BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.4
(422 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05940 unknown protein 672 0.0
At5g26740 unknown protein 651 0.0
At1g77220 unknown protei 161 6e-40
At4g38360 unknown protein 147 8e-36
At4g21570 unknown protein 117 9e-27
At1g11200 unknown protein 112 3e-25
At1g23070 hypothetical protein 90 3e-18
At1g03060 putataive transport protein 33 0.39
At5g33420 replication protein A1-like 32 0.86
At5g47490 putative protein 30 1.9
At4g01320 CAAX prenyl protease like protein 30 1.9
At1g24570 unknown protein 30 2.5
At1g20390 hypothetical protein 29 5.6
At3g13150 hypothetical protein 28 7.3
At3g61690 unknown protein 28 9.5
At2g06220 hypothetical protein 28 9.5
>At3g05940 unknown protein
Length = 422
Score = 672 bits (1735), Expect = 0.0
Identities = 327/421 (77%), Positives = 370/421 (87%), Gaps = 3/421 (0%)
Query: 1 MAEHLPIYLYIVAFLCTIGAVSLALLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFL 60
MA+ LPIYL I+AFLCT+GA++LAL HIYKHL+NYTEP YQRYIVRIVFMVPVYALMSFL
Sbjct: 1 MADLLPIYLIILAFLCTVGAIALALFHIYKHLLNYTEPIYQRYIVRIVFMVPVYALMSFL 60
Query: 61 SLVLPASSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSWFLMTCCL 120
+LVLP SSIYFNSIREVYEAWVIYNFLSLCLAWVGGPG+VV+SL+GR LKPSW LMTCC+
Sbjct: 61 ALVLPKSSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGSVVISLTGRSLKPSWHLMTCCI 120
Query: 121 SPIPLDGRFIRKCKQGGLQFVILKPILVAVTLILYVKGKYKDGNFSPKQSYLYLTIIYTF 180
P+PLDGRFIR+CKQG LQFVILKPILVAVTL+LY KGKYKDGNFSP QSYLYLTIIYT
Sbjct: 121 PPLPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYAKGKYKDGNFSPDQSYLYLTIIYTI 180
Query: 181 SYTMALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSKFIKDADE 240
SYT+ALYAL LFYVACKDLL PFNPVPKF+IIKSVVFLTYWQGVLVFL AKS FI+D +E
Sbjct: 181 SYTVALYALVLFYVACKDLLQPFNPVPKFVIIKSVVFLTYWQGVLVFLFAKSGFIRDEEE 240
Query: 241 AAILQDFIICVEMLVAAVGHFYAFPYKEYAGANIGGVSRGFTASLGHALMLNDFYHDTVH 300
AA+ Q+FIICVEML+AA HFYAFPYKEYA AN+GG +R F+ SL HALMLNDFYHDTVH
Sbjct: 241 AALFQNFIICVEMLIAAAAHFYAFPYKEYAEANVGG-ARSFSGSLAHALMLNDFYHDTVH 299
Query: 301 QFAPTYHDYVLYNHGE-GEEGTRKYRSRTFVPLGPEMDAVRRNKHMFENKVDDIQLSRFS 359
QFAPTYHDYVLYNH + GEEGTRKYR+RTFVP G EMDAVR+NKHMF NK+D + +S
Sbjct: 300 QFAPTYHDYVLYNHNDGGEEGTRKYRARTFVPTGQEMDAVRKNKHMFGNKIDGVSVSS-Q 358
Query: 360 SSNSSTPSNSGPISDVSHSDAMKSSLLVDVSNSVSVPYDLTLIDLDLSDHPEKVPAVDKA 419
SS +STP SG D + ++MKSSLLVD S+SVS YD++LID+D+S +P KVP+ + +
Sbjct: 359 SSETSTPKTSGVTYDPARPESMKSSLLVDASDSVSTMYDMSLIDIDISSYPSKVPSANIS 418
Query: 420 G 420
G
Sbjct: 419 G 419
>At5g26740 unknown protein
Length = 422
Score = 651 bits (1679), Expect = 0.0
Identities = 315/423 (74%), Positives = 364/423 (85%), Gaps = 2/423 (0%)
Query: 1 MAEHLPIYLYIVAFLCTIGAVSLALLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFL 60
MA+ +P YL IVAFLCT+GA++LA+ HIY+HL+NYTEPTYQRYIVRI+FMVPVYA MSFL
Sbjct: 1 MADLIPFYLNIVAFLCTVGAIALAIFHIYRHLLNYTEPTYQRYIVRIIFMVPVYAFMSFL 60
Query: 61 SLVLPASSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSWFLMTCCL 120
SLVLP SSIYF+SIREVYEAWVIYNFLSLCLAWVGGPG+VVLSLSGR LKPSW LMTCC
Sbjct: 61 SLVLPKSSIYFDSIREVYEAWVIYNFLSLCLAWVGGPGSVVLSLSGRSLKPSWSLMTCCF 120
Query: 121 SPIPLDGRFIRKCKQGGLQFVILKPILVAVTLILYVKGKYKDGNFSPKQSYLYLTIIYTF 180
P+ LDGRFIR+CKQG LQFVILKPILVAVTL+LY KGKYKDGNF+P Q+YLYLTIIYT
Sbjct: 121 PPLTLDGRFIRRCKQGCLQFVILKPILVAVTLVLYAKGKYKDGNFNPDQAYLYLTIIYTI 180
Query: 181 SYTMALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSKFIKDADE 240
SYT+ALYAL LFY+AC+DLL PFNPVPKF+IIKSVVFLTYWQGVLVFLAAKS FIK A+
Sbjct: 181 SYTVALYALVLFYMACRDLLQPFNPVPKFVIIKSVVFLTYWQGVLVFLAAKSGFIKSAEA 240
Query: 241 AAILQDFIICVEMLVAAVGHFYAFPYKEYAGANIGGVSRGFTASLGHALMLNDFYHDTVH 300
AA Q+FIICVEML+AA HFYAFPYKEYAGAN+GG S F+ SL HA+ LNDFYHDTVH
Sbjct: 241 AAHFQNFIICVEMLIAAACHFYAFPYKEYAGANVGG-SGSFSGSLSHAVKLNDFYHDTVH 299
Query: 301 QFAPTYHDYVLYNHGE-GEEGTRKYRSRTFVPLGPEMDAVRRNKHMFENKVDDIQLSRFS 359
QFAPTYHDYVLYNH + G+EGT+KYRSRTFVP G EMDA+R+NK ++ NK+D + +S
Sbjct: 300 QFAPTYHDYVLYNHQDGGDEGTKKYRSRTFVPTGQEMDAMRKNKPVYANKIDGVSVSSSL 359
Query: 360 SSNSSTPSNSGPISDVSHSDAMKSSLLVDVSNSVSVPYDLTLIDLDLSDHPEKVPAVDKA 419
SS +S+P +S SD + SDA+KSSLLVD S+S+ YD++LID+DLS P VP+ ++
Sbjct: 360 SSEASSPKSSSVTSDPARSDAVKSSLLVDASDSLETMYDMSLIDIDLSSFPSNVPSASES 419
Query: 420 GTR 422
G R
Sbjct: 420 GPR 422
>At1g77220 unknown protei
Length = 484
Score = 161 bits (408), Expect = 6e-40
Identities = 95/269 (35%), Positives = 144/269 (53%), Gaps = 19/269 (7%)
Query: 20 AVSLALLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFLSLVLPASSIYFNSIREVYE 79
A+ L + I++HL +Y +P Q++++ ++ MVPVYA+ SFLSLV ++ IR+ YE
Sbjct: 53 AILLPMYLIFEHLASYNQPEEQKFLIGLILMVPVYAVESFLSLVNSEAAFNCEVIRDCYE 112
Query: 80 AWVIYNFLSLCLAWVGGPGAV--------VLSLSGRVLKPSW--------FLMTCCLSPI 123
A+ +Y F +A + G V++ S +L+ + F M C +
Sbjct: 113 AFALYCFERYLIACLDGEERTIEFMEQQTVITQSTPLLEGTCSYGVVEHPFPMNCFVKDW 172
Query: 124 PLDGRFIRKCKQGGLQFVILKPILVAVTLILYVKGKYKDGNFSPKQSYLYLTIIYTFSYT 183
L +F K G +Q++ILK I + +IL G Y +G F+ Y YL ++ FS T
Sbjct: 173 SLGPQFYHAVKIGIVQYMILKMICALLAMILEAFGVYGEGKFAWNYGYPYLAVVLNFSQT 232
Query: 184 MALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSKFIKDA---DE 240
ALY L FY KD L P P+ KF+ KS+VFLT+WQG++V +K + +
Sbjct: 233 WALYCLVQFYNVIKDKLAPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSMGLVKGSLAKEL 292
Query: 241 AAILQDFIICVEMLVAAVGHFYAFPYKEY 269
+QD+IIC+EM +AAV H Y FP Y
Sbjct: 293 KTRIQDYIICIEMGIAAVVHLYVFPAAPY 321
>At4g38360 unknown protein
Length = 479
Score = 147 bits (372), Expect = 8e-36
Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 29/286 (10%)
Query: 6 PIYLYIVAFLCTIGAVSLALLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFLSLVLP 65
P + +A + +SL+L ++ HL Y P Q++++ ++ MVP Y++ SF SLV P
Sbjct: 17 PAWASFMAGAFLVLTLSLSLFLVFDHLSTYKNPEEQKFLIGVILMVPCYSIESFASLVKP 76
Query: 66 ASSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVV--LSLSGR---------------V 108
+ S+ +R+ YE++ +Y F +A +GG + + GR +
Sbjct: 77 SISVDCGILRDCYESFAMYCFGRYLVACIGGEERTIEFMERQGRKSFKTPLLDHKDEKGI 136
Query: 109 LKPSWFLMTCCLSPIPLDGRFIRKCKQGGLQFVILKPILVAVTLILYVKGKYKDGNFSPK 168
+K F M L P L F + K +I+K + LIL G Y +G F
Sbjct: 137 IKHP-FPMNLFLKPWRLSPWFYQVVK------MIIKSLTALTALILEAFGVYCEGEFKWG 189
Query: 169 QSYLYLTIIYTFSYTMALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYWQGVLVFL 228
Y YL ++ FS + ALY L FY A KD L P+ KF+ KS+VFLT+WQGV + L
Sbjct: 190 CGYPYLAVVLNFSQSWALYCLVQFYGATKDELAHIQPLAKFLTFKSIVFLTWWQGVAIAL 249
Query: 229 AA-----KSKFIKDADEAAILQDFIICVEMLVAAVGHFYAFPYKEY 269
+ KS + +QDFIIC+EM +A+V H Y FP K Y
Sbjct: 250 LSSLGLFKSSIAQSLQLKTSVQDFIICIEMGIASVVHLYVFPAKPY 295
>At4g21570 unknown protein
Length = 294
Score = 117 bits (294), Expect = 9e-27
Identities = 80/278 (28%), Positives = 137/278 (48%), Gaps = 24/278 (8%)
Query: 12 VAFLCTIGAVSLALLH----IYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFLSLVLPAS 67
+ F C+ +V L L + +HL ++ P Q+ I+ IV M P+YA++SF+ L+
Sbjct: 12 ITFYCSAFSVLLTLHFTIQLVSQHLFHWKNPKEQKAILIIVLMAPIYAVVSFIGLLEVKG 71
Query: 68 S----IYFNSIREVYEAWVIYNFLSLCLAWVG---GPGAVVLSLSGRVLKPSWFLMTCCL 120
S ++ SI+E YEA VI FL+L +++ + + GR + S+ +
Sbjct: 72 SETFFLFLESIKECYEALVIAKFLALMYSYLNISMSKNILPDGIKGREIHHSFPMTLFQP 131
Query: 121 SPIPLDGRFIRKCKQGGLQFVILKPILVAVTLILYVKGKYKDGNFSPKQSYLYLTIIYTF 180
+ LD ++ K QFV+++P+ + + L + G Y P TII F
Sbjct: 132 HVVRLDRHTLKLLKYWTWQFVVIRPVCSTLMIALQLIGFY------PSWLSWTFTIIVNF 185
Query: 181 SYTMALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSKFIKD--- 237
S ++ALY+L +FY L P NP+ KF+ IK +VF +WQG+ + + FIK
Sbjct: 186 SVSLALYSLVIFYHVFAKELAPHNPLAKFLCIKGIVFFVFWQGIALDILVAMGFIKSHHF 245
Query: 238 ----ADEAAILQDFIICVEMLVAAVGHFYAFPYKEYAG 271
+Q+ ++C+EM++ A +A+ Y+G
Sbjct: 246 WLEVEQIQEAIQNVLVCLEMVIFAAVQKHAYHAGPYSG 283
>At1g11200 unknown protein
Length = 295
Score = 112 bits (281), Expect = 3e-25
Identities = 80/276 (28%), Positives = 138/276 (49%), Gaps = 32/276 (11%)
Query: 16 CTIGAVSLALLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFLSLVLPASS----IYF 71
C + ++ + + +HL + +P QR I+ IV M PVYA+ SF+ L+ S ++
Sbjct: 20 CVLLSMHFTMQLVSQHLFYWKKPNEQRAILIIVLMAPVYAINSFVGLLDAKGSKPFFMFL 79
Query: 72 NSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSW--------FLMTCCLSPI 123
++++E YEA VI FL+L ++V +S+S R++ + F MT +
Sbjct: 80 DAVKECYEALVIAKFLALMYSYVN------ISMSARIIPDEFKGREIHHSFPMTLFVPRT 133
Query: 124 P-LDGRFIRKCKQGGLQFVILKPILVAVTLILYVKGKYKDGNFSPKQSYLYLTIIYTFSY 182
LD +++ KQ QF I++P+ + + L + G Y P T I S
Sbjct: 134 THLDYLTLKQLKQWTWQFCIIRPVCSILMITLQILGIY------PVWLSWIFTAILNVSV 187
Query: 183 TMALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSKFIK------ 236
++ALY+L FY L P P+ KF+ +K +VF +WQG+++ + IK
Sbjct: 188 SLALYSLVKFYHVFAKELEPHKPLTKFMCVKGIVFFCFWQGIVLKILVGLGLIKSHHFWL 247
Query: 237 DADE-AAILQDFIICVEMLVAAVGHFYAFPYKEYAG 271
+ D+ LQ+ ++C+EM+V ++ YAF Y+G
Sbjct: 248 EVDQLEEALQNVLVCLEMIVFSIIQQYAFHVAPYSG 283
>At1g23070 hypothetical protein
Length = 379
Score = 89.7 bits (221), Expect = 3e-18
Identities = 85/289 (29%), Positives = 121/289 (41%), Gaps = 57/289 (19%)
Query: 4 HLPIYLYIVAFLCTIGAVSLALLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFLSLV 63
HLP L I T+ A+ L+L I +HL YT P + +SL
Sbjct: 13 HLPS-LIIGGSFATV-AICLSLYSILQHLRFYTNP-------------------AIISLS 51
Query: 64 LPASSIYFNSIREVYEAWVIYNF---LSLCLAWVGGPGAVVLSLSGRVLKP--------- 111
S+ + +R YEA+ +Y+F L CL + G VV L KP
Sbjct: 52 NSKFSLPCDILRNCYEAFALYSFGSYLVACLGELCGERRVVEYLENESKKPLLEEGANES 111
Query: 112 -------SWFLMTCCLSPIPLDGRFIRKCKQGGLQFV---ILKPILVAVTLILYVKGKYK 161
S++ C P L K G +Q+V ILK +T +L + G Y
Sbjct: 112 KKKKKKNSFWKFLC--DPYVLGRELFVIEKFGLVQYVSQMILKTFCAFLTFLLELLGVYG 169
Query: 162 DGNFSPKQSYLYLTIIYTFSYTMALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYW 221
DG F + + AL+ L FY + L P+ KFI K++VF T+W
Sbjct: 170 DGEFK-----------WYYGQMWALFCLVQFYNVTHERLKEIKPLAKFISFKAIVFATWW 218
Query: 222 QGVLVFLAAKSKFI-KDADEAAILQDFIICVEMLVAAVGHFYAFPYKEY 269
QG + L + K+ LQDF+IC+EM +AAV H + FP + Y
Sbjct: 219 QGFGIALLCYYGILPKEGRFQNGLQDFLICIEMAIAAVAHLFVFPAEPY 267
>At1g03060 putataive transport protein
Length = 3601
Score = 32.7 bits (73), Expect = 0.39
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 12/71 (16%)
Query: 345 MFENKVDDIQLSRFSSSNSSTPSN------SGPISDVSHSDAMKSSLLVDVSNSVSVPYD 398
+FEN +D+ LSRF +SS S+ S P SH +++ + V+ SN +
Sbjct: 1510 IFENSYEDLSLSRFRYDSSSVGSHGDMDDFSVPKDSFSHLSELETDIPVETSNCI----- 1564
Query: 399 LTLIDLDLSDH 409
L + D+ +H
Sbjct: 1565 -VLSNADMVEH 1574
>At5g33420 replication protein A1-like
Length = 370
Score = 31.6 bits (70), Expect = 0.86
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 368 NSGPISDVSHSDAMKSSLLVDVSNSVSVPYDLTLIDLDLSDHPE 411
N +DV + D + ++LV SVS +D++L+++DL DHP+
Sbjct: 80 NLADFNDVINEDGLNENILVG-HRSVSSAFDMSLLEIDL-DHPQ 121
>At5g47490 putative protein
Length = 1361
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/61 (34%), Positives = 27/61 (43%), Gaps = 1/61 (1%)
Query: 318 EEGTRKYRSRTFVPLGPEMDAVRRNKHMFENKVDDIQLSRFSSSNSSTPS-NSGPISDVS 376
E G +P P + A + N +ENK D I + SS TPS NS I +S
Sbjct: 1134 ERGVEPPAEEAALPPPPTIGAFQNNSLGYENKSDMIPSNGNWSSGGPTPSENSSGIPPIS 1193
Query: 377 H 377
H
Sbjct: 1194 H 1194
>At4g01320 CAAX prenyl protease like protein
Length = 424
Score = 30.4 bits (67), Expect = 1.9
Identities = 23/80 (28%), Positives = 37/80 (45%), Gaps = 13/80 (16%)
Query: 129 FIRKCKQGGLQFVILKPILVAVTLILYVKGKYKDGNFSPKQSYLYLTI-IYTFSYTMALY 187
FIR +G VIL P +VA + + KG P YL I ++ F + ++L
Sbjct: 148 FIRDMIKGTFLSVILGPPIVAAIIFIVQKG-------GP-----YLAIYLWAFMFILSLV 195
Query: 188 ALALFYVACKDLLHPFNPVP 207
+ ++ V L + F P+P
Sbjct: 196 MMTIYPVLIAPLFNKFTPLP 215
>At1g24570 unknown protein
Length = 339
Score = 30.0 bits (66), Expect = 2.5
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 299 VHQFAPTYHDYVLYNHGEGEEGTRKYRSRTFVPLGPEMDAVRRNKHMFENKVDDIQLSRF 358
VHQF P+ L N G+ + G ++ D + MFEN+V+ + F
Sbjct: 278 VHQFIPS-----LGNQGKADNGKAPWQG--------VRDRCQMEWKMFENRVEAAEKDYF 324
Query: 359 SSSNSSTPSNS 369
S +PSNS
Sbjct: 325 RSLQVESPSNS 335
>At1g20390 hypothetical protein
Length = 1791
Score = 28.9 bits (63), Expect = 5.6
Identities = 24/111 (21%), Positives = 46/111 (40%), Gaps = 5/111 (4%)
Query: 311 LYNHGEGEEGTRKYRSRT-FVPLGPEMDAVRRNKHMFENKVDDIQLSRFSSSNSSTPSNS 369
L N + ++YR + V P + RN N+ I + TP N
Sbjct: 514 LQNCSDSVRSIKQYRKKAEMVVAWPSSTSTTRNP----NQSAPISFTDVDLEGLDTPHND 569
Query: 370 GPISDVSHSDAMKSSLLVDVSNSVSVPYDLTLIDLDLSDHPEKVPAVDKAG 420
+ ++ SD+ + +L+D +SV + + L ++++D K + AG
Sbjct: 570 PLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAG 620
>At3g13150 hypothetical protein
Length = 551
Score = 28.5 bits (62), Expect = 7.3
Identities = 19/54 (35%), Positives = 27/54 (49%)
Query: 360 SSNSSTPSNSGPISDVSHSDAMKSSLLVDVSNSVSVPYDLTLIDLDLSDHPEKV 413
SS SS+P +S +S S + ++S D SNSVS D + SD+ V
Sbjct: 482 SSFSSSPDSSSSVSSSLFSSSRENSSSPDYSNSVSSSLDYSGSVSSSSDYSSSV 535
>At3g61690 unknown protein
Length = 1388
Score = 28.1 bits (61), Expect = 9.5
Identities = 36/119 (30%), Positives = 50/119 (41%), Gaps = 13/119 (10%)
Query: 290 MLNDFYHDTVHQFAPTYHDYVLYN-HGEGEEGTRKYRSRTFVPLGPE------MDAVRRN 342
++N+F+ H FA T L HGE +R RSR G +D++R+
Sbjct: 483 LVNNFHGR--HIFARTRSSPELTETHGEALLQSR--RSRAAPDAGKRQTNSTRVDSIRKK 538
Query: 343 KHMFENKVDDIQLSRFSSSNSSTPSNSGPISDVSHSDAMKSSLLVDVSNSVSVPYDLTL 401
E ++ S SSS TPS P S S A+ S D SVSV D ++
Sbjct: 539 SLESETLSSGVRYSADSSSVRHTPSPQSPDSTADMSSAVNS--YYDEVGSVSVNEDFSV 595
>At2g06220 hypothetical protein
Length = 428
Score = 28.1 bits (61), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (48%)
Query: 367 SNSGPISDVSHSDAMKSSLLVDVSNSVSVPYDLTLIDLDLSDHPEKVPAVDKA 419
S P +VS S + S + +D +V VP + D+ + P+K +++A
Sbjct: 15 STERPSEEVSTSQTVSSEIEIDGDAAVEVPTEPAETDVSANKTPKKTAEIEEA 67
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.141 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,553,985
Number of Sequences: 26719
Number of extensions: 417392
Number of successful extensions: 1329
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1297
Number of HSP's gapped (non-prelim): 18
length of query: 422
length of database: 11,318,596
effective HSP length: 102
effective length of query: 320
effective length of database: 8,593,258
effective search space: 2749842560
effective search space used: 2749842560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0048.4