BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0043b.1
(188 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19270 cytochrome P450, putative 32 0.20
At3g52370 unknown protein 30 1.00
At2g35860 unknown protein 30 1.00
At4g31970 Cytochrome P450-like protein 28 2.2
At3g11710 lysyl-tRNA synthetase 28 2.2
At3g04510 unknown protein 28 2.2
At2g03260 unknown protein 28 2.2
At1g58050 hypothetical protein 28 2.2
At3g43090 putative protein 28 3.8
At5g10550 bromodomain protein - like 27 5.0
At4g21720 putative protein 27 5.0
At2g17740 unknown protein 27 5.0
At1g13920 hypothetical protein 27 5.0
At3g18110 hypothetical protein 27 6.5
At1g49520 SWIB complex BAF60b domain containing protein 27 6.5
At4g20870 fatty acid hydroxylase - like protein 27 8.5
At3g11700 unknown protein 27 8.5
At1g72270 hypothetical protein 27 8.5
>At3g19270 cytochrome P450, putative
Length = 468
Score = 32.0 bits (71), Expect = 0.20
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 52 PVTKENLLY-SILEGHSVDIAAVMSNAIADAIQRDAPVMILPSI----ITDLCKFHNVPI 106
P +KE L+ S L H D + + + + + ++P I ++ L + N+PI
Sbjct: 104 PRSKEKLIGPSALFFHQGDYHSHIRKLVQSSFYPETIRKLIPDIEHIALSSLQSWANMPI 163
Query: 107 LSGHQEALKSEIDAWYVQIFCQ-EKSKEELLKEIRKKKEPKHPPAPQG-PQPSQMELLMA 164
+S +QE K D + IF E S +E+LK + + P P S + LMA
Sbjct: 164 VSTYQEMKKFAFDVGILAIFGHLESSYKEILKHNYNIVDKGYNSFPMSLPGTSYHKALMA 223
Query: 165 SMQRLETTHGEM---REENRA 182
Q L+T E+ R E RA
Sbjct: 224 RKQ-LKTIVSEIICERREKRA 243
>At3g52370 unknown protein
Length = 436
Score = 29.6 bits (65), Expect = 1.00
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 53 VTKENLLYSILEGHSVDIAAVMSNAIADAIQRDAPVMILPSIITDLCKFHNVPILSGHQE 112
+ ++L ++L+ H ++A ++ A+ L + + HN+ I + +
Sbjct: 30 INSNSVLVALLDSHYTELAELVEKAL------------LLQTLEEAVGQHNITIFAPRND 77
Query: 113 ALKSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAPQ 152
AL+ +D + Q K+ + L + PK +PQ
Sbjct: 78 ALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITSPQ 117
>At2g35860 unknown protein
Length = 445
Score = 29.6 bits (65), Expect = 1.00
Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 53 VTKENLLYSILEGHSVDIAAVMSNAIADAIQRDAPVMILPSIITDLCKFHNVPILSGHQE 112
+ ++L ++L+ H ++A ++ A+ L + + HN+ I + +
Sbjct: 34 INSNSVLVALLDSHYTELAELVEKAL------------LLQTLEEAVGKHNITIFAPRND 81
Query: 113 ALKSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAPQGPQPS 157
AL+ +D + + ++ + L + PK +PQ P S
Sbjct: 82 ALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLS 126
>At4g31970 Cytochrome P450-like protein
Length = 523
Score = 28.5 bits (62), Expect = 2.2
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Query: 140 RKKKEPKH--PPAPQGPQP--SQMELLMASMQRLETTHGEMREE 179
+K K+PKH PAP G P + LL Q L T G+M ++
Sbjct: 22 KKSKKPKHVKAPAPSGAWPIIGHLHLLSGKEQLLYRTLGKMADQ 65
>At3g11710 lysyl-tRNA synthetase
Length = 626
Score = 28.5 bits (62), Expect = 2.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 130 KSKEELLKEIRKKKEPKHPPAPQGPQPSQMELLMASMQRLETTHGEMREENRAQYRA 186
K KEE E R+K E K A Q P+ S + + A + ++ T ENR +Y A
Sbjct: 49 KQKEE---EKRRKDEEKAEKAKQAPKASSQKAVAADDEEMDAT---QYYENRLKYLA 99
>At3g04510 unknown protein
Length = 201
Score = 28.5 bits (62), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 128 QEKSKEELLKEIRKKKEPKHPPAPQGPQPSQMELLMAS 165
++K K K+I + + PP PQ PQ Q + +MA+
Sbjct: 157 EKKRKRVNNKQITQSQPQSQPPLPQQPQQEQGQSMMAN 194
>At2g03260 unknown protein
Length = 783
Score = 28.5 bits (62), Expect = 2.2
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 114 LKSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAP-----QGPQPSQMELLMASMQR 168
L S++ + Q + + LLKEI K KE +PP P G S+ L +
Sbjct: 7 LSSQMVQEWQQAYVNYDYLKTLLKEIIKLKEKTNPPPPPHHAVPGEGISRKMTLYRAFSG 66
Query: 169 LETTHGEMREENR 181
L T G+ R+ +R
Sbjct: 67 LVQTPGKKRQSSR 79
>At1g58050 hypothetical protein
Length = 1393
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/54 (25%), Positives = 28/54 (50%)
Query: 128 QEKSKEELLKEIRKKKEPKHPPAPQGPQPSQMELLMASMQRLETTHGEMREENR 181
+E + E+L ++ K++ + + QPSQ + + M+RLE E ++ R
Sbjct: 159 KEVPESEVLVRVKSKRDEEEEDSLSSCQPSQADWIHQYMKRLEEEELESSDDER 212
>At3g43090 putative protein
Length = 357
Score = 27.7 bits (60), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 129 EKSKEELLKEIRKKKEPKHPPAPQGPQPSQMELL 162
++ +E +L E +++ P PP P P P+QME++
Sbjct: 88 QQPQENVLPE-QQQPPPPPPPPPPPPPPAQMEIM 120
>At5g10550 bromodomain protein - like
Length = 678
Score = 27.3 bits (59), Expect = 5.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 134 ELLKEIRKKKEPKHPPAPQGPQPSQMELLMASMQRLETTHG 174
E+ ++ P PP P P P + + AS++ ET G
Sbjct: 416 EITRDPSPPPSPVQPPPPPSPPPQPVNQVEASLEVRETNKG 456
>At4g21720 putative protein
Length = 139
Score = 27.3 bits (59), Expect = 5.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 134 ELLKEIRKKKEPKHPPAPQGPQP 156
E++ +++ K+ P PP PQ P P
Sbjct: 97 EIVNKVKPKRPPPPPPKPQPPPP 119
>At2g17740 unknown protein
Length = 248
Score = 27.3 bits (59), Expect = 5.0
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 6/51 (11%)
Query: 98 LCKFHNVPILSGHQEALKSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHP 148
+C ++ +L + + KSE D + KS +L +EIR K P HP
Sbjct: 28 ICSGCDLDLLGAYFKCTKSECD------YFLHKSCFDLPREIRHKSHPDHP 72
>At1g13920 hypothetical protein
Length = 345
Score = 27.3 bits (59), Expect = 5.0
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 139 IRKKKEPKHPPAPQGP--QPSQMELLMASMQRLETTHGEMREENRA 182
+R + EP+ PP P P PS + L +R + H ++++ A
Sbjct: 195 LRTRSEPRAPPPPPPPLLSPSPLRLPPRETKRQSSEHTSRKDDSTA 240
>At3g18110 hypothetical protein
Length = 1429
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 88 VMILPSIITDLCKFHNVPILSGHQEALKSEIDAWYVQI 125
VM+L + D+ + +L+G E L SE+D W+ ++
Sbjct: 1156 VMLLLKALEDIGFDLPIRLLAGRPELLVSEVDGWFEKL 1193
>At1g49520 SWIB complex BAF60b domain containing protein
Length = 372
Score = 26.9 bits (58), Expect = 6.5
Identities = 11/31 (35%), Positives = 19/31 (60%)
Query: 128 QEKSKEELLKEIRKKKEPKHPPAPQGPQPSQ 158
+E+S+EE + +RK+K K PA +P +
Sbjct: 216 EEESREEEDRSVRKRKRKKRKPAKSEEKPKK 246
>At4g20870 fatty acid hydroxylase - like protein
Length = 237
Score = 26.6 bits (57), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 35 TSLLLRNIWPSLHVTSLPVTKENLLYSILEGH 66
T++LL +W LH+ + P T +L IL G+
Sbjct: 143 TAILLVPLWKLLHLLATPATAPAILGGILFGY 174
>At3g11700 unknown protein
Length = 462
Score = 26.6 bits (57), Expect = 8.5
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 53 VTKENLLYSILEGHSVDIAAVMSNAIADAIQRDAPVMILPSIITDLCKFHNVPILSGHQE 112
+ ++L ++L+ ++A ++ A+ L + D HN+ I + E
Sbjct: 39 INSNSVLVALLDSRYTELAELVEKAL------------LLQTLEDAVGRHNITIFAPRNE 86
Query: 113 ALKSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAPQGPQ 155
AL+ ++D + + Q + + L + PK + Q P+
Sbjct: 87 ALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPE 129
>At1g72270 hypothetical protein
Length = 2777
Score = 26.6 bits (57), Expect = 8.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 66 HSVDIAAVMSNA---IADAIQRDAPVMILPSIITDLCKFHNVPILSGHQEALKSEIDAWY 122
HSV+IA A I D + + +P +IT C HN + SG + E
Sbjct: 304 HSVEIAFAKVRARWRILDKKWKPETIEFMPFVITTGCLLHNFLVNSGDDDDSVEECVNG- 362
Query: 123 VQIFCQEKSKEELLKEIRKKKEPK 146
C+ E+ K+ K++E +
Sbjct: 363 ----CEAGDNGEMRKDDDKEEETR 382
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,188,622
Number of Sequences: 26719
Number of extensions: 164864
Number of successful extensions: 689
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 22
length of query: 188
length of database: 11,318,596
effective HSP length: 93
effective length of query: 95
effective length of database: 8,833,729
effective search space: 839204255
effective search space used: 839204255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0043b.1