BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052a.1
(387 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29090 putative protein 137 8e-33
At2g45230 putative non-LTR retroelement reverse transcriptase 127 1e-29
At2g01840 putative non-LTR retroelement reverse transcriptase 118 5e-27
At3g09510 putative non-LTR reverse transcriptase 114 7e-26
At2g31520 putative non-LTR retroelement reverse transcriptase 114 7e-26
At2g25550 putative non-LTR retroelement reverse transcriptase 113 2e-25
At1g47910 reverse transcriptase, putative 101 8e-22
At3g45550 putative protein 98 7e-21
At2g17910 putative non-LTR retroelement reverse transcriptase 94 1e-19
At3g25270 hypothetical protein 94 2e-19
At2g02650 putative reverse transcriptase 93 3e-19
At2g15510 putative non-LTR retroelement reverse transcriptase 92 4e-19
At2g15540 putative non-LTR retroelement reverse transcriptase 91 1e-18
At2g16680 putative non-LTR retroelement reverse transcriptase 85 6e-17
At3g31420 hypothetical protein 84 2e-16
At2g17610 putative non-LTR retroelement reverse transcriptase 83 2e-16
At5g20800 putative protein 82 4e-16
At2g34320 putative non-LTR retroelement reverse transcriptase 81 1e-15
At1g29650 reverse transcriptase, putative 77 2e-14
At1g27870 hypothetical protein 70 2e-12
>At4g29090 putative protein
Length = 575
Score = 137 bits (346), Expect = 8e-33
Identities = 105/383 (27%), Positives = 176/383 (45%), Gaps = 28/383 (7%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDIL---FWPESSNGHYTSKAGYVFLRKLASI 63
WR+D+IE +F ++I + GGR IL W +S+G YT K+GY L ++ +
Sbjct: 182 WRKDVIEMLFPEVERKLIGELR---PGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINK 238
Query: 64 EA-PSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCL 122
+ P + +P + K W + P+ + W+ +S LP+ L RH+ + C
Sbjct: 239 RSSPQEVSEPSLNPIYQK-IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIR 297
Query: 123 CSGENETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFAD------FWAWVVEQGDSEFIS 176
C ET HL C A+ SS+ + + +AD +W + + G+ ++
Sbjct: 298 CPSCKETVNHLLFKCTFARLTWAISSIPIPLGG--EWADSIYVNLYWVFNLGNGNPQWEK 355
Query: 177 TVQTI---IYAIWEARNQVQFQQRTFSVTGVLRRVA------AMNSASQKSDGGPQTG-S 226
Q + ++ +W+ RN++ F+ R F+ VLRR + + ++ PQ S
Sbjct: 356 ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRS 415
Query: 227 RPARWRRPQPGTIKCNFDASF-RGGGTAGLGMVARNSEGEAMAAACSFPVPISSPLLAEA 285
RWR P +KCN DA++ R G+G V RN +GE + S L AE
Sbjct: 416 SCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAEL 475
Query: 286 MAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFEFVSL 345
AMRW + ++ ++ E+D L +E L I+D + L+S F V
Sbjct: 476 EAMRWAVLSLSRFQYNYVIFESDSQVLIEILNN-DEIWPSLKPTIQDLQRLLSQFTEVKF 534
Query: 346 CFVRRTGNAVADFLARNANTYAN 368
F+ R GN +A+ +AR + ++ N
Sbjct: 535 VFIPREGNTLAERVARESLSFLN 557
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 127 bits (318), Expect = 1e-29
Identities = 101/380 (26%), Positives = 162/380 (42%), Gaps = 16/380 (4%)
Query: 3 DRHCWRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLAS 62
D W +L+ +F +T E IL++ RD W S +GHY+ K+GY + ++ +
Sbjct: 975 DGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIIN 1034
Query: 63 IEA-PSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCC 121
P P F + W P+ WR ++ L + L RH+ + C
Sbjct: 1035 QRNNPQEVLQPSLDPIFQQ-IWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCV 1093
Query: 122 LCSGENETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADF-------WAWVVEQGDSEF 174
C ET HL CP A+ S L A + F + +S+
Sbjct: 1094 RCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDH 1153
Query: 175 ISTVQTIIYAIWEARNQVQFQQRTFSVTGV-LRRVAAMNSASQKSDGGPQ----TGSRPA 229
+ + I++ +W+ RN + F+ R F+ V L+ M++ + + + PQ T R
Sbjct: 1154 HALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRCV 1213
Query: 230 RWRRPQPGTIKCNFDASF-RGGGTAGLGMVARNSEGEAMAAACSFPVPISSPLLAEAMAM 288
+W+ P G +KCN D ++ + G G+G V RN G + S L E A+
Sbjct: 1214 KWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEAL 1273
Query: 289 RWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFEFVSLCFV 348
RW + + ++ E+D L + + E D L+ I+D R L+ FE V F
Sbjct: 1274 RWAVLSLSRFNYRRVIFESDSQYLVSLIQN-EMDIPSLAPRIQDIRNLLRHFEEVKFQFT 1332
Query: 349 RRTGNAVADFLARNANTYAN 368
RR GN VAD AR + + N
Sbjct: 1333 RREGNNVADRTARESLSLMN 1352
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 118 bits (296), Expect = 5e-27
Identities = 102/402 (25%), Positives = 168/402 (41%), Gaps = 32/402 (7%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLASIEAP 66
W + E V +P ++ S+ LS RD W + N YT ++GY + E
Sbjct: 1314 WDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEE 1373
Query: 67 SSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSGE 126
+ G P + W P+ K WR +SG L +L R++ DP C C
Sbjct: 1374 IINPLEGDVP-LKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNA 1432
Query: 127 NETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADFW---AWVVEQGDSEFISTVQT--- 180
+ET H+ C A+ V +++ S + + F D ++ QG +
Sbjct: 1433 DETINHIIFTCSYAQVVWRSANFS--GSNRLCFTDNLEENIRLILQGKKNQNLPILNGLM 1490
Query: 181 ---IIYAIWEARNQVQFQQ---------------RTFSVTGVLRRVAAMNSASQKSDGGP 222
I++ +W++RN+ FQQ T V ++ A ++ +Q +D
Sbjct: 1491 PFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNTAQSND--- 1547
Query: 223 QTGSRPARWRRPQPGTIKCNFDASF-RGGGTAGLGMVARNSEGEAMAAACSFPVPISSPL 281
+ SR +W P G +KCNFD+ + +G G + R+ G + + C+ S L
Sbjct: 1548 RPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSAL 1607
Query: 282 LAEAMAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFE 341
AEA+ +Q+ G+ + E D L L N ED L L+ D R ++
Sbjct: 1608 QAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINK-TEDHHLLETLLYDIRFWMTKLP 1666
Query: 342 FVSLCFVRRTGNAVADFLARNANTYANMVWVEEVPLAVLPLF 383
F S+ +V R N AD L + AN+ +++ VP L L+
Sbjct: 1667 FSSIGYVNRERNLAADKLTKYANSMSSLYETFHVPPRWLQLY 1708
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 114 bits (286), Expect = 7e-26
Identities = 106/383 (27%), Positives = 153/383 (39%), Gaps = 30/383 (7%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLASIEAP 66
W I S I I L+ + D + W ++ G YT ++GY L S P
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 67 SSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSGE 126
+ + G S W +P+ K WRA+S L +RL R + +DP C C E
Sbjct: 148 AINPPHG-SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRE 206
Query: 127 NETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADFWAWVVEQGDSEFISTVQT------ 180
NE+ H CP A S SL + + + DF E+ S ++ VQ
Sbjct: 207 NESINHALFTCPFATMAWRLSDSSL-IRNQLMSNDF-----EENISNILNFVQDTTMSDF 260
Query: 181 -------IIYAIWEARNQVQFQQRTFSVTGVLRRVAAMN------SASQKSDGGP--QTG 225
+I+ IW+ARN V F + S + + A + S K P Q
Sbjct: 261 HKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIA 320
Query: 226 SRPARWRRPQPGTIKCNFDASFRGGG-TAGLGMVARNSEGEAMAAACSFPVPISSPLLAE 284
WR P +KCNFDA F A G + RN G ++ S+PL AE
Sbjct: 321 ENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAE 380
Query: 285 AMAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFEFVS 344
A+ +Q G+ + +E DC L N I S L+ + D + F +
Sbjct: 381 TKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI-SFHSSLANHLEDISFWANKFASIQ 439
Query: 345 LCFVRRTGNAVADFLARNANTYA 367
F+RR GN +A LA+ TY+
Sbjct: 440 FGFIRRKGNKLAHVLAKYGCTYS 462
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 114 bits (286), Expect = 7e-26
Identities = 106/383 (27%), Positives = 154/383 (39%), Gaps = 30/383 (7%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLASIEAP 66
W I S I I L+ + D + W ++ G YT ++GY L S P
Sbjct: 1128 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 1187
Query: 67 SSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSGE 126
+ + G S W +P+ K WRA+S L +RL R + +DP C C E
Sbjct: 1188 AINPPHG-SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRE 1246
Query: 127 NETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADFWAWVVEQGDSEFISTVQT------ 180
NE+ H CP A + S SL + + + DF E+ S ++ VQ
Sbjct: 1247 NESINHALFTCPFATMAWWLSDSSL-IRNQLMSNDF-----EENISNILNFVQDTTMSDF 1300
Query: 181 -------IIYAIWEARNQVQFQQRTFSVTGVLRRVAAMN------SASQKSDGGP--QTG 225
+I+ IW+ARN V F + S + + A + S K P Q
Sbjct: 1301 HKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIA 1360
Query: 226 SRPARWRRPQPGTIKCNFDASFRGGG-TAGLGMVARNSEGEAMAAACSFPVPISSPLLAE 284
WR P +KCNFDA F A G + RN G ++ S+PL AE
Sbjct: 1361 ENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAE 1420
Query: 285 AMAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFEFVS 344
A+ +Q G+ + +E DC L N I S L+ + D + F +
Sbjct: 1421 TKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI-SFHSSLANHLEDISFWANKFASIQ 1479
Query: 345 LCFVRRTGNAVADFLARNANTYA 367
F+RR GN +A LA+ TY+
Sbjct: 1480 FGFIRRKGNKLAHVLAKYGCTYS 1502
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 113 bits (283), Expect = 2e-25
Identities = 105/383 (27%), Positives = 153/383 (39%), Gaps = 30/383 (7%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLASIEAP 66
W I S I I L+ + D + W ++ G YT ++GY L S P
Sbjct: 1354 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 1413
Query: 67 SSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSGE 126
+ + G S W +P+ K WRA+S L +RL R + +DP C C E
Sbjct: 1414 AINPPHG-SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRE 1472
Query: 127 NETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADFWAWVVEQGDSEFISTVQT------ 180
NE+ H CP A S SL + + + DF E+ S ++ VQ
Sbjct: 1473 NESINHALFTCPFATMAWRLSDSSL-IRNQLMSNDF-----EENISNILNFVQDTTMSDF 1526
Query: 181 -------IIYAIWEARNQVQFQQRTFSVTGVLRRVAAMN------SASQKSDGGP--QTG 225
+I+ IW+ARN V F + S + + A + S K P Q
Sbjct: 1527 HKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIA 1586
Query: 226 SRPARWRRPQPGTIKCNFDASFRGGG-TAGLGMVARNSEGEAMAAACSFPVPISSPLLAE 284
WR P +KCNFDA F A G + RN G ++ S+PL AE
Sbjct: 1587 ENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAE 1646
Query: 285 AMAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFEFVS 344
A+ +Q G+ + +E DC L N I S L+ + D + F +
Sbjct: 1647 TKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI-SFHSSLANHLEDISFWANKFASIQ 1705
Query: 345 LCFVRRTGNAVADFLARNANTYA 367
F+R+ GN +A LA+ TY+
Sbjct: 1706 FGFIRKKGNKLAHVLAKYGCTYS 1728
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 101 bits (251), Expect = 8e-22
Identities = 97/397 (24%), Positives = 160/397 (39%), Gaps = 30/397 (7%)
Query: 1 DHDRHCWRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKL 60
D + W DL++ +F P +I ++P+ D L W + G+YT K+GY
Sbjct: 750 DSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGY----HT 805
Query: 61 ASIEAPSSSTAVGFSPRFWKGF-WATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPG 119
A ++ +T +G K + W P+ + W+ +SG +P+ + L +R + D G
Sbjct: 806 ARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKG 865
Query: 120 CCLCSGENETAEHLFMLCPAAKQV*YASSLS-----LRVDSFIAFADFWAWVVEQG-DSE 173
C C E+ H C A+Q+ S + +S D W + G DS
Sbjct: 866 CVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDS- 924
Query: 174 FISTVQTIIYAIWEARNQVQFQQRTFSVTGVLRRVAAMNSASQKSD--------GGPQTG 225
+ II+ IW+ARN+ F+ +L + Q++ G
Sbjct: 925 --APYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSID 982
Query: 226 SRPARWRRPQPGT----IKCNFDASFRGGGT-AGLGMVARNSEGEAMAAACSFPVPISSP 280
SR R R T +C D S++ +G G +S GE+ + SP
Sbjct: 983 SR-IRVRDVSQDTTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSP 1041
Query: 281 LLAEAMAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAF 340
L E A+ W M+ I + TDC +L + E ++ S+ + + + F
Sbjct: 1042 LHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAF-SVYLEELQSDREEF 1100
Query: 341 EFVSLCFVRRTGNAVADFLARNANTYANMV-WVEEVP 376
SL + R+ N AD LAR T + V +V +P
Sbjct: 1101 TNFSLSLISRSANVKADKLARKIRTVPHHVTYVNNIP 1137
>At3g45550 putative protein
Length = 851
Score = 98.2 bits (243), Expect = 7e-21
Identities = 77/267 (28%), Positives = 108/267 (39%), Gaps = 29/267 (10%)
Query: 2 HDRHCWRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLA 61
H R CW ++ S + I I LS D L W +S G YT ++GY
Sbjct: 589 HSR-CWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLSTHDP 647
Query: 62 SIEAPSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCC 121
S P+ + G S W +P+ K WR +S LP DRL R + +DPGC
Sbjct: 648 SNTIPTMAKPHG-SVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCP 706
Query: 122 LCSGENETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADFWAWVVEQGDSEFISTVQT- 180
C ENE+ H CP A S L S ++ +E S + +Q
Sbjct: 707 RCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNN------IEDNISNILLLLQNT 760
Query: 181 ------------IIYAIWEARNQVQFQ--QRTFSVTGVLRRVAAMNSASQKSDGGPQ--- 223
+++ IW+ARN V F + + S+T V + + GP+
Sbjct: 761 TITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLP 820
Query: 224 ---TGSRPARWRRPQPGTIKCNFDASF 247
T + W +PQ IKCNFDASF
Sbjct: 821 KRTTAAGNTTWVKPQMPYIKCNFDASF 847
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 94.4 bits (233), Expect = 1e-19
Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 17/300 (5%)
Query: 7 WRRDLIEFVFSPSTAEIILSI-PLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLASIEA 65
W +++ +F EIIL PL D W S NG Y+ K GY FL K
Sbjct: 950 WNLNMLRDLFPWKDVEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRL 1007
Query: 66 PSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSG 125
+ + W P+ + W+A+ G +P+ DRL R + D GC +C
Sbjct: 1008 YQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDT 1067
Query: 126 ENETAEHLFMLCPAAKQV*YASSLSLRVDSF--IAFADFWAWV--VEQGD----SEFIST 177
ENET H+ CP A+QV + LS F + + + +Q D F+S
Sbjct: 1068 ENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVS- 1126
Query: 178 VQTIIYAIWEARNQVQFQQR-TFSVTGVLRRVAAMNS--ASQKSDGGPQTGSRPARWRRP 234
I++ +W+ RN + F+ + + + T V + A + ++Q + + +W P
Sbjct: 1127 -PWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPP 1185
Query: 235 QPGTIKCNFDASF-RGGGTAGLGMVARNSEGEAMAAACSFPVPISSPLLAEAMAMRWTMQ 293
PG +KCN ++ + +G V R+S+G+ + + + SP A+ + W ++
Sbjct: 1186 LPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALE 1245
>At3g25270 hypothetical protein
Length = 343
Score = 93.6 bits (231), Expect = 2e-19
Identities = 81/301 (26%), Positives = 127/301 (41%), Gaps = 23/301 (7%)
Query: 83 WATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSGENETAEHLFMLCPAAKQ 142
W P+ K W+ +SG L D L RRH+ P C C E+ET++HLF C A+Q
Sbjct: 19 WKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQ 78
Query: 143 V*YASSL---SLRVDSFIAFAD---FWAWVVEQGDSEFISTVQTIIYAIWEARNQVQFQQ 196
V AS + LR + + + + I++ +W++RNQ+ FQQ
Sbjct: 79 VWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQ 138
Query: 197 RTFSVTGVLRR--------------VAAMNSASQKSDGGPQTGSRPARWRRPQPGTIKCN 242
++ S L+R V ++N S T +R +W+RP IK N
Sbjct: 139 KSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMAR-TKWQRPPSTWIKYN 197
Query: 243 FDASF-RGGGTAGLGMVARNSEGEAMAAACSFPVPISSPLLAEAMAMRWTMQLAIDLGFH 301
+D +F A G + R+ G M + + S L +E A+ MQ A G+
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYR 257
Query: 302 *IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFEFVSLCFVRRTGNAVADFLAR 361
++ E D + + + + IR+ R FE +V RT N AD LA+
Sbjct: 258 KVIFEGDSKQVEELMNNEKLNFGRFN-WIREGRFWQKRFEEAVFKWVPRTNNQPADILAK 316
Query: 362 N 362
+
Sbjct: 317 H 317
>At2g02650 putative reverse transcriptase
Length = 365
Score = 92.8 bits (229), Expect = 3e-19
Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 28/324 (8%)
Query: 62 SIEAPSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCC 121
+I+ P ST V + W P+ K WR ++G L RL R++D DP C
Sbjct: 23 AIQPPPGSTEVK------QAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQ 76
Query: 122 LCSGENETAEHLFMLCPAAKQV*YASSLSL--RVDSFIAFADFWAWVVEQGDSEFISTVQ 179
C E ET H+ CP + V ++++ + + +F D +++ ++ +++
Sbjct: 77 RCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLD 136
Query: 180 T-----IIYAIWEARNQVQFQQRTFSV-----TGVLRRVAAMNSASQKSDGGPQTGSRP- 228
I++ +W++RN FQQ+ S G+ +N+ + + P
Sbjct: 137 RFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPI 196
Query: 229 -------ARWRRPQPGTIKCNFDASF-RGGGTAGLGMVARNSEGEAMAAACSFPVPISSP 280
++W P G +KCNFD+ + +G G R G + + +
Sbjct: 197 QTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCS 256
Query: 281 LLAEAMAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAF 340
L AEA+ +Q+ G + E+D +L ED S L LI D R +
Sbjct: 257 LHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINN-GEDHSLLGTLIYDIRHWMLKL 315
Query: 341 EFVSLCFVRRTGNAVADFLARNAN 364
+ SL FV R N+ AD LA + +
Sbjct: 316 PYCSLEFVNRERNSAADALASHVH 339
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 92.4 bits (228), Expect = 4e-19
Identities = 66/280 (23%), Positives = 120/280 (42%), Gaps = 20/280 (7%)
Query: 6 CWRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLASIEA 65
CW+RDL+E +F P+ E+I +N D W + G Y+ K+GY + ++
Sbjct: 747 CWKRDLLEELFYPTDVELITKRNPVVNMD-DFWVWLHAKTGEYSVKSGYWLAFQSNKLDL 805
Query: 66 PSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSG 125
+ + + + W+T + P+ K WR +S LP+ D++ RR + +DP C +C
Sbjct: 806 IQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGD 865
Query: 126 ENETAEHLFMLCPAAKQV*YASSLSLRVDSF---IAFADFWAWVVEQGDSEFISTV---- 178
E E+ H+ C A+QV S + F FA+ ++ E + +
Sbjct: 866 EGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIFANI-QFLFELKKMILVPDLVKRS 924
Query: 179 -QTIIYAIWEARNQVQFQQRTFSVTGVLRRV---------AAMNSASQKSDGGPQTGSRP 228
+++ +W+ RN++ F TF + ++ A +S+ G +
Sbjct: 925 WPWVLWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQAQSQIRVSESEEGQRVIPFT 984
Query: 229 ARWRRPQPGTIKCNFDASFRG-GGTAGLGMVARNSEGEAM 267
W P G +KCN +++ G G V R+ G +
Sbjct: 985 HSWEPPPEGWVKCNIGSAWSGKKKVCGGAWVLRDEHGSVI 1024
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 90.9 bits (224), Expect = 1e-18
Identities = 91/376 (24%), Positives = 155/376 (41%), Gaps = 30/376 (7%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLA--SIE 64
W+ ++ + PS +IL I S D W + +G+YT K+GY R L+ + +
Sbjct: 852 WKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGYWAARDLSRPTCD 911
Query: 65 APSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCS 124
P +V W + K W+ +SG L RLF RH+ + C C
Sbjct: 912 LPFQGPSVS---ALQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCG 968
Query: 125 GENETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADFW--AWVVEQGD-----SEFIST 177
E E+ HL LCP ++Q+ S + F + F+ +++ +G + +
Sbjct: 969 AEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEI 1028
Query: 178 VQTIIYAIWEARNQVQFQQRTFSVTGVLRRVAAMNSASQKSDGGPQTGSRPARWRRPQPG 237
I++ IW++RN+ F+ S +L + A Q+++ Q S+ P P
Sbjct: 1029 FPWILWYIWKSRNRFIFENVIESPQVIL------DFAIQEANVWKQANSKEVATEYPPPQ 1082
Query: 238 TIK---------CNFDASFRGGGT-AGLGMVARNSEGEAMAAACSFPVPISSPLLAEAMA 287
+ C FDAS+ T +G G V + + + S + SPL AE +
Sbjct: 1083 VVPANLPPTRNVCQFDASWHLKDTLSGHGWVLVDQDIVLLLGLKSARKSL-SPLHAEVDS 1141
Query: 288 MRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYLSILIRDCRLLISAFEFVSLCF 347
+ W M+ I LG +D + + E ++++ L L+ F S+ F
Sbjct: 1142 LLWAMECMISLGVSDCSFASDSADFISLLENPSEWPTFVAEL-ATFSSLVCFFPSFSIKF 1200
Query: 348 VRRTGNAVADFLARNA 363
R N AD L++ A
Sbjct: 1201 FSRIYNVRADCLSKKA 1216
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 85.1 bits (209), Expect = 6e-17
Identities = 72/273 (26%), Positives = 113/273 (41%), Gaps = 16/273 (5%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYV-FLRKLASIEA 65
W + +F ++I+ L D W ++NG YT K+GY R+
Sbjct: 924 WNLKKLTELFHEKDVQLIMH-QRPLISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLF 982
Query: 66 PSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCLCSG 125
+ +P F K W+ +P+ K W+A+ G L + DRL R + GC C
Sbjct: 983 KEADVYPSVNPLFDK-VWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKE 1041
Query: 126 ENETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADFWAWVVEQGDSEF-----ISTVQT 180
E ET HL CP A+QV S + F V Q F + TV
Sbjct: 1042 EIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSP 1101
Query: 181 -IIYAIWEARNQVQFQQRTFSVTGVLRRV----AAMNSASQKSDGGPQTGSRPARWRRPQ 235
+++ IW+ RN+ FQ + + ++ + +A +KS GG +W P
Sbjct: 1102 WLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKSSGGVSPSEH--KWNPPP 1159
Query: 236 PGTIKCNFDASF-RGGGTAGLGMVARNSEGEAM 267
G +KCN ++ R AG+ V R+S G+ +
Sbjct: 1160 AGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVL 1192
>At3g31420 hypothetical protein
Length = 1491
Score = 83.6 bits (205), Expect = 2e-16
Identities = 81/352 (23%), Positives = 138/352 (39%), Gaps = 41/352 (11%)
Query: 36 DILFWPESSNGHYTSKAGYVFLRKLASIEAPSSSTAVGFSPRFWKGFWATSALPRCKETC 95
D++ W + +G YT K+ Y L + + W T P+ K C
Sbjct: 1125 DLIGWHYTKDGMYTVKSAYWLATHLPGTTGTHPPPG---DIKLKQLLWKTKTAPKIKHFC 1181
Query: 96 WRAISGYLPLRDRLFRRHVDVDPGCCLCSGENETAEHLFMLCPAAKQV*YASSLSLRVDS 155
W+ +SG + + L RH++ C C + ET++HLF C AK + L
Sbjct: 1182 WKILSGAIATGEMLRYRHINKQSICKRCCRDEETSQHLFFECDYAKATWRGAGL-----P 1236
Query: 156 FIAFADFWAWVVEQGDSEFISTVQT----------IIYAIWEARNQVQFQQR--TFSVTG 203
+ F D + E+ + F T I++ +W +RN + FQQ+ + VT
Sbjct: 1237 NLIFQDSIVTLEEKFRAMFTFNPSTTNYWRQLPFWILWRLWRSRNILTFQQKHIPWEVTV 1296
Query: 204 VLR------------RVAAMNSASQKSDGGPQTGSRPARWRRPQPGTIKCNFDASFRGGG 251
L RV +N S++ RW RP G KCN+D S+
Sbjct: 1297 QLAKQDALEWQDIEDRVQVINPLSRRHSNRYAAN----RWTRPVCGWKKCNYDGSYSTII 1352
Query: 252 TAGLGMVARNSEGEAMAAACSFPVPISSPLLAEAMAMRWTMQLAIDLGFH*IVLETDCLN 311
+ G V R+ G+ + + ++ L + A+ MQ G + E D +
Sbjct: 1353 NSKAGWVIRDEHGQFIGGGQAKGKHTNNALESALQALIIAMQSCWSHGHTKVCFEGDNIE 1412
Query: 312 LFNAWRTIEEDRSYLSIL--IRDCRLLISAFEFVSLCFVRRTGNAVADFLAR 361
++ + + E ++ + IRD + F+ ++ R N AD LA+
Sbjct: 1413 VY---QILNEGKARFDVYNWIRDIQAWKRRFQECRFLWINRRNNKPADTLAK 1461
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 83.2 bits (204), Expect = 2e-16
Identities = 77/317 (24%), Positives = 131/317 (41%), Gaps = 25/317 (7%)
Query: 7 WRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKL-----A 61
W DL+ + + I +I S+ G D + W + +G+Y+ K+GY LRKL A
Sbjct: 425 WNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHA 484
Query: 62 SIEAPSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCC 121
S+ +P+ +A WK +A P+ K WR+ LP L RR + D C
Sbjct: 485 SLPSPNEVSAQTVFTNIWK----QNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQ 540
Query: 122 LCSGENETAEHLFMLCPAAKQV*YASSLSLRVDSFIAFADF-----WAWVVEQGDSEFIS 176
C +E HL C +K++ + + L + F + Q + +S
Sbjct: 541 RCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNLESIQKLNQSARKDVS 600
Query: 177 TVQTIIYAIWEARNQVQFQQRTFSVTGVLRRVAAMNSASQKSDGGPQTGSRPARWRRPQP 236
I + IW+ RN + F + +S+ +++ ++S + R+PQ
Sbjct: 601 LFPFIGWRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQWKES-----LNCNEQQQRKPQ- 654
Query: 237 GTIKCNFDASFRGGGTAGLGMVARNSEGEAMAAACSFPVPISSPLLAEAMAMRWTMQLAI 296
+ + + GG L + S+ + + S P S+PL AEA A++ M
Sbjct: 655 --LHDSHNNKCYGGHLKTLRTL---SKAQFVLRGMSSIPPTSTPLEAEAEALKLAMIHLQ 709
Query: 297 DLGFH*IVLETDCLNLF 313
LG+ I+ D LF
Sbjct: 710 RLGYEDIIFHGDVAALF 726
>At5g20800 putative protein
Length = 359
Score = 82.4 bits (202), Expect = 4e-16
Identities = 71/314 (22%), Positives = 127/314 (39%), Gaps = 24/314 (7%)
Query: 1 DHDRHCWRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKL 60
D + W+ D++ +F P+ +I ++ + D L W + +G YT K+GY ++
Sbjct: 48 DRRSNFWKMDILHEIFDPNDIPLISALHVGAPNKEDTLGWHFTKSGKYTFKSGY-HTSRI 106
Query: 61 ASIEAPSSSTAVGFSPRFWKGF-WATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPG 119
I+ ++ + +G K + W P+ + W+ ++ +P+R+ L +R ++ D G
Sbjct: 107 EYID--TNLSFIGPEITLLKAYSWKVQCPPKLRHFLWQILASCVPVRENLRKRGINCDIG 164
Query: 120 CCLCSGENETAEHLFMLCPAAKQV*YASSLSLRV-----DSFIAFADFWAWVVEQGDSEF 174
C C +T H C A+Q+ S + + DS D W V+ F
Sbjct: 165 CARCGATEKTINHTLFQCHPARQIWALSQIPTVIGIFPSDSIYENLDHLFWRVQSAVDSF 224
Query: 175 ISTVQTIIYAIWEARNQVQFQQRTFSVTGVLRRVAAMNSASQKSDGGPQTGSRPARWRRP 234
+ II+ IW+ARN F +L +A + S KS P +
Sbjct: 225 --SYPWIIWYIWKARNAKLFDNVDKDPLDIL-SLAEKEAQSWKSAQVELHSENPVSFLES 281
Query: 235 QP-----------GTIKCNFDASFRGGGT-AGLGMVARNSEGEAMAAACSFPVPISSPLL 282
+ ++C D S++ +GLG +S E + + SPL
Sbjct: 282 RTRVRNISEDNVYAGLRCFVDGSWKESDQFSGLGWFCTSSNEETSSMGTTNLRRSLSPLH 341
Query: 283 AEAMAMRWTMQLAI 296
E A+ W M+ I
Sbjct: 342 TEVEALLWGMKCMI 355
>At2g34320 putative non-LTR retroelement reverse transcriptase
Length = 292
Score = 80.9 bits (198), Expect = 1e-15
Identities = 69/279 (24%), Positives = 118/279 (41%), Gaps = 30/279 (10%)
Query: 112 RHVDVDPGCCLCSGENETAEHLFMLCPAAKQV*YASSLSLR-----VDSFIAFADFWAWV 166
RH+ + C C ET HL C A+ V S + DS A +W
Sbjct: 4 RHLFREASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANL-YWVLN 62
Query: 167 VEQGD---SEFISTVQTIIYAIWEARNQVQFQQRTFSVTGVLRRV-------AAMNSASQ 216
+E + + V +++ +W++RN++ F+ + + VLRR +
Sbjct: 63 LEVEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEG 122
Query: 217 KSDGGPQTGSRPARWRRPQPGTIKCNFDASFR-GGGTAGLGMVARNSEGEAMAAACSFPV 275
K+ G + +W+ P +KCN DA+++ G+G + RN G +
Sbjct: 123 KASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALP 182
Query: 276 PISSPLLAEAMAMRWTMQLAIDLGFH*IVLETDC---LNLFNA---WRTIEEDRSYLSIL 329
+ L AE A+RW + + I+ E+D +NL N+ W T++
Sbjct: 183 RTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPTLQP-------A 235
Query: 330 IRDCRLLISAFEFVSLCFVRRTGNAVADFLARNANTYAN 368
+ D + L+ FE V F R GN VAD +AR + +++N
Sbjct: 236 LEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFSN 274
>At1g29650 reverse transcriptase, putative
Length = 1557
Score = 77.0 bits (188), Expect = 2e-14
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 3 DRHCWRRDLIEFVFSPSTAEIILSIPLSLNGGRDILFWPESSNGHYTSKAGYVFLRKLAS 62
D CW RDL++ +F ++I ++ D W S +G Y+ K+GY + +
Sbjct: 1242 DGRCWNRDLLQDLFFQVDIDLICKKKPVVDMD-DFWVWLHSKSGEYSVKSGYWLVFQSNK 1300
Query: 63 IEAPSSSTAVGFSPRFWKGFWATSALPRCKETCWRAISGYLPLRDRLFRRHVDVDPGCCL 122
E + + + W+TS P+ K WR +S LP+ D++ RR ++VDP C +
Sbjct: 1301 PELLFKACRQPSTNGLKEKIWSTSTFPKIKLFLWRILSAALPVADQILRRGMNVDPCCQI 1360
Query: 123 CSGENETAEHLFMLCPAAKQ 142
C E E+ H+ C A+Q
Sbjct: 1361 CGQEGESINHVLFTCSVARQ 1380
>At1g27870 hypothetical protein
Length = 213
Score = 70.1 bits (170), Expect = 2e-12
Identities = 55/175 (31%), Positives = 81/175 (45%), Gaps = 14/175 (8%)
Query: 208 VAAMNSASQKSDGGPQTGSRPARWRRPQPGTIKCNFDASFRGGGT-AGLGMVARNSEGEA 266
VA +N+ S+ G + RWRRP+ G IKCNFD SF G + G V R+S G
Sbjct: 33 VAQINTRSR----GVREEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSY 88
Query: 267 MAAACSFPVPISSPLLAEAMAMRWTMQLAIDLGFH*IVLETDCLNLFNAWRTIEEDRSYL 326
+ A + + + L +E A+ +MQ G+ + E D LF+ I + Y
Sbjct: 89 LLAGQAIGRKVDNALESEIQALIISMQHCWSHGYKRVCFEGDNKMLFD---LINGSKVYF 145
Query: 327 SI--LIRDCRLLISAFEFVSLCFVRRTGNAVADFLAR----NANTYANMVWVEEV 375
+ IRD + FE + ++RR N AD LA+ N + + N WV V
Sbjct: 146 GVHNWIRDIHWWLRKFESIHFNWIRRHHNTPADILAKAPLQNQSLFLNHFWVPNV 200
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.327 0.138 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,634,007
Number of Sequences: 26719
Number of extensions: 351046
Number of successful extensions: 1120
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 131
length of query: 387
length of database: 11,318,596
effective HSP length: 101
effective length of query: 286
effective length of database: 8,619,977
effective search space: 2465313422
effective search space used: 2465313422
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0052a.1