BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.6
(396 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18370 disease resistance protein -like 39 0.007
At5g11250 RPP1 disease resistance protein - like 37 0.015
At3g04220 putative disease resistance protein 37 0.019
At4g26090 disease resistance protein RPS2 36 0.042
At1g08410 unknown protein 35 0.055
At5g45060 disease resistance protein-like 35 0.094
At5g41550 disease resistance protein-like 35 0.094
At5g45250 disease resistance protein RPS4 34 0.12
At5g18350 disease resistance protein -like 34 0.12
At2g14080 putative disease resistance protein 34 0.12
At4g25750 putative membrane transporter 34 0.16
At3g25510 unknown protein 33 0.21
At5g45160 GTP-binding protein-like; root hair defective 3 protei... 33 0.36
At4g36150 putative disease resistance protein 33 0.36
At1g63880 disease resistance like protein 33 0.36
At5g17970 disease resistance protein-like 32 0.47
At2g27200 putative nucleotide-binding protein 32 0.47
At3g13870 root hair defective 3 32 0.61
At1g66090 unknown protein 32 0.61
At1g56520 disease resistance like protein 32 0.61
>At5g18370 disease resistance protein -like
Length = 1210
Score = 38.5 bits (88), Expect = 0.007
Identities = 18/37 (48%), Positives = 25/37 (66%), Gaps = 1/37 (2%)
Query: 62 HIDRFLPFLT-ENTDFTVIGVIGPPGVGKSTIMNELY 97
HI R L E++D +IG++GPPG+GK+TI LY
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLY 276
>At5g11250 RPP1 disease resistance protein - like
Length = 1189
Score = 37.4 bits (85), Expect = 0.015
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 62 HIDRFLPFLTENTD-FTVIGVIGPPGVGKSTIMNELY 97
H+++ P L +TD +IG+ GPPG+GK+TI +Y
Sbjct: 242 HLEKMKPLLCLDTDEVRIIGIWGPPGIGKTTIARVVY 278
>At3g04220 putative disease resistance protein
Length = 896
Score = 37.0 bits (84), Expect = 0.019
Identities = 17/37 (45%), Positives = 24/37 (63%), Gaps = 1/37 (2%)
Query: 62 HIDRFLPFLTENTD-FTVIGVIGPPGVGKSTIMNELY 97
H+++ P L ++D IG+ GPPGVGK+TI LY
Sbjct: 243 HMEKMKPLLDIDSDEMKTIGIWGPPGVGKTTIARSLY 279
>At4g26090 disease resistance protein RPS2
Length = 909
Score = 35.8 bits (81), Expect = 0.042
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 63 IDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNEL 96
+++ L FL+E + +IGV GP GVGK+T+M +
Sbjct: 162 MEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSI 195
>At1g08410 unknown protein
Length = 589
Score = 35.4 bits (80), Expect = 0.055
Identities = 28/101 (27%), Positives = 43/101 (41%), Gaps = 13/101 (12%)
Query: 40 AQHRSRLPSVASLNLLSDSWDFHIDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNELYGF 99
AQ ++ + + ++ S SW R D V+G +G P VGKS+ +N L G
Sbjct: 281 AQEIVKVRNSRAASVSSQSWTGEYQR---------DQAVVGFVGYPNVGKSSTINALVGQ 331
Query: 100 D----SSSPGMLPPFATQSEENRAMARHCSTGIEPRISAER 136
+S+PG F T + M C + P S+ R
Sbjct: 332 KRTGVTSTPGKTKHFQTLIISDELMLCDCPGLVFPSFSSSR 372
>At5g45060 disease resistance protein-like
Length = 1165
Score = 34.7 bits (78), Expect = 0.094
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 6/43 (13%)
Query: 61 FHIDRFLPFLTENTDFT------VIGVIGPPGVGKSTIMNELY 97
F I + L L E D VIGV+G PG+GK+T++ ELY
Sbjct: 208 FGIKQRLKELEEKLDLVKYKGTRVIGVVGMPGIGKTTLVKELY 250
>At5g41550 disease resistance protein-like
Length = 1085
Score = 34.7 bits (78), Expect = 0.094
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNELYGFDSSS 103
E D +IG+ GP G+GKSTI LY SSS
Sbjct: 203 EGDDVKMIGIWGPAGIGKSTIARALYNQLSSS 234
>At5g45250 disease resistance protein RPS4
Length = 1217
Score = 34.3 bits (77), Expect = 0.12
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 78 VIGVIGPPGVGKSTIMNELY 97
+IGV+G PG+GK+T++ ELY
Sbjct: 231 IIGVVGMPGIGKTTLLKELY 250
>At5g18350 disease resistance protein -like
Length = 1193
Score = 34.3 bits (77), Expect = 0.12
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNEL 96
E+ D +IG++GPPG+GK+TI L
Sbjct: 210 ESGDVRMIGIVGPPGIGKTTIARAL 234
>At2g14080 putative disease resistance protein
Length = 1215
Score = 34.3 bits (77), Expect = 0.12
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNELYGFDSSS 103
++ + +IG+ GPPG+GK+TI+ LY SSS
Sbjct: 247 DSCEVRMIGIWGPPGIGKTTIVRFLYNQLSSS 278
>At4g25750 putative membrane transporter
Length = 577
Score = 33.9 bits (76), Expect = 0.16
Identities = 28/104 (26%), Positives = 46/104 (43%), Gaps = 2/104 (1%)
Query: 78 VIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERI 137
++ +IGP G GKST+++ L S + G + N + R S+ + + +
Sbjct: 43 ILAIIGPSGAGKSTLLDILAARTSPTSGSI--LLNSVLINPSSYRKISSYVPQHDTFFPL 100
Query: 138 ILLDTQPVFSASVLAEMMRPDGSSTVSVLSGESMSAELAHEIMG 181
+ + FSAS+L SS V+ L E LAH +G
Sbjct: 101 LTVSETFTFSASLLLPKNLSKVSSVVASLLKELNLTHLAHTRLG 144
>At3g25510 unknown protein
Length = 1981
Score = 33.5 bits (75), Expect = 0.21
Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 10/78 (12%)
Query: 36 EDDSAQHRSRLPSVASL-NLLSDSWDF--------HIDRFLPFLT-ENTDFTVIGVIGPP 85
+++ + R L VA++ S +WDF H++ L + D +IG+ GPP
Sbjct: 173 KEEIKRWRKALEGVATIAGYHSSNWDFEALIGMGAHMENMRALLRLDLDDVRMIGIWGPP 232
Query: 86 GVGKSTIMNELYGFDSSS 103
G+GK+TI L S S
Sbjct: 233 GIGKTTIARFLLSQVSKS 250
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 62 HIDRF-LPFLTENTDFTVIGVIGPPGVGKSTIMNELYGFDSSS 103
H++R L ++ + +IG+ GP G+GK+TI L+ S S
Sbjct: 1430 HMERMELLLCLDSDEVRMIGIWGPSGIGKTTIARFLFSQFSDS 1472
>At5g45160 GTP-binding protein-like; root hair defective 3
protein-like
Length = 834
Score = 32.7 bits (73), Expect = 0.36
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 76 FTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEP 130
+ V+ ++GP GKST++N L+ +S + FA +S+ + + GIEP
Sbjct: 40 YAVVAIMGPQSSGKSTLLNHLF---KTSFREMDAFAGRSQTTKGIWMARCVGIEP 91
>At4g36150 putative disease resistance protein
Length = 1179
Score = 32.7 bits (73), Expect = 0.36
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 5/42 (11%)
Query: 61 FHIDRFLPFLTENTDFT-----VIGVIGPPGVGKSTIMNELY 97
F I+ L L E DF IGV+G PG+GK+T+ + LY
Sbjct: 216 FGIETRLKQLEEKLDFECKDTLTIGVVGMPGIGKTTLTSMLY 257
>At1g63880 disease resistance like protein
Length = 1017
Score = 32.7 bits (73), Expect = 0.36
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNELYG 98
+N + ++ + GP G+GK+TI LYG
Sbjct: 204 DNVEVKIVAIAGPAGIGKTTIARALYG 230
>At5g17970 disease resistance protein-like
Length = 780
Score = 32.3 bits (72), Expect = 0.47
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNELYGFDSSS 103
E+ + +IGV GP G+GK+TI LY SSS
Sbjct: 207 ESNEVKMIGVWGPAGIGKTTITRILYNQLSSS 238
>At2g27200 putative nucleotide-binding protein
Length = 537
Score = 32.3 bits (72), Expect = 0.47
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 4/63 (6%)
Query: 78 VIGVIGPPGVGKSTIMNELYGFD----SSSPGMLPPFATQSEENRAMARHCSTGIEPRIS 133
V+G +G P VGKS+ +N L G +S+PG F T M C + P S
Sbjct: 306 VVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEDLMLCDCPGLVFPSFS 365
Query: 134 AER 136
+ R
Sbjct: 366 SSR 368
>At3g13870 root hair defective 3
Length = 802
Score = 32.0 bits (71), Expect = 0.61
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 76 FTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEP 130
+ V+ ++GP GKST++N L+G + + F +S+ + + GIEP
Sbjct: 37 YAVVSIMGPQSSGKSTLLNHLFGTNFRE---MDAFRGRSQTTKGIWIARCAGIEP 88
>At1g66090 unknown protein
Length = 429
Score = 32.0 bits (71), Expect = 0.61
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 37 DDSAQHRSRLPSVASLNL-LSDSWDF--------HIDRFLPFLTENTD-FTVIGVIGPPG 86
DD A ++ + S L ++S DF H+ + L+ + D ++G+ GP G
Sbjct: 171 DDEANMIEKIATDVSEKLNATESKDFDEMVGIKAHLTKIESLLSLDYDKVKIVGISGPAG 230
Query: 87 VGKSTIMNELYGFDSSS 103
+GKSTI L+ SSS
Sbjct: 231 IGKSTIARALHNLLSSS 247
>At1g56520 disease resistance like protein
Length = 897
Score = 32.0 bits (71), Expect = 0.61
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNELYG 98
+N ++G+ GP G+GKSTI L+G
Sbjct: 203 KNDGVKIVGISGPAGIGKSTIATALHG 229
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,415,681
Number of Sequences: 26719
Number of extensions: 414910
Number of successful extensions: 1485
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1398
Number of HSP's gapped (non-prelim): 112
length of query: 396
length of database: 11,318,596
effective HSP length: 101
effective length of query: 295
effective length of database: 8,619,977
effective search space: 2542893215
effective search space used: 2542893215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0057b.6