BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0044a.5
         (578 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g29782 hypothetical protein                                        280  1e-75
At2g13930 putative retroelement pol polyprotein                       192  4e-49
At5g35820 copia-like retrotransposable element                        191  7e-49
At3g45520 copia-like polyprotein                                      175  7e-44
At2g21460 putative retroelement pol polyprotein                       173  3e-43
At2g07550 putative retroelement pol polyprotein                       173  3e-43
At1g37110                                                             169  3e-42
At4g21360 putative transposable element                               167  1e-41
At1g48710 hypothetical protein                                        164  1e-40
At1g58140 hypothetical protein                                        164  2e-40
At3g61330 copia-type polyprotein                                      163  2e-40
At3g32340 hypothetical protein                                        161  8e-40
At3g59720 copia-type reverse transcriptase-like protein               159  3e-39
At4g10460 putative retrotransposon                                    155  4e-38
At3g60170 putative protein                                            150  2e-36
At1g47360 polyprotein, putative                                       142  4e-34
At2g21310 putative retroelement pol polyprotein                       141  1e-33
At4g03810 putative retrotransposon protein                            137  2e-32
At2g15650 putative retroelement pol polyprotein                       137  2e-32
At1g32590 hypothetical protein, 5' partial                            137  2e-32

>At3g29782 hypothetical protein
          Length = 1130

 Score =  280 bits (717), Expect = 1e-75
 Identities = 174/581 (29%), Positives = 282/581 (47%), Gaps = 96/581 (16%)

Query: 11  FDG-TNFTRWQDKMIFLLTALKI--YYVLDPDLTPIAEPKDDDSDELKTERKKRREDELL 67
           FDG + F  WQ+KM + L ++ +  Y   DP + P           + T      + +  
Sbjct: 71  FDGKSGFKTWQEKMRYYLVSINMERYLPEDPPIVPQGTTYVYTVGGMDTWA----QGDYC 126

Query: 68  CRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLDTKPI 127
           C+G I+N L + L+DLY+  +S+  +W TLE K+K +E  +++F  +K+ +FKM+D+KPI
Sbjct: 127 CKGLILNRLLNDLFDLYSKAKSSKTLWLTLENKYKTDESRMQRFSTAKFLNFKMVDSKPI 186

Query: 128 LQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEKIQKH 187
           ++QV  LQ +  +I+   + I   F+   +I KLPP W+ ++  L    +  + + + + 
Sbjct: 187 MEQVEALQRICQEIELEGMSICNVFKTNCLIEKLPPGWSDFKNYLNFKRKAMTFDDLIRR 246

Query: 188 LRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKGPKGG 247
           L IE  ++       +     N    K K K  GK   +  K                  
Sbjct: 247 LMIEGNNRGAHAGAQNQGHDVNVAEHKAKLKGKGKGFSIPQKNL---------------- 290

Query: 248 CYVCGKPDHFARDCRQNKTKKEVNAVQVDDEIIATVSEVMAVKGKVPGWWYDTCASVHVS 307
                K  H A  C+      +  A   +++++A V+E   V      W+YDT A+ H+ 
Sbjct: 291 -----KIGHKADVCKSKAKDVKSQANLTEEDMVAVVTECNMVDDNQVKWYYDTGATTHIC 345

Query: 308 YDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRDLV 367
            D+  F TY  +  ++++ M N   SK+ G G V L  TSG+++TL N            
Sbjct: 346 TDRTMFSTYVNNKSNEQLFMGNTAMSKIEGKGKVVLKLTSGRELTLQN------------ 393

Query: 368 SGDLLGKPGIKSVYESEKLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNS------- 420
                          S+KL+L ++GV++GKG+   G++K+  +      V+++       
Sbjct: 394 ---------------SDKLVLKKHGVYLGKGFVKGGLVKMSVMTVFPKNVASASVVEMNE 438

Query: 421 ---AYMIDSVSLWHSRLAHIGISTMNRLIKSKLISCNIHEFEKCEICVKSKMIKKHFKSV 477
              AY+++S + WH  L H                              +K+ K     V
Sbjct: 439 NPIAYLVESFTTWHEHLGH------------------------------AKLTKTRSPRV 468

Query: 478 ERKFNLLDLVHSDLCEFNGMLTRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKA 537
           +R    L L+H+DLC+   + TRGG +YF+TFIDDC+RY +VYLL  KD+A   FK +  
Sbjct: 469 KRTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTRYCYVYLLHSKDEALVKFKEFTL 528

Query: 538 EVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDIIHECSA 578
           EVENQL +TIK++RSDRGGEY +  F++FC E  IIH+ +A
Sbjct: 529 EVENQLQRTIKIVRSDRGGEY-NEPFNAFCREKGIIHQTTA 568


>At2g13930 putative retroelement pol polyprotein
          Length = 1335

 Score =  192 bits (488), Expect = 4e-49
 Identities = 159/587 (27%), Positives = 269/587 (45%), Gaps = 70/587 (11%)

Query: 30  LKIYYVLDPDLTPIAEPKDDDSDELKTERKKRREDELL-------CRGHIMNTLSDRLYD 82
           L +  + D  L    +P  ++ +E   +RKKR  DE+         +  I   ++D++  
Sbjct: 4   LSVIGLKDVVLGTTPKPLTEEEEEDPEKRKKRDADEVARLERCDKAKNVIFLNVADKVLR 63

Query: 83  LYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLDTKPILQQVHELQVLVNKIK 142
                ++AA+ W+TL+  F       + +    ++ FKM + K I + + +   +V  + 
Sbjct: 64  KIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADLN 123

Query: 143 AVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEKIQKHLRIEEES-KVRDKAE 201
            ++ID+    Q   +++ LP  ++G         E       ++ LR+++     RDK  
Sbjct: 124 HLQIDVTDEVQAILLLSSLPARYDGL-------VETMKYSNSREKLRLDDVMVAARDKER 176

Query: 202 SSGFSKANTVTTKG---KKKYDGKQQHLGPKKEHNKFKNNNGTKGPKGG--CYVCGKPDH 256
               S+ N    +G   + + DGK  + G     NK KN + +K   G   C++CGK  H
Sbjct: 177 E--LSQNNRPVVEGHFARGRPDGKNNNQG-----NKGKNRSRSKSADGKRVCWICGKEGH 229

Query: 257 FARDC----RQNKTK------------KEVNAVQVDDEIIATVSEVMAVKGKVPGWWYDT 300
           F + C     +NK+K            K   A      ++AT   ++        W  DT
Sbjct: 230 FKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDSIANEWVLDT 289

Query: 301 CASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVP 360
             S H++  K  FK + E +    V+M N+  S V G G++++  + G +V L +V ++P
Sbjct: 290 GCSFHMTPRKDWFKDFKELSSGY-VKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMP 348

Query: 361 EMSRDLVSGDLL--------GKPGIKSVYESEKLILT---RNGVFVGKGYSAEGMIKLCP 409
            M+R+L+S   L         + GI  + +    IL    R+ +++  G + EG      
Sbjct: 349 NMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTEEG------ 402

Query: 410 IDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLISCN-IHEFEKCEICVKSK 468
                 +  +SA + D  +LWHSRL H+    M  L+K   +    I E E CE CV  K
Sbjct: 403 ------ESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGK 456

Query: 469 MIKKHFKSVERKFN-LLDLVHSDLCEF-NGMLTRGGNRYFITFIDDCSRYTHVYLLKHKD 526
             +  F   +      L  VHSDL    +   + G ++YFI+F+DD SR   +Y L+ KD
Sbjct: 457 QHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKD 516

Query: 527 DAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDII 573
           +AF  F  +K  VENQ ++ +K LR+D G EY +  F+ FC+E  I+
Sbjct: 517 EAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIV 563


>At5g35820 copia-like retrotransposable element
          Length = 1342

 Score =  191 bits (486), Expect = 7e-49
 Identities = 165/611 (27%), Positives = 284/611 (46%), Gaps = 75/611 (12%)

Query: 1   MNQDLVKLDRFDGT-NFTRWQDKMIFLLTALKIYYVLDPDLTPIAEP----------KDD 49
           M+    ++++FDG  ++  W++K++  +  L +   L  +   + E           +D 
Sbjct: 1   MSSGRAEVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDP 60

Query: 50  DSDELKTERKKRREDELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIK 109
           ++   K E K  +E     R  I+ +L + +       ++AA + K L+  F A+    +
Sbjct: 61  ETATSKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNR 120

Query: 110 KFLISKYFDFKMLDTKPILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYR 169
            +L  + + +KM +   + + V++   L++ ++ VK+ +    Q   ++  LP  ++  +
Sbjct: 121 IYLKQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLK 180

Query: 170 KKLLHNYEDFSLEKIQKHLRIEEESKVRDKAESSGFSKANT----VTTKGKKKYDGKQQH 225
           + L +      LE+I   +R    SK+ +   S    K N+    V  +G+ +  GK   
Sbjct: 181 ETLKYCKTTLHLEEITSAIR----SKILELGASGKLLKNNSDGLFVQDRGRSETRGK--- 233

Query: 226 LGPKKEHNKFKNNNGTKGPKGGCYVCGKPDHFARDC-------RQNKTKKEVNA----VQ 274
            GP    NK K+ + +KG    C++CGK  HF + C       +Q  T +   A     +
Sbjct: 234 -GP----NKNKSRSKSKGAGKTCWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTAR 288

Query: 275 VDDEIIATVSEVMAVKGKVPG--WWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVR 332
           V D     VS  +    +V    W  DT  S H++  K     + E T   +V+M N+  
Sbjct: 289 VTDAAALVVSRALLGFAEVTPDTWILDTGCSFHMTCRKDWIIDFKE-TASGKVRMGNDTY 347

Query: 333 SKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLL--------GKPGIKSVYESE 384
           S+V G G V +    G  + L +V ++PEMS++L+S   L         K GI ++++++
Sbjct: 348 SEVKGIGDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKND 407

Query: 385 KLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNR 444
             +LT  G      Y  +G   L    N+I+K        D  SLWHSRL HIG   +  
Sbjct: 408 LTVLT--GKKESTLYFLQGTT-LAGEANVIDKEK------DETSLWHSRLGHIGAKGLQV 458

Query: 445 LIKSKLISCNIH-EFEKCEICVKSKMIKKHFKSVERKFNLLDLVHSDLC-EFNGMLTRGG 502
           L+    +  NI   F   +   K K               LD VHSDL    N   + G 
Sbjct: 459 LVSKGHLDKNIMISFGAAKHVTKDK---------------LDYVHSDLWGSTNVPFSIGK 503

Query: 503 NRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTK 562
            +YFITFIDD +R T +Y ++ KD+AF+ F  +K ++ENQ +K +K+L +D G E+ + +
Sbjct: 504 CQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQE 563

Query: 563 FDSFCEEHDII 573
           FDSFC +  +I
Sbjct: 564 FDSFCRKEGVI 574


>At3g45520 copia-like polyprotein
          Length = 1363

 Score =  175 bits (443), Expect = 7e-44
 Identities = 157/598 (26%), Positives = 275/598 (45%), Gaps = 47/598 (7%)

Query: 6   VKLDRFDGT-NFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDD-SDELKTERKKR-- 61
           +++++FDG  ++T W++K++  +  L +  VL    TP+ + +D + SDE + E +++  
Sbjct: 6   IEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEEREKME 65

Query: 62  --REDELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDF 119
              E +   R  I+ ++SDR+        SAA + + L+  + ++    + +L  K + F
Sbjct: 66  AFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSF 125

Query: 120 KMLDTKPILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYED- 178
           KM +   I   + E   +V  ++ + + +    Q   ++  LP  ++  +  L ++    
Sbjct: 126 KMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKT 185

Query: 179 -FSLEKIQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHNKFKN 237
             SL+++   +   E      K    G ++   V  K + +        G  ++ +K K 
Sbjct: 186 VLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENR--------GRSEQKDKGKG 237

Query: 238 NNGTKGPKGGCYVCGKPDHFARDCRQNKTKKEV---------------NAVQVDDEIIAT 282
                  K GC++CG+  H    C  NK K +                N V+     + +
Sbjct: 238 KRSKSKSKRGCWICGEDGHLKSTC-PNKNKPQFKNQGSNKGESSGGKGNLVEGSVNFVES 296

Query: 283 ----VSEVMAVKG--KVPGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVV 336
               VSE ++         W  DT    H+++ +   + + E      V+M N+  S+V 
Sbjct: 297 AGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGS-VRMGNKSISRVK 355

Query: 337 GTGTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKL-ILTRNGVFV 395
           G GTV +   +G  VTL NV ++P+M R+L+S     K G K   E+  L I + N V +
Sbjct: 356 GVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKSGNQVLL 415

Query: 396 -GKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLISCN 454
            G+ Y    ++   P  +    V+ +    D   LWH RL H+    M+ LIK   +   
Sbjct: 416 EGRRYDTLYILHGKPATDESLAVARAN---DDTVLWHRRLCHMSQKNMSLLIKKGFLDKK 472

Query: 455 -IHEFEKCEICVKSKMIKKHFKSVERKFNL-LDLVHSDLCEFNGM-LTRGGNRYFITFID 511
            +   + CE C+  +  K  F   +      L+ VHSDL     + ++ G  +YFI+FID
Sbjct: 473 KVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFID 532

Query: 512 DCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEE 569
           D +R   VY LK KD+AF  F S+ + VENQ  + +K LR+D G E+ +  FD FCEE
Sbjct: 533 DYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEE 590


>At2g21460 putative retroelement pol polyprotein
          Length = 1333

 Score =  173 bits (438), Expect = 3e-43
 Identities = 152/588 (25%), Positives = 272/588 (45%), Gaps = 38/588 (6%)

Query: 1   MNQDLVKLDRFDGT-NFTRWQDKMIFLLTALKIYYVL---DPDLTPIAEPK--DDDSDEL 54
           M+   +++++FDG  ++T W++K++  L  L +   L   D  +  +AE +  +++  E 
Sbjct: 1   MSAARIEVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEE 60

Query: 55  KTERKKRREDELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLIS 114
              R+   E     R  I+ +++DR+       QSAA +   L+  + ++    + +   
Sbjct: 61  VLRRELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQ 120

Query: 115 KYFDFKMLDTKPILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLH 174
           K + FKM +   I   + E   ++  ++   + +    Q   ++  LP  ++  R  L +
Sbjct: 121 KLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKY 180

Query: 175 NYE--DFSLEKIQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEH 232
                  SL+++   +  +E     +K    G  +A  +  K K +  G+ +  G    +
Sbjct: 181 GLGRVTLSLDEVVAAIYSKELELGSNKKSIKG--QAEGLFVKEKTETRGRTEQRG---NN 235

Query: 233 NKFKNNNGTKGPKGGCYVCGKPDHFARDCRQNKTKKEVNAVQVDDEIIATVSEVMAVKGK 292
           N  K +      K GC++CG+  +       +    E N + V + + +T   +      
Sbjct: 236 NNNKKSRSKSRSKKGCWICGESSN------GSSNYSEANGLYVSEALSSTDIHLE----- 284

Query: 293 VPGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVT 352
              W  DT  S H++Y +  F+  +E      V+M N+  SKV G GT+ +   +G  V 
Sbjct: 285 -DEWVMDTGCSYHMTYKREWFEDLNEDAGGS-VRMGNKTVSKVRGIGTIRVKNEAGMVVR 342

Query: 353 LVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKL-ILTRNGVF--VGKGYSAEGMIKLCP 409
           L NV ++PEM R+L+S     K G     E+  L I+  + V   V + Y+   +++  P
Sbjct: 343 LTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLY-LLQWRP 401

Query: 410 I-DNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLISCN-IHEFEKCEICVKS 467
           + +  ++ V       D   LWH RL H+    M+ L+K  L+    + + E CE C+  
Sbjct: 402 VTEESLSVVKRQ----DDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYG 457

Query: 468 KMIKKHFKSVERKFN-LLDLVHSDLCEFNGM-LTRGGNRYFITFIDDCSRYTHVYLLKHK 525
           K  +  F   +      L+ VHSDL     +  + G  +YFI+FIDD +R   +Y LK K
Sbjct: 458 KAKRIGFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTK 517

Query: 526 DDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDII 573
           D+AF+ F  +   VENQ +K IK LR+D G E+ +  FD FC +  I+
Sbjct: 518 DEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGIL 565


>At2g07550 putative retroelement pol polyprotein
          Length = 1356

 Score =  173 bits (438), Expect = 3e-43
 Identities = 148/597 (24%), Positives = 266/597 (43%), Gaps = 44/597 (7%)

Query: 1   MNQDLVKLDRFDGT-NFTRWQDKMIFLLTALKIYYVLDP-----DLTPIAEPKDDDSDEL 54
           M+   +++++FDG  ++T W++K++  +  L +   L       +   + +  D+D +E 
Sbjct: 1   MSTARIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEK 60

Query: 55  KTERKKRREDELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLIS 114
             + +   E +   R  I+ +++DR+        +AA +   L+  + ++    + +   
Sbjct: 61  LEKFEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQ 120

Query: 115 KYFDFKMLDTKPILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLH 174
           K + FKM +   +   + E   ++  ++ + + I    Q   ++  LP +++  +  L +
Sbjct: 121 KLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKY 180

Query: 175 NYED--FSLEKIQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEH 232
           +      +L+++   +  +E        E     K+  V  +G    D K ++ G  ++ 
Sbjct: 181 SSGKSILTLDEVAAAIYSKE-------LELGSVKKSIKVQAEGLYVKD-KNENKGKGEQK 232

Query: 233 NKFKNNNGTKGPKGGCYVCGKPDHFARDC-RQNKTKKEVNAVQVDDEIIATVSEVMAVKG 291
            K K   G    K GC+ CG+  HF   C  QNK + + + V V  E       +    G
Sbjct: 233 GKGKGKKGKSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQV-VKGESSGGKGNLAEAAG 291

Query: 292 KVPG-------------WWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGT 338
                            W  DT  S H++Y +  F  ++E      V+M N+  S+V G 
Sbjct: 292 YYVSEALSSTEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGS-VRMGNKTVSRVRGV 350

Query: 339 GTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNG----VF 394
           GT+ +  + G  + L NV ++P+M R+L+S     K G K  +ESE  IL        + 
Sbjct: 351 GTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYK--FESEDGILRIKAGNQVLL 408

Query: 395 VGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLI-KSKLISC 453
            G+ Y    ++   P+ +    V   A   D   LWH RL H+    M  L+ K  L   
Sbjct: 409 TGRRYDTLYLLNWKPVASESLAVVKRA---DDTVLWHQRLCHMSQKNMEILVRKGFLDKK 465

Query: 454 NIHEFEKCEICVKSKMIKKHFKSVERKFN-LLDLVHSDLCEFNGM-LTRGGNRYFITFID 511
            +   + CE C+  K  +K F          L+ +HSDL     + L+ G  +YF++ ID
Sbjct: 466 KVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIID 525

Query: 512 DCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCE 568
           D +R   VY +K KD+AF  F  +   VENQ ++ +K LR+D G E+ +  FD FCE
Sbjct: 526 DFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCE 582


>At1g37110 
          Length = 1356

 Score =  169 bits (429), Expect = 3e-42
 Identities = 140/512 (27%), Positives = 241/512 (46%), Gaps = 23/512 (4%)

Query: 72  IMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLDTKPILQQV 131
           I+N +SD +        + A +W TL  K+       + +   K + FKM+ T  I Q V
Sbjct: 86  IINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQLKLYSFKMVSTMTIDQNV 145

Query: 132 HELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEKIQKHLRIE 191
            E   +V ++ +++I +    Q   I+  LP S    +  L +  +  +++ +    +  
Sbjct: 146 DEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNKTLTVQDVTSSAKSL 205

Query: 192 EESKVRDKAESSGFSKANTV---TTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKGPKGGC 248
           E    R+ AE+    K       TT+  +      Q  G  K   + ++N+ TK P   C
Sbjct: 206 E----RELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGK--GRSRSNSKTKVP---C 256

Query: 249 YVCGKPDHFARDCRQNKTKKEVNAVQVDDEIIA---TVSEVMAVKGKVPG--WWYDTCAS 303
           + C K  H  +DC   K K E    Q +  +I      SE ++V  ++    W  D+  +
Sbjct: 257 WYCKKEGHVKKDCYSRKKKMESEG-QGEAGVITEKLVFSEALSVNEQMVKDLWILDSGCT 315

Query: 304 VHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVPEMS 363
            H++  +  F ++ E   +  + + ++   +  G GT+ ++   G    L NV +VP + 
Sbjct: 316 SHMTSRRDWFISFQEK-GNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLR 374

Query: 364 RDLVSGDLLGKPGIKSVYESEKLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNSAYM 423
           R+L+S   L K G +      K+   +N     +G  + G+  L     +++++ N+   
Sbjct: 375 RNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDG-STVMSELCNAETD 433

Query: 424 IDSVSLWHSRLAHIGISTMNRLIKSKLISCN-IHEFEKCEICVKSKMIKKHFK-SVERKF 481
               +LWHSRL H+ ++ +  L    LI    I+E E CE CV  K  K  F        
Sbjct: 434 KVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSE 493

Query: 482 NLLDLVHSDLCEF-NGMLTRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVE 540
           + L  VH+DL    N   +  G +YF++ IDD +R   +Y LK KD+ F+ F  +K+ VE
Sbjct: 494 DALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVE 553

Query: 541 NQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDI 572
           NQ+NK +K LR+D G E+ +++FDS+C+EH I
Sbjct: 554 NQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGI 585


>At4g21360 putative transposable element
          Length = 1308

 Score =  167 bits (424), Expect = 1e-41
 Identities = 142/553 (25%), Positives = 252/553 (44%), Gaps = 57/553 (10%)

Query: 44  AEPKDDDSDELKTER-----KKRREDELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLE 98
           +E +DD++D  KTE      K  + D+   +  I+N ++D +        +AA++W TL 
Sbjct: 57  SESEDDETDSKKTEEVPDPIKFEQSDQ--AKNFIINHITDTVLLKVQHCVTAAELWATLN 114

Query: 99  FKFKAEEEGIKKFLISKYFDFKMLDTKPILQQVHELQVLVNKIKAVKIDIRGAFQVGAII 158
             F       + +   + + FKM+D   I Q   E   +V ++ +++I +    Q   I+
Sbjct: 115 KLFMETSLPNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILIL 174

Query: 159 AKLPPSWNGYRKKLLHNYEDFSLEKIQKHLR-IEEESKVRDKAESSGFSKANTVTTKGKK 217
             LPPS+   +  L +  +  S++ +    + +E E   + +   +  S A     +G+ 
Sbjct: 175 NSLPPSYIQLKHTLKYGNKTLSVQDVVSSAKSLERELSEQKETIRAPASTALYTAERGRP 234

Query: 218 KYDGKQ-QHLGPKKEHNKFKNNNGTKGPKGGCYVCGKPDHFARDCRQNKTKKEVN----A 272
           +    Q Q  G  + ++K +           C+ C K  H  +DC   K K E      A
Sbjct: 235 QTKNTQGQGKGRGRSNSKSRLT---------CWFCKKEGHVKKDCYAGKRKLENEGQGKA 285

Query: 273 VQVDDEIIATVSEVMAVKGKVPGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVR 332
             + ++++ + +  M  +     W  D+  + H++     F  ++E+ +   + + ++  
Sbjct: 286 GVITEKLVYSEALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFNEN-ETTMILLGDDHT 344

Query: 333 SKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKS--------VYESE 384
            +  G+GTV++N   G    L NV  VP + R+L+S   L K G K          Y+  
Sbjct: 345 VESKGSGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKEN 404

Query: 385 KLILTRN---GVFVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGIST 441
           K  L  N   G++V  G++            ++N+  N     +   LWH RL H+ ++ 
Sbjct: 405 KTALCGNLVNGLYVLDGHT------------VVNENCNVEGSNEKTELWHCRLGHMSLNN 452

Query: 442 MNRLIKSKLISC-NIHEFEKCEICVKSKMIKKHFKSVERKFN-LLDLVHSDLCEFNGMLT 499
           M  L +  L+   +I E   CE CV  K  K  F   +   + +L  +H+DL        
Sbjct: 453 MKILAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLW------- 505

Query: 500 RGGNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYF 559
             G +YF++ IDD SR   +  LK KD+ F  F  +K  VENQ+NK +K+LR+D G E+ 
Sbjct: 506 --GKQYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFC 563

Query: 560 STKFDSFCEEHDI 572
           + KFD FC+++ I
Sbjct: 564 NLKFDEFCKQNGI 576


>At1g48710 hypothetical protein
          Length = 1352

 Score =  164 bits (416), Expect = 1e-40
 Identities = 152/614 (24%), Positives = 276/614 (44%), Gaps = 69/614 (11%)

Query: 14  TNFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDS------DELKTERKKRREDELL 67
           +N+  W  +M  +L A  ++ +++       EP+++ S      D L+  RK  R+ + L
Sbjct: 16  SNYDNWSLRMKAILGAHDVWEIVEKGFI---EPENEGSLSQTQKDGLRDSRK--RDKKAL 70

Query: 68  CRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKF---------------- 111
           C   I   L +  ++   +  SA + W+ L   +K  ++ +KK                 
Sbjct: 71  CL--IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ-VKKVRLQTLRGEFEALQMKE 127

Query: 112 --LISKYFDFKMLDTKPIL---QQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWN 166
             L+S YF   +  T  +    +++ +++++   ++++ +       +  +I +      
Sbjct: 128 GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFE---HIVTVIEETKDLEA 184

Query: 167 GYRKKLLHNYEDFSLEKIQKHLRIEEESKVRDKAESSGFSK----ANTVTTKGKKKYDGK 222
              ++LL + + +  +K +K   IE+   ++   E +G S        V  +G+  Y G 
Sbjct: 185 MTIEQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGY-GN 243

Query: 223 QQHLGPKKEHNKFKNNNGTKGPKGG------------CYVCGKPDHFARDCRQNKTKK-E 269
            +   P +++   +  N ++G   G            CY CGK  H+A +C+    KK E
Sbjct: 244 GRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 270 VNAVQVDDEIIATVSEVMAVKGKVPG-----WWYDTCASVHVSYDKASFKTYSESTDDQE 324
             A  V+++I      +MA   K        W+ D+ AS H+   K+ F    ES     
Sbjct: 304 EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN- 362

Query: 325 VQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRDLVS-GDLLGKPGIKSVYES 383
           V + +E + +V G G + +   +G    + NV ++P M  +++S G LL K     + ++
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422

Query: 384 EKLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMN 443
              I  +    + K   ++  + +  I N I +     Y  +S  LWH R  H+    + 
Sbjct: 423 NLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW-LWHLRFGHLNFGGLE 481

Query: 444 RLIKSKLIS---CNIHEFEKCEICVKSKMIKKHF--KSVERKFNLLDLVHSDLCEFNGML 498
            L + +++    C  H  + CE C+  K  K  F  +S  R    L+L+H+D+C      
Sbjct: 482 LLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPK 541

Query: 499 TRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEY 558
           + G + YF+ FIDD SR T VY LK K + F  FK +KA VE +    IK +RSDRGGE+
Sbjct: 542 SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEF 601

Query: 559 FSTKFDSFCEEHDI 572
            S +F  +CE++ I
Sbjct: 602 TSKEFLKYCEDNGI 615


>At1g58140 hypothetical protein
          Length = 1320

 Score =  164 bits (414), Expect = 2e-40
 Identities = 151/614 (24%), Positives = 276/614 (44%), Gaps = 69/614 (11%)

Query: 14  TNFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDS------DELKTERKKRREDELL 67
           +N+  W  +M  +L A  ++ +++       EP+++ S      D L+  RK  R+ + L
Sbjct: 16  SNYDNWSLRMKAILGAHDVWEIVEKGFI---EPENEGSLSQTQKDGLRDSRK--RDKKAL 70

Query: 68  CRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKF---------------- 111
           C   I   L +  ++   +  SA + W+ L   +K  ++ +KK                 
Sbjct: 71  CL--IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ-VKKVRLQTLRGEFEALQMKE 127

Query: 112 --LISKYFDFKMLDTKPIL---QQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWN 166
             L+S YF   +  T  +    +++ +++++   ++++ +       +  +I +      
Sbjct: 128 GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFE---HIVTVIEETKDLEA 184

Query: 167 GYRKKLLHNYEDFSLEKIQKHLRIEEESKVRDKAESSGFSK----ANTVTTKGKKKYDGK 222
              ++LL + + +  +K +K   +E+   ++   E +G S        V  +G+  Y G 
Sbjct: 185 MTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGY-GN 243

Query: 223 QQHLGPKKEHNKFKNNNGTKGPKGG------------CYVCGKPDHFARDCRQNKTKK-E 269
            +   P +++   +  N ++G   G            CY CGK  H+A +C+    KK E
Sbjct: 244 GRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 270 VNAVQVDDEIIATVSEVMAVKGKVPG-----WWYDTCASVHVSYDKASFKTYSESTDDQE 324
             A  V+++I      +MA   K        W+ D+ AS H+   K+ F    ES     
Sbjct: 304 EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN- 362

Query: 325 VQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRDLVS-GDLLGKPGIKSVYES 383
           V + +E + +V G G + +   +G    + NV ++P M  +++S G LL K     + ++
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422

Query: 384 EKLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMN 443
              I  +    + K   ++  + +  I N I +     Y  +S  LWH R  H+    + 
Sbjct: 423 NLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW-LWHLRFGHLNFGGLE 481

Query: 444 RLIKSKLIS---CNIHEFEKCEICVKSKMIKKHF--KSVERKFNLLDLVHSDLCEFNGML 498
            L + +++    C  H  + CE C+  K  K  F  +S  R    L+L+H+D+C      
Sbjct: 482 LLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPK 541

Query: 499 TRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEY 558
           + G + YF+ FIDD SR T VY LK K + F  FK +KA VE +    IK +RSDRGGE+
Sbjct: 542 SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEF 601

Query: 559 FSTKFDSFCEEHDI 572
            S +F  +CE++ I
Sbjct: 602 TSKEFLKYCEDNGI 615


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  163 bits (413), Expect = 2e-40
 Identities = 150/611 (24%), Positives = 268/611 (43%), Gaps = 63/611 (10%)

Query: 14  TNFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDS------DELKTERKKRREDELL 67
           +N+  W  +M  +L A  ++ +++       EP+++ S      D L+  RK  R+ + L
Sbjct: 16  SNYDNWSLRMKAILGAHDVWEIVEKGFI---EPENEGSLSQTQKDGLRDSRK--RDKKAL 70

Query: 68  CRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKF---------------- 111
           C   I   L +  ++   +  SA + W+ L   +K  ++ +KK                 
Sbjct: 71  CL--IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ-VKKVRLQTLRGEFEALQMKE 127

Query: 112 --LISKYFDFKMLDTKPIL---QQVHELQVLVNKIKAVKIDIRGAFQV--------GAII 158
             L+S YF   +  T  +    +++ +++++   ++++ +       V           I
Sbjct: 128 GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 159 AKLPPSWNGYRKKLLHNYEDFSLEKIQKHLRIEEESKV---RDKAESSGFSKANTVTTKG 215
            +L  S   Y +K     ED + + +   +  EE  +    R   +  G  +      +G
Sbjct: 188 EQLLGSLQAYEEKKKKK-EDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRG 246

Query: 216 KKKYDGKQQHLGPKKEHNKFKNNNGTKGPKGG--CYVCGKPDHFARDCRQNKTKK-EVNA 272
            + ++      G      + K +  ++  K    CY CGK  H+A +C+    KK E  A
Sbjct: 247 WRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKA 306

Query: 273 VQVDDEIIATVSEVMAVKGKVPG-----WWYDTCASVHVSYDKASFKTYSESTDDQEVQM 327
             V+++I      +MA   K        W+ D+ AS H+   K+ F    ES     V +
Sbjct: 307 HYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGN-VAL 365

Query: 328 RNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRDLVS-GDLLGKPGIKSVYESEKL 386
            +E + +V G G + +   +G    + NV ++P M  +++S G LL K     + ++   
Sbjct: 366 GDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLS 425

Query: 387 ILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLI 446
           I  +    + K   ++  + +  I N I +     Y  +S  LWH R  H+    +  L 
Sbjct: 426 IRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW-LWHLRFGHLNFGGLELLS 484

Query: 447 KSKLIS---CNIHEFEKCEICVKSKMIKKHF--KSVERKFNLLDLVHSDLCEFNGMLTRG 501
           + +++    C  H  + CE C+  K  K  F  +S  R    L+L+H+D+C      + G
Sbjct: 485 RKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLG 544

Query: 502 GNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFST 561
            + YF+ FIDD SR T VY LK K + F  FK +KA VE +    IK +RSDRGGE+ S 
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604

Query: 562 KFDSFCEEHDI 572
           +F  +CE++ I
Sbjct: 605 EFLKYCEDNGI 615


>At3g32340 hypothetical protein
          Length = 871

 Score =  161 bits (408), Expect = 8e-40
 Identities = 101/299 (33%), Positives = 153/299 (50%), Gaps = 10/299 (3%)

Query: 287 MAVKGKVPGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMR--NEVRSKVVGTGTVELN 344
           +   G  P W  DT    H+  +       S + ++ +V +R  N  +   +  GT  L+
Sbjct: 143 VTTSGSTP-WVLDTGCGAHICVNVHGLNN-SRTFEEGQVDLRVANGAKVSALAVGTYSLS 200

Query: 345 FTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGVFVGKGYSAEGM 404
             SG  + L N  +VP +++++VS   L   G     +++     R+ +F G      G+
Sbjct: 201 LPSGMVLELKNCYYVPAINKNIVSVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLENGL 260

Query: 405 IKL---CPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLI-SCNIHEFEK 460
             L    P+ NI  K+  S  + +   LWH RL HI    + +L    L+ S +   +E 
Sbjct: 261 YVLNQSMPVYNIRTKIFKSNDL-NPTFLWHCRLGHINEKRIQKLHSDGLLNSFDYESYET 319

Query: 461 CEICVKSKMIKKHFKS-VERKFNLLDLVHSDLCEFNGMLTRGGNRYFITFIDDCSRYTHV 519
           CE C+  KM K  F    ER  +LL L+H+D+C       RG  +YFITF DD SRY++V
Sbjct: 320 CESCLLGKMTKAPFSGHSERAGDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYSYV 379

Query: 520 YLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDIIHECSA 578
           YL+KHK ++F  FK ++ EV+NQL K+IK LRSDRGGEY S  F     E  I+ + ++
Sbjct: 380 YLMKHKSESFEKFKEFQNEVQNQLGKSIKALRSDRGGEYLSQVFSGHLRECGIVSQLTS 438


>At3g59720 copia-type reverse transcriptase-like protein
          Length = 1272

 Score =  159 bits (403), Expect = 3e-39
 Identities = 145/614 (23%), Positives = 276/614 (44%), Gaps = 69/614 (11%)

Query: 14  TNFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDS------DELKTERKKRREDELL 67
           +N+  W  +M  +L A  ++ +++       EP+++ S      D L+  RK  R+ + L
Sbjct: 16  SNYDNWSLRMKAILGAHDVWEIVEKGFI---EPENEGSLSQTQKDGLRDSRK--RDKKAL 70

Query: 68  CRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKF---------------- 111
           C   I   L +  ++   +  SA + W+ L   +K  ++ +KK                 
Sbjct: 71  CL--IYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ-VKKVRLQTLRGEFEALQMKE 127

Query: 112 --LISKYFDFKMLDTKPIL---QQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWN 166
             L+S YF   +  T  +    +++ +++++   ++++ +       +  +I +      
Sbjct: 128 GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFE---HIVTVIEETKDLEA 184

Query: 167 GYRKKLLHNYEDFSLEKIQKHLRIEEESKVRDKAESSGFSK----ANTVTTKGKKKYDGK 222
              ++LL + + +  +K +K   +E+   ++   E +G S        V  +G+  Y G 
Sbjct: 185 MTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGY-GN 243

Query: 223 QQHLGPKKEHNKFKNNNGTKGPKGG------------CYVCGKPDHFARDCR---QNKTK 267
            +   P +++   +  N ++G   G            CY CGK  H+A +C+     K K
Sbjct: 244 GRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFK 303

Query: 268 KEVNAVQV---DDEIIATVSEVMAVKGKVPGWWYDTCASVHVSYDKASFKTYSESTDDQE 324
           ++ N V+    +++++   S     + +   W+ D+ AS H+   K+ F    ES     
Sbjct: 304 EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN- 362

Query: 325 VQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRDLVS-GDLLGKPGIKSVYES 383
           V + +E + +V G G + +   +G    + NV ++P M  +++S G LL K     + ++
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422

Query: 384 EKLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMN 443
              I  +    + K   ++  + +  I N I +     Y  +S  LWH R  H+    + 
Sbjct: 423 NLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW-LWHLRFGHLNFGGLE 481

Query: 444 RLIKSKLIS---CNIHEFEKCEICVKSKMIKKHF--KSVERKFNLLDLVHSDLCEFNGML 498
            L + +++    C  H  + CE C+     K  F  +S  R    L+L+H+D+C      
Sbjct: 482 LLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPK 541

Query: 499 TRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEY 558
           + G + YF+ FIDD SR T VY LK K + F  FK +KA VE +    IK +RSD GGE+
Sbjct: 542 SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEF 601

Query: 559 FSTKFDSFCEEHDI 572
            S +F  +CE++ I
Sbjct: 602 TSKEFLKYCEDNGI 615


>At4g10460 putative retrotransposon
          Length = 1230

 Score =  155 bits (393), Expect = 4e-38
 Identities = 149/605 (24%), Positives = 272/605 (44%), Gaps = 66/605 (10%)

Query: 1   MNQDLVKLDRFDGT-NFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDSDELKTERK 59
           M+   V++++FDG  ++T W++K++  +  L +   L  +   +++P + + +  ++E+ 
Sbjct: 1   MSSARVEMEKFDGHGDYTLWKEKLMAHMDLLGLTVALR-ETQSVSDPLESEEEGKESEKG 59

Query: 60  KRR----EDELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISK 115
            +     E     R  I+ ++SD++       ++A  + + L+  + ++    + +L  K
Sbjct: 60  DKEALMEEKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQK 119

Query: 116 YFDFKMLDTKPILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHN 175
            + +KM +   +   + E   L+  ++   + +    Q   ++  LP  ++  +  L + 
Sbjct: 120 LYSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYG 179

Query: 176 YEDFSLEKIQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHNKF 235
               +L   +    I  +       + S   +A  +  K K +  G  +    K++ NK 
Sbjct: 180 SGRTTLSVDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQ---KEKGNKG 236

Query: 236 KNNNGTKGPKGGCYVCGKPDHFARDC-----RQNKTKKEVNAVQVDDEIIAT-------- 282
           ++ + +KG KG C++CG+  HF   C     +QNK K + +  + +   I          
Sbjct: 237 RSRSRSKGWKG-CWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGY 295

Query: 283 -VSEVMAVKGKVPG--WWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTG 339
            VSE +       G  W  DT  + H+++ K  F+  SE                    G
Sbjct: 296 YVSEALHSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAG-----------------G 338

Query: 340 TVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGVFVGK-- 397
           TV +     K  +   V ++P+M R+L+S   L + G    +ES      +NGV V K  
Sbjct: 339 TVRMG---NKSTSKFRVKYIPDMDRNLLSMGTLEEHGYS--FES------KNGVLVVKEG 387

Query: 398 ------GYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLI 451
                 G   E +  L     + + ++      D+V LWH RL HI    M+ L+K   +
Sbjct: 388 TRTLLIGSRHEKLYLLQGKPEVSHSMTVERRNDDTV-LWHRRLGHISQKNMDILVKKGYL 446

Query: 452 SCN-IHEFEKCEICVKSKMIKKHFK-SVERKFNLLDLVHSDLCEFNGM-LTRGGNRYFIT 508
               + + E CE C+  K  +  F  +     + L+ VHSDL     + L+ G  +YFI+
Sbjct: 447 DGKKVSKLELCEDCIYGKARRLSFVVATHNTEDKLNYVHSDLWGAPSVPLSLGKCQYFIS 506

Query: 509 FIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCE 568
           FID  SR T VY LKHKD+AF  F  +   VENQ  + IK+LR D G E+ + +F+ FC+
Sbjct: 507 FIDVYSRKTWVYFLKHKDEAFGTFAEWSVMVENQTGRKIKILRIDNGLEFCNQQFNDFCK 566

Query: 569 EHDII 573
           E  I+
Sbjct: 567 EKGIV 571


>At3g60170 putative protein
          Length = 1339

 Score =  150 bits (378), Expect = 2e-36
 Identities = 140/590 (23%), Positives = 261/590 (43%), Gaps = 31/590 (5%)

Query: 8   LDRFDGTNFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDSDELKTERKKRREDELL 67
           + RFDG  +  W   M   L + +++ +++  +  I       S+  ++  ++ +  +L 
Sbjct: 12  IPRFDGY-YDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDLK 70

Query: 68  CRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLDTKP- 126
            +  +   +   + +   D  ++  IW++++ K++   +  +  L +   +F++L  K  
Sbjct: 71  VKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEG 130

Query: 127 --ILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKL--LHNYEDFSLE 182
             I   +     +VNK+K     +  +  V  I+  L P +N     +   ++    S++
Sbjct: 131 EKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSID 190

Query: 183 KIQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTK 242
           ++   L + E+       E     +A  VT + +      +      +   + +  +GT 
Sbjct: 191 ELHGSLLVHEQRLNGHVQEE----QALKVTHEERPSQGRGRGVFRGSRGRGRGRGRSGTN 246

Query: 243 GPKGGCYVCGKPDHFARDCRQNKTKKEVNAVQVDDE----IIATVSEVMAVKGKVPGWWY 298
                CY C    HF  +C +   +K  N  ++++E    ++A V +  A + +V  W+ 
Sbjct: 247 RAIVECYKCHNLGHFQYECPE--WEKNANYAELEEEEELLLMAYVEQNQANRDEV--WFL 302

Query: 299 DTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLH 358
           D+  S H++  K  F    E  + + V++ N+ R  VVG G+V++   +G    +  V +
Sbjct: 303 DSGCSNHMTGSKEWFSELEEGFN-RTVKLGNDTRMSVVGKGSVKVK-VNGVTQVIPEVYY 360

Query: 359 VPEMSRDLVSGDLLGKPGIKSVYESE--KLILTRNGVFVGKGYSAEGMIKLCPIDNIINK 416
           VPE+  +L+S   L + G+  +      K+     G  +    S   M  L       N 
Sbjct: 361 VPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNS 420

Query: 417 V--SNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKL-ISCNIHEFEKCEICVKSKMIKKH 473
           +       M     LWH R  H+    +  L   K+ I   I +  K EIC      K+H
Sbjct: 421 LCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATK-EICAICLTGKQH 479

Query: 474 FKSVERKFNL-----LDLVHSDLCEFNGMLTRGGNRYFITFIDDCSRYTHVYLLKHKDDA 528
            +S+ +K +      L LVHSD+C     ++  G RY ++FIDD +R T VY L  K +A
Sbjct: 480 RESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEA 539

Query: 529 FNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDIIHECSA 578
           F  FK +KA VE ++   +  LR+DRGGE+ S +F  FC  H I  + +A
Sbjct: 540 FATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTA 589


>At1g47360 polyprotein, putative
          Length = 1182

 Score =  142 bits (359), Expect = 4e-34
 Identities = 131/511 (25%), Positives = 226/511 (43%), Gaps = 70/511 (13%)

Query: 88  QSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLDTKPILQQVHELQVLVNKIKAVKID 147
           Q+A + W+TL+  F       + +    ++ FKM + K I + + +   +V  +  ++I+
Sbjct: 59  QTAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIE 118

Query: 148 IRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEKIQKHLRIEEESK-VRDKAESSGFS 206
           +    Q   +++ LP  ++G         E       ++ LR+++     RDK      S
Sbjct: 119 VTDEVQAILLLSSLPARYDGL-------VETMKYSNSREKLRLDDVMVGARDKERE--LS 169

Query: 207 KANTVTTKG---KKKYDGKQQHLGPKKEHNKFKNNNGTKGPKGG--CYVCGKPDHFARDC 261
           + N    +G   + + +GK  + G     NK KN + +K   G   C++CGK  HF + C
Sbjct: 170 QNNRPVAEGHYARGRPEGKNNNQG-----NKGKNRSRSKSADGKRVCWICGKEGHFKKQC 224

Query: 262 ----RQNKTKKEVNAV---------QVDDE--IIATVSEVMAVKGK-VPGWWYDTCASVH 305
                +NK+K++ + V         ++ D   +I    E + V G+    W+ DT  S H
Sbjct: 225 YKWLERNKSKQQGSDVGESSLAKSSEIFDPAMVIMATGETLLVTGRDADEWFLDTGCSFH 284

Query: 306 VSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVPEMSRD 365
           ++  +  FK + E +    V+M N+  S V G G++++    G +V L +V +VP M+R+
Sbjct: 285 MTPRRDLFKDFKELSSGF-VKMGNDTYSPVKGIGSIKIRNNDGTQVILTDVRYVPNMARN 343

Query: 366 LVSGDLLGKPGIKSVYESEKLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNSAYMID 425
           L+S   L   G     +   L + +    + KG   E +  L  +     +  +SA + D
Sbjct: 344 LISLGTLEDKGCWFKSQDGVLKIVKGCSTILKGQKRETLYILEGLAE-NGESHSSAELKD 402

Query: 426 SVSLWHSRLAHIGISTMNRLIKSKLISC-NIHEFEKCEICVKSKMIKKHFKSVER-KFNL 483
             SLWHSRL H+    M  L+K   +    I E + CE CV  K  +  F   +      
Sbjct: 403 ETSLWHSRLGHMSQKGMEILVKKDCLQRETIKELKFCEDCVYGKNHRVSFAPAQHVTKEK 462

Query: 484 LDLVHSDLC-EFNGMLTRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQ 542
           L  +HSDL    +   + G  +YFI+F+DD SR                           
Sbjct: 463 LAYIHSDLWGSPHNPASLGNCQYFISFVDDYSR--------------------------- 495

Query: 543 LNKTIKVLRSDRGGEYFSTKFDSFCEEHDII 573
             K +K LR+D G EY +  F+ FC++  I+
Sbjct: 496 --KKVKKLRTDNGLEYCNHYFEKFCKDEGIV 524


>At2g21310 putative retroelement pol polyprotein
          Length = 838

 Score =  141 bits (355), Expect = 1e-33
 Identities = 137/536 (25%), Positives = 245/536 (45%), Gaps = 44/536 (8%)

Query: 7   KLDRFDGT-NFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDSDEL--KTERKKRRE 63
           ++++ DG  ++  W++K++  +  L +   L+ D     E    ++D L  KTE K  +E
Sbjct: 7   EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66

Query: 64  DELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLD 123
                R  ++ +L + +       ++AA + + L+  F A+    + +L  + + +KM D
Sbjct: 67  KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126

Query: 124 TKPILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEK 183
           +  I + V++   L++ ++ VK+ +    Q   ++  LP  ++  +  L +     +L++
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLALDE 186

Query: 184 IQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKG 243
           I   +R    SKV +   S    K ++     + +  G+ +      E NK ++ + ++ 
Sbjct: 187 ITGAIR----SKVLELGASGKMLKNSSDALFVQDR--GRSEKRDKSSERNKSQSRSKSR- 239

Query: 244 PKGGCYVCGKPDHFARDCR--QNKTKKEVNAVQ----------VDDEIIATVSEVMAVKG 291
            K  C+VCGK  HF + C   + K KK  N+ +           D   +A   E  A   
Sbjct: 240 EKKVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNADNQ 299

Query: 292 KVPG-WWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKK 350
           +V   W  DT  S H++  +  F  + ES   + V+M N+  S++ G G++ +       
Sbjct: 300 EVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGR-VKMANQTYSEIKGIGSIRIQNDDNTT 358

Query: 351 VTLVNVLHVPEMSRDLVSGDLL--------GKPGIKSVYESEKLILTRNGVFVGKGYSAE 402
           V L NV +VP MS++L+S   L         K G   V +    +L   G  VG  Y  +
Sbjct: 359 VLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLL--KGKKVGTLYLLQ 416

Query: 403 GMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLISC-NIHEFEKC 461
           G++    +    N V++S    D   +WHSRL H+    ++ LIK   +    I+  E C
Sbjct: 417 GVV----VTGNANAVTSSK---DESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFC 469

Query: 462 EICVKSKMIKKHFKSVER-KFNLLDLVHSDLCEFNGMLTRGGN-RYFITFIDDCSR 515
           E CV  K  +  F S +      L+ +HSDL     +    GN +YFITFIDD +R
Sbjct: 470 EDCVYGKTHRVGFGSAKHVTREKLEYIHSDLWGAPSVPNSLGNCQYFITFIDDLTR 525


>At4g03810 putative retrotransposon protein
          Length = 964

 Score =  137 bits (345), Expect = 2e-32
 Identities = 85/228 (37%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 353 LVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGVFVGKGYSAEGMIKL---CP 409
           L N  +VP ++++++S   L   G     +++     R+ +F G      G+  L    P
Sbjct: 5   LKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQSMP 64

Query: 410 IDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLI-SCNIHEFEKCEICVKSK 468
           I NI  K   S  + +   LWH RL HI    + +L    L+ S +   +E CE C+  K
Sbjct: 65  IYNIRTKKFKSNDL-NPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGK 123

Query: 469 MIKKHFKS-VERKFNLLDLVHSDLCEFNGMLTRGGNRYFITFIDDCSRYTHVYLLKHKDD 527
           M K  F    ER  +LL L+H+D+C       RG  +YFITF DD SRY +VYL+KHK  
Sbjct: 124 MTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSK 183

Query: 528 AFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDIIHE 575
           +F  FK ++ EV+NQ  K+IK LRSDRGGEY S  F     E  I+ +
Sbjct: 184 SFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQ 231


>At2g15650 putative retroelement pol polyprotein
          Length = 1347

 Score =  137 bits (344), Expect = 2e-32
 Identities = 139/601 (23%), Positives = 261/601 (43%), Gaps = 58/601 (9%)

Query: 11  FDGTNFTRWQDKMIFLLTALKIYYVLDPDLT--PIAEPKDDDSDELKTERKKRREDELLC 68
           FDG  +  W  KM  +    K++ V++  +   P+   +  ++   KT R++   ++ + 
Sbjct: 12  FDGEKYDFWSIKMATIFRTRKLWSVVEEGVPVEPVQAEETPETARAKTLREEAVTNDTMA 71

Query: 69  RGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEG--IK-KFLISKYFDFKMLDTK 125
              +   ++D+++       S+ + W  L+ +++   +   +K + L  +Y + KM D  
Sbjct: 72  LQILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYDND 131

Query: 126 PILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEKIQ 185
            I     +L VL  ++            +  I+  LP  ++     +L    D     + 
Sbjct: 132 NIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSI-VSVLEQTRDLDALTMS 190

Query: 186 KHLRI-----------EEESK-----VRDKAESSGFSKANTVTTKGK-KKYDGKQQHLGP 228
           + L I           EE +K     VR K   SGF + NT     + KK+ G  +    
Sbjct: 191 ELLGILKAQEARVTAREESTKEGAFYVRSKGRESGFKQDNTNNRVNQDKKWCGFHKSSKH 250

Query: 229 KKEH--NKFKNNNGTKGPKGG--CYVCGKPDHFARDCR-QNKTKKEVNAVQVD---DEII 280
            +E    K KN++  K  +    CY CGK  H+A +CR +NK +  V   + D   D ++
Sbjct: 251 TEEECREKPKNDDHGKNKRSNIKCYKCGKIGHYANECRSKNKERAHVTLEEEDVNEDHML 310

Query: 281 ATVSEVMAVKGKVPGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGT 340
            + SE  +   +   W  D+  + H++ ++  F   ++S     +++RN       G G 
Sbjct: 311 FSASEEESTTLREDVWLVDSGCTNHMTKEERYFSNINKSIK-VPIRVRNGDIVMTAGKGD 369

Query: 341 VELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILT-RNGVFVGKGY 399
           + +    GK++ + NV  VP + ++L+S   +   G    ++ ++ I+   NG  +    
Sbjct: 370 ITVMTRHGKRI-IKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEIMNIE 428

Query: 400 SAEGMIKLCPIDNIINKVSNSAYM--IDSVSLWHSRLAHIGISTMNRLIKSKLISCNIHE 457
             +   K+      ++ V   A    + +   WH RL H+    + ++   +L++  +  
Sbjct: 429 MTDKSFKIK-----LSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVN-GLPR 482

Query: 458 F----EKCEICVKSKMIKKHF--KSVERKFNLLDLVHSDLCEFNGMLTRGGNRYFITFID 511
           F    E C+ C   K  +K F  +S  +    L++VH+D+C      +  G+RY++ F+D
Sbjct: 483 FKVTKETCKACNLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLD 542

Query: 512 DCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHD 571
           D +    VY LK K + F  FK +KA VE Q N +IK LR            + FCE+  
Sbjct: 543 DYTHMCWVYFLKQKSETFATFKKFKALVEKQSNCSIKTLR----------PMEVFCEDEG 592

Query: 572 I 572
           I
Sbjct: 593 I 593


>At1g32590 hypothetical protein, 5' partial
          Length = 1263

 Score =  137 bits (344), Expect = 2e-32
 Identities = 127/556 (22%), Positives = 247/556 (43%), Gaps = 51/556 (9%)

Query: 55  KTERKKRREDELLCRGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLIS 114
           +TE  ++   +   + ++  ++   +       +++  +W++++ K++  +      L  
Sbjct: 15  RTELAEKTVKDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQR 74

Query: 115 KYFDFKMLDTK---PILQQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKK 171
               F++L+ K    I      +  + N ++ +  D+  +  V  I+  L   +      
Sbjct: 75  LRRSFEVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCA 134

Query: 172 L--LHNYEDFSLEKIQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPK 229
           +   +N ++ +++ +Q  L + E++  R   E     KA T       +  G     G  
Sbjct: 135 IEESNNIKELTVDGLQSSLMVHEQNLSRHDVEERVL-KAETQWRPDGGRGRGGSPSRGRG 193

Query: 230 KEHNKFKNNNGTKGPKGGCYVCGKPDHFARDCRQNKTKKEVNAVQVDDEII--ATVSEVM 287
           +   + +           C+ C K  H+  +C     +KE N V+++++++  A V ++ 
Sbjct: 194 RGGYQGRGRGYVNRDTVECFKCHKMGHYKAECPS--WEKEANYVEMEEDLLLMAHVEQIG 251

Query: 288 AVKGKVPGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTS 347
             + ++  W+ D+  S H+   +  F    +S   Q V++ ++ R  V G G + L    
Sbjct: 252 DEEKQI--WFLDSGCSNHMCGTREWFLEL-DSGFKQNVRLGDDRRMAVEGKGKLRLE-VD 307

Query: 348 GKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYE---------SEKLI-----LTRNGV 393
           G+   + +V  VP +  +L S   L + G++ + E         +EK +     +T+N +
Sbjct: 308 GRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRM 367

Query: 394 FV---GKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKL 450
           FV       S E     C    +I K +N         +WH R  H+    +  L + ++
Sbjct: 368 FVVFAAVKKSKETEETRCL--QVIGKANN---------MWHKRFGHLNHQGLRSLAEKEM 416

Query: 451 ISCNIHEFEK------CEICVKSKMIKKHF--KSVERKFNLLDLVHSDLCEFNGMLTRGG 502
           +   + +F+       C+IC+K K I++    +S  +   +L LVH+D+C      +  G
Sbjct: 417 VK-GLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSG 475

Query: 503 NRYFITFIDDCSRYTHVYLLKHKDDAFNAFKSYKAEVENQLNKTIKVLRSDRGGEYFSTK 562
            RY + FIDD SR    YLL  K + F  FK +KAEVE +  K +  LRSDRGGEY S +
Sbjct: 476 KRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSRE 535

Query: 563 FDSFCEEHDIIHECSA 578
           FD +C+E  I  + +A
Sbjct: 536 FDEYCKEFGIKRQLTA 551


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,320,677
Number of Sequences: 26719
Number of extensions: 588221
Number of successful extensions: 2330
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1981
Number of HSP's gapped (non-prelim): 202
length of query: 578
length of database: 11,318,596
effective HSP length: 105
effective length of query: 473
effective length of database: 8,513,101
effective search space: 4026696773
effective search space used: 4026696773
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)