BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.8
(1555 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11970 hypothetical protein 1090 0.0
At1g36590 hypothetical protein 1085 0.0
At1g35370 hypothetical protein 980 0.0
At2g10780 pseudogene 682 0.0
At2g05610 putative retroelement pol polyprotein 630 e-180
At2g04670 putative retroelement pol polyprotein 622 e-178
At2g14650 putative retroelement pol polyprotein 604 e-172
At4g10580 putative reverse-transcriptase -like protein 498 e-140
At2g06890 putative retroelement integrase 486 e-137
At3g31970 hypothetical protein 426 e-119
At4g07850 putative polyprotein 392 e-108
At2g07660 putative retroelement pol polyprotein 370 e-102
At4g16910 retrotransposon like protein 364 e-100
At1g37060 Athila retroelment ORF 1, putative 304 3e-82
At2g14640 putative retroelement pol polyprotein 295 2e-79
At4g08100 putative polyprotein 283 5e-76
At4g03650 putative reverse transcriptase 275 1e-73
At4g07830 putative reverse transcriptase 263 5e-70
At1g20390 hypothetical protein 221 3e-57
At4g04230 putative transposon protein 191 4e-48
>At3g11970 hypothetical protein
Length = 1499
Score = 1090 bits (2820), Expect = 0.0
Identities = 613/1531 (40%), Positives = 899/1531 (58%), Gaps = 83/1531 (5%)
Query: 8 MESRVDNLERSITEMKEEAHEQFEELRRLFMSRERRRTRGRSNTPRHRRVSRDHNSVSLA 67
++SRV LE ++ E +E +QF +L + +SR + R R S+
Sbjct: 22 LDSRVTRLETTVAEQHKEMMKQFADLYAV-LSRSTAGKMVDEQSTLDRSAPRSSQSME-- 78
Query: 68 RSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGNDAYGWITKVERFFRL 127
+ G R + +H + ++L + ++D P F+G W+ KVE FF +
Sbjct: 79 -NRSGYPDPYRDARHQQVRSDHFNAYNNLTRLG--KIDFPRFDGTRLKEWLFKVEEFFGV 135
Query: 128 SRVEETEKVEMVMIAMEDRALSWFQWWEEQA----PVRAWEPFKQALIRRFQPELVQNPF 183
E KV+M I + A +W Q + + + W+ + + L RF+ + +P
Sbjct: 136 DSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKERFEDD-CDDPM 194
Query: 184 GPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSEDLAD 243
L ++ +++Y + FEL+ + N E L V+L GL + + ++++ + +
Sbjct: 195 AELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHVRMFQPQTVRH 253
Query: 244 LMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPNVSYQSKG 303
+ E+ + K+ W STN G
Sbjct: 254 CLFLGKTYEKAH-------PKKPANTTW----------STNRSAPTG------------- 283
Query: 304 AGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQ--RLTQTELQERSRRGLCFKCGEK 361
G ++ KEG T++ G K Q +++Q E+ +R +GLC+ C EK
Sbjct: 284 --------GYNKYQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEMSDRRSKGLCYFCDEK 335
Query: 362 WGREHICAKKNFQLILIEGEDEEEE--EEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNR 419
+ EH K QL ++ ++E E+ EE+ + ++ + Q+S+N+ G+ +
Sbjct: 336 YTPEHYLVHKKTQLFRMDVDEEFEDAREELVNDDDE-------HMPQISVNAVSGIAGYK 388
Query: 420 SFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVC 479
+ +VKG ++ I IL+D G+T NF+ A+L V V V +G + R G
Sbjct: 389 TMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKV 448
Query: 480 KNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQ 539
+ ++Q ++ L G ++VLG+ WL +LG I F+ L ++++ N QK+ +
Sbjct: 449 TDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLH 508
Query: 540 GEPSFCKVAATWKSIKKTKHDEGEEYFLS-YECSEEEPTANVTIPELWIKL--------- 589
G S + ++K + D+ + L E SE TI L +L
Sbjct: 509 GLTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEV 568
Query: 590 LTEFPEVFQEPKELPPKRAT-DHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAG 648
L E+P++F EP LPP R +H I L EG+ N RPYRY +QKNEI+KLV+++L G
Sbjct: 569 LNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNG 628
Query: 649 IIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFS 708
++ S+SP++SP +LVKKKDG WR CVDYR LN +T+ D FPIP+I++L+DE+G A IFS
Sbjct: 629 TVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFS 688
Query: 709 KLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRK 768
K+DL++GYHQ+RM +DI KTAF+TH GH+EYLV+PFGLTNAP+TFQ LMN + +P+LRK
Sbjct: 689 KIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRK 748
Query: 769 FVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEG 828
FVLVFF DIL+YS++++ H++HL++V +V+R N L A KC+F ++ YLGH IS +G
Sbjct: 749 FVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQG 808
Query: 829 VAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSA 888
+ DP+KIK + WP P +K LRGFLGL GYYRRFVR++ +A PL+ L K + F W+A
Sbjct: 809 IETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTA 868
Query: 889 GATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSER 948
A QAF+ LK + PVL++P F K FV+ETDA G+G+GAVLMQ G P+AY+S+ L +
Sbjct: 869 VAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGK 928
Query: 949 AQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLM 1008
S+YE+EL+AV+ AV+KWRHYLL FI+ TDQ+SL++L EQRL QQ+W+ KL+
Sbjct: 929 QLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLL 988
Query: 1009 GFDFEIKYKPGIENKAADALSR----KLQFSAISSVQCEDWEDLETEILADDKYQKIIQE 1064
FD+EI+Y+ G EN ADALSR ++ A++ V+C+ +D++ D + Q II
Sbjct: 989 EFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITA 1048
Query: 1065 ITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISA 1124
+ + + L K++IV+P IL H S VGGH+G T++R+
Sbjct: 1049 LQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKG 1108
Query: 1125 LFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTM 1184
LF+W+GM DIQ Y++ C CQ+ K + G LQPLPIP +WS++SMDFI GLP +
Sbjct: 1109 LFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSG 1168
Query: 1185 GKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSF 1244
GK I+VVVDR +K AHF+ALSHPY+A VA ++ + KLHG PTSIVSDRD VF S F
Sbjct: 1169 GKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEF 1228
Query: 1245 WSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYN 1304
W E F L G LK +SAYHPQ+DGQTEVVNRC+ETYLRC+ +P+ W KWL+ AE+WYN
Sbjct: 1229 WREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYN 1288
Query: 1305 TNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNR 1364
TNYHS+ + TPF+ +YG+ PPV + + V V + ER L LK +L +AQ+R
Sbjct: 1289 TNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHR 1348
Query: 1365 MKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYK 1424
MKQ A++HR + + ++GD VY+K+QPY+ +S+ R NQKLSP+++GPY +I++ VAYK
Sbjct: 1349 MKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYK 1408
Query: 1425 LQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEWELKVEPESIID----SRAGDK 1480
L LP SQVHPVFHVS LK + LP M + +E KV PE +++ +R G K
Sbjct: 1409 LALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFE-KV-PEKVVERKMVNRQG-K 1465
Query: 1481 GTVEVLVKWKNMPEFENSWEDYTELLEQFPE 1511
+VLVKW N P E +WE +L + FPE
Sbjct: 1466 AVTKVLVKWSNEPLEEATWEFLFDLQKTFPE 1496
>At1g36590 hypothetical protein
Length = 1499
Score = 1085 bits (2807), Expect = 0.0
Identities = 612/1529 (40%), Positives = 896/1529 (58%), Gaps = 79/1529 (5%)
Query: 8 MESRVDNLERSITEMKEEAHEQFEELRRLFMSRERRRTRGRSNTPRHRRVSRDHNSVSLA 67
++SRV LE ++ E +E +QF +L + +SR + R R S+
Sbjct: 22 LDSRVTRLETTVAEQHKEMMKQFADLYAV-LSRSTAGKMVDEQSTLDRSAPRSSQSME-- 78
Query: 68 RSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGNDAYGWITKVERFFRL 127
+ G R + +H + ++L + ++D P F+G W+ KVE FF +
Sbjct: 79 -NRSGYLDPYRDARHQQVRSDHFNAYNNLTRLG--KIDFPRFDGTRLKEWLFKVEEFFGV 135
Query: 128 SRVEETEKVEMVMIAMEDRALSWFQWWEEQAP----VRAWEPFKQALIRRFQPELVQNPF 183
E KV+M I + A +W Q + + + W+ + + L RF+ + +P
Sbjct: 136 DSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKERFEDDC-DDPM 194
Query: 184 GPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSEDLAD 243
L ++ +++Y + FEL+ + N E L V+L GL + + ++++ + +
Sbjct: 195 AELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHVRMFQPQTVRH 253
Query: 244 LMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPNVSYQSKG 303
+ E+ + K+ W STN G
Sbjct: 254 CLFLGKTYEKAHL-------KKPANTTW----------STNRSAPTG------------- 283
Query: 304 AGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQ--RLTQTELQERSRRGLCFKCGEK 361
G ++ KEG T++ G K Q +++Q E+ +R +GLC+ C EK
Sbjct: 284 --------GYNKYQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEMSDRRSKGLCYFCDEK 335
Query: 362 WGREHICAKKNFQLILIEGEDEEEEEEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSF 421
+ EH K QL ++ ++E E+ +D E + Q+S+N+ G+ ++
Sbjct: 336 YTPEHYLVHKKTQLFRMDVDEEFEDAREELVNDDDEHMP-----QISVNAVSGIAGYKTM 390
Query: 422 KVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVCKN 481
+VKG ++ I IL+D G+T NF+ A+L V V V +G + R G +
Sbjct: 391 RVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTD 450
Query: 482 LKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGE 541
++Q ++ L G ++VLG+ WL +LG I F+ L ++++ N QK+ + G
Sbjct: 451 FSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGL 510
Query: 542 PSFCKVAATWKSIKKTKHDEGEEYFLSY-ECSEEEPTANVTIPELWIKL---------LT 591
S + ++K + D+ + L E SE TI L +L L
Sbjct: 511 TSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLN 570
Query: 592 EFPEVFQEPKELPPKRAT-DHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGII 650
E+P++F EP LPP R +H I L EG+ N RPYRY +QKNEI+KLV+++L G +
Sbjct: 571 EYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTV 630
Query: 651 RHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKL 710
+ S+SP++SP +LVKKKDG WR CVDYR LN +T+ D FPIP+I++L+DE+G A IFSK+
Sbjct: 631 QASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKI 690
Query: 711 DLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFV 770
DL++GYHQ+RM +DI KTAF+TH GH+EYLV+PFGLTNAP+TFQ LMN + +P+LRKFV
Sbjct: 691 DLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFV 750
Query: 771 LVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVA 830
LVFF DIL+YS++++ H++HL++V +V+R N L A KC+F ++ YLGH IS +G+
Sbjct: 751 LVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIE 810
Query: 831 ADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGA 890
DP+KIK + WP P +K LRGFLGL GYYRRFVR++ +A PL+ L K + F W+A A
Sbjct: 811 TDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVA 870
Query: 891 TQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQ 950
QAF+ LK + PVL++P F K FV+ETDA G+G+GAVLMQ G P+AY+S+ L +
Sbjct: 871 QQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQL 930
Query: 951 AKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGF 1010
S+YE+EL+AV+ AV+KWRHYLL FI+ TDQ+SL++L EQRL QQ+W+ KL+ F
Sbjct: 931 HLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEF 990
Query: 1011 DFEIKYKPGIENKAADALSR----KLQFSAISSVQCEDWEDLETEILADDKYQKIIQEIT 1066
D+EI+Y+ G EN ADALSR ++ A++ V+C+ +D++ D + Q II +
Sbjct: 991 DYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQ 1050
Query: 1067 TQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALF 1126
+ + L K++IV+P IL H S VGGH+G T++R+ LF
Sbjct: 1051 RDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGLF 1110
Query: 1127 FWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGK 1186
+ +GM DIQ Y++ C CQ+ K + G LQPLPIP +WS++SMDFI GLP + GK
Sbjct: 1111 YSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGK 1170
Query: 1187 DTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWS 1246
I+VVVDR +K AHF+ALSHPY+A VA+ ++ + KLHG PTSIVSDRD VF S FW
Sbjct: 1171 TVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVVFTSEFWR 1230
Query: 1247 ELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTN 1306
E F L G LK +SAYHPQ+DGQTEVVNRC+ETYLRC+ +P+ W KWL+ AE+WYNTN
Sbjct: 1231 EFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTN 1290
Query: 1307 YHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMK 1366
YHS+ + TPF+ +YG+ PPV + + V V + ER L LK +L +AQ+RMK
Sbjct: 1291 YHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMK 1350
Query: 1367 QQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQ 1426
Q A++HR + + ++GD VY+K+QPY+ +S+ R NQKLSP+++GPY +I++ VAYKL
Sbjct: 1351 QFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLA 1410
Query: 1427 LPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEWELKVEPESIID----SRAGDKGT 1482
LP SQVHPVFHVS LK + LP M + +E KV PE +++ +R G K
Sbjct: 1411 LPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFE-KV-PEKVVERKMVNRQG-KAV 1467
Query: 1483 VEVLVKWKNMPEFENSWEDYTELLEQFPE 1511
+VLVKW N P E +WE +L + FPE
Sbjct: 1468 TKVLVKWSNEPLEEATWEFLFDLQKTFPE 1496
>At1g35370 hypothetical protein
Length = 1447
Score = 980 bits (2534), Expect = 0.0
Identities = 586/1556 (37%), Positives = 863/1556 (54%), Gaps = 161/1556 (10%)
Query: 1 MVLTRSAMESRV--------DNLERSITEMKEEAHEQFEELRRLF--MSRERRRTRGRSN 50
MV+TRS+ E V D + +T+++E EQ + + + M RT +
Sbjct: 1 MVVTRSSQEEDVKGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMADMMSAMSRTTAKRV 60
Query: 51 TPRHRRVSRDHNSVSLARSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGR-------- 102
T + + R S+ RS S S V R+ + V +
Sbjct: 61 TEGEKVLDR-----SVPRSSTSSMARSGFVEHQRDFQRDFRPEMVRQEVNNQYGNLTRLG 115
Query: 103 RVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQA---- 158
++D P F+G+ W+ KVE FF + E KV+MV I + A +W + +
Sbjct: 116 KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLD 175
Query: 159 PVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLK 218
W + + L RF+ + +P L ++ ++EY + FEL+ + N E L
Sbjct: 176 VFFNWPEYVKLLKDRFE-DACDDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLV 233
Query: 219 GVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFG 278
V+L GL + + ++++ + + D + E + K+ W +KG
Sbjct: 234 SVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYERAH-------PKKTVSSTWSQKG--- 283
Query: 279 GRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGG 338
T SG SY+ + E K HL
Sbjct: 284 ----TRSGG----------SYRP-----VKEVEQKSDHL--------------------- 303
Query: 339 QRLTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEGEDEEEEEEVFEEAEDGEF 398
GLC+ C EK+ EH K QL ++ ++E E+ +D E
Sbjct: 304 --------------GLCYFCDEKFTPEHYLVHKKTQLFRMDVDEEFEDAVEVLSDDDHE- 348
Query: 399 VLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVV 458
+ + Q+S+N+ G++ ++ VKG + +R++ IL+D G+T NFI + A+L V
Sbjct: 349 --QKPMPQISVNAVSGISGYKTMGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVE 406
Query: 459 ATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNI 518
+ V V +G + G K ++Q ++ L G ++VLG+ WL +LG I
Sbjct: 407 SAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRI 466
Query: 519 EANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIK--KTKHDEGEEYFLSYEC----- 571
F+ L +++ Q++ + G + + + IK K + + ++ L+ C
Sbjct: 467 SWEFKKLEMQFFYKNQRVWLHG-----IITGSVRDIKAHKLQKTQADQIQLAMVCVREVV 521
Query: 572 SEEEP--------TANVTIPELWIKLLTEFPEVFQEPKELPPKRAT-DHAILLQEGAPIP 622
S+EE T++V + ++ EFP+VF EP +LPP R DH I L EGA
Sbjct: 522 SDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPV 581
Query: 623 NIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNK 682
N RPYRY +QK+EI+K+V++M+ +G I+ S+SPF+SP +LVKKKDG WR CVDY LN
Sbjct: 582 NQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNG 641
Query: 683 VTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLV 742
+T+ D+F IP+I++L+DE+G + +FSK+DL++GYHQ+RM +DI KTAF+TH GH+EYLV
Sbjct: 642 MTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLV 701
Query: 743 LPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNH 802
+ FGLTNAP+TFQ+LMN V R +LRKFVLVFF DILIYS++++ HKEHLR V +V+R +
Sbjct: 702 MLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHK 761
Query: 803 LVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYR 862
L A K +LGH IS + DP+KI+ + WP P VK +RGFLG GYYR
Sbjct: 762 LFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYR 813
Query: 863 RFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDA 922
RFVRN+ +A PL+ L K + F WS A AFD LK ++ PVLA+P F K F++ETDA
Sbjct: 814 RFVRNFGVIAGPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDA 873
Query: 923 SGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHT 982
G+G+ AVLMQ G P+AY+S+ L + S+YE+EL+A + AV+KWRHYLL FI+ T
Sbjct: 874 CGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKT 933
Query: 983 DQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSR----KLQFSAIS 1038
DQ+SL++L EQRL QQ+W+ KL+ FD+EI+Y+ G EN ADALSR ++ A+S
Sbjct: 934 DQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALS 993
Query: 1039 SVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIP 1098
V+C+ ++++ +D + II + Y + L K++IV+P
Sbjct: 994 IVECDFLKEIQVAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITN 1053
Query: 1099 IILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGY 1158
+LQ H S +GG +G +++R+ +LF+W+GM DIQ +++ C CQ+ K + G
Sbjct: 1054 KLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGL 1113
Query: 1159 LQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELF 1218
LQPLPIP ++W D+SMDFI GLP + GK I+VVVDR +K AHF+AL+HPY+A VA+ F
Sbjct: 1114 LQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAF 1173
Query: 1219 IKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVE 1278
+ + K HG PTSIVSDRD +F S FW E FKL G +L+ SSAYHPQ+DGQTEVVNRC+E
Sbjct: 1174 LDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLE 1233
Query: 1279 TYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVN 1338
YLRC+ A+P W KWL AE+WYNTNYHS+ + TPF+ +YG+ PP+ + + V
Sbjct: 1234 NYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVA 1293
Query: 1339 EVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLAR 1398
V + ER L LK +L +AQ+RMKQ A++HR + +GD VY+K+QPY+ +S+
Sbjct: 1294 VVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353
Query: 1399 RKNQKLSPRFYGPYPVIEK-----INAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQ 1453
R NQKLSP+++GPY +IEK + V QLP V P + +KAP
Sbjct: 1354 RVNQKLSPKYFGPYKIIEKCGEVMVGNVTTSTQLP---SVLP----DIFEKAPE------ 1400
Query: 1454 PLPVYMTEEWELKVEPESIIDSRAGDKGTVEVLVKWKNMPEFENSWEDYTELLEQF 1509
Y+ E +K R G T+ VLVKW P E +W+ + ++F
Sbjct: 1401 ----YILERKLVK---------RQGRAATM-VLVKWIGEPVEEATWKFLFDRQQKF 1442
>At2g10780 pseudogene
Length = 1611
Score = 682 bits (1759), Expect = 0.0
Identities = 473/1458 (32%), Positives = 746/1458 (50%), Gaps = 134/1458 (9%)
Query: 117 WITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQA--PVRAWEPFKQALIRRF 174
W ++++R F+ +R E + ++ + +E A +W+ E++ VR++ F+ +++
Sbjct: 194 WRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRSFADFEDEFNKKY 253
Query: 175 QP----ELVQNPFGPLLSAKQKGSVMEYREHFELLAAPM-RNADREVLK-GVFLNGLHEE 228
P + ++ + L+ + +V EY E F L + R + E + F+ GL E
Sbjct: 254 FPPEAWDRLECAYLDLVQGNR--TVREYDEEFNRLRRYVGRELEEEQAQLRRFIRGLRIE 311
Query: 229 IKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGET 288
I+ + +++L++RA ++EE EE++ +EK ST +
Sbjct: 312 IRNHCLVRTFNSVSELVERAAMIEE---------GIEEERYLNREKAPIRNNQSTKPADK 362
Query: 289 RGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQRLTQTELQE 348
+ + + +NT ++ K E G
Sbjct: 363 KRKF--------------------------DKVDNTKSDAKTGECVTCG----------- 385
Query: 349 RSRRGLCFK----CGEKWGREHI---CAKKNFQLILIEGEDEEEEEEVFEEAEDGEFVLE 401
++ G C+K CG ++H C K + GE E F + G L+
Sbjct: 386 KNHSGTCWKAIGACGRCGSKDHAIQSCPKMEPGQSKVLGE---ETRTCFYCGKTGH--LK 440
Query: 402 GKVLQLSLNSKEGLTSNRSFK------VKGKIGEREILILVDCGATSNFISQELVAELEI 455
+ +L+ + G NR + + R + + NF + E
Sbjct: 441 RECPKLTAEKQAGQRDNRGGNGLPPPPKRQAVASRVYELSEEANDAGNFRAITGGFRKE- 499
Query: 456 PVVATSEY-VVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLAS 514
++Y +V G +G+ + + + V G+ + I+ L +++LGMDWL
Sbjct: 500 ---PNTDYGMVRAAGGQAMYPTGLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGK 556
Query: 515 LGNIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEE 574
+ I++E + + QG + + +G E +L+ + +
Sbjct: 557 Y-KAHIDCHRGRIQFERDEGMLKFQGIRTTSGSLVISAIQAERMLGKGCEAYLA-TITTK 614
Query: 575 EPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQK 634
E A+ + + I ++ EF +VF +PP R+ I L+ G + PYR +
Sbjct: 615 EVGASAELKD--IPIVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEM 672
Query: 635 NEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPII 694
+++K ++E+L G IR S+SP+ +P + VKKKDG +R C+DYR LNKVT+ +K+P+P I
Sbjct: 673 AKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRI 732
Query: 695 DELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTF 754
DEL+D++G A+ FSK+DL SGYHQI + D+ KTAFRT H+E++V+PFGLTNAP+ F
Sbjct: 733 DELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGLTNAPAAF 792
Query: 755 QALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQ 814
+MN V R +L +FV++F DIL+YS + + H+EHLR VL+ LR++ L A KCSF Q
Sbjct: 793 MKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQ 852
Query: 815 SELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQP 874
+ +LGHVIS +GV+ DP KI+ + WP P++ +R FLGL GYYRRFV +++ +AQP
Sbjct: 853 RSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQP 912
Query: 875 LNQLLKKNN-FSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQ 933
L +L K+ F+WS ++F +LK ++T PVL +P+ + + + TDAS GLG VLMQ
Sbjct: 913 LTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQ 972
Query: 934 GGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQ 993
G +AY S+ L + + ++ E+ AVV ++ WR YL G K ++TD KSL+++ Q
Sbjct: 973 KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQ 1032
Query: 994 RLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRK-------------------LQF 1034
+ Q++W+ + ++ +I Y PG N+ ADALSR+ L
Sbjct: 1033 PELNLRQRRWMELVADYNLDIAYHPGKANQVADALSRRRSEVEAERSQVDLVNMMGTLHV 1092
Query: 1035 SAIS------SVQCEDWEDLETEI-LADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNR 1087
+A+S + D DL + I LA ++ ++I + Q G ++ R
Sbjct: 1093 NALSKEVEPLGLGAADQADLLSRIRLAQERDEEI--KGWAQNNKTEYQTSNNGTIVVNGR 1150
Query: 1088 IVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQR 1147
+ +P IL+E H S H G + Y+ + + W GMK D+ +V KC CQ
Sbjct: 1151 VCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQL 1210
Query: 1148 NKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGK--DTILVVVDRFTKYAHFLAL 1205
K E P+G LQ LPIP W I+MDF+ GLP + + + VVVDR TK AHF+A+
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270
Query: 1206 SHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQ 1265
S A+ +AE +I EIV+LHG P SIVSDRD F S FW K GT++ S+AYHPQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330
Query: 1266 TDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGRE-- 1323
TD Q+E + +E LR W K+L EF YN ++ ++I +P++ALYGR
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390
Query: 1324 -----PPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQL 1378
PV G L V++ T ER F LK L++AQ+R K ANK R++++
Sbjct: 1391 TPLCWTPV---GERRLFGPTIVDE-TTERMKF---LKIKLKEAQDRQKSYANKRRKELEF 1443
Query: 1379 KVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQL-PEGSQVHPVF 1437
+VGD+VYLK YK + +KLSPR+ GPY VIE++ AVAYKL L P+ + H VF
Sbjct: 1444 QVGDLVYLKAMTYKGAGRFTSR-KKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVF 1502
Query: 1438 HVSLLKKAPNEGVNS-QPLPVYMTEEWELKVEPESIIDSRA-GDKGTVEVLVK--WKNMP 1493
HVS L+K ++ S + +P + E ++ P I+D G +G L+K W
Sbjct: 1503 HVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNCRG 1562
Query: 1494 EFENSWEDYTELLEQFPE 1511
E +WE ++ FPE
Sbjct: 1563 REEYTWETENKMKANFPE 1580
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 630 bits (1625), Expect = e-180
Identities = 319/659 (48%), Positives = 437/659 (65%), Gaps = 56/659 (8%)
Query: 588 KLLTEFPEVFQEPKELPPKRAT-DHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLA 646
K++TEFP++F EP +LPP RA DH I L E + N RPYRY +QKNEI+K+V +MLA
Sbjct: 9 KVVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDMLA 68
Query: 647 AGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEI 706
+G I+ S+SP++SP +LVKKKDG WR CVDYR LN +T+ D+FPIP+I++L+DE+G + +
Sbjct: 69 SGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNV 128
Query: 707 FSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYL 766
+SK+DL++GYHQ+RM DI KTAF+TH GHYEYLV+PFGLTNAP++FQ+LMN +P+L
Sbjct: 129 YSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPFL 188
Query: 767 RKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISK 826
RKFVLVFF DILIYS +++ HK+HL V +V+R +HL A KC+F + YLGH IS
Sbjct: 189 RKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFISG 248
Query: 827 EGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSW 886
EG+A DP+KIK + +WP+P ++K L GFLGLTGYYRRF
Sbjct: 249 EGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF---------------------- 286
Query: 887 SAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLS 946
FV+E DA G G+GAVLMQ G P+A++S+ L
Sbjct: 287 -----------------------------FVVEMDACGHGIGAVLMQEGHPLAFISRQLK 317
Query: 947 ERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSK 1006
+ S+YE+EL+AV+ V+KWRHYL+ FI+ TDQ+SL++L EQRL QQ+W+ K
Sbjct: 318 GKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPK 377
Query: 1007 LMGFDFEIKYKPGIENKAADALSR----KLQFSAISSVQCEDWEDLETEILADDKYQKII 1062
L+ FD+EI+YK G EN ADALSR ++ A+S V+C+ ++++ + D Q II
Sbjct: 378 LLEFDYEIQYKQGKENLVADALSRVEGSEVLHMALSVVECDLLKEIQAGYVTDGDIQGII 437
Query: 1063 QEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRI 1122
+ Q Y +G L KN+IV+P SG IL+ H S +GGH+G T++R+
Sbjct: 438 TILQQQADSKKHYTWSQGVLRRKNKIVVPNNSGIKDTILRWLHCSGMGGHSGKEVTHQRV 497
Query: 1123 SALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPK 1182
LF+W+ M DIQ +++ C CQ+ K + G LQPLPIP ++WSD+SMDFI GLP
Sbjct: 498 KGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDRIWSDVSMDFIDGLPL 557
Query: 1183 TMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFL 1241
+ GK I+VVVDR +K AHF+AL+HPY+A VA+ ++ + KLHG P+SIV RV +
Sbjct: 558 SNGKTVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLHGCPSSIVVSSRRVLV 616
Score = 126 bits (316), Expect = 1e-28
Identities = 61/130 (46%), Positives = 90/130 (68%)
Query: 1314 TPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHR 1373
TP++A+YG+ PP+ + + V V + ER + LK +L +AQ+RMKQ A++H
Sbjct: 626 TPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQHI 685
Query: 1374 RDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQV 1433
+ + +VGD V++K+QPY+ +S+ R QKLSP+++GPY VI++ VAYKLQLP SQV
Sbjct: 686 TEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPANSQV 745
Query: 1434 HPVFHVSLLK 1443
HPVFHVS L+
Sbjct: 746 HPVFHVSQLR 755
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 622 bits (1603), Expect = e-178
Identities = 383/1086 (35%), Positives = 584/1086 (53%), Gaps = 90/1086 (8%)
Query: 465 VEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQD 524
V+V G G K + +++ G + I + +++LGMDWL + +
Sbjct: 365 VKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHY-RVHLDCHR 423
Query: 525 LIIKWELNGQKMCMQG-EPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTANVTIP 583
+ +E ++ QG P+ + + KK E Y ++ S E V +
Sbjct: 424 GRVSFERPEGRLVYQGVRPTSGSLVISAVQAKKMIEKGCEAYLVTI--SMPESLGQVAVS 481
Query: 584 ELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKE 643
+ I+++ EF +VFQ + LPP R+ I L+ G + PYR + E++K +++
Sbjct: 482 D--IRVIQEFEDVFQSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLED 539
Query: 644 MLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGT 703
+L G IR STSP+ +P + VKKKDG +R C+DYR LN VT+ +K+P+P IDELLD++
Sbjct: 540 LLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRG 599
Query: 704 AEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLR 763
A FSK+DL SGYHQI + E D+ KTAFRT GH+E++V+PF LTNAP+ F LMN V +
Sbjct: 600 ATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQ 659
Query: 764 PYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHV 823
+L +FV++F DIL+YS + + H+ HLR V++ LR+ L A KCSF Q E+ +LGH+
Sbjct: 660 EFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHI 719
Query: 824 ISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN- 882
+S EGV+ DP KI+ + +WP P + +R FL LTGYYRRFV+ ++ +AQP+ +L K+
Sbjct: 720 VSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKDV 779
Query: 883 NFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMS 942
F WS + F LKE++T+ PVLA+P+ + +++ TDAS GLG VLMQ G+ +AY S
Sbjct: 780 PFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGKVIAYAS 839
Query: 943 KTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQK 1002
+ L + ++ E+ V+ A++ WR YL G K V TD KSL+++ Q + Q +
Sbjct: 840 RQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMR 899
Query: 1003 WVSKLMGFDFEIKYKPGIENKAADALSRK-------------------LQFSAIS----S 1039
W+ + +D EI Y PG N ADALSRK L+ ++
Sbjct: 900 WMELVADYDLEIAYHPGKANVVADALSRKRVGAAPGQSVEALVSEIGALRLCVVAREPLG 959
Query: 1040 VQCEDWEDLETEI-LADDKYQKIIQEITTQGPVPAGYHM-RRGRLLYKNRIVLPKTSGKI 1097
++ D DL T LA +K + +I +G + Y G + R+ +PK
Sbjct: 960 LEAVDRADLLTRARLAQEKDEGLIAASKAEG---SEYQFAANGTIFVYGRVCVPKDEELR 1016
Query: 1098 PIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAG 1157
IL E H S H G + Y+ + + W GMK D+ +V +C++CQ K E
Sbjct: 1017 REILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEH----- 1071
Query: 1158 YLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAEL 1217
+P +W V++DR TK AHFLA+ A +A+
Sbjct: 1072 -----QVPDAIW---------------------VIMDRLTKSAHFLAIRKTDGAAVLAKK 1105
Query: 1218 FIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCV 1277
++ EIVKLHG P SIVSDRD F +FW GTK++ S+AYHPQTDGQ+E + +
Sbjct: 1106 YVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTL 1165
Query: 1278 ETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTD----S 1333
E LR W LS EF YN +Y ++I PF+ALYGR ++ T S
Sbjct: 1166 EDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWTQVEERS 1225
Query: 1334 LASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKL 1393
+ + V++ T ER + LK N+++AQ R + A+K RR+++ +VGD VYLK+
Sbjct: 1226 IYGADYVQE-TTER---IRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKM----- 1276
Query: 1394 KSLARRKNQ-----KLSPRFYGPYPVIEKINAVAYKLQLPEGSQV-HPVFHVSLLKKAPN 1447
++ R N+ KLSPR+ GP+ ++E++ VAY+L+LP+ + H VFHV +L+K +
Sbjct: 1277 -AMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLH 1335
Query: 1448 EGVN-SQPLPVYMTEEWELKVEPESIIDSRAGD---KGTVEVLVKWKNMPEFENSWEDYT 1503
+ +P + L+ P +++ R + K + V W E +WE
Sbjct: 1336 KDDEVLVKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEA 1395
Query: 1504 ELLEQF 1509
+ +F
Sbjct: 1396 RMKARF 1401
Score = 38.9 bits (89), Expect = 0.024
Identities = 53/207 (25%), Positives = 81/207 (38%), Gaps = 37/207 (17%)
Query: 113 DAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVR-----AWEPFK 167
+A W ++V+R F SR +V++ + +E A WW R +W F
Sbjct: 146 EADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDA---HLWWRSVTARRRQADMSWADFV 202
Query: 168 QALIRRFQP-ELVQNPFGPLLSAKQ-KGSVMEY-REHFELLAAPMRN-ADREVLKGVFLN 223
++ P E + L Q + SV EY RE LLA R D + FL
Sbjct: 203 AEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNRLLAYAGRGMEDDQAQMRRFLR 262
Query: 224 GLHEEIKAEMKLYPSEDLADLMDRALLLEE---------------KNSAM-----RGGKS 263
GL +++ + ++ A L++ A +EE KN+ +GGK
Sbjct: 263 GLRPDLRVQCRVSQYATKAALVETAAEVEEDLQRQVVGVSPAVQTKNTQQQVTPSKGGKP 322
Query: 264 KEEDKRGWKE-----KGGFGGRFSTNS 285
+ KR W +GG G FS S
Sbjct: 323 AQGQKRKWDHPSRAGQGGRAGYFSCGS 349
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 604 bits (1558), Expect = e-172
Identities = 387/1097 (35%), Positives = 588/1097 (53%), Gaps = 97/1097 (8%)
Query: 427 IGEREILILVDCGATSNFISQELVAELEIPVVATSEY-VVEVGNGARERNSGVCKNLKLE 485
+G E +L D GA+ FI+ E + I + V+V G G K + ++
Sbjct: 308 VGGVEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQ 367
Query: 486 VQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSFC 545
+ G + I + +++LGMDWL + L+ C +G SF
Sbjct: 368 IAGESMPADLIISPVELYDVILGMDWLDHY------------RVHLD----CHRGRVSFE 411
Query: 546 KVAAT--WKSIKKTKHDEGEEYFLSYECSEEEPTANVTIPELWIKLLTEFPEVFQEPKEL 603
+ + ++ ++ T G + + + + E + EF +VFQ + L
Sbjct: 412 RPEGSLVYQGVRPTS---GSLVISAVQAEK--------MIEKGCEAYLEFEDVFQSLQGL 460
Query: 604 PPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAIL 663
PP R+ I L+ G + PYR + E++K ++++L A P +
Sbjct: 461 PPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGA------------PVLF 508
Query: 664 VKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMRE 723
VKKKDG +R C+DYR LN VT+ +K+P+P IDELLD++ A FSK+DL SGYH I + E
Sbjct: 509 VKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAE 568
Query: 724 EDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNN 783
D+ KTAFRT GH+E++V+PFGLTNAP+ F LMN V + L +FV++F DIL+YS +
Sbjct: 569 ADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKS 628
Query: 784 VDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWP 843
++ H+ HLR V++ LR+ L A KCSF Q E+ +LGH++S EGV+ DP KI+ + +W
Sbjct: 629 LEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWH 688
Query: 844 LPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN-NFSWSAGATQAFDKLKEIMT 902
P + +R FLGL GYYRRFV+ ++ +AQP+ +L K+ F WS + F LKE++T
Sbjct: 689 TPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLT 748
Query: 903 TVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAV 962
+ PVLA+P+ + +++ TDASG GLG VLMQ G+ +AY S+ L + ++ E+ AV
Sbjct: 749 STPVLALPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAV 808
Query: 963 VLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIEN 1022
+ A++ WR YL G V TD KSL+++ Q + Q++W+ + +D EI Y PG N
Sbjct: 809 IFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKAN 868
Query: 1023 KAADALSRKLQFSAISSVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYH-MRRGR 1081
ADALS K + + + E L +EI A + P G + R
Sbjct: 869 VVADALSHK----RVGAAPGQSVEALVSEIGA--------LRLCAVAREPLGLEAVDRAD 916
Query: 1082 LLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQK 1141
LL + R+ K G I A + EG + D+ +V +
Sbjct: 917 LLTRVRLAQEKDEGLI--------------------------AAYKAEGSE-DVANWVAE 949
Query: 1142 CEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAH 1201
C++CQ K E P G LQ LPIP W I++DF+ GLP + KD I V+VDR TK AH
Sbjct: 950 CDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTKDAIWVIVDRLTKSAH 1009
Query: 1202 FLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSA 1261
FLA+ A +A+ ++ EIVKLHG P SIVSDRD F S+FW GTK++ S+A
Sbjct: 1010 FLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTA 1069
Query: 1262 YHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYG 1321
YHPQT GQ+E + +E LR W LS EF YN +Y ++I PF+ALY
Sbjct: 1070 YHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAPFEALYE 1129
Query: 1322 R--EPPVIIK--GTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQ 1377
R P+ + G S+ + V++ T ER + LK N+++AQ+R + A+K RR+++
Sbjct: 1130 RPCRTPLCLTQVGERSIYGADYVQE-TTER---IRVLKLNMKEAQDRQRSYADKRRRELE 1185
Query: 1378 LKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQV-HPV 1436
+VGD VYLK+ + + + + KLSPR+ GP+ ++E++ VAY+L+LP+ + H V
Sbjct: 1186 FEVGDRVYLKMAMLRGPNRSISET-KLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKV 1244
Query: 1437 FHVSLLKKAPNEGVN-SQPLPVYMTEEWELKVEPESIIDSRAGD---KGTVEVLVKWKNM 1492
FHVS+L+K ++ +P + L+ P +++ R + K + V W
Sbjct: 1245 FHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCD 1304
Query: 1493 PEFENSWEDYTELLEQF 1509
+ +WE + +F
Sbjct: 1305 GVTKETWEPEARMKARF 1321
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 498 bits (1282), Expect = e-140
Identities = 287/765 (37%), Positives = 433/765 (56%), Gaps = 37/765 (4%)
Query: 477 GVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKM 536
G K + +++ G + I + +++LGMDWL + ++ + +E ++
Sbjct: 351 GRAKGVDIQIAGESMPADLIISPVELYDVILGMDWL-DYYRVHLDWHRGRVFFERPEGRL 409
Query: 537 CMQG-EPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTANVTIPELWIKLLTEFPE 595
QG P + + +K E Y ++ S E V + + I+++ EF +
Sbjct: 410 VYQGVRPISGSLVISAVQAEKMIEKGCEAYLVTI--SMPESVGQVAVSD--IRVVQEFQD 465
Query: 596 VFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTS 655
VFQ + LPP ++ I L+ G + PYR + E++K +K++L G IR STS
Sbjct: 466 VFQSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTS 525
Query: 656 PFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSG 715
P+ +P + VKKKDG +R C+DYR LN+VT+ +++P+P IDELLD++ A FSK+DL SG
Sbjct: 526 PWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSG 585
Query: 716 YHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFY 775
YHQI + E D+ KTAFRT GH+E++V+PFGLTNAP+ F LMN V + +L +FV++F
Sbjct: 586 YHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFID 645
Query: 776 DILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSK 835
DIL+YS + + + HLR V++ LR+ L A KCSF Q E+ +LGH++S EGV+ DP K
Sbjct: 646 DILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEK 705
Query: 836 IKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN-NFSWSAGATQAF 894
I+ + +WP P + +R FLG GYYRRFV+ ++ +AQP+ +L K+ F WS + F
Sbjct: 706 IEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGF 765
Query: 895 DKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSV 954
LKE++T+ PVLA+P+ + +++ TDAS GLG VLMQ G+ +AY S+ L +
Sbjct: 766 VSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPT 825
Query: 955 YERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEI 1014
++ E+ AV+ A++ WR YL G K V TD KSL+++ Q + Q++W+ + +D EI
Sbjct: 826 HDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEI 885
Query: 1015 KYKPGIENKAADALSRKLQFSAISSVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAG 1074
Y PG N DALSRK +A+ + E L +EI A + P G
Sbjct: 886 AYHPGKANVVVDALSRKRVGAALG----QSVEVLVSEIGA--------LRLCAVAREPLG 933
Query: 1075 YH-MRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKL 1133
+ R LL + R+ K G + Y+ + + W GMK+
Sbjct: 934 LEAVDRADLLTRVRLAQKKDEG-----------------LRATKMYRDLKRYYQWVGMKM 976
Query: 1134 DIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVV 1193
D+ +V +C++CQ K E G LQ LPIP W I+MD + GL + KD I V+V
Sbjct: 977 DVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLRVSRTKDAIWVIV 1036
Query: 1194 DRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDR 1238
DR TK AHFLA+ A +A+ F+ EIVKLHG P ++ +DR
Sbjct: 1037 DRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQDR 1081
Score = 82.8 bits (203), Expect = 1e-15
Identities = 48/158 (30%), Positives = 89/158 (55%), Gaps = 6/158 (3%)
Query: 1357 NLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIE 1416
N+++AQ+R + A+K RR+++ +VGD VYLK+ + + + + KLSPR+ GP+ ++E
Sbjct: 1074 NMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISET-KLSPRYMGPFKIVE 1132
Query: 1417 KINAVAYKLQLPEGSQV-HPVFHVSLLKKAPNEGVNS-QPLPVYMTEEWELKVEPESIID 1474
++ VAY+L+LP+ + H VFHVS+L+K ++ + +P + L+ P +++
Sbjct: 1133 RVEPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLEARPVRVLE 1192
Query: 1475 SRAGD---KGTVEVLVKWKNMPEFENSWEDYTELLEQF 1509
R + K + V W E +WE + +F
Sbjct: 1193 RRIKELRQKKIPLIKVLWDCDGVTEETWEPEARMKARF 1230
>At2g06890 putative retroelement integrase
Length = 1215
Score = 486 bits (1251), Expect = e-137
Identities = 346/1066 (32%), Positives = 528/1066 (49%), Gaps = 111/1066 (10%)
Query: 194 SVMEYREHFE-LLAAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLE 252
SV EY + E L+ + DRE FL L+ +I+ ++ + +++ +A+L E
Sbjct: 31 SVEEYYKEMETLMLRADISEDREATLSRFLGDLNRDIQDRLETQYYVQIEEMLHKAILFE 90
Query: 253 EKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPNVS--YQSKGAGGTQGN 310
++ R S+ G K + T+S + P VS +SK Q +
Sbjct: 91 QQ--VKRKSSSRSSYGSGTIAKPTYQREERTSSYHNK-----PIVSPRAESKPYAAVQDH 143
Query: 311 EGKPQHLKEGTENTNNEGKIPERKWNGGQRLTQTELQERSRRGLCFKCGEKWGREHICAK 370
+GK + R R C+KC K + C
Sbjct: 144 KGKAEISTS-----------------------------RVRDVRCYKCQGKGHYANECPN 174
Query: 371 KNFQLILIEGEDEEEEE---------EVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSF 421
K ++L GE E EEE E E GE ++ + L + + E F
Sbjct: 175 KRVMILLDNGEIEPEEEIPDSPSSLKENEELPAQGELLVARRTLSVQTKTDEQEQRKNLF 234
Query: 422 KVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATS-------EYVVEVGNGARER 474
+ + + +++D G+ +N S+ +V +L + + S + VV + G E
Sbjct: 235 HTRCHVHGKVCSLIIDGGSCTNVASETMVKKLGLKWLNDSGKMRVKNQVVVPIVIGKYE- 293
Query: 475 NSGVCKNLKLEVQGIPI---------IQHFFILGLGGTELVLGMDWLASLGNIEANFQDL 525
+ +C L +E I + + H E G L S+ E +QD
Sbjct: 294 DEILCDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEV-YQDQ 352
Query: 526 IIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTANVTIPEL 585
I L +K + +P+F + KS +K + F+ E +P
Sbjct: 353 I---HLKQKKEQVVKQPNFFAKSGEVKSAYSSK--QPMLLFVFKEALTSLTNFAPVLPSE 407
Query: 586 WIKLLTEFPEVFQE--PKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKE 643
LL ++ +VF E PK LPP R +H I GA +PN P Y+ N +E KE
Sbjct: 408 MTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPN-----RPAYRTNPVE--TKE 460
Query: 644 MLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGT 703
L ++KDG WR C D RA+N VT+ PIP +D++LDE+
Sbjct: 461 -------------------LQRQKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHG 501
Query: 704 AEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLR 763
+ IFSK+DLKSGYHQIRM E D KTAF+T G YE+LV+PFGLT+APSTF LMN VLR
Sbjct: 502 SSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLR 561
Query: 764 PYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHV 823
++ FV+V+F DIL+YS ++ H EHL VL VLR L AN KKC+F L++LG V
Sbjct: 562 AFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFV 621
Query: 824 ISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN- 882
+S +GV D K+K + +WP PK V +R F GL G+YRRF +++S + PL +++KK+
Sbjct: 622 VSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDV 681
Query: 883 NFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMS 942
F W +AF LK+ +T PVL + +F KTF +E DASG G+GAVLMQ + +A+ S
Sbjct: 682 GFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFS 741
Query: 943 KTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQK 1002
+ L Y++EL A+V A+Q+W+HYL F++HTD +SL+ L Q+ + + +
Sbjct: 742 EKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHAR 801
Query: 1003 WVSKLMGFDFEIKYKPGIENKAADALSRKLQFSAISSVQCEDWEDLETEILADDKYQKII 1062
WV + F + IKYK G +N ADALS++ + +V+ +E ++ D +Q++
Sbjct: 802 WVEFIETFAYVIKYKKGKDNVVADALSQRYTLLSTLNVKLMGFEQIKEVYETDHDFQEVY 861
Query: 1063 QEITTQGPVPAGYHMRRGR-LLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKR 1121
+ +G + R+ + L Y+NR+ +P S + + ++E H + GH GI +T +
Sbjct: 862 KACE---KFASGRYFRQDKFLFYENRLCVPNCSLR-DLFVREAHGGGLMGHFGIAKTLEV 917
Query: 1122 ISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLP 1181
++ F W MK D++ +C C++ K + P G PLPIP W+DISMDF+ GLP
Sbjct: 918 MTEHFRWPHMKCDVKRICGRCNTCKQAK-SKIQPNGLYTPLPIPKHPWNDISMDFVMGLP 976
Query: 1182 KTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHG 1227
+T GKD+I VV F F +P + ++ L + E V + G
Sbjct: 977 RT-GKDSIFVVYSPFQIVYGF----NPISPFDLIPLPLSERVSIDG 1017
Score = 57.0 bits (136), Expect = 8e-08
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 1314 TPFQALYGREP----PVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQA 1369
+PFQ +YG P +I S++ +K + + + + N+E+ +QA
Sbjct: 988 SPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIH-ENARRNIEEKTKLYAKQA 1046
Query: 1370 NKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPE 1429
NK RR+ +VGDMV++ ++ K + A+RK+ KL PR GP+ +I++IN AY+L L +
Sbjct: 1047 NKGRREQIFEVGDMVWIHLR--KERFPAQRKS-KLMPRIDGPFKIIKRINDNAYQLDLQD 1103
>At3g31970 hypothetical protein
Length = 1329
Score = 426 bits (1095), Expect = e-119
Identities = 279/827 (33%), Positives = 425/827 (50%), Gaps = 110/827 (13%)
Query: 716 YHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFY 775
+ I + E ++ KTAFRT GH+E++V+PFGLTN P+ F LMN V + +L +FV++F
Sbjct: 570 FEDIPIAEANVRKTAFRTRYGHFEFVVMPFGLTNIPTAFMRLMNSVFQEFLDEFVIIFID 629
Query: 776 DILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSK 835
DIL+YS + + H+ E S G++ ++ GV+ D K
Sbjct: 630 DILVYSKSPEEHEVQSEE-----------------SDGEA-------AGAEVGVSVDLEK 665
Query: 836 IKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN-NFSWSAGATQAF 894
I+ + +WP P + +R FLGL GYY+RFV+ ++ +AQP+ +L K+ F WS + F
Sbjct: 666 IEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTKLTGKDVPFVWSPECDEGF 725
Query: 895 DKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSV 954
LKE++T+ PVLA+P+ + +++ TDAS GL VLMQ G+
Sbjct: 726 MSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRGK------------------ 767
Query: 955 YERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEI 1014
V TD KSL+++ Q + Q++W+ + +D EI
Sbjct: 768 -------------------------VFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEI 802
Query: 1015 KYKPGIENKAADALSRKLQFSAISSVQCE-------------------DWEDLETEI-LA 1054
Y G N ADALSRK ++ ++ E D DL T + LA
Sbjct: 803 AYHSGKANVVADALSRKRVGGSVEALVSEIGALRLCVMAQEPLGLEAVDRADLLTRVRLA 862
Query: 1055 DDKYQKIIQEITTQGPVPAGYHMR-RGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHA 1113
+K + +I G + Y G +L R+ +PK IL E H S H
Sbjct: 863 QEKDEGLIAASKADG---SEYQFAANGTILVHGRVCVPKDEELRREILSEAHASMFSIHP 919
Query: 1114 GIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDIS 1173
+ Y+ + + W GMK D+ +V +C++CQ K E P G LQ LPI W I+
Sbjct: 920 RATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVPGGLLQSLPILEWKWDFIT 979
Query: 1174 MDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIV 1233
MDF+ GLP + KD I V+VDR TK AHFLA+ A +A+ ++ EIV+LHG P SIV
Sbjct: 980 MDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAVLLAKKYVSEIVELHGVPVSIV 1039
Query: 1234 SDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWP 1293
SDRD F S+FW GTK++ S+AYHPQTDGQ+E + +E LR + W
Sbjct: 1040 SDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDRGGHWA 1099
Query: 1294 KWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVII----KGTDSLASVNEVEKMTAERNL 1349
LS EF YN +Y ++I+ PF+ALYGR + G S+ + V + T ER
Sbjct: 1100 DHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERSIYGADYVLE-TTER-- 1156
Query: 1350 FLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFY 1409
+ LK N+++AQ+R + A+K RR+++ +VGD VYLK+ + + + + KL+PR+
Sbjct: 1157 -IRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISET-KLTPRYM 1214
Query: 1410 GPYPVIEKINAVAYKLQLPEGSQV-HPVFHVSLLKKAPNEGVNSQPLPVYMTE---EWEL 1465
GP+ ++E++ VAY+L+LP+ + H VFHVS+L+K ++ + + L + + L
Sbjct: 1215 GPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHK--DDEVLAKILEDLQPNMTL 1272
Query: 1466 KVEPESIIDSRAGD---KGTVEVLVKWKNMPEFENSWEDYTELLEQF 1509
+ P I++ R + K + V W E +WE + F
Sbjct: 1273 EARPVRILERRIKELRRKKIPLIKVLWNCDGVTEETWEPEARMKASF 1319
Score = 32.0 bits (71), Expect = 2.9
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 113 DAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVR-----AWEPFK 167
+A W ++VE F SR +V++ + +E A WW R +W F
Sbjct: 166 EADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDA---HLWWRSVTARRRQAHMSWADFV 222
Query: 168 QALIRRFQP-ELVQNPFGPLLSAKQ-KGSVMEYREHFE--LLAAPMRNADREVLKGVFLN 223
++ P E + L Q + SV EY F L+ A D + FL
Sbjct: 223 AEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNRLLVYAGRGMQDDQAQMRRFLR 282
Query: 224 GLHEEIKAEMKLYPSEDLADLMDRALLLEE 253
GL +++ ++ A L++ A +EE
Sbjct: 283 GLRPDLRVRCRVLQYATKAALVETAAEVEE 312
>At4g07850 putative polyprotein
Length = 1138
Score = 392 bits (1006), Expect = e-108
Identities = 213/504 (42%), Positives = 287/504 (56%), Gaps = 50/504 (9%)
Query: 823 VISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN 882
V S +GV D K+K + WP PK V +R F GL G+YRRFVR++S LA PL +++KKN
Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590
Query: 883 -NFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYM 941
F W AF LKE +T PVL++PDF KTF +E DA G G+GAVLMQ +P+AY
Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650
Query: 942 SKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQ 1001
S+ L Y++EL A+V A+Q W+HYL +F++HTD +SL+ L Q+ + +
Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710
Query: 1002 KWVSKLMGFDFEIKYKPGIENKAADALSRKLQFSAISSVQCEDWEDLETEILADDKYQKI 1061
+WV + F + IKYK G +N ADALSR+
Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRR------------------------------ 740
Query: 1062 IQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKR 1121
G L Y NR+ +P +S + + ++E H + GH G+ +T K
Sbjct: 741 ----------------HEGFLFYDNRLCIPNSSLR-ELFIREAHGGGLMGHFGVSKTLKV 783
Query: 1122 ISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLP 1181
+ F W MK D++ ++C C++ K ++ P G PLPIP W+DISMDF+ GLP
Sbjct: 784 MQDHFHWPHMKRDVERMCERCTTCKQAKAKS-QPHGLCTPLPIPLHPWNDISMDFVVGLP 842
Query: 1182 KTM-GKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVF 1240
+T GKD+I VVVDRF+K AHF+ +A +A LF +E+V+LHG P +IVSDRD F
Sbjct: 843 RTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKF 902
Query: 1241 LSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAE 1300
LS FW L+ GTKL FS+ HPQTDGQTEVVNR + T LR + K W L E
Sbjct: 903 LSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVE 962
Query: 1301 FWYNTNYHSAIKTTPFQALYGREP 1324
F YN + HSA K +PFQ +YG P
Sbjct: 963 FAYNHSVHSATKFSPFQIVYGFNP 986
Score = 69.7 bits (169), Expect = 1e-11
Identities = 106/451 (23%), Positives = 171/451 (37%), Gaps = 99/451 (21%)
Query: 20 TEMKEEAHEQFEELRRLFMSRERRRTRGRSNTPRHRRVSRDHNSVSLARSDDGSRTGSRA 79
T M + E+FE R ++ER+ R+N+ R +S S +RT R
Sbjct: 14 TNMAKMMDERFEAARS---NQERKNRTMRNNSDREATLSY--------YSQSSTRTSHRR 62
Query: 80 VTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMV 139
R +E E R +L + ++ IP F+ E KV++
Sbjct: 63 QRRGQE--ERHPPRDNLANL---KLRIPPFH------------------EYTEANKVKVA 99
Query: 140 MIAMEDRALSWFQWWEEQAP---------VRAWEPFKQALIRRFQPELVQNPFGPLLSAK 190
D ALSW W++ + W K + RRF P L
Sbjct: 100 ATEFYDYALSW---WDQVVTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHRELHQRLRNL 156
Query: 191 QKGSVMEYREHFELLAAPMRNADR----EVLKGVFLNGLHEEIKAEMKLYPSEDLADLMD 246
+G+ E+F+ + M AD E F+ GL+ +I ++ E+L +L
Sbjct: 157 VQGN-RTVEEYFKEMETLMLRADVQEECEATMSRFMGGLNRDILDRFEVIHYENLEELFH 215
Query: 247 RALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPNVSYQSKGAGG 306
+A++ E K+ +R K S NS + SYQ + G
Sbjct: 216 KAVMFE-----------KQIKRRSAKP--------SYNSSKP---------SYQREEKSG 247
Query: 307 TQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQRLTQTELQERSRRGLCFKCGEKWGREH 366
Q E KP +K E +++GK E R+R CFKC
Sbjct: 248 FQ-KEYKP-FVKPKVEEISSKGKEKE--------------VTRTRDLKCFKCHGLGHYAS 291
Query: 367 ICAKKNFQLIL----IEGEDEEEEEEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFK 422
C+ K +I +E EDE+ EE EEA GE ++ +VL + ++E F
Sbjct: 292 ECSNKRIMIIRDSGEVESEDEKPEESDVEEAPKGELLVTMRVLSVLNKAEEQAQRENLFH 351
Query: 423 VKGKIGEREILILVDCGATSNFISQELVAEL 453
+ I + +++D G+ +N S+ +V +L
Sbjct: 352 TRCLIKGKVCSLIIDGGSCTNVASETMVQKL 382
Score = 67.8 bits (164), Expect = 5e-11
Identities = 38/98 (38%), Positives = 53/98 (53%), Gaps = 2/98 (2%)
Query: 578 ANVTIPELWIKLLTEFPEVFQE--PKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKN 635
++V + W ++ +VF E P+ LPP R +H I GA +PN YR +
Sbjct: 433 SHVLLGRPWQSDRKDYQDVFPEENPEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETK 492
Query: 636 EIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRF 673
E+EK V E++ G I S SP + P +LV KKDG WRF
Sbjct: 493 ELEKQVNELMERGHICESMSPCAVPVLLVPKKDGSWRF 530
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 370 bits (949), Expect = e-102
Identities = 201/513 (39%), Positives = 315/513 (61%), Gaps = 7/513 (1%)
Query: 464 VVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASL-GNIEANF 522
+V G + + + + + V G+ + I+ L +++LGMDWL G+I+ +
Sbjct: 1 MVRAAGGQAMYPTRLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHR 60
Query: 523 QDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTANVTI 582
+ I++E + + QG + + +G E +L+ + +E A+ +
Sbjct: 61 ER--IQFERDEGMLKFQGIRTTSGSLVISAIQAERMLGKGCEAYLA-TITTKEVGASAEL 117
Query: 583 PELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVK 642
++ I + EF +VF +PP R+ I L+ G + PYR + E++K ++
Sbjct: 118 KDILI--VNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLE 175
Query: 643 EMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIG 702
E+LA G IR S+SP+ +P + VKKKDG +R C+DYR LNKVT+ +K+P+P IDEL+D++G
Sbjct: 176 ELLAKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLG 235
Query: 703 TAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVL 762
A+ FSK+DL SGYHQI + D+ KTAFRT GH+E++V+PFGLTNAP+ F +MN V
Sbjct: 236 GAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVF 295
Query: 763 RPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGH 822
R +L +FV++F DIL++S + + H+EHLR VL+ LR++ L A K SF Q + +LGH
Sbjct: 296 RDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGH 355
Query: 823 VISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN 882
VIS +GV+ DP KI+ + WP P++ +R FLGL GYYRRFV +++ +AQPL +L K+
Sbjct: 356 VISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKD 415
Query: 883 N-FSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYM 941
F+WS ++F +LK ++ PVL +P+ + + + TDAS GLG VLMQ G +AY
Sbjct: 416 TAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYA 475
Query: 942 SKTLSERAQAKSVYERELMAVVLAVQKWRHYLL 974
S+ L + + ++ E+ AVV A++ WR YL+
Sbjct: 476 SRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 268 bits (685), Expect = 2e-71
Identities = 167/421 (39%), Positives = 235/421 (55%), Gaps = 20/421 (4%)
Query: 1080 GRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYV 1139
G ++ R+ +P IL+E H S H G + Y+ + + W GM+ D+ +V
Sbjct: 535 GTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRKDVARWV 594
Query: 1140 QKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGK--DTILVVVDRFT 1197
KC CQ K E P+G LQ LPI W I+MDF+ LP + + + VVVDR T
Sbjct: 595 AKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLT 654
Query: 1198 KYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLK 1257
K AHF+A+S A+ +AE +I EI++LHG P SIVSDRD F S FW+ K GT++
Sbjct: 655 KSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVN 714
Query: 1258 FSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQ 1317
S+AYHPQTDGQ+E + +E LR W K+L EF YN ++ ++I +P++
Sbjct: 715 LSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYE 774
Query: 1318 ALYGRE-------PPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQAN 1370
ALYGR PV G L V++ T ER F LK L++AQ+R K AN
Sbjct: 775 ALYGRACRTPLCWTPV---GERRLFGPTIVDE-TTERMKF---LKIKLKEAQDRQKSYAN 827
Query: 1371 KHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEG 1430
K R++++ +VGD+VYLK YK + +KLSPR+ GPY VIE++ AVAYKL LP
Sbjct: 828 KRRKELEFQVGDLVYLKAMTYKGAGRFTSR-KKLSPRYVGPYKVIERVGAVAYKLDLPPK 886
Query: 1431 SQV-HPVFHVSLLKKAPNEGVNS-QPLPVYMTEEWELKVEPESIIDSRA-GDKGTVEVLV 1487
V H VFHVS L+K ++ S + +P + E ++ P I+D + G +G L+
Sbjct: 887 LNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMSKGTRGKSRDLL 946
Query: 1488 K 1488
K
Sbjct: 947 K 947
>At4g16910 retrotransposon like protein
Length = 687
Score = 364 bits (934), Expect = e-100
Identities = 241/681 (35%), Positives = 353/681 (51%), Gaps = 57/681 (8%)
Query: 871 LAQPLNQLLKKNN-FSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGA 929
+AQP+ QL K+ F+WS ++F +LK ++T PVL +P+ + + + TDAS GLG
Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60
Query: 930 VLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRF 989
VL+Q G +AY S+ L + + + E+ AVV A++ WR YL G K + TD KSL++
Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120
Query: 990 LAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSR------------------- 1030
+ Q + Q++W+ + +D I Y PG N+ DALSR
Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAERNQVNLVNMMG 180
Query: 1031 KLQFSAISS------VQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLY 1084
L +A+S ++ + DL + I + + + I+ Q G ++
Sbjct: 181 TLHLNALSKEVEPLGLRAANQADLLSRIRSAQERDEEIKG-WAQNNKTEYQSSNNGTIVV 239
Query: 1085 KNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEI 1144
R+ P IL+E H S H G + Y+ + + W GMK D+ +V K
Sbjct: 240 NGRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAK--- 296
Query: 1145 CQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGK--DTILVVVDRFTKYAHF 1202
E P+G LQ LPIP W I MDF+ GLP + + + VVVDR TK AHF
Sbjct: 297 -----EEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHF 351
Query: 1203 LALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAY 1262
+A+S A+ +AE +I EIV+LHG P SIVSDRD F S FW K+ GT++ S+AY
Sbjct: 352 MAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAY 411
Query: 1263 HPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGR 1322
HPQTDGQ+E + +E LR W K+L EF YN ++ ++I +P++ALYGR
Sbjct: 412 HPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGR 471
Query: 1323 E-------PPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRD 1375
PV + A V+E K + LK L++AQ+R K ANK R++
Sbjct: 472 AGRTPLCWTPVGERRLFGPAVVDETTKK-------MKFLKIKLKEAQDRQKSYANKRRKE 524
Query: 1376 IQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQL-PEGSQVH 1434
++ +VGD+VYLK YK + +KL PR+ GPY VIE++ AVAYKL L P+ H
Sbjct: 525 LEFQVGDLVYLKAMTYKGAGRFTSR-KKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFH 583
Query: 1435 PVFHVSLLKKAPNEGVNS-QPLPVYMTEEWELKVEPESIIDS-RAGDKGTVEVLVK--WK 1490
VFHVS L+K +E S + +P + E ++ P I+D + G +G L+K W
Sbjct: 584 NVFHVSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWN 643
Query: 1491 NMPEFENSWEDYTELLEQFPE 1511
E +WE T++ FPE
Sbjct: 644 CGGREEYTWETETKMKANFPE 664
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 304 bits (778), Expect = 3e-82
Identities = 257/885 (29%), Positives = 395/885 (44%), Gaps = 132/885 (14%)
Query: 634 KNEIEKLVKEMLAAGIIRH-STSPFSSPAILVKKKDG------------------GWRFC 674
K ++K + ++L AG+I S S + SP V KK G G R C
Sbjct: 912 KEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMC 971
Query: 675 VDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTH 734
++YR LN + + FP+P ID +L+ + + LD SG+ QI + D KT F
Sbjct: 972 IEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCP 1031
Query: 735 EGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREV 794
G + Y +PFGL NAP+TFQ M + + + V VF D +Y ++ +L V
Sbjct: 1032 YGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRV 1091
Query: 795 LQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGF 854
L+ + +LV N +KC F E I LG IS+EG+ D +KI M+ PK VK +R F
Sbjct: 1092 LKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSF 1151
Query: 855 LGLTGYYRRFVRNYSKLAQPLNQLL-KKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQ 913
LG G+YR F++++SKLA+PL +LL K+ F++ AF +KE + T P++ P++
Sbjct: 1152 LGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWD 1211
Query: 914 KTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAK-SVYERELMAVVLAVQKWRHY 972
F + T + AQ + + E+EL+AVV A +K+R Y
Sbjct: 1212 FPFEIIT-------------------------MDDAQVRYATTEKELLAVVFAFEKFRSY 1246
Query: 973 LLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSR-K 1031
L+G K ++TD +LR + ++ +W+ L FD EI K GIEN AD LSR +
Sbjct: 1247 LVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGVADHLSRMR 1306
Query: 1032 LQFSAISSVQCEDWEDLETEILADDKYQKIIQEIT-----TQGPVPAGYHMRRG------ 1080
++ + + + + + L + K + + P + Y ++
Sbjct: 1307 IEDEVLIDDSMPEEQLMAIQQLNEKKLPWYADHVNYLVSGEEPPNLSSYEKKKFFKDINH 1366
Query: 1081 --------RLLYKNRIVLPKTS-GKIPIILQEFHDSAVGGHAGIFRTYKRI-SALFFWEG 1130
L K++I S +I IL H A GGH F+T +I A F+W
Sbjct: 1367 FYWDEPYLYTLCKDKIYRTCVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPS 1426
Query: 1131 MKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTIL 1190
M D Q ++ KC+ +E + VW +DF+G P + G IL
Sbjct: 1427 MFKDAQEFISKCD-----SFENFD-------------VW---GIDFMGPFPSSYGNKYIL 1465
Query: 1191 VVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFK 1250
V +D +K+ +A SH +A+ V +LF I G P ++SD + F++ + L K
Sbjct: 1466 VAIDYVSKWVEAIA-SHTNDARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLK 1524
Query: 1251 LAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSA 1310
G K K T GQ E+ NR ++ L G+ K W L+ + Y T + +
Sbjct: 1525 KHGVKHK--------TSGQVEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTP 1576
Query: 1311 IKTTPFQALYGREPPVII----KGTDSLASVNEVEKMTAERNLFL--DTLKENLEKAQN- 1363
I TTPF LYG+ + + K ++ +N K E+ L D K LE ++
Sbjct: 1577 IGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESS 1636
Query: 1364 -----RMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKI 1418
R K +K KVGD V L S R KL R+ GP+ V
Sbjct: 1637 KIYKERTKSFHDKKIVSRDFKVGDQVLL------FNSRLRLFPGKLKSRWSGPFSV---- 1686
Query: 1419 NAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEW 1463
+ V P ++L K + VN Q L YM +++
Sbjct: 1687 ------------TAVRPYGAITLAGKNGDFTVNGQRLKKYMIDQF 1719
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 295 bits (754), Expect = 2e-79
Identities = 151/318 (47%), Positives = 203/318 (63%), Gaps = 5/318 (1%)
Query: 1208 PYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTD 1267
P ++ VA F+ +VKLHG P SIVSD D +F+S FW E +KL+ TKL S+AYHPQTD
Sbjct: 628 PLLSRSVAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTD 687
Query: 1268 GQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVI 1327
GQTEVVNRC+E +LRC PKQW ++ WAE+WYNT +H++ TPFQALYGR P I
Sbjct: 688 GQTEVVNRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRPPSPI 747
Query: 1328 IKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLK 1387
E+ + A R+ L LK++L A N MKQQA+ RD+ +VGD V L+
Sbjct: 748 PAYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLR 807
Query: 1388 IQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPN 1447
IQPY+ K+L RR +QKLS RFYGP+ V K VAY+L LPEG+++HPVFHVSLLK
Sbjct: 808 IQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRIHPVFHVSLLKPWVG 867
Query: 1448 EGVNSQPLPVYMTEEWELKVEPESIIDSR---AGDKGTVEVLVKWKNMPEFENSWEDYTE 1504
+G + ELK++P ++++ R K ++LV+W+ + + +WE+Y +
Sbjct: 868 DGEPDMGQLPPLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQ 927
Query: 1505 LLEQFPEH--HLEDKVIL 1520
L FPE +LEDKV L
Sbjct: 928 LAASFPEFVLNLEDKVRL 945
Score = 219 bits (557), Expect = 1e-56
Identities = 133/393 (33%), Positives = 210/393 (52%), Gaps = 40/393 (10%)
Query: 383 EEEEEEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATS 442
E ++E V EE+ + E GK +++L + EG+ + + +V+ I ++ L++ G+T
Sbjct: 285 ENDDEAVEEESTEAE----GKP-EITLYALEGVDTTSTIRVRATIHRNRLIALINSGSTH 339
Query: 443 NFISQELVAELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGG 502
NFI ++ V + + T + V V NG + + + + G+ + L L G
Sbjct: 340 NFIGEKAVRGMNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLYALPLMG 399
Query: 503 TELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEG 562
+L +G+ WL++LG N+++ +++ G ++ + G K+I K
Sbjct: 400 LDLAMGVQWLSTLGPTLCNWKEQTLQFHWAGDEVRLMGIKPTGLRGVEHKTITKKARMGH 459
Query: 563 EEYFLSYECSEEEPTANVTIPELWIK-LLTEFPEVFQEPKELPPKRATDHAILLQEGAPI 621
+ ++ + +P P+ IK L+ EF +F+ P +LP +R H I L++G
Sbjct: 460 TIFAITMAHNSSDPNT----PDGEIKKLIEEFAGLFETPTQLPSERPIVHRIALKKGTDP 515
Query: 622 PNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALN 681
N+RPYRY FYQK+E+ + AGIIR S+SPF SP +L
Sbjct: 516 VNVRPYRYAFYQKDEMSR-------AGIIRPSSSPFLSPVLL------------------ 550
Query: 682 KVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYL 741
++FPIP +D++LDE+ A F+KLDL +GY Q+RM DIPK AF+TH GHYEYL
Sbjct: 551 -----ERFPIPTVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAFQTHNGHYEYL 605
Query: 742 VLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFF 774
V+PFGL NAPSTFQALMN++ P L + V F
Sbjct: 606 VMPFGLCNAPSTFQALMNEIFWPLLSRSVAAKF 638
Score = 55.8 bits (133), Expect = 2e-07
Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 54/270 (20%)
Query: 4 TRSAMESRVDNLERSITEMK---EEAHEQFEE-LRRLFMSRERRRTRGRSNTPRHRRVSR 59
++ M+ + + ++ ++K E+ H + EE L L + +R + G + + RR R
Sbjct: 14 SQDMMQDEMQRMTVAMVDLKGDNEDRHRRLEEALAHLIEAVTQRESGGSAASRGSRRTER 73
Query: 60 DHNSVSLARSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGNDAYGWIT 119
+ TG+R P + ++ ++D P F+G D W++
Sbjct: 74 NQFQ----------STGNRG--EPDNPFAAVTANNNNAIARPSKLDFPRFHGGDLTKWLS 121
Query: 120 KVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRAWEPFKQALIRRFQPELV 179
K +++F + V ++ A W+Q A +RR
Sbjct: 122 KAKQYFEYHEGPVEQAVRFTTFHLDGVANGWWQ----------------ATLRRSA---- 161
Query: 180 QNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSE 239
+ Q GS+ EY+ FE L + +EVL G F+NGL+ I ++++
Sbjct: 162 --------TIGQTGSLSEYQHEFEWLQNKVYGWTQEVLVGAFMNGLYYSISNGIRMFQPR 213
Query: 240 DLADLMDRALLLEEKNSAMRGGKSKEEDKR 269
L ++++ + G K K +D+R
Sbjct: 214 SLREVINLRV----------GWKGKSKDRR 233
>At4g08100 putative polyprotein
Length = 1054
Score = 283 bits (724), Expect = 5e-76
Identities = 147/342 (42%), Positives = 205/342 (58%), Gaps = 29/342 (8%)
Query: 676 DYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHE 735
D RA+N +T+ + PIP +D+ LD++ + IFSK+DLKSGYHQ RM+E D KTA +T +
Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586
Query: 736 GHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVL 795
YE+LV+PFGLTNAP+TF LMN VLR ++ FV+V+F DIL+YS N++ H HL+ VL
Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646
Query: 796 QVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFL 855
+LR L AN KKC+F L++LG V+S +G+ D K+K + WP PK+V
Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNVSE----- 701
Query: 856 GLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKT 915
K F W AF LKE +T V +P+F K+
Sbjct: 702 ------------------------KDIGFKWEDAQENAFQALKEKLTNSSVPILPNFMKS 737
Query: 916 FVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLG 975
F +E DASG G+GAVLMQ +P+AY S+ L Y++EL A+V A+Q W+HYL
Sbjct: 738 FEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWP 797
Query: 976 CKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYK 1017
KF++HTD +SL+ L Q+ + + +WV + F + IKYK
Sbjct: 798 KKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYK 839
Score = 60.8 bits (146), Expect = 6e-09
Identities = 47/169 (27%), Positives = 85/169 (49%), Gaps = 14/169 (8%)
Query: 1308 HSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKE--NLEKAQNRM 1365
HSA K +PF+ +YG +P + L + E+ + + D +++ NLE +
Sbjct: 851 HSATKFSPFEIVYGFKPTSPL----DLIPLPLSERSSLDGKKKDDLVQQVLNLEARTKQY 906
Query: 1366 KQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKL 1425
K+ ANK R+++ GD V++ ++ + + ++ KL PR GP+ V+++IN AYKL
Sbjct: 907 KKYANKGRKEVIFNEGDQVWVHLRKKRFPEV---RSSKLMPRIDGPFKVLKRINNNAYKL 963
Query: 1426 QLPEGSQVHP-VFHVSLLKKAPNEGVNSQPLPVYMTEEWELKVEPESII 1473
L + S + F V +E + + P+ E+ E V E++I
Sbjct: 964 DLQDTSDLRTNPFQVG----EDDENMTNATKPLEPQEDEEQLVPEEALI 1008
Score = 58.5 bits (140), Expect = 3e-08
Identities = 90/387 (23%), Positives = 147/387 (37%), Gaps = 85/387 (21%)
Query: 48 RSNTPRHRRVSRDHNSVSLARSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIP 107
R PR +R N S A S R R R+P + G ++ IP
Sbjct: 52 RQEEPREDEEAR--NYYSHASSHSSQRRHRRERPPPRDP------------LGGLKLKIP 97
Query: 108 MFNGNDA----YGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEE------- 156
F+G D W K+E F ++ KV++ + ALS WW++
Sbjct: 98 AFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALS---WWDQLVTSRRR 154
Query: 157 --QAPVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGS--VMEYREHFE--LLAAPMR 210
P++ W K + +RF P L +GS V EY E +L A ++
Sbjct: 155 TRDYPIKTWNQLKFVMRKRFVPSYYHRELHQRLRNLVQGSKTVEEYFLEMETLMLRADLQ 214
Query: 211 NADREVLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRG 270
D E + F+ GL+ EI+ ++ +L +++ +A++ E++
Sbjct: 215 E-DGEAVMSRFMGGLNREIQDRLETQHYVELEEMLHKAVMFEQQIK-------------- 259
Query: 271 WKEKGGFGGRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKI 330
R + S T+ SYQ + G Q N+ KP +K + + +GK
Sbjct: 260 ---------RKNARSSHTKTNYSSGKPSYQKEEKFGYQ-NDSKP-FVKPKPVDLDPKGK- 307
Query: 331 PERKWNGGQRLTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLIL-------IEGEDE 383
E+ R+R CFK G H +K + + I+ +E +DE
Sbjct: 308 ------------GKEVITRARDIRCFK---SQGLRHYASKCSNKRIMVHRDNGEVESKDE 352
Query: 384 EEEEEVFEEAEDGEFVLEGKVLQLSLN 410
EE+ E ED E G+ + SL+
Sbjct: 353 SAEEDSME--EDVESPARGEFARRSLS 377
>At4g03650 putative reverse transcriptase
Length = 839
Score = 275 bits (704), Expect = 1e-73
Identities = 131/297 (44%), Positives = 197/297 (66%), Gaps = 1/297 (0%)
Query: 721 MREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIY 780
+ E D+ KTAFRT GH+E++V+PFGLTNAP+ F LMN V + +L +FV++F DIL+Y
Sbjct: 516 LAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 575
Query: 781 SNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDML 840
S + + H+ HLR V++ LR+ L A KCSF Q E+ +LGH++S EGV+ DP KI+ +
Sbjct: 576 SKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIR 635
Query: 841 NWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKN-NFSWSAGATQAFDKLKE 899
+WP P + +R FLGL GYYRRF++ ++ +AQP+ +L K+ F WS + F LKE
Sbjct: 636 DWPRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKE 695
Query: 900 IMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYEREL 959
++T+ PVLA+P+ + +++ TDASG GLG LMQ G+ +AY S+ L + ++ E+
Sbjct: 696 MLTSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEM 755
Query: 960 MAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKY 1016
AV+ A++ WR YL G K V TD KSL+++ Q + Q++W+ + +D EI Y
Sbjct: 756 AAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAY 812
Score = 35.0 bits (79), Expect = 0.34
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 587 IKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLA 646
I+++ EF VFQ + LPP R+ I L+ + PYR + E++K ++++LA
Sbjct: 458 IRVVQEFQYVFQSLQGLPPSRSDPFTIELEPKTAPLSKAPYRMAPAKMAELKKQLEDLLA 517
Query: 647 AGIIR 651
+R
Sbjct: 518 EADVR 522
Score = 34.7 bits (78), Expect = 0.44
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 1253 GTKLKFSSAYHPQTDGQTE 1271
GTK++ S+ YHPQTDGQ+E
Sbjct: 818 GTKVQMSTTYHPQTDGQSE 836
Score = 31.6 bits (70), Expect = 3.8
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 16/165 (9%)
Query: 102 RRVDIPMFNGN----DAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQ 157
+R+ F+G +A W ++VER F SR +V++ + +E A WW
Sbjct: 149 QRIGTEYFSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDA---HLWWRSV 205
Query: 158 APVR-----AWEPFKQALIRRFQP-ELVQNPFGPLLSAKQ-KGSVMEYREHFE--LLAAP 208
R +W F ++ P E + L Q SV EY F L+ A
Sbjct: 206 TARRRQADMSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAG 265
Query: 209 MRNADREVLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEE 253
D + FL GL ++ ++ A L++ A +EE
Sbjct: 266 RGMEDDQAQMRRFLRGLRPNLRVRCRVSQYATKAALVETAAEVEE 310
>At4g07830 putative reverse transcriptase
Length = 611
Score = 263 bits (673), Expect = 5e-70
Identities = 189/611 (30%), Positives = 291/611 (46%), Gaps = 79/611 (12%)
Query: 932 MQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLA 991
MQ G+ +AY S+ L + ++ E+ AV TD KSL+++
Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAVF------------------TDHKSLKYIF 42
Query: 992 EQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRK-------------------L 1032
Q + ++W+ + +D EI Y PG N DALSRK L
Sbjct: 43 TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETLVIEIGAL 102
Query: 1033 QFSAIS----SVQCEDWEDLETEI-LADDKYQKIIQEITTQGPVPAGYHMR-RGRLLYKN 1086
+ A++ ++ D DL + + LA +K + +I +G Y G +L
Sbjct: 103 RLCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAEG---FEYQFAANGTILVHG 159
Query: 1087 RIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQ 1146
R+ +PK IL E H S H G + Y+ + + W GMK D+ +V++C++CQ
Sbjct: 160 RVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQ 219
Query: 1147 RNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALS 1206
K E LQ LPIP W I+MDF+ GLP + KD I V+VDR TK AHFLA+
Sbjct: 220 LVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIR 279
Query: 1207 HPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQT 1266
A +A+ ++ EIVKLHG P SIVSDRD F S+FW GTK++ S+AYHPQT
Sbjct: 280 KTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQT 339
Query: 1267 DGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPV 1326
DGQ+E + +E LR W LS EF YN +Y ++I PF+ LYGR
Sbjct: 340 DGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRT 399
Query: 1327 II---KGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDM 1383
+ G S+ + V+++T + LK N+++AQNR + A+K R++++ +VGD
Sbjct: 400 LCWTQVGERSIYGADYVQEITER----IRVLKLNMKEAQNRQRSYADKRRKELEFEVGDS 455
Query: 1384 VYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQV-HPVFHVSLL 1442
V R Q++ P VA++L+L + + H VFHVS+L
Sbjct: 456 V-------SQDGHVARSEQRVGP--------------VAFRLELSDVMRAFHKVFHVSML 494
Query: 1443 KKAPNEGVN-SQPLPVYMTEEWELKVEPESIIDSRAGD--KGTVEVLVKWKNMPEF-ENS 1498
+K ++ +P + L+ P +++ R + + + ++ +N E +
Sbjct: 495 RKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLRNCDGVTEET 554
Query: 1499 WEDYTELLEQF 1509
WE L +F
Sbjct: 555 WEPEARLKARF 565
>At1g20390 hypothetical protein
Length = 1791
Score = 221 bits (562), Expect = 3e-57
Identities = 139/419 (33%), Positives = 221/419 (52%), Gaps = 13/419 (3%)
Query: 636 EIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIID 695
E+EKL+K A II + + ++VKKK+G WR CVDY LNK D +P+P ID
Sbjct: 796 EVEKLLK---AGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHID 852
Query: 696 ELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQ 755
L++ + S +D SGY+QI M ++D KT+F T G Y Y V+ FGL NA +T+Q
Sbjct: 853 RLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQ 912
Query: 756 ALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQS 815
+N++L + + V V+ D+L+ S + H EHL + VL + N KC+FG +
Sbjct: 913 RFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVT 972
Query: 816 ELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPL 875
+LG+V++K G+ A+P +I+ +L P P++ + ++ G RF+ + P
Sbjct: 973 SGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPF 1032
Query: 876 NQLLKKN-NFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQG 934
LLK+ F W + +AF+KLK+ ++T P+L P+ +T L S + +VL++
Sbjct: 1033 YNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVRE 1092
Query: 935 G----RPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFL 990
RP+ Y SK+L E V E+ +AVV + +K R Y V TDQ LR
Sbjct: 1093 DRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVA 1151
Query: 991 AEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKA-ADAL-SRKLQFS--AISSVQCEDW 1045
KW +L +D + + +P ++++ AD L LQ + A+S + E+W
Sbjct: 1152 LHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEEW 1210
Score = 109 bits (273), Expect = 1e-23
Identities = 97/360 (26%), Positives = 153/360 (41%), Gaps = 24/360 (6%)
Query: 1100 ILQEFHDSAVGGHAGIFRTYKRISAL-FFWEGMKLDIQTYVQKCEICQRNKYETLNPAGY 1158
I++E H+ A G H+G ++ L F+W M D +T+ KCE CQR+ P
Sbjct: 1438 IMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTEL 1497
Query: 1159 LQP--LPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAE 1216
L+ P P W+ MD +G +P + K ILV+ D FTK+ + + A +V
Sbjct: 1498 LRAGVAPYPFMRWA---MDIVGPMPASRQKRFILVMTDYFTKWVEAESYA-TIRANDVQN 1553
Query: 1217 LFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRC 1276
K I+ HG P I++D F+S + +L S+ +PQ +GQ E N+
Sbjct: 1554 FVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKT 1613
Query: 1277 VETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIK-GTDSLA 1335
+ + L+ K W L + Y T SA TPF YG E + G SL
Sbjct: 1614 ILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLR 1673
Query: 1336 SVNEVEKMTAERNLFLDTLKENLEKAQN-----------RMKQQANKHRRDIQLKVGDMV 1384
V+ + LD L ++LE+ +N + N+ + VGD+V
Sbjct: 1674 RSMMVKNPELNDRMMLDRL-DDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLV 1732
Query: 1385 YLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKK 1444
K+ ++ A KL + G Y V + + Y+L G+ V ++ LK+
Sbjct: 1733 LRKV----FENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKR 1788
>At4g04230 putative transposon protein
Length = 315
Score = 191 bits (484), Expect = 4e-48
Identities = 95/172 (55%), Positives = 123/172 (71%)
Query: 648 GIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIF 707
G IR S SP + P +LV KKDG WR C+D RA+N +TI + PIP + ++LDE+ A IF
Sbjct: 128 GYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAIIF 187
Query: 708 SKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLR 767
SK+DL+SGYHQ+RMRE D KTAF+T +G YE LV+PFGLTNAPSTF LMNQVLR ++
Sbjct: 188 SKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFIG 247
Query: 768 KFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIY 819
KFV+V+F DILIY+ + H + L +L+ LR L AN KKC+F + +
Sbjct: 248 KFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSDKFFF 299
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,378,560
Number of Sequences: 26719
Number of extensions: 1695484
Number of successful extensions: 6654
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 6232
Number of HSP's gapped (non-prelim): 270
length of query: 1555
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1443
effective length of database: 8,326,068
effective search space: 12014516124
effective search space used: 12014516124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0045.8