BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.13
(342 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31080 putative non-LTR retroelement reverse transcriptase 199 1e-51
At3g32110 non-LTR reverse transcriptase, putative 186 2e-47
At2g22350 putative non-LTR retroelement reverse transcriptase 181 7e-46
At2g07730 putative non-LTR retroelement reverse transcriptase 166 2e-41
At2g27870 putative non-LTR retroelement reverse transcriptase 164 6e-41
At5g33360 putative protein 146 1e-35
At1g17390 hypothetical protein 141 4e-34
At4g08830 putative protein 121 5e-28
At2g02650 putative reverse transcriptase 105 5e-23
At1g47320 hypothetical protein 105 5e-23
At2g31520 putative non-LTR retroelement reverse transcriptase 99 4e-21
At2g01840 putative non-LTR retroelement reverse transcriptase 99 4e-21
At3g09510 putative non-LTR reverse transcriptase 98 6e-21
At2g25550 putative non-LTR retroelement reverse transcriptase 97 1e-20
At4g15580 splicing factor like protein 87 1e-17
At1g26950 hypothetical protein 87 1e-17
At4g29090 putative protein 86 4e-17
At2g15510 putative non-LTR retroelement reverse transcriptase 83 2e-16
At3g29820 hypothetical protein 78 6e-15
At2g34320 putative non-LTR retroelement reverse transcriptase 78 6e-15
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 199 bits (507), Expect = 1e-51
Identities = 117/341 (34%), Positives = 167/341 (48%), Gaps = 12/341 (3%)
Query: 2 NPGLSWHHIWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHL 61
N G ++ IWK P +V F+W V N I N R R ++ +++C +CN ETI+H+
Sbjct: 898 NMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHV 957
Query: 62 LRDCACVRPLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIW 121
LRDC + P+W++L+P F + L WL + P+ G FG+ +W W
Sbjct: 958 LRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMD-----PVKGIWPTLFGMGIWWAW 1012
Query: 122 TSRSCFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQ--VGWSPPP 179
R C VF K+ L+ D + A+ R + V+ + W P
Sbjct: 1013 KWRCCDVFGE-----RKICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPS 1067
Query: 180 PAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLA 239
WVK TDG+ RG LAA GG R+ G WL GF N+G+ AELWG + + +A
Sbjct: 1068 DGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIA 1127
Query: 240 WDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSV 299
WD+G R+ ++ D + V ++ G HP ++ + + RDW + H REAN +
Sbjct: 1128 WDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRL 1187
Query: 300 ADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRA 340
AD LAN A L G+H D P V LLL DV G PRA
Sbjct: 1188 ADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPRA 1228
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 186 bits (471), Expect = 2e-47
Identities = 108/324 (33%), Positives = 156/324 (47%), Gaps = 8/324 (2%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
+WK P +V FLW V+N I N R R + +C +C E+I+H+LRDC +
Sbjct: 1582 VWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMS 1641
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVF 129
+W ++VP L Q+F L WL LR L+ G F + +W W R +F
Sbjct: 1642 GIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTE-GSDWSTMFAMAVWWGWKWRCSNIF 1700
Query: 130 QGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQ--VGWSPPPPAWVKCNT 187
+K +R D ++ + + R S V + W+PP W K NT
Sbjct: 1701 GE-----NKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINT 1755
Query: 188 DGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRL 247
DG+ RG LA+ GGV R+S G W GF N+G + AELWG++ + +AW + + L
Sbjct: 1756 DGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHL 1815
Query: 248 VVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMA 307
+E DS V V + G HP ++ + +DW + H REANS+AD LAN A
Sbjct: 1816 ELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRISHVYREANSLADGLANHA 1875
Query: 308 HDLDFGIHILDYPPPRVSNLLLFD 331
L G+H+ D P + LL D
Sbjct: 1876 FSLSLGLHVFDEIPISLVMLLSED 1899
>At2g22350 putative non-LTR retroelement reverse transcriptase
Length = 321
Score = 181 bits (458), Expect = 7e-46
Identities = 108/332 (32%), Positives = 158/332 (47%), Gaps = 25/332 (7%)
Query: 16 PFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRPLWQQL 75
P +V FLW V+ I N R+R ++ +C +C ETI+H+LRDC + +W +L
Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62
Query: 76 VPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVFQGVPFD 135
VP + F + L W+ LR G F + +W W R +F G
Sbjct: 63 VPRDQIRQFFTASLLEWIYKNLRER------GSWPTVFVMAVWWGWKWRCGNIFGG---- 112
Query: 136 LHKVLTSGLRQQLDYVHCRNMMQNPALPR--------RASYHTVQVGWSPPPPAWVKCNT 187
R ++ ++ +++ + A+ R S V W P WVK NT
Sbjct: 113 -----NGKCRDRVKFI--KDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNT 165
Query: 188 DGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRL 247
DG+ RG A GGV RD G W+ GF N+G + AELWG++ + +AW RG R+
Sbjct: 166 DGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRV 225
Query: 248 VVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMA 307
+E DS + V + G HP ++ + + W + H REAN +AD LAN A
Sbjct: 226 ELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYA 285
Query: 308 HDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
L G+H+L+ P VS++LL DV G S PR
Sbjct: 286 FSLSLGLHLLESRPDVVSSILLDDVAGVSYPR 317
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 166 bits (420), Expect = 2e-41
Identities = 105/332 (31%), Positives = 155/332 (46%), Gaps = 12/332 (3%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
IWK P +V F+W V + I N R R ++ + C +CN E+I+H+LRDC +
Sbjct: 647 IWKLVAPERVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMT 706
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVF 129
P+WQ+L+P F + WL L P G F + +W W R VF
Sbjct: 707 PIWQRLLPQRRQNEFFSQ--FEWLFTNLD-----PAKGDWPTLFSMGIWWAWKWRCGDVF 759
Query: 130 QGVPFDLHKV-LTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCNTD 188
++ + +++ H + + +RA + + W P WVK TD
Sbjct: 760 GERKLCRDRLKFIKDIAEEVRKAHVGTLNNHV---KRARVERM-IRWKAPSDRWVKLTTD 815
Query: 189 GSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRLV 248
G+ RG LAA G + G WL GF N+G+ + AELWG + + +AWD+G R+
Sbjct: 816 GASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVE 875
Query: 249 VESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAH 308
+ DS + V ++ G HP ++ + + RDW + H REAN +AD LAN A
Sbjct: 876 LNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAF 935
Query: 309 DLDFGIHILDYPPPRVSNLLLFDVMGGSLPRA 340
L G H + P V L+ D G S PRA
Sbjct: 936 FLPLGFHCFEICPEDVLLFLVEDANGTSFPRA 967
>At2g27870 putative non-LTR retroelement reverse transcriptase
Length = 314
Score = 164 bits (415), Expect = 6e-41
Identities = 103/317 (32%), Positives = 146/317 (45%), Gaps = 13/317 (4%)
Query: 31 IWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRPLWQQLVPGHLFQAFIASDLC 90
+ N R R ++ +C +C +TIIH+LRDC + +W +LVP + F L
Sbjct: 5 LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLL 64
Query: 91 PWL---LGQLRSSLLAPIGGGVVPDFGLLLWNIWTSR--SCFVFQGVPFDLHKVLTSGLR 145
WL LG R + + F L +W W R + F Q D + L L
Sbjct: 65 EWLFANLGDRRKTCESTWS----TLFALSIWWAWKWRCGNIFGVQDKCRDRVRFL-KDLA 119
Query: 146 QQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCR 205
++ H + R + WS P W K NTDG+ RG LA+ GGV R
Sbjct: 120 RETSMAHVIVRTLSGGHGERVER---LIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLR 176
Query: 206 DSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSD 265
D G W GF N+G + AELWG++ + +AW+R V RL +E DS + V + G +
Sbjct: 177 DEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGIN 236
Query: 266 VLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAHDLDFGIHILDYPPPRVS 325
+HP ++ + RDW + H REAN +AD LAN A L G H L P +
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLR 296
Query: 326 NLLLFDVMGGSLPRATR 342
+LL D G ++ R R
Sbjct: 297 FILLDDTSGATVSRQVR 313
>At5g33360 putative protein
Length = 306
Score = 146 bits (369), Expect = 1e-35
Identities = 72/171 (42%), Positives = 94/171 (54%)
Query: 172 QVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWG 231
QV WS P W K NTDG+ G LA GG R+ YG W FGF N+G + AELWG
Sbjct: 135 QVRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELWG 194
Query: 232 IFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVH 291
++ + +AWDRG+ RL +E DS + V + G HP ++ + RDW + H
Sbjct: 195 VYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGH 254
Query: 292 ACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
REAN +ADELAN A DL G H PP + ++L D +G S+PR R
Sbjct: 255 VYREANRLADELANYAFDLPLGYHGFASPPSSLDSILRDDELGTSVPRLVR 305
>At1g17390 hypothetical protein
Length = 322
Score = 141 bits (356), Expect = 4e-34
Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 20/277 (7%)
Query: 71 LWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVFQ 130
+W +L+P +F + L W+ L + G F +W W R
Sbjct: 4 IWTRLLPVRRLSSFFSKSLLEWIYANLGEEIEIN-GCPWAVTFSQAIWWGWKWR-----Y 57
Query: 131 GVPFDLHKVLTSGLR----QQLD----YVHCRNMMQNPALPRRASYHTVQVGWSPPPPAW 182
G F +K +R + LD +VH + A R + WSPP W
Sbjct: 58 GNIFGENKKCRDRVRFIKDRALDVWKAHVHKMGVTTRTAREERL------IAWSPPRVGW 111
Query: 183 VKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDR 242
K NTDG+ RG LA GGV RD G W +GF N+G + AELWG + + +AW+R
Sbjct: 112 FKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWER 171
Query: 243 GVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADE 302
GV +L +E DS + V + G D HP ++ +DW + H REAN +AD
Sbjct: 172 GVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADG 231
Query: 303 LANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
LAN A L G H+ + P V +++ DV G + PR
Sbjct: 232 LANYAFFLPLGFHLFNSTPDIVMSIVHDDVAGSAYPR 268
>At4g08830 putative protein
Length = 947
Score = 121 bits (304), Expect = 5e-28
Identities = 80/268 (29%), Positives = 117/268 (42%), Gaps = 22/268 (8%)
Query: 2 NPGLSWHHIWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHL 61
N + +W+ +V FLW + + S+C +C ETI+H+
Sbjct: 688 NMAAFFDRLWRVVALERVKTFLWHIGDT----------------SVCQVCKGGDETILHV 731
Query: 62 LRDCACVRPLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIW 121
L+DC + +W++LV F L WL L A G F +++W W
Sbjct: 732 LKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVNLGMKN-AETGYAWATLFAIVVWWSW 790
Query: 122 TSRSCFVFQGVPFDLHKV-LTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPP 180
R +VF V +V L ++ + H + QN L R V W PP
Sbjct: 791 KWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIHS-QNGGLRTRVER---LVAWKPPDG 846
Query: 181 AWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAW 240
WVK NTDG+ RG LA GGV RD G W GF ++G + AELWG++ + +AW
Sbjct: 847 EWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAW 906
Query: 241 DRGVPRLVVESDSSVAVKLINEGSDVLH 268
+R R+ +E DS + V + G H
Sbjct: 907 ERRFTRVELEVDSELVVGFLTTGISDTH 934
>At2g02650 putative reverse transcriptase
Length = 365
Score = 105 bits (261), Expect = 5e-23
Identities = 88/331 (26%), Positives = 139/331 (41%), Gaps = 16/331 (4%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
IWK K+ +FLWR + + N R + D +C C E ETI H++ +C +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 70 PLWQQ--LVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCF 127
+W+ ++ G+ + + + L QL + +P + ++W +W SR+ F
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFW--IMWRLWKSRNVF 154
Query: 128 VFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVG------WSPPPPA 181
+FQ G++ ++++ +N + + + +Q W+PPP
Sbjct: 155 LFQQKCQSPDYEARKGIQDATEWLNANETTENTNV--HVATNPIQTSRRDSSQWNPPPEG 212
Query: 182 WVKCNTDGSVRGTSNLAACGGVCRDSYGR-WLFGFCRNLGTSNVLWAELWGIFSVIQLAW 240
WVKCN D S G R+ G L G + ++ L AE G +Q+ W
Sbjct: 213 WVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIW 272
Query: 241 DRGVPRLVVESDSSVAVKLINEGSDVLHP-YGGMISQIRQWKDRDWDFQCVHACREANSV 299
G+ + ESDS V LIN G D H G +I IR W + RE NS
Sbjct: 273 AHGLRYVWFESDSKSLVTLINNGED--HSLLGTLIYDIRHWMLKLPYCSLEFVNRERNSA 330
Query: 300 ADELANMAHDLDFGIHILDYPPPRVSNLLLF 330
AD LA+ H D PP + N L +
Sbjct: 331 ADALASHVHARDPLFQSYTTPPSWLVNTLYY 361
>At1g47320 hypothetical protein
Length = 259
Score = 105 bits (261), Expect = 5e-23
Identities = 58/157 (36%), Positives = 79/157 (49%), Gaps = 3/157 (1%)
Query: 183 VKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDR 242
+K NTDG+ RG LA GGV +D+ GRW GF N+G S+ AELWG + + LAW+R
Sbjct: 101 LKINTDGASRGNPGLATAGGVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLAWER 160
Query: 243 GVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADE 302
+ +E DS + V + G HP ++ + +DW + H REAN AD
Sbjct: 161 KSSHIELEVDSEIVVGFLKTGISDHHPLSFLVRLCHGFISKDWRVRIFHVYREANRFADG 220
Query: 303 LANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
LAN L G H + P V D +G + PR
Sbjct: 221 LANYVFSLPLGFH---FVPNVVDLFWKEDNLGVTCPR 254
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 98.6 bits (244), Expect = 4e-21
Identities = 78/300 (26%), Positives = 125/300 (41%), Gaps = 15/300 (5%)
Query: 13 WDGPF--KVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRP 70
W+ P K+ +FLWR L+ + R GM +D +CP C+ E+E+I H L C
Sbjct: 1203 WNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATM 1262
Query: 71 LWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLL-----WNIWTSRS 125
W + +++D + S++L + + DF LL W IW +R+
Sbjct: 1263 AWWLSDSSLIRNQLMSND-----FEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARN 1317
Query: 126 CFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKC 185
VF K + S + D+++ + P R ++ W PP +VKC
Sbjct: 1318 NVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAEN-KIEWRNPPATYVKC 1376
Query: 186 NTDGSVRGTSNLAACGGVCRDSYGRWL-FGFCRNLGTSNVLWAELWGIFSVIQLAWDRGV 244
N D A G + R+ YG + +G + TSN L AE + + +Q W RG
Sbjct: 1377 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1436
Query: 245 PRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELA 304
++ +E D + LIN G + I W ++ Q R+ N +A LA
Sbjct: 1437 TQVFMEGDCQTLINLIN-GISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLA 1495
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 98.6 bits (244), Expect = 4e-21
Identities = 86/335 (25%), Positives = 146/335 (42%), Gaps = 26/335 (7%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
IW+ K+ +F+WR L+ + + + D C C ETI H++ C+ +
Sbjct: 1388 IWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQ 1447
Query: 70 PLWQQL-VPGH---LFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRS 125
+W+ G F + ++ L G+ +L PI G++P + ++W +W SR+
Sbjct: 1448 VVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNL--PILNGLMPFW--IMWRLWKSRN 1503
Query: 126 CFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVG---------WS 176
++FQ + KV ++ ++V M+ + A+ S++T Q WS
Sbjct: 1504 EYLFQQLDRFPWKVAQKAEQEATEWV--ETMVNDTAI----SHNTAQSNDRPLSRSKQWS 1557
Query: 177 PPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTS-NVLWAELWGIFSV 235
PP ++KCN D + + G + RD GR L C L S + L AE G
Sbjct: 1558 SPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHA 1617
Query: 236 IQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACRE 295
+Q+ W RG + E D+ LIN+ D H ++ IR W + + RE
Sbjct: 1618 LQMVWIRGYCYVWFEGDNLELTNLINKTED-HHLLETLLYDIRFWMTKLPFSSIGYVNRE 1676
Query: 296 ANSVADELANMAHDLDFGIHILDYPPPRVSNLLLF 330
N AD+L A+ + ++ + PPR L L+
Sbjct: 1677 RNLAADKLTKYANSMS-SLYETFHVPPRWLQLYLY 1710
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 98.2 bits (243), Expect = 6e-21
Identities = 78/300 (26%), Positives = 125/300 (41%), Gaps = 15/300 (5%)
Query: 13 WDGPF--KVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRP 70
W+ P K+ +FLWR L+ + R GM +D CP C+ E+E+I H L C
Sbjct: 163 WNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATM 222
Query: 71 LWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLL-----WNIWTSRS 125
W+ + +++D + S++L + + DF LL W IW +R+
Sbjct: 223 AWRLSDSSLIRNQLMSND-----FEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARN 277
Query: 126 CFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKC 185
VF K + S + D+++ + P R ++ W PP +VKC
Sbjct: 278 NVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAEN-KIEWRNPPATYVKC 336
Query: 186 NTDGSVRGTSNLAACGGVCRDSYGRWL-FGFCRNLGTSNVLWAELWGIFSVIQLAWDRGV 244
N D A G + R+ YG + +G + TSN L AE + + +Q W RG
Sbjct: 337 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 396
Query: 245 PRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELA 304
++ +E D + LIN G + I W ++ Q R+ N +A LA
Sbjct: 397 TQVFMEGDCQTLINLIN-GISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLA 455
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 97.1 bits (240), Expect = 1e-20
Identities = 77/300 (25%), Positives = 125/300 (41%), Gaps = 15/300 (5%)
Query: 13 WDGPF--KVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRP 70
W+ P K+ +FLWR L+ + R GM +D CP C+ E+E+I H L C
Sbjct: 1429 WNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATM 1488
Query: 71 LWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLL-----WNIWTSRS 125
W+ + +++D + S++L + + DF LL W IW +R+
Sbjct: 1489 AWRLSDSSLIRNQLMSND-----FEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARN 1543
Query: 126 CFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKC 185
VF K + S + D+++ + P R ++ W PP +VKC
Sbjct: 1544 NVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAEN-KIEWRNPPATYVKC 1602
Query: 186 NTDGSVRGTSNLAACGGVCRDSYGRWL-FGFCRNLGTSNVLWAELWGIFSVIQLAWDRGV 244
N D A G + R+ YG + +G + TSN L AE + + +Q W RG
Sbjct: 1603 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1662
Query: 245 PRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELA 304
++ +E D + LIN G + I W ++ Q ++ N +A LA
Sbjct: 1663 TQVFMEGDCQTLINLIN-GISFHSSLANHLEDISFWANKFASIQFGFIRKKGNKLAHVLA 1721
>At4g15580 splicing factor like protein
Length = 559
Score = 87.0 bits (214), Expect = 1e-17
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 173 VGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGI 232
+ W+ PP WVK +TDG+ RG AA GGV RD G W+ GF L
Sbjct: 26 IAWTKPPEGWVKVSTDGASRGNPGPAAAGGVIRDEDGLWVGGFALQL------------- 72
Query: 233 FSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHA 292
+ ++L W R+ +E DS + V + G HP ++ +DW + H
Sbjct: 73 -AFVRLRWQSCGGRVELEVDSELVVGFLQSGISEAHPLAFLVRLCHGLLSKDWLVRVSHV 131
Query: 293 CREANSVADELANMAHDLDF 312
REAN +AD LAN A L F
Sbjct: 132 YREANRLADGLANYAFSLQF 151
>At1g26950 hypothetical protein
Length = 158
Score = 87.0 bits (214), Expect = 1e-17
Identities = 46/133 (34%), Positives = 65/133 (48%)
Query: 202 GVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLIN 261
G RD YG W F NLG AELWG++ + +AW++G+ RL +E DS + +
Sbjct: 17 GALRDEYGDWRGSFALNLGRCTAPLAELWGVYYGLVIAWEKGITRLELEVDSKLVAGFLT 76
Query: 262 EGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAHDLDFGIHILDYPP 321
G + H ++ + +DW + H REAN ADELAN A L G D
Sbjct: 77 TGIEDSHLLSFLVRLCYGFSSKDWIVRVSHVYREANRFADELANYAFSLLLGFLSFDSGL 136
Query: 322 PRVSNLLLFDVMG 334
P V +++ D G
Sbjct: 137 PFVDSIMREDAAG 149
>At4g29090 putative protein
Length = 575
Score = 85.5 bits (210), Expect = 4e-17
Identities = 82/324 (25%), Positives = 139/324 (42%), Gaps = 26/324 (8%)
Query: 7 WHHIWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCA 66
+ IWK K+ +FLW+ L+N + V ++ +S C C ET+ HLL C
Sbjct: 254 YQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCT 313
Query: 67 CVRPLWQ-QLVPGHLFQAFIASDLCP--WLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTS 123
R W +P L + S W+ + +VP LLW +W +
Sbjct: 314 FARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVP---WLLWRLWKN 370
Query: 124 RSCFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVG-WSPPPPAW 182
R+ VF+G F+ +VL R + D R + + + + G W PPP W
Sbjct: 371 RNELVFRGREFNAQEVLR---RAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQW 427
Query: 183 VKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNL-GTSNVLWAEL----WGIFSVIQ 237
VKCNTD + + G V R+ G + R L +VL AEL W + S+ +
Sbjct: 428 VKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSR 487
Query: 238 LAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREAN 297
++ ++ ESDS V ++++N ++ I +++ + + + V RE N
Sbjct: 488 FQYN----YVIFESDSQVLIEILN-NDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGN 542
Query: 298 SVADELANMAHDLDFGIHILDYPP 321
++A+ +A + + L+Y P
Sbjct: 543 TLAERVARES------LSFLNYDP 560
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 83.2 bits (204), Expect = 2e-16
Identities = 64/244 (26%), Positives = 103/244 (41%), Gaps = 9/244 (3%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
+W K+ FLWR+L+ + V + R GM++D C +C +E E+ H+L C+ R
Sbjct: 822 VWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMAR 881
Query: 70 PLWQQL---VPGHLFQ-AFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRS 125
+W P FQ A I +++ L +L+ +L P V + +LW +W +R+
Sbjct: 882 QVWALSGVPTPEFGFQNASIFANI--QFLFELKKMILVP--DLVKRSWPWVLWRLWKNRN 937
Query: 126 CFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKC 185
F G+ F + L++ ++ ++ W PPP WVKC
Sbjct: 938 KLFFDGITFCPLNSIVKIQEDTLEWFQAQSQIRVSESEEGQRVIPFTHSWEPPPEGWVKC 997
Query: 186 NTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNL-GTSNVLWAELWGIFSVIQLAWDRGV 244
N + G + V RD +G + R G SN A L IF I V
Sbjct: 998 NIGSAWSGKKKVCGGAWVLRDEHGSVILHSRRAFNGCSNKKEASLRCIFWAIDSMRSHRV 1057
Query: 245 PRLV 248
R++
Sbjct: 1058 SRVL 1061
>At3g29820 hypothetical protein
Length = 332
Score = 78.2 bits (191), Expect = 6e-15
Identities = 56/183 (30%), Positives = 75/183 (40%), Gaps = 39/183 (21%)
Query: 157 MQNPALPRRASYHTVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFC 216
+ N R S +GWS P W+K NT+G+ RG LA GVC
Sbjct: 189 LANMGNERMISREERMIGWSAPQVGWIKVNTNGASRGNLGLATSAGVC------------ 236
Query: 217 RNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQ 276
V+ ELWG++ + LAW+R ++ +E DS++ V + G HP
Sbjct: 237 -----EIVMELELWGVYYGLYLAWERMATQVELEIDSNMVVGFLTTGICDYHPL------ 285
Query: 277 IRQWKDRDWDFQCVHACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGS 336
WK AN +AD LAN A L G H P V+ L L D G +
Sbjct: 286 --SWK--------------ANCLADGLANYAFTLPLGFHSFLSVPEAVAPLWLEDNHGST 329
Query: 337 LPR 339
PR
Sbjct: 330 RPR 332
>At2g34320 putative non-LTR retroelement reverse transcriptase
Length = 292
Score = 78.2 bits (191), Expect = 6e-15
Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 22/270 (8%)
Query: 45 DSLCPLCNEESETIIHLLRDCACVRPLWQ----QLVPGHLFQAFIASDLCPWLLG-QLRS 99
++ C C + ET+ HLL C R +W P + + ++L W+L ++
Sbjct: 9 EASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLY-WVLNLEVEI 67
Query: 100 SLLAPIGGGVVPDFGLLLWNIWTSRSCFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQN 159
L IG +VP LLW +W SR+ +F+G +D +VL + ++ R +
Sbjct: 68 PKLGKIGN-LVP---WLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGK 123
Query: 160 PALPRRASYHTVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNL 219
+ P+ +VQ W PP WVKCNTD + + + G + R+ G L+ R L
Sbjct: 124 ASGPQVERNLSVQ--WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARAL 181
Query: 220 -GTSNVLWAEL----WGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMI 274
T NVL AEL W + ++ + + R++ ESD+ V L+N D +
Sbjct: 182 PRTKNVLEAELEALRWAVLTMSRFNY----KRIIFESDAQALVNLLN-SDDFWPTLQPAL 236
Query: 275 SQIRQWKDRDWDFQCVHACREANSVADELA 304
I+Q + + R N VAD +A
Sbjct: 237 EDIQQLLHHFEEVKFEFTPRGGNKVADRIA 266
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.141 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,922,210
Number of Sequences: 26719
Number of extensions: 375532
Number of successful extensions: 1223
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 121
length of query: 342
length of database: 11,318,596
effective HSP length: 100
effective length of query: 242
effective length of database: 8,646,696
effective search space: 2092500432
effective search space used: 2092500432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0045.13