BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0045.10
         (257 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g19180 unknown protein                                              86  2e-17
At1g78890 unknown protein                                              77  1e-14
At1g16840 unknown protein                                              75  5e-14
At1g25250 Indeterminate 1 like Zn finger containing protein            31  0.75
At4g38240 glycosyltransferase like protein                             29  2.8
At4g26750 unknown protein                                              28  3.7
At5g28030 cysteine synthase - like                                     28  4.8
At5g02850 unknown protein                                              28  4.8
At5g57460 unknown protein                                              28  6.3
At2g18510 putative spliceosome associated protein                      27  8.2

>At2g19180 unknown protein
          Length = 179

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 7/142 (4%)

Query: 13  YRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHEVT---LKMFDDLIQRILVKKATPDW 69
           +  P  ++    VC   R S   +    EID+++E     LK  ++ ++RI+V  +TPDW
Sbjct: 20  FNEPAITTPPNVVCFSRRFSSIPQVIELEIDSKNEAEAAILKKLNEFVRRIIVHNSTPDW 79

Query: 70  LPFLPGYSFWVPPRP-SPSSVVHLAHRFNSSDQPQDALNLESHHGWPDPNYFL---QGNA 125
           LPF PG SFWVPP   + + + +L  +  +    +++L+L S +GWP  ++F+    G++
Sbjct: 80  LPFAPGSSFWVPPHQITATKIANLVDKVTNPLTEEESLSLSSPYGWPCSSFFIPPPDGSS 139

Query: 126 PAHSGESGVELNLPEEGTVKVK 147
                E+ VEL +P    ++VK
Sbjct: 140 STQEEEASVELKIPGNEMLEVK 161


>At1g78890 unknown protein
          Length = 155

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 36/113 (31%), Positives = 64/113 (55%), Gaps = 4/113 (3%)

Query: 18  PSSNSMAVCHRHRSSRATK---ATLTEIDAEHEVTLKMFDDLIQRILVKKATPDWLPFLP 74
           PSS ++ +  +  + R+       + EID   +  +   +D + RI+V+++ PDWLPF+P
Sbjct: 24  PSSQTIFIRSQSSNRRSNSNHLGVIYEIDIAADPLVNKLEDAVHRIMVRRSAPDWLPFVP 83

Query: 75  GYSFWVPPRPSPS-SVVHLAHRFNSSDQPQDALNLESHHGWPDPNYFLQGNAP 126
           G SFWVPP  S S  +  L  +  +    ++++++ S  GWP  +YF++G  P
Sbjct: 84  GASFWVPPPRSQSHGIAKLVEKLANPISDEESISISSVRGWPCSDYFIKGVKP 136


>At1g16840 unknown protein
          Length = 161

 Score = 74.7 bits (182), Expect = 5e-14
 Identities = 43/135 (31%), Positives = 71/135 (51%), Gaps = 14/135 (10%)

Query: 6   FSKVKPLYRNPFPSSNSMAVCHRHRSSRATKAT-----LTEIDAE------HEVTLKMFD 54
           FS+   L +  F +++S  +   H  S  ++++     L EID         +  ++  +
Sbjct: 5   FSRSLSLSKGRFAAASSSLLPSSHLVSFRSQSSDRRGDLYEIDTSAASQSPSDPLIQKLE 64

Query: 55  DLIQRILVKKATPDWLPFLPGYSFWVPPRPSPS---SVVHLAHRFNSSDQPQDALNLESH 111
           D + RI V++A PDWLPF+PG S+WVPP  S S    +  L  +  +    +++L+  S 
Sbjct: 65  DAVHRIFVRRAQPDWLPFVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTNSS 124

Query: 112 HGWPDPNYFLQGNAP 126
           HGWP  +YFL+G  P
Sbjct: 125 HGWPSSDYFLKGVQP 139


>At1g25250 Indeterminate 1 like Zn finger containing protein
          Length = 385

 Score = 30.8 bits (68), Expect = 0.75
 Identities = 16/45 (35%), Positives = 23/45 (50%)

Query: 65  ATPDWLPFLPGYSFWVPPRPSPSSVVHLAHRFNSSDQPQDALNLE 109
           +T  + P L G     PPRPS       A+ FN+S  P ++L L+
Sbjct: 217 STASFGPLLHGLPLLRPPRPSNQHSPAFAYPFNASSAPFESLELQ 261


>At4g38240 glycosyltransferase like protein
          Length = 444

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 160 GKRIVNYQLCRSMNYEEHKTPKGIFMVQ----PKLMEKSKNTKGKNRGGDREGQFVQ 212
           G++ +  ++CR+ N+ EH +  G F  Q     KL + + + K K+ G   EG + +
Sbjct: 298 GRQFIRPEVCRTYNFGEHGSSLGQFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNYTK 354


>At4g26750 unknown protein
          Length = 421

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 84  PSPSSVVHLAH--RFNSSDQPQDALNLESHHGWPDPNYFLQGNAPAHSGES 132
           PSP+S+ +      F+ S  P  + +  SH+  P+P Y    +APA S  S
Sbjct: 284 PSPNSLPNFQSYPSFSESSLPSTSPHYPSHYQNPEPYYSSPHSAPAPSSTS 334


>At5g28030 cysteine synthase - like
          Length = 323

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 25/90 (27%), Positives = 41/90 (44%), Gaps = 8/90 (8%)

Query: 127 AHSGESGVELNLPEEGTVKVKRVLLWLSDILSVGKRIVNYQLCRSMNYEEHKTPKGIFMV 186
           A  G +G+   L   G  +  +V+L +   +S+ +RI+     R++  E H T   I + 
Sbjct: 75  ATGGNTGI--GLASIGASRGYKVILLMPSTMSLERRII----LRALGAEVHLTDISIGIK 128

Query: 187 QPKLMEKSKNTKGKNRGGDREGQFVQMEIP 216
               +EK+K    K  GG    QF+  E P
Sbjct: 129 GQ--LEKAKEILSKTPGGYIPHQFINPENP 156


>At5g02850 unknown protein
          Length = 426

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 21/55 (38%), Positives = 27/55 (48%), Gaps = 4/55 (7%)

Query: 48  VTLKMFDDLIQRILVKKATPDWLP-FLPGYSFWVPP---RPSPSSVVHLAHRFNS 98
           +T K+FD    R +   A    LP FL  +S   PP    PSPSS   +  +FNS
Sbjct: 96  LTSKLFDVSPNRAIWLSAFRGSLPSFLSSHSLPPPPPLENPSPSSTKEILSQFNS 150


>At5g57460 unknown protein
          Length = 646

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 5/72 (6%)

Query: 120 FLQGNAPAHSGESG-VELNLPEEGTVKVKRVLLWLSDILSVGKRIVNYQLCRSMNYEEHK 178
           +L+   P  SGE    E +   EGT  VKR  +  S I S+G  + + +   S    E  
Sbjct: 437 YLKTMPPKGSGEEKETEFSFRVEGTTAVKRFAMQSSRISSLGNGLFHVRTAPS----EEP 492

Query: 179 TPKGIFMVQPKL 190
            P   + +QPKL
Sbjct: 493 IPILKYSLQPKL 504


>At2g18510 putative spliceosome associated protein
          Length = 363

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 80  VPPRPSPSSVVHLAHRFNSS--DQPQDALNLESHHGWPDPNYFLQGNAP 126
           +PP P P  + H    F       P  A+ +  H GWP  +   QG  P
Sbjct: 294 MPPPPPPQFLNH-QQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGPP 341


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,183,456
Number of Sequences: 26719
Number of extensions: 272837
Number of successful extensions: 625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 11
length of query: 257
length of database: 11,318,596
effective HSP length: 97
effective length of query: 160
effective length of database: 8,726,853
effective search space: 1396296480
effective search space used: 1396296480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)