 848
Query: 1077 KTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEP 1136
K +L F KDLG LKYFLGIEV GI +SQRKY LD++ ++G +G +P TP+E
Sbjct: 849 KEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNLGCRPALTPLEQ 908
Query: 1137 GMKL-TAEGVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRI 1195
L T +G +D + YRRLVG+L YL TRP++++ V V+SQFM +P +AH A +RI
Sbjct: 909 NHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQFMQTPREAHLAAAMRI 968
Query: 1196 VKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQN 1255
V++LK +PG+GI+ ++++ + D+D+ P R+S + Y V LGG+ ISWK+KKQ+
Sbjct: 969 VRFLKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVVLLGGSPISWKTKKQD 1028
Query: 1256 VVARSSAEAEYRAM--AQTTCMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHER 1313
V+ SSAEAEYRAM A W+ ++L E+ +NPVFHER
Sbjct: 1029 TVSHSSAEAEYRAMSVALREIKWLRKLLKEL---------------------ANPVFHER 1067
Query: 1314 TKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGMINIY 1370
TKHIE DCH +R+ ++ +I+T +VRT +QLAD+FTKAL + ++ +KLG+ +++
Sbjct: 1068 TKHIESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGRSQFLYLMSKLGIQDLH 1124
Score = 244 bits (624), Expect = 2e-64
Identities = 146/356 (41%), Positives = 201/356 (56%), Gaps = 26/356 (7%)
Query: 429 DLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQL--HCRLGHPSLGVLRKLCP 486
D ++ +IG G E DG+Y L + A+ T+ VS Q H RLGHPS VL L P
Sbjct: 52 DRFSRTLIGSGEERDGVYYLTD---VATAKIHTAKVSSDQALWHQRLGHPSFSVLSSL-P 107
Query: 487 QLESLS----NFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKY 542
L S S + SC+ C AK R V+ NK ++ F ++H DVWGP V S G Y
Sbjct: 108 VLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNK-SIECFSLIHCDVWGPYRVPSSCGAVY 166
Query: 543 FVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRT 602
F+T VDD+SRA W YL+ ++SE+ T+ NF QF + +LRSDN E+ +
Sbjct: 167 FLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEKQFGKSVKVLRSDNGTEFMC--LAS 224
Query: 603 FMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLIN 662
+ +HG++HQ+SC+ TPQQNG ERK+RH++ VA+A++FQ +P FW +AVLTAAYLIN
Sbjct: 225 YFREHGIVHQTSCVGTPQQNGRVERKHRHILNVARAILFQASLPIQFWGEAVLTAAYLIN 284
Query: 663 RMPSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSR 722
R P+++ NG+ PY +L S + +VFG C+V K +S CVF+GY
Sbjct: 285 RTPTSLHNGLSPYEILHNSKPNYE-HLRVFGSACYVHRASRDKDKFGERSRLCVFIGYPF 343
Query: 723 TQKGYRCFSPALGRYLVSADVTFFEDCSFSGWLPSSFPVCESEDTFLTYITTSPAP 778
QKG++ F +LVS DV F ED FP T +++ SPAP
Sbjct: 344 AQKGWKVFDMEKKEFLVSRDVVFREDV---------FPYAA---TNTDHVSASPAP 387
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,955,550
Number of Sequences: 26719
Number of extensions: 1359214
Number of successful extensions: 8227
Number of sequences better than 10.0: 258
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 5022
Number of HSP's gapped (non-prelim): 1608
length of query: 1371
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1260
effective length of database: 8,352,787
effective search space: 10524511620
effective search space used: 10524511620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0058b.2