BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0041.7
(1610 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 743 0.0
At2g15410 putative retroelement pol polyprotein 565 e-160
At3g31530 hypothetical protein 430 e-120
At2g13330 F14O4.9 361 2e-99
At2g14400 putative retroelement pol polyprotein 274 3e-73
At1g37200 hypothetical protein 260 5e-69
At2g14380 putative retroelement pol polyprotein 248 2e-65
At2g15100 putative retroelement pol polyprotein 240 6e-63
At2g10780 pseudogene 226 6e-59
At2g04670 putative retroelement pol polyprotein 219 1e-56
At4g10580 putative reverse-transcriptase -like protein 218 2e-56
At4g03800 214 2e-55
At3g11970 hypothetical protein 212 2e-54
At1g36590 hypothetical protein 212 2e-54
At2g07660 putative retroelement pol polyprotein 209 1e-53
At2g14650 putative retroelement pol polyprotein 207 4e-53
At1g35370 hypothetical protein 194 3e-49
At2g06890 putative retroelement integrase 190 7e-48
At2g13230 pseudogene 186 9e-47
At4g07600 167 5e-41
>At1g20390 hypothetical protein
Length = 1791
Score = 743 bits (1917), Expect = 0.0
Identities = 441/1252 (35%), Positives = 675/1252 (53%), Gaps = 48/1252 (3%)
Query: 371 HLKPLFVWAKVEDKGVNKILVDGGAAINLMPRFMMKRLGKTETDLIPHDMVLSDYEGKTS 430
H PL V + D V ++L+D G++++L+ + ++ + T+ + P L+ ++G
Sbjct: 567 HNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFV 626
Query: 431 TSMGAIMLNITAGTVSRSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDG 490
++G I L I G + F+V+ A YN++LG WIH + A+PST HQ + +G
Sbjct: 627 MTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG 686
Query: 491 VVENVQADQSYYLAEAGYVDKKNFEKSPLVDATKMEAQDPLEKVDLGDGSKKRPTYISSL 550
+ + + +++E+S L E V++ + R + +
Sbjct: 687 IF-------TLRAPKEAKTPSRSYEESELCRT---------EMVNIDESDPTRCVGVGAE 730
Query: 551 IDPELRGRMIELLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVL 610
I P +R +I LLK FA ++M G+ + +L + K VK R+ P+
Sbjct: 731 ISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERA 790
Query: 611 VKIKEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPI 670
+ EE+E+LL+ I KY EWLAN V V KKNGK RVC+D+ DLN A PKD Y +P
Sbjct: 791 RAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPH 850
Query: 671 AEMMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAG 730
+ +V++ +G+ LS +D +SGYNQI + K+D KT+F GTY + VM FGLKNAG
Sbjct: 851 IDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDR--GTYCYKVMSFGLKNAG 908
Query: 731 ATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCA 790
ATYQR +N + D I ++VYIDD++VKS ++H+ HL K F+ + +G+K+NP KC
Sbjct: 909 ATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCT 968
Query: 791 FGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDK 850
FGV +G+FLG+VV K+GIE N + +AIL+ P + +++Q L G++ L RFI +DK
Sbjct: 969 FGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDK 1028
Query: 851 TKPFSSLLRLKREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETIG 910
PF +L LKR F W+ ++AF++LK+YL+ PP+++ P G+ + LYI+ +D +
Sbjct: 1029 CLPFYNL--LKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVS 1086
Query: 911 SMLAQEDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSH 970
S+L +ED G +R +FY S+ L +A+TRY +IEK L + S KL+ Y + + V +
Sbjct: 1087 SVLVREDR-GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTD 1145
Query: 971 FDIIKHMLSKPILHSRIGKWSLALTEYSLTYAPLKTIKGQAVADFLADHTLPE-EIAYVG 1029
++ L P R+ KW++ L+EY + + P +K Q +ADFL + L E A G
Sbjct: 1146 -QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSG 1204
Query: 1030 L--QPWKLFFDDSSHKEGSGIGMFIVSPQGIPTKFMFRIRESCSNNESEYEALVSGLEIL 1087
+ W L+ D SS GSGIG+ +VSP + FR+R +NN +EYE L++GL +
Sbjct: 1205 NRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLA 1264
Query: 1088 LALGAKNVEVKGDSELVVKQLTKEYKCISKNLAKYYVKAMSLLANFDQAGVSYIPRVSNQ 1147
+ + DS+L+ QL+ EY+ ++ + Y + +F+ +S IPR N
Sbjct: 1265 AGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNA 1324
Query: 1148 EANELAQIASGYMIDKQKLKELIRI----KEKLSPLDLEVMV--------IDNLTPNDWR 1195
A+ LA +A + L+ +I + K + D +V D P DWR
Sbjct: 1325 PADALAALA---LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWR 1381
Query: 1196 KPIVEYLQNPVGSTD----IKVKYRALNYTIIGNELFKKNVDGTLLKCLSEVDAFIAVSA 1251
I +YL + +D +++ +A YT++ L K + G +L CL + +
Sbjct: 1382 VEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKE 1441
Query: 1252 AHGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSI 1311
H G G H G + L + G YWPT++ DC + C+ CQ+H+ H P L +
Sbjct: 1442 THEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAG 1501
Query: 1312 IKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAIPLQSVTQETVIEFIQNHI 1371
+ +PF WA+D++G + PA SRQ ++I+V DYF KWVEA ++ V F+ I
Sbjct: 1502 VAPYPFMRWAMDIVGPM-PA-SRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFI 1559
Query: 1372 VYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISLIK 1431
+ R GLP + TD G+ F+ F SW I+L S P Y Q NGQ EA NK ++S +K
Sbjct: 1560 ICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLK 1619
Query: 1432 KHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEAVLPAEVYLQSFRIQRQED 1491
K + K +W + L VLW+YR +PR AT TPF AYG EA+ PAEV S R
Sbjct: 1620 KRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVK 1679
Query: 1492 IPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAYNKKVKNRSFVTGDYVWKVILP 1551
P E+ MMLD L +L+E R AL + + AK YN+KV NR F GD V + +
Sbjct: 1680 NP-ELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFE 1738
Query: 1552 TDKKDRAYGKWAPNWEGPFKVKKVLSNNAYVIKELSGQRQFVTINDKYLKAY 1603
+ A GK NWEG ++V K++ Y + +SG T N +LK Y
Sbjct: 1739 NTAEINA-GKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRY 1789
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 565 bits (1455), Expect = e-160
Identities = 360/1150 (31%), Positives = 561/1150 (48%), Gaps = 131/1150 (11%)
Query: 518 PLVDATKMEAQDPLEKVDLGDGSKKRPTYISSLIDPELRGRMIELLKEFKDCFA*DNDEM 577
P D + + +V++ + R I + EL+ ++ L++ FA ++M
Sbjct: 703 PTQDERPNPQKGTVVQVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDM 762
Query: 578 PGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWLAN 637
PG+ + +L + K +K R+ PD + EE+++LL I +Y +WL N
Sbjct: 763 PGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRN 822
Query: 638 VVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIF 697
V V KKNGK RVCIDF DLN A PKD + +P + +V++ AG+E LS +D +SGYNQI
Sbjct: 823 PVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQIL 882
Query: 698 IAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLV 757
+ + D KT F GTY + VMPFGLKNAGATY R++N +F D ++ M+VYIDD++
Sbjct: 883 MHQNDREKTVFITDQ--GTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDML 940
Query: 758 VKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 817
VKS +EH++HLR+ F+ + + +K+NP KC FGV +G+FLG++V ++GIE N + A
Sbjct: 941 VKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISA 1000
Query: 818 ILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLRLKREDIFRWEA*HQKAFD 877
I+D P + +++Q L+G++ L RFI +DK PF LLR + F W+ ++
Sbjct: 1001 IIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKR--FEWDEKCEE--- 1055
Query: 878 ELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQEDEDGIERAVFYLSRVLNDAKT 937
G+ + LYI+ + + +L +ED G + +FY+S+ L+ A+
Sbjct: 1056 -----------------GETLYLYIAVSTSAVSGVLVREDR-GEQHPIFYVSKTLDGAEL 1097
Query: 938 RYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDIIKHMLSKPILHSRIGKWSLALTEY 997
RY +EKL + S KL+ Y K V V ++ ++ +L P R+ KW++ L+EY
Sbjct: 1098 RYPTLEKLAFAVVISARKLRPYFKSYTVEVLTN-QPLRTILHSPSQSGRLAKWAVELSEY 1156
Query: 998 SLTYAPLKTIKGQAVADFLADHTLPEEIAYVGLQPWKLFFDDSSHKEGSGIGMFIVSPQG 1057
+ Y K H P +P++ +
Sbjct: 1157 DIAYKNRTCAKS---------HRAPT-------RPYR---------------------RS 1179
Query: 1058 IPTKFMFRIRESCSNNESEYEALVSGLEILLALGAKNVEVKGDSELVVKQLTKEYKCISK 1117
IP + + R SNNE+EYEAL++GL + + K ++ DS+LV Q + Y+ ++
Sbjct: 1180 IPCRKVDLARFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNE 1239
Query: 1118 NLAKYYVKAMSLLANF-----------DQAGVSYIPRVSNQEANELAQIASGYMIDKQ-- 1164
+ Y L NF D A + +++ +L ++ ID
Sbjct: 1240 RMDAYLKVVRELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSI 1299
Query: 1165 KLKELIRIKEKLSPLDLE------VMVI-------------------------------- 1186
K++ I + + +DL VMVI
Sbjct: 1300 KIQGTITKPSEYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRS 1359
Query: 1187 ---------DNLTPNDWRKPIVEYLQNPVGSTDI----KVKYRALNYTIIGNELFKKNVD 1233
D+ +W + I Y+ + + D +++ R+ YT+ L + +
Sbjct: 1360 DDSNRSADSDSPASTNWIEEIRSYIADRIVPKDKWAARRLRARSAQYTLPHEHLLRWSAT 1419
Query: 1234 GTLLKCLSEVDAFIAVSAAHGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQD 1293
G LL CL + +A + H G G H G + + + G YWPT+ DC ++ C+
Sbjct: 1420 GVLLSCLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEK 1479
Query: 1294 CQKHSGIQHVPASELHSIIKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAI 1353
CQ H+ H+P+ L + + +PF WA+D+I PA SRQ KYI+V DYF KW EA
Sbjct: 1480 CQGHAPFIHIPSEVLQTAMPPYPFMRWAMDIIRPF-PA-SRQKKYILVMTDYFTKWFEAE 1537
Query: 1354 PLQSVTQETVIEFIQNHIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYA 1413
+ + V F+ +I+ GLP + TD GT F + F W I+L S P Y
Sbjct: 1538 SYARIQSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYP 1597
Query: 1414 QANGQVEAANKILISLIKKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEA 1473
Q NGQ EA NK ++ +KK + K +W + L VLW+YR +PR +T TPF L YG EA
Sbjct: 1598 QCNGQAEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEA 1657
Query: 1474 VLPAEVYLQSFRIQRQEDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAYNKK 1533
+ P E L + R + P+ + M+LD L L+E+R AL + + AK YNKK
Sbjct: 1658 LAPCEAGLPTVRRSMLINDPT-LNDQMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKK 1716
Query: 1534 VKNRSFVTGDYVWKVILPTDKKDRAYGKWAPNWEGPFKVKKVLSNNAYVIKELSGQRQFV 1593
VKNR F GD V + + + A GK +WEGP+ + KV+ Y + + G
Sbjct: 1717 VKNRLFAEGDLVLRKVFENTVEQDA-GKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPR 1775
Query: 1594 TINDKYLKAY 1603
+ N LK Y
Sbjct: 1776 SWNSANLKRY 1785
>At3g31530 hypothetical protein
Length = 831
Score = 430 bits (1106), Expect = e-120
Identities = 278/831 (33%), Positives = 412/831 (49%), Gaps = 119/831 (14%)
Query: 701 EDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLVVKS 760
ED KTAF + Y VMPFGLKNAGATY+R +N IF I M+VYIDD++VKS
Sbjct: 99 EDQEKTAFYTEQGIFCYR--VMPFGLKNAGATYERFVNKIFALQIGKTMEVYIDDMLVKS 156
Query: 761 PSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILD 820
+ +H+SHLR+ F+++ ++ +K+NP KC FGV + GIE N + +A+L
Sbjct: 157 MTEKDHISHLRECFKQLNLYNVKLNPAKCRFGV-----------RSGIEANPKQIEALLG 205
Query: 821 TSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLRLKREDIFRWEA*HQKAFDELK 880
+ P +K+++Q L G+V L RFI ++K F +LR R F W ++AF ELK
Sbjct: 206 MASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLR--RNKKFEWTTRCEEAFQELK 263
Query: 881 NYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQEDEDGIERAVFYLSRVLNDAKTRYT 940
YLA PP++ P+ G+P LY++ +D + L +ED G ++ +FY+S+ A++RY
Sbjct: 264 KYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDR-GEQKLIFYVSQTFTSAESRYP 322
Query: 941 MIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDIIKHMLSKPILHSRIGKWSLALTEYSLT 1000
+EKL L + S KL+ Y + ++V ++ +L P R+ KW++ L+EY +
Sbjct: 323 QMEKLALAVVMSAQKLRPYFQSHSIIVMGSMP-LRVILHSPSQSGRLAKWTIELSEYDIE 381
Query: 1001 YAPLKTIKGQAVADFLADHTLPEEIAYVGLQPWKLFFDDSSHKEGSGIGMFIVSPQGIPT 1060
Y K Q +ADF+ + E W L D SS K+GSG+G+ + SP G
Sbjct: 382 YQNKTCAKSQVLADFIVELPTKEARENPLDTTWLLHVDGSSSKQGSGVGIRLTSPTG--- 438
Query: 1061 KFMFRIRESCSNNESEYEALVSGLEILLALGAKNVEVKGDSELVVKQLTKEYKCISKNLA 1120
+NN +EYEALV+GL + L DS+L+ Q EY K +
Sbjct: 439 --------EATNNVAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKME 490
Query: 1121 KYYVKAMSLLANFDQAGVSYIPRVSNQEANELAQIASGYMIDKQKLKELIRI-------- 1172
Y + +L NFD+ ++ IPR N A+ LA +AS LK +I +
Sbjct: 491 AYLIHVQNLAKNFDEFELTRIPRGENTSADALAALAS---TSDTSLKRVIPVEFIEKPSI 547
Query: 1173 ----KEKLSPLDLEVMVIDNLTPND----WRKPIVEYLQNPVGSTD----IKVKYRALNY 1220
+E + P+ + D P+D W +PI+ Y+ +D K+K +A +
Sbjct: 548 ELGKEEHVLPIQISA---DQDDPDDCNSEWMEPIISYISEGKLPSDKWKARKLKAQAARF 604
Query: 1221 TIIGNELFKKNVDGTLLKCLSEVDAFIAVSAAHGGLCGAHQAGAKMKWILFRQGMYWPTI 1280
++ +L+K + G L+ C+ E +A + MK I G + PTI
Sbjct: 605 VLVDTKLYKWRLSGPLMTCV-EAEAICKI----------------MKEI--HSGSHAPTI 645
Query: 1281 MKDCIEYAKGCQDCQKHSGIQHVPASELHSIIKSWPFRGWAIDLIGEIHPALSRQHKYII 1340
H PA L SI +PF W++D+IG +HP S+Q K ++
Sbjct: 646 ---------------------HQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVL 682
Query: 1341 VAIDYFIKWVEAIPLQSVTQETVIEFIQNHIVYRFGLPESLTTDQGTMFVGRKVAAFAES 1400
V DYF KW+EA S+ V F+ HI+ R G+P + TD G+ F+ + F +
Sbjct: 683 VLTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDK 742
Query: 1401 WGIKLLTSIPYYAQANGQVEAANKILISLIKKHVGRKPKSWHESLSQVLWAYRNSPREAT 1460
WGI+L S P Y Q NGQ EAAN+ L VLW +R +PR AT
Sbjct: 743 WGIRLSKSTPRYPQGNGQAEAANE--------------------LEGVLWLHRTTPRRAT 782
Query: 1461 GTTPFRLAYGQEAVLPAEVYLQSFRIQ-RQEDIPSEVYWNMMLDELVNLDE 1510
TPF YG E V+PAE+ + S R E+ P LDEL +DE
Sbjct: 783 RETPFASIYGTECVIPAEMIVPSLRRSLSPENDPDNT--QTPLDELDLIDE 831
Score = 33.5 bits (75), Expect = 1.0
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 432 SMGAIMLNITAGTVSRSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDGV 491
++G I L + A V++ F + YN ++G W++ AV ST H + D V
Sbjct: 2 TLGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKFPTSDSV 61
Query: 492 VENV 495
E +
Sbjct: 62 WEKL 65
>At2g13330 F14O4.9
Length = 889
Score = 361 bits (927), Expect = 2e-99
Identities = 259/850 (30%), Positives = 416/850 (48%), Gaps = 91/850 (10%)
Query: 314 KQGMTLPNPTQEKVKVAARDEDEDMLEDFDESDGEDLNIICIDDKAIFQRPSEHM---KS 370
++ +T P P +K +++ D+ L+ + L+ D I SE K
Sbjct: 3 EKSVTTPPPAAQKKNMSSATTDQ--LDQNSSKESRFLHKRQKPDDGITFWESEITDLDKP 60
Query: 371 HLKPLFVWAKVEDKGVNKILVDGGAAINLMPRFMMKRLGKTETDLIPHDMVLSDYEGKTS 430
H L + V + ++ I+VD G++++++ KR G ++ L L+ + G T+
Sbjct: 61 HDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQGRKTPLTGFAGDTT 120
Query: 431 TSMGAIMLNITAGTVSRSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDG 490
S+G I L A V + T F+VV KA +N +LGR W+H + AVPST HQ I G
Sbjct: 121 FSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCIKFPSYKG 180
Query: 491 VVENVQADQSYYLAEAGYVDKKNFEKSPLVDATKMEAQDPLEKVDLGDGSKKRPTYISSL 550
+ + +S G ++E D + +D L ++ + SL
Sbjct: 181 IAVVYGSQRSSRKCYMG-----SYEDIKKADPVVLMIEDELAEMKT----------VRSL 225
Query: 551 IDPELRGRMIELLKEFKDCF-A*DNDEMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDV 609
DP RG L+ + C D G+ DL L ++ED +
Sbjct: 226 -DPSQRGTRKSLITQV--CIDESDPKRCVGIGHDL---DLTVRED--------------L 265
Query: 610 LVKIKEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 669
+ +KE + F ++ ++ ++ ++KNGK RVCIDFRDLN A PKD + +P
Sbjct: 266 ITFLKENKD-----SFAWSSANLQGIS-----LEKNGKWRVCIDFRDLNKACPKDSFPLP 315
Query: 670 IAEMMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNA 729
+ +V++ HE LS +D + GYNQI + ++ KTAF GTY + VMPFGLKNA
Sbjct: 316 HIDRLVEATVEHEKLSFMDAFYGYNQILMRRDGQEKTAFITDR--GTYYYKVMPFGLKNA 373
Query: 730 GATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKC 789
G TYQR++N +F D + ++VYIDD++VKS +H+ LR+ F+ + +K+NP KC
Sbjct: 374 GTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEKDHVPQLRECFKILIKFEMKLNPEKC 433
Query: 790 AFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSD 849
+F V + +FL ++V ++GIE N + A ++ P +++Q L G++ L FI ++
Sbjct: 434 SFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSPKMAREVQRLTGRIPALNGFISRSAN 493
Query: 850 KTKPFSSLLRLKREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETI 909
K PF LR +E F W ++AF +LK YL PP++ P KG+P+ LY
Sbjct: 494 KCVPFYQPLRKGKE--FDWNKDCEQAFKQLKAYLTEPPILAKPEKGEPLYLY-------- 543
Query: 910 GSMLAQEDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIK--PIDVMV 967
+ R +EKL L + S KL+ Y + PI VM
Sbjct: 544 -----------------------TNRDKRCPAMEKLALTVVMSVRKLRLYFQSHPIVVMT 580
Query: 968 FSHFDIIKHMLSKPILHSRIGKWSLALTEYSLTYAPLKTIKGQAVADFLADHTLPEEIAY 1027
I H L++ R+ KW++ L EY + Y ++K Q +ADF+ L +
Sbjct: 581 SQPIRTILHSLTQS---GRLAKWAIELREYDIEYRTRTSLKAQVLADFVIKLPLADLDGT 637
Query: 1028 VGLQPWKLFFDDSSHKEGSGIGMFIVSPQGIPTKFMFRIRESCSNNESEYEALVSGLEIL 1087
+ W L D SS+++GSG+G+ + SP G + ++ + SNNESEYEAL++G+++
Sbjct: 638 NSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLA 697
Query: 1088 LALGAKNVEVKGDSELVVKQLTKEYKCISKNLAKYYVKAMSLLANFDQAGVSYIPRVSNQ 1147
G + + DS+LV Q EY+ + + Y +L F+ ++ IPR N
Sbjct: 698 QEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENT 757
Query: 1148 EANELAQIAS 1157
A+ LA +AS
Sbjct: 758 SADTLAALAS 767
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 274 bits (700), Expect = 3e-73
Identities = 135/316 (42%), Positives = 207/316 (64%), Gaps = 5/316 (1%)
Query: 613 IKEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAE 672
+ +E+++LL+ IR +Y +WLAN V V KKNGK RVCIDF DLN A PKD + +P +
Sbjct: 480 VNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHID 539
Query: 673 MMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGAT 732
+V+S AG+E LS +D +SGYNQI + ED KT F G Y + VMPFGL+NAGAT
Sbjct: 540 RLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDR--GIYCYKVMPFGLRNAGAT 597
Query: 733 YQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFG 792
Y R++N +F + + M+VYIDD+++KS +++H+ HL + F + + +K+NP KC FG
Sbjct: 598 YPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFG 657
Query: 793 VIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTK 852
V +G+FLG++V K+GIE N N+ A L+ P + K++Q L G++ L RFI +DK+
Sbjct: 658 VPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSL 717
Query: 853 PFSSLLRLKREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSM 912
PF +L+ +E F W+ ++AF +LK YL PPV+ P + + LY+S ++ + +
Sbjct: 718 PFYQILKGNKE--FLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGV 775
Query: 913 LAQEDEDGIERAVFYL 928
L +ED G ++ ++Y+
Sbjct: 776 LIREDR-GEQKPIYYI 790
Score = 227 bits (578), Expect = 5e-59
Identities = 179/610 (29%), Positives = 272/610 (44%), Gaps = 97/610 (15%)
Query: 1018 DHTLPEEIAYVGLQPWKLFFDDSSHKEGSG-IGMFIVSPQGIPTKFMFRIRESCSNNESE 1076
D +LP Y L+ K F D +E G + ++ SP P F + E S
Sbjct: 714 DKSLP---FYQILKGNKEFLWDEKCEEAFGQLKAYLTSP---PVLFKPELDEKLYLYVSV 767
Query: 1077 YEALVSGLEILLALGAKNVEVKGDSELVVKQLTKEYKCISKNLAKYYVKAMSLLANFDQA 1136
VSG+ I G E K ++V Q +Y+ + Y L NF +
Sbjct: 768 SNHAVSGVLIREDRG----EQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823
Query: 1137 GVSYIPRVSNQEANELAQIASGYMIDKQKLKELIRIKEKLSPLDLEVMVIDN-------- 1188
+ IPR N A+ LA +AS + + + I E+ + E V+
Sbjct: 824 ELIRIPRGQNTTADALAALASTSDPEVNSIIPVECISERSIKEEKEAFVVTRSRAAARDR 883
Query: 1189 ------LTPNDWRKPI--------------VEYLQNPVGSTDIKVKYRA-LNYTIIG--- 1224
L P RK +E ++ + I+ + ++ I+
Sbjct: 884 GDTAVELPPVKRRKSKEATVPKPAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNE 943
Query: 1225 -------NELFKKNVDGTLLKCLSEVDAFIAVSAAHGGLCGAHQAGAKMKWILFRQGMYW 1277
N L+++ V L + I +S H GLCG+H +G M + + + YW
Sbjct: 944 HPEPEALNSLYRRGVSDPYLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYW 1003
Query: 1278 PTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSIIKSWPFRGWAIDLIGEIHPALSRQHK 1337
PT++ DC++YA+ C+ CQ H+ + H P+ SI +PF W++D+IG +H + +R +
Sbjct: 1004 PTMITDCVKYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLHRS-TRGVQ 1062
Query: 1338 YIIVAIDYFIKWVEAIPLQSVTQETVIEFIQNHIVYRFGLPESLTTDQGTMFVGRKVAAF 1397
Y++V DYF KW+EA A
Sbjct: 1063 YLLVLTDYFSKWIEA------------------------------------------EAI 1080
Query: 1398 AESWGIKLLTSIPYYAQANGQVEAANKILISLIKKHVGRKPKSWHESLSQVLWAYRNSPR 1457
+WGIK+ S Y Q NGQ EAANK ++S +KK + W++ L VLWAYR +PR
Sbjct: 1081 LLNWGIKVSYSTLRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPR 1140
Query: 1458 EATGTTPFRLAYGQEAVLPAEVYLQSFRIQRQEDIPSEVYWNMMLDE-LVNLDEERVLAL 1516
+TG TPF L YG +AV+PAE+ + R R E +E + MLD+ L ++E R AL
Sbjct: 1141 RSTGETPFSLVYGMKAVVPAELNVPGLR--RTEAPLNEKENSAMLDDSLDTINERRDQAL 1198
Query: 1517 DVLTRQKDRIAKAYNKKVKNRSFVTGDYVWKVILPTDKKDRAYGKWAPNWEGPFKVKKVL 1576
+ + A+ YN KVK+R F GDYV K + +KK+ GK NWEGP+ V +V+
Sbjct: 1199 IQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVF-DNKKEEGAGKLGINWEGPYIVTEVV 1257
Query: 1577 SNNAYVIKEL 1586
N Y +K+L
Sbjct: 1258 RNGVYRLKDL 1267
>At1g37200 hypothetical protein
Length = 1564
Score = 260 bits (664), Expect = 5e-69
Identities = 150/409 (36%), Positives = 227/409 (54%), Gaps = 25/409 (6%)
Query: 435 AIMLNITAGTVSRSTLFIVVPS---KANYNLLLGREWIHGVGAVPSTLHQRISIWKPDGV 491
AI++ I G S + I S KA +N +LGR W+H + AVPST HQ I G+
Sbjct: 504 AIVIRIDVGNYKLSRIMIDTGSSVDKAPFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGI 563
Query: 492 VE---NVQADQSYYLAEAGYVDKKNFE----KSPLVDATKMEAQDP---------LEKVD 535
+ ++ + Y+ + K + L + + + DP + +V
Sbjct: 564 AVIYGSQRSSRRCYMGSYELIKKAELVVLMIEDKLAEMKTVRSSDPSQCGPQKSSITQVY 623
Query: 536 LGDGSKKRPTYISSLIDPELRGRMIELLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDK 595
+ + K+ + +DP +R I LKE KD FA + + G+S ++ +L +
Sbjct: 624 IDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQGISLEVTSHELNVDPTY 683
Query: 596 KLVK*LPRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFR 655
+ +K R+ P+ +++E++RLL+ IR KY +WLAN V V KNGK RVCIDF
Sbjct: 684 RPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPVVVKNKNGKWRVCIDFM 743
Query: 656 DLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALG 715
DLN A PKD + +P + +V + AGHE LS +D +SGYNQI + +D KTAF
Sbjct: 744 DLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMRPDDQEKTAFI------ 797
Query: 716 TYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFE 775
T + VMPFGLKN GATYQR++N +F D + M++YIDD++VKS +HL LR+ F+
Sbjct: 798 TDCYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSAHEKDHLPQLRECFK 857
Query: 776 RMRIHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPP 824
+ +K+NP KC+FGV +G+FLG++V ++GIE N + A +D P
Sbjct: 858 ILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPKQIAAFIDMPSP 906
Score = 211 bits (538), Expect = 2e-54
Identities = 146/547 (26%), Positives = 252/547 (45%), Gaps = 81/547 (14%)
Query: 914 AQEDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIK--PIDVMVFSHF 971
A D +G ++ ++Y+S+ L DA+T Y +EKL L + S KL+ Y++ PI VM
Sbjct: 924 APPDHEG-QKPIYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPIVVMTSQPI 982
Query: 972 DIIKHMLSKPILHSRIGKWSLALTEYSLTYAPLKTIKGQAVADFLADHTLPEEIAYVGLQ 1031
I H ++ SR+ KW++ L+EY + Y + K Q +ADF+ + L + +
Sbjct: 983 RTILHSTTQS---SRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADLDGTNSNK 1039
Query: 1032 PWKLFFDDSSHKEGSGIGMFIVSPQGIPTKFMFRIRESCSNNESEYEALVSGLEILLALG 1091
W L D SS+++GSG G+ + SP G + FR+ + SNNESEYEAL+ G+++ +
Sbjct: 1040 KWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNESEYEALIDGIKLAQGMR 1099
Query: 1092 AKNVEVKGDSELV---------------------VKQLTKEYKCIS-------KNLAKYY 1123
+++ DS+LV VK LT++++ +N +
Sbjct: 1100 IRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSTDA 1159
Query: 1124 VKAMSLL-------------------------ANFDQAGVSYIPRVSNQEANELAQIASG 1158
+ A++ A + + RV+ +A+
Sbjct: 1160 LAALASTLDPFVKRIIPVEGIEHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAA 1219
Query: 1159 YMIDKQKLKELIRIKEKLSPLDLEVMVIDNLTPNDWRKPIVEYLQNPVGSTDI----KVK 1214
+ + +R E+L+ + E NDWR PI++Y++ + D K+K
Sbjct: 1220 AEAGAAEEEAKLRTPEQLASYEPEPY-------NDWRIPIIDYIERGITPPDKWETRKLK 1272
Query: 1215 YRALNYTIIGNELFKKNVDGTLLKCLSEVDAFIAVSAAHGGLCGAHQAGAKMKWILFRQG 1274
++ Y I+ L K++V G + C + + H G CG+H +G ++ I+
Sbjct: 1273 AQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQCGSHYSGRTLRCIM---- 1328
Query: 1275 MYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSIIKSWPFRGWAIDLIGEIHPALSR 1334
+ DCI ++ C CQ+H+ H P E+ SI +PF W++D++ + + +
Sbjct: 1329 ------LADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPFMKWSMDVVRPMEASGGK 1382
Query: 1335 QH-KYIIVAIDYFIKWVEAIPLQSVTQETVIEFIQNHIVYRFGLPESLTTDQGTMFVGRK 1393
+ K ++V DY KW+E Q VT++ V F+ +IVYR G+P + TD G K
Sbjct: 1383 KRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYRHGIPYEIVTDNGLTSPREK 1442
Query: 1394 VAAFAES 1400
FA S
Sbjct: 1443 SKHFATS 1449
Score = 47.8 bits (112), Expect = 5e-05
Identities = 27/97 (27%), Positives = 49/97 (49%), Gaps = 2/97 (2%)
Query: 1508 LDEERVLALDVLTRQKDRIAKAYNKKVKNRSFVTGDYVWKVILPTDKKDRAYGKWAPNWE 1567
+DE R A+ + + + YN +K R F G+ V + + ++ A GK NWE
Sbjct: 1467 IDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNA-GKLGTNWE 1525
Query: 1568 GPFKVKKVLSNNAY-VIKELSGQRQFVTINDKYLKAY 1603
GP+++ +V+ + Y ++K +G + N +LK Y
Sbjct: 1526 GPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 248 bits (634), Expect = 2e-65
Identities = 129/284 (45%), Positives = 182/284 (63%), Gaps = 2/284 (0%)
Query: 576 EMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWL 635
+M G+ ++ +L + KLVK R+ P+ + +E+++LL I KY EWL
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 636 ANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQ 695
AN V V KKN K RVCIDF DLN A PKD + +P + MV++ G+E LS +D +SGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 696 IFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDD 755
I + K+D KT+F GTY + VMPFGLKN GA YQR++N +F + M+VYIDD
Sbjct: 596 IPMHKDDQEKTSFIIDR--GTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDD 653
Query: 756 LVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKA 815
++VKS +H+ HL+ FE + + +K+NP KC FGV +G+FLG++V K+GIE N +
Sbjct: 654 MLVKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQI 713
Query: 816 KAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLR 859
+AILD P +KK++Q L G++ L RFI +DK+ PF LLR
Sbjct: 714 RAILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
Score = 71.2 bits (173), Expect = 4e-12
Identities = 38/130 (29%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 371 HLKPLFVWAKVEDKGVNKILVDGGAAINLMPRFMMKRLGKTETDLIPHDMVLSDYEGKTS 430
H PL + + + V +IL+D G+++N++ + +++++ + + P L+ ++G T
Sbjct: 344 HNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLTGFDGNTM 403
Query: 431 TSMGAIMLNITAGTVSRSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDG 490
+ G I L I G + F+VV YN++LG WIH + A+PS+ HQ I I G
Sbjct: 404 MTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCIKIPTSIG 463
Query: 491 VVENVQADQS 500
+E ++ +Q+
Sbjct: 464 -IETIRGNQN 472
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 240 bits (612), Expect = 6e-63
Identities = 157/550 (28%), Positives = 243/550 (43%), Gaps = 74/550 (13%)
Query: 1111 EYKCISKNLAKYYVKAMSLLANFDQAGVSYIPRVSNQEANELAQIASGYMIDKQKLKELI 1170
EY+ + Y + F+Q ++ IPR N AN LA +AS + + ++ +
Sbjct: 795 EYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPRVIPVE 854
Query: 1171 RIKEKLSPLD--------------------------------------LEVMVIDNLTPN 1192
I + LD E++ +L N
Sbjct: 855 TISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQSLPDN 914
Query: 1193 ---------------DWRKPIVEYLQNPVGSTDI----KVKYRALNYTIIGNELFKKNVD 1233
DWR+PI +Y+ N + K+K + I + L+++
Sbjct: 915 HNAPLPDQPPHDWGADWREPIRDYILNGTLPAEKWAARKLKATCARFCIANDILYRRIFS 974
Query: 1234 GTLLKCLSEVDAFIAVSAAHGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQD 1293
C+ + H G CG H G + + + + G YWPT++ DC YA+ C+
Sbjct: 975 APDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQ 1034
Query: 1294 CQKHSGIQHVPASELHSIIKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAI 1353
CQKH+ + PA L ++ +PF W +D++G +H + + VEA
Sbjct: 1035 CQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVST---------------RGVEAA 1079
Query: 1354 PLQSVTQETVIEFIQNHIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYA 1413
++T V FI I+ R GLP + TD G+ F+ + F E W I+L S P Y
Sbjct: 1080 AYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYP 1139
Query: 1414 QANGQVEAANKILISLIKKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEA 1473
Q NGQ EA NK +IS +KK + +W L VLWA R +PR AT TPF L YG EA
Sbjct: 1140 QGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEA 1199
Query: 1474 VLPAEVYLQSFRIQRQEDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAYNKK 1533
V+PAE+ + S R R +E M++D + +DE R AL + + A+ YN
Sbjct: 1200 VIPAEIKVPSARRIRNPQNETENN-EMIIDVIDTIDERRNRALARMQNYHNAGARYYNSN 1258
Query: 1534 VKNRSFVTGDYVWKVILPTDKKDRAYGKWAPNWEGPFKVKKVLSNNAYVIKELSGQRQFV 1593
V+NRSF G V + + +K ++ GK +WEGP+K+ V+ N Y + + G+
Sbjct: 1259 VRNRSFEVGTLVLRRV-QQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINMEGKTVRR 1317
Query: 1594 TINDKYLKAY 1603
N +LK +
Sbjct: 1318 AWNSMHLKRF 1327
Score = 134 bits (337), Expect = 4e-31
Identities = 79/181 (43%), Positives = 103/181 (56%), Gaps = 4/181 (2%)
Query: 576 EMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWL 635
+M G+S +++ +L + K VK R+ PD + E+ RLL IR KY EWL
Sbjct: 411 KMTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWL 470
Query: 636 ANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQ 695
AN V V KKNGK RVC+DF DLN A KD + +P + +V+S GHE LS +D +SGYNQ
Sbjct: 471 ANPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQ 530
Query: 696 IFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDD 755
I + ED KT+F GTY + VMPFGLKN A Y R T E + ++D
Sbjct: 531 ILMNPEDQEKTSFITE--CGTYYYKVMPFGLKN--AVYFRCHRTRNRSEFEADKRFPVND 586
Query: 756 L 756
L
Sbjct: 587 L 587
Score = 68.2 bits (165), Expect = 4e-11
Identities = 42/137 (30%), Positives = 74/137 (53%), Gaps = 11/137 (8%)
Query: 866 FRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETI-GSMLAQEDEDGIERA 924
F W ++AF +LK YL+ P V+ G+ + LYI+ ++ + G + E D +R
Sbjct: 629 FIWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSD--KRP 686
Query: 925 VFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDIIKHMLSKPILH 984
+FY+ KTRY M+EKL L + + KL+ Y + ++V + ++ +L P
Sbjct: 687 IFYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSLP-LRTILHSPTQS 738
Query: 985 SRIGKWSLALTEYSLTY 1001
R+GKW++ L+E+ L +
Sbjct: 739 GRLGKWAIELSEFDLEF 755
Score = 51.2 bits (121), Expect = 5e-06
Identities = 43/167 (25%), Positives = 69/167 (40%), Gaps = 3/167 (1%)
Query: 333 DEDEDMLEDFDESDGEDLNIICIDDKAIFQRPSEHMKSHLKPLFVWAKVEDKGVNKILVD 392
D E L +F +S E L + E ++ L W E++ L
Sbjct: 254 DITEAHLWNFSQSADEPLRTYIYRVQGNHVNRPETIQDALHRATNWINAEEE--RAFLAK 311
Query: 393 GGAAINLMPRFMMKRLGKTETDLI-PHDMVLSDYEGKTSTSMGAIMLNITAGTVSRSTLF 451
+A N P+ K T+L P + +TS S+G ++L +TA V + F
Sbjct: 312 KFSASNAAPKAPQPATTKKPTELRKPAAGTCTTMLCETSMSLGTVVLPVTAQGVVKMVEF 371
Query: 452 IVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDGVVENVQAD 498
V A YN++LG W++ + VPST HQ + P G + + +
Sbjct: 372 TVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKMTGISTE 418
>At2g10780 pseudogene
Length = 1611
Score = 226 bits (577), Expect = 6e-59
Identities = 163/584 (27%), Positives = 287/584 (48%), Gaps = 43/584 (7%)
Query: 438 LNITAGTVSRSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDGVVENVQA 497
+++ V+ I+VP K ++++LG +W+ A RI + +G+++
Sbjct: 524 ISVVVNGVNMPADLIIVPLK-KHDVILGMDWLGKYKAHIDCHRGRIQFERDEGMLK---- 578
Query: 498 DQSYYLAEAGYVDKKNFEKSPLVDATKMEAQDPLEKVDLGDGSKKRPTYISSLIDPELRG 557
+ + S ++ A + E LG G + Y++++ E+
Sbjct: 579 ----------FQGIRTTSGSLVISAIQAERM-------LGKGCE---AYLATITTKEVGA 618
Query: 558 ----RMIELLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKI 613
+ I ++ EF D FA + P S + ++ + P R P + K+
Sbjct: 619 SAELKDIPIVNEFSDVFAAVSGVPPDRSDPFT---IELEPGTTPISKAPYRMAPAEMAKL 675
Query: 614 KEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEM 673
K+++E LL FIR + W A V+ V KK+G R+CID+R LN T K++Y +P +
Sbjct: 676 KKQLEELLDKGFIRPSSS-PWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDE 734
Query: 674 MVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATY 733
++D G ++ S +D SGY+QI I DV KTAFR +E+VVMPFGL NA A +
Sbjct: 735 LMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTR--YDHFEFVVMPFGLTNAPAAF 792
Query: 734 QRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGV 793
++MN +F DF++ F+ ++I+D++V S S + H HLR ER+R H L KC+F
Sbjct: 793 MKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQ 852
Query: 794 IAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKP 853
+ FLG V+ +G+ ++ K ++I + P + +++S LG + RRF+ + + +P
Sbjct: 853 RSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQP 912
Query: 854 FSSLLRLKREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSML 913
+ L ++ F W +K+F ELK L PV++ P +G+P +Y A+ +G +L
Sbjct: 913 LTRL--TGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVL 970
Query: 914 AQEDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDI 973
Q+ + Y SR L + Y + + F + Y+ V +++
Sbjct: 971 MQKGS-----VIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKS 1025
Query: 974 IKHMLSKPILHSRIGKWSLALTEYSLTYAPLKTIKGQAVADFLA 1017
+K++ ++P L+ R +W + +Y+L A K VAD L+
Sbjct: 1026 LKYIFTQPELNLRQRRWMELVADYNLDIA-YHPGKANQVADALS 1068
Score = 81.6 bits (200), Expect = 3e-15
Identities = 79/335 (23%), Positives = 138/335 (40%), Gaps = 19/335 (5%)
Query: 1252 AHGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSI 1311
AH H KM L R +W + KD + C CQ VP+ L ++
Sbjct: 1167 AHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNL 1225
Query: 1312 -IKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAIPLQSVT-QETVIEFIQN 1369
I W + +D + + + +H + V +D K + + E + E +
Sbjct: 1226 PIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYID 1285
Query: 1370 HIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISL 1429
IV G+P S+ +D+ T F + AF ++ G ++ S Y+ Q + Q E + L +
Sbjct: 1286 EIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDM 1345
Query: 1430 IKKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEAVLPAEVYLQSFRIQRQ 1489
++ V +W + L V +AY NS + + G +P+ YG+ P R
Sbjct: 1346 LRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGER---- 1401
Query: 1490 EDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAY-NKKVKNRSFVTGDYVWKV 1548
++ ++DE ER+ L + ++ K+Y NK+ K F GD V+
Sbjct: 1402 -----RLFGPTIVDETT----ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLK 1452
Query: 1549 ILPTDKKDR--AYGKWAPNWEGPFKVKKVLSNNAY 1581
+ R + K +P + GP+KV + + AY
Sbjct: 1453 AMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAY 1487
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 219 bits (557), Expect = 1e-56
Identities = 164/561 (29%), Positives = 272/561 (48%), Gaps = 40/561 (7%)
Query: 460 YNLLLGREWIHGVGAVPSTLHQRISIWKPDG--VVENVQADQSYYLAEAGYVDKKNFEKS 517
Y+++LG +W+ R+S +P+G V + V+ + A KK EK
Sbjct: 403 YDVILGMDWLDHYRVHLDCHRGRVSFERPEGRLVYQGVRPTSGSLVISAVQA-KKMIEKG 461
Query: 518 PLVDATKMEAQDPLEKVDLGDGSKKRPTYISSLIDPELRGRMIELLKEFKDCFA*DNDEM 577
+ + L +V + D I +++EF+D F +
Sbjct: 462 CEAYLVTISMPESLGQVAVSD---------------------IRVIQEFEDVFQ-SLQGL 499
Query: 578 PGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWLAN 637
P D ++L + + P R P + ++K+++E LL FIR + W A
Sbjct: 500 PPSRSDPFTIEL--EPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTS-PWGAP 556
Query: 638 VVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIF 697
V+ V KK+G R+CID+R LN T K++Y +P + ++D G S +D SGY+QI
Sbjct: 557 VLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIP 616
Query: 698 IAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLV 757
IA+ DV KTAFR G +E+VVMPF L NA A + R+MN++F +F++ F+ ++IDD++
Sbjct: 617 IAEADVRKTAFRTR--YGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDIL 674
Query: 758 VKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 817
V S S +EH HLR+ E++R L KC+F FLG +V +G+ ++ K +A
Sbjct: 675 VYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEA 734
Query: 818 ILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLRLKREDI-FRWEA*HQKAF 876
I D PT+ +++S L + RRF+ + +P + +L +D+ F W ++ F
Sbjct: 735 IRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQP---MTKLTGKDVPFVWSPECEEGF 791
Query: 877 DELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQEDEDGIERAVFYLSRVLNDAK 936
LK L PV+ P G+P +Y A+ +G +L Q + + Y SR L +
Sbjct: 792 VSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRG-----KVIAYASRQLRKHE 846
Query: 937 TRYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDIIKHMLSKPILHSRIGKWSLALTE 996
Y + + F+ + Y+ V VF+ +K++ ++P L+ R +W + +
Sbjct: 847 GNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVAD 906
Query: 997 YSLTYAPLKTIKGQAVADFLA 1017
Y L A K VAD L+
Sbjct: 907 YDLEIA-YHPGKANVVADALS 926
Score = 63.2 bits (152), Expect = 1e-09
Identities = 75/347 (21%), Positives = 135/347 (38%), Gaps = 48/347 (13%)
Query: 1249 VSAAHGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASEL 1308
+S AH + H KM L R W + +D + C CQ VP
Sbjct: 1020 LSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAEHQVP---- 1074
Query: 1309 HSIIKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAIPLQSVTQETVIEFIQ 1368
D I I L++ ++ + + + ++ V E ++
Sbjct: 1075 --------------DAIWVIMDRLTKSAHFLAIR--------KTDGAAVLAKKYVSEIVK 1112
Query: 1369 NHIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILIS 1428
H G+P S+ +D+ + F AF G K+ S Y+ Q +GQ E + L
Sbjct: 1113 LH-----GVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLED 1167
Query: 1429 LIKKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEAVLPAEVYLQSFRIQR 1488
+++ V W + LS V +AY NS + + G PF YG+ P L+ +++
Sbjct: 1168 MLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTP----LRWTQVEE 1223
Query: 1489 QEDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAY-NKKVKNRSFVTGD--YV 1545
+ +Y + E ER+ L + ++ ++Y +K+ + F GD Y+
Sbjct: 1224 R-----SIYGADYVQETT----ERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYL 1274
Query: 1546 WKVILPTDKKDRAYGKWAPNWEGPFKVKKVLSNNAYVIKELSGQRQF 1592
+L + K +P + GPF++ + + AY ++ R F
Sbjct: 1275 KMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAF 1321
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 218 bits (555), Expect = 2e-56
Identities = 145/462 (31%), Positives = 243/462 (52%), Gaps = 19/462 (4%)
Query: 546 YISSLIDPELRGRM----IELLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLVK*L 601
Y+ ++ PE G++ I +++EF+D F +P D ++L + +
Sbjct: 439 YLVTISMPESVGQVAVSDIRVVQEFQDVFQ-SLQGLPPSQSDPFTIEL--EPGTAPLSKA 495
Query: 602 PRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAAT 661
P R P + ++K++++ LL FIR + W A V+ V KK+G R+CID+R+LN T
Sbjct: 496 PYRMAPAEMAELKKQLKDLLGKGFIRPSTS-PWGAPVLFVKKKDGSFRLCIDYRELNRVT 554
Query: 662 PKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVV 721
K+ Y +P + ++D G S +D SGY+QI IA+ DV KTAFR G +E+VV
Sbjct: 555 VKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTR--YGHFEFVV 612
Query: 722 MPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHG 781
MPFGL NA A + R+MN++F +F++ F+ ++IDD++V S S +E HLR+ E++R
Sbjct: 613 MPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQK 672
Query: 782 LKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLR 841
L KC+F FLG +V +G+ ++ K +AI D PT+ +++S LG + R
Sbjct: 673 LFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYR 732
Query: 842 RFIDNLSDKTKPFSSLLRLKREDI-FRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRL 900
RF+ + +P + +L +D+ F W ++ F LK L PV+ P G+P +
Sbjct: 733 RFVKGFASMAQP---MTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMV 789
Query: 901 YISATDETIGSMLAQEDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYI 960
Y A+ +G +L Q + + Y SR L + Y + + F+ + Y+
Sbjct: 790 YTDASRVGLGCVLMQHG-----KVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYL 844
Query: 961 KPIDVMVFSHFDIIKHMLSKPILHSRIGKWSLALTEYSLTYA 1002
V VF+ +K++ ++P L+ R +W + +Y L A
Sbjct: 845 YGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIA 886
>At4g03800
Length = 637
Score = 214 bits (546), Expect = 2e-55
Identities = 121/341 (35%), Positives = 193/341 (56%), Gaps = 25/341 (7%)
Query: 577 MPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWLA 636
MP + ++ +L + K +K R+ + + +I++LL+ IR +Y +W+A
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 637 NVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQI 696
V V KKNGK RVCIDF DLN A PKD + +P + +V+S AG+E L+ +D + GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 697 FIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDL 756
+ ED KT+F + + GATYQ ++N +F++ + M+V IDD
Sbjct: 441 MMNPEDQEKTSF-----------------ITDRGATYQWLVNKMFNEHLRKTMEVSIDDT 483
Query: 757 VVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAK 816
+VKS +++H+ HL + FE + + +K+N KC FGV +G+FLG++V K+GIE N N+
Sbjct: 484 LVKSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQIN 543
Query: 817 AILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLRLKREDIFRWEA*HQKAF 876
A L T + K++Q L G R +DK+ PF + LK + F W+ ++AF
Sbjct: 544 AFLKTPSLRNFKEVQRLTG------RIASRSTDKSLPFYQI--LKGNNGFLWDEKCEEAF 595
Query: 877 DELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQED 917
+LK YL PPV+ P + + LY+ ++ + +L +ED
Sbjct: 596 RQLKAYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
Score = 57.8 bits (138), Expect = 5e-08
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 348 EDLNIICIDDKAIFQRPSEHM-KSHLKPLFVWAKVEDKGVNKILVDGGAAINLMPRFMMK 406
E++N C + + + H+ + H L + V + +++ILVD G++++L+
Sbjct: 176 EEVNYQC-SSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLI------ 228
Query: 407 RLGKTETDLIPHDMVLSDYEGKTSTSMGAIMLNITAGTVSRSTLFIVVPSKANYNLLLGR 466
+ L + +++ S+G I L + AG +S+ F+V A YN++LG
Sbjct: 229 --------FLGPPSPLVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGT 280
Query: 467 EWIHGVGAVPSTLHQRISIWKPDGV 491
WI + AVPST HQ + +GV
Sbjct: 281 PWIFQMKAVPSTYHQWLKFPTSNGV 305
>At3g11970 hypothetical protein
Length = 1499
Score = 212 bits (539), Expect = 2e-54
Identities = 147/459 (32%), Positives = 240/459 (52%), Gaps = 18/459 (3%)
Query: 561 ELLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKEEIERL 620
E+L E+ D F + +P R+ ++ + E V P R+ +I + +E L
Sbjct: 567 EVLNEYPDIFI-EPTALPPF-REKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDL 624
Query: 621 LRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAG 680
L ++A+ + + VV V KK+G R+C+D+R+LN T KD + +P+ E ++D G
Sbjct: 625 LTNGTVQASSS-PYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 681 HEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTI 740
S +D +GY+Q+ + +D+ KTAF+ G +E++VMPFGL NA AT+Q +MN I
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHS--GHFEYLVMPFGLTNAPATFQGLMNFI 741
Query: 741 FHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLG 800
F F+ F+ V+ DD++V S S +EH HL++ FE MR + L KCAF V ++LG
Sbjct: 742 FKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLG 801
Query: 801 FVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLRL 860
+ +GIE + K KA+ + PT+ KQL+ LG + RRF+ + P L L
Sbjct: 802 HFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP---LHAL 858
Query: 861 KREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQEDEDG 920
+ D F W A Q+AF++LK L PV+ P+ K + A + IG++L QE
Sbjct: 859 TKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG--- 915
Query: 921 IERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDIIKHMLSK 980
+ Y+SR L + ++ EK L + F+ K ++Y+ ++ + +K++L +
Sbjct: 916 --HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQ 973
Query: 981 PILHSRIGKWSLALTE--YSLTYAPLKTIKGQAVADFLA 1017
+ +W L E Y + Y + K VAD L+
Sbjct: 974 RLNTPIQQQWLPKLLEFDYEIQY---RQGKENVVADALS 1009
Score = 73.9 bits (180), Expect = 7e-13
Identities = 75/332 (22%), Positives = 138/332 (40%), Gaps = 34/332 (10%)
Query: 1253 HGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSI- 1311
HG G H +G + + YW ++KD Y + C CQ+ L +
Sbjct: 1089 HGSGVGGH-SGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLP 1147
Query: 1312 IKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAIPLQS-VTQETVIEFIQNH 1370
I + ++D I + +S I+V +D K I L + TV ++
Sbjct: 1148 IPDTIWSEVSMDFIEGL--PVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDN 1205
Query: 1371 IVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISLI 1430
+ G P S+ +D+ +F F G+ L + Y+ Q++GQ E N+ L + +
Sbjct: 1206 VFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYL 1265
Query: 1431 KKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQE-----AVLPAE--VYLQS 1483
+ +P+ W + L+ + Y + ++ TPF + YGQ LP E V + +
Sbjct: 1266 RCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVA 1325
Query: 1484 FRIQRQEDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAYNKKVKNRSFVTGD 1543
+Q +ED+ + +++M R + R+ + ++ R F GD
Sbjct: 1326 RSLQEREDMLLFLKFHLM-------------------RAQHRMKQFADQHRTEREFEIGD 1366
Query: 1544 YVWKVILPTDKKD---RAYGKWAPNWEGPFKV 1572
YV+ + P ++ RA K +P + GP+K+
Sbjct: 1367 YVYVKLQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g36590 hypothetical protein
Length = 1499
Score = 212 bits (539), Expect = 2e-54
Identities = 147/459 (32%), Positives = 240/459 (52%), Gaps = 18/459 (3%)
Query: 561 ELLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKEEIERL 620
E+L E+ D F + +P R+ ++ + E V P R+ +I + +E L
Sbjct: 567 EVLNEYPDIFI-EPTALPPF-REKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDL 624
Query: 621 LRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAG 680
L ++A+ + + VV V KK+G R+C+D+R+LN T KD + +P+ E ++D G
Sbjct: 625 LTNGTVQASSS-PYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 681 HEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTI 740
S +D +GY+Q+ + +D+ KTAF+ G +E++VMPFGL NA AT+Q +MN I
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHS--GHFEYLVMPFGLTNAPATFQGLMNFI 741
Query: 741 FHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLG 800
F F+ F+ V+ DD++V S S +EH HL++ FE MR + L KCAF V ++LG
Sbjct: 742 FKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLG 801
Query: 801 FVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLRL 860
+ +GIE + K KA+ + PT+ KQL+ LG + RRF+ + P L L
Sbjct: 802 HFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP---LHAL 858
Query: 861 KREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQEDEDG 920
+ D F W A Q+AF++LK L PV+ P+ K + A + IG++L QE
Sbjct: 859 TKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG--- 915
Query: 921 IERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDIIKHMLSK 980
+ Y+SR L + ++ EK L + F+ K ++Y+ ++ + +K++L +
Sbjct: 916 --HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQ 973
Query: 981 PILHSRIGKWSLALTE--YSLTYAPLKTIKGQAVADFLA 1017
+ +W L E Y + Y + K VAD L+
Sbjct: 974 RLNTPIQQQWLPKLLEFDYEIQY---RQGKENVVADALS 1009
Score = 72.0 bits (175), Expect = 3e-12
Identities = 74/331 (22%), Positives = 139/331 (41%), Gaps = 38/331 (11%)
Query: 1254 GGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSI-I 1312
GG G ++K + + +GM +KD Y + C CQ+ L + I
Sbjct: 1094 GGHSGRDVTHQRVKGLFYSKGM-----IKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPI 1148
Query: 1313 KSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAIPLQS-VTQETVIEFIQNHI 1371
+ ++D I + +S I+V +D K I L + TV + +++
Sbjct: 1149 PDTIWSEVSMDFIEGL--PVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNV 1206
Query: 1372 VYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISLIK 1431
G P S+ +D+ +F F G+ L + Y+ Q++GQ E N+ L + ++
Sbjct: 1207 FKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLR 1266
Query: 1432 KHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQE-----AVLPAE--VYLQSF 1484
+P+ W + L+ + Y + ++ TPF + YGQ LP E V + +
Sbjct: 1267 CMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVAR 1326
Query: 1485 RIQRQEDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAYNKKVKNRSFVTGDY 1544
+Q +ED+ + +++M R + R+ + ++ R F GDY
Sbjct: 1327 SLQEREDMLLFLKFHLM-------------------RAQHRMKQFADQHRTEREFEIGDY 1367
Query: 1545 VWKVILPTDKKD---RAYGKWAPNWEGPFKV 1572
V+ + P ++ RA K +P + GP+K+
Sbjct: 1368 VYVKLQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 209 bits (531), Expect = 1e-53
Identities = 146/506 (28%), Positives = 253/506 (49%), Gaps = 42/506 (8%)
Query: 438 LNITAGTVSRSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDGVVENVQA 497
+++ V+ I+VP K ++++LG +W+ +RI + +G+++
Sbjct: 19 ISVVVNGVNMPADLIIVPLK-KHDVILGMDWLGKYKGHIDCHRERIQFERDEGMLK---- 73
Query: 498 DQSYYLAEAGYVDKKNFEKSPLVDATKMEAQDPLEKVDLGDGSKKRPTYISSLIDPELRG 557
+ + S ++ A + E LG G + Y++++ E+
Sbjct: 74 ----------FQGIRTTSGSLVISAIQAERM-------LGKGCE---AYLATITTKEVGA 113
Query: 558 ----RMIELLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKI 613
+ I ++ EF D FA + P S + ++ + P R P + ++
Sbjct: 114 SAELKDILIVNEFSDVFAAVSGVPPDRSDPFT---IELEPGTTPISKAPYRMAPAEMAEL 170
Query: 614 KEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEM 673
K+++E LL FIR + W A V+ V KK+G R+CID+R LN T K++Y +P +
Sbjct: 171 KKQLEELLAKGFIRPSSS-PWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDE 229
Query: 674 MVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATY 733
++D G ++ S +D SGY+QI I DV KTAFR G +E+VVMPFGL NA A +
Sbjct: 230 LMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTR--YGHFEFVVMPFGLTNAPAAF 287
Query: 734 QRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGV 793
++MN +F DF++ F+ ++IDD++V S S + H HLR ER+R H L K +F
Sbjct: 288 MKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQ 347
Query: 794 IAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKP 853
+ FLG V+ +G+ ++ K ++I + P + +++S LG + RRF+ + + +P
Sbjct: 348 RSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQP 407
Query: 854 FSSLLRLKREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSML 913
+ L ++ F W +K+F ELK L PV++ P +G+P +Y A+ +G +L
Sbjct: 408 LTRL--TGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVL 465
Query: 914 AQEDEDGIERAVFYLSRVLNDAKTRY 939
Q+ + Y SR L + Y
Sbjct: 466 MQKGS-----VIAYASRQLRKHEKNY 486
Score = 84.0 bits (206), Expect = 7e-16
Identities = 78/335 (23%), Positives = 139/335 (41%), Gaps = 19/335 (5%)
Query: 1252 AHGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSI 1311
AH H KM L R +W + KD + C CQ VP+ L ++
Sbjct: 559 AHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQLVKAEHQVPSGLLQNL 617
Query: 1312 -IKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAIPLQSVT-QETVIEFIQN 1369
I W + +D + + + +H + V +D K + + E + E +
Sbjct: 618 PISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYID 677
Query: 1370 HIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISL 1429
I+ G+P S+ +D+ T F + AF ++ G ++ S Y+ Q +GQ E + L +
Sbjct: 678 EIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDM 737
Query: 1430 IKKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEAVLPAEVYLQSFRIQRQ 1489
++ V +W + L + +AY NS + + G +P+ YG+ P R
Sbjct: 738 LRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGER---- 793
Query: 1490 EDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAY-NKKVKNRSFVTGDYVWKV 1548
++ ++DE ER+ L + ++ K+Y NK+ K F GD V+
Sbjct: 794 -----RLFGPTIVDETT----ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLK 844
Query: 1549 ILPTDKKDR--AYGKWAPNWEGPFKVKKVLSNNAY 1581
+ R + K +P + GP+KV + + AY
Sbjct: 845 AMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAY 879
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 207 bits (527), Expect = 4e-53
Identities = 149/480 (31%), Positives = 241/480 (50%), Gaps = 32/480 (6%)
Query: 543 RPTYISSLIDPELRGRMIE----LLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLV 598
RPT S +I +MIE EF+D F +P D ++L + +
Sbjct: 423 RPTSGSLVISAVQAEKMIEKGCEAYLEFEDVFQ-SLQGLPPSRSDPFTIEL--EPGTAPL 479
Query: 599 K*LPRRFHPDVLVKIKEEIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLN 658
P R P + ++K+++E LL A V+ V KK+G R+CID+R LN
Sbjct: 480 SKAPYRMAPAEMAELKKQLEDLLG-------------APVLFVKKKDGSFRLCIDYRGLN 526
Query: 659 AATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYE 718
T K++Y +P + ++D G S +D SGY+ I IA+ DV KTAFR G +E
Sbjct: 527 WVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFRTR--YGHFE 584
Query: 719 WVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMR 778
+VVMPFGL NA A + R+MN++F + ++ F+ ++IDD++V S S +EH HLR+ E++R
Sbjct: 585 FVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLR 644
Query: 779 IHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVN 838
L KC+F FLG +V +G+ ++ K +AI D PT+ +++S LG
Sbjct: 645 EQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAG 704
Query: 839 FLRRFIDNLSDKTKPFSSLLRLKREDI-FRWEA*HQKAFDELKNYLAIPPVMIPPIKGKP 897
+ RRF+ + +P + +L +D+ F W ++ F LK L PV+ P G+P
Sbjct: 705 YYRRFVKGFASMAQP---MTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEP 761
Query: 898 MRLYISATDETIGSMLAQEDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLK 957
+Y A+ +G +L Q + + Y SR L + Y + + F+ +
Sbjct: 762 YMVYTDASGVGLGCVLMQRG-----KVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWR 816
Query: 958 YYIKPIDVMVFSHFDIIKHMLSKPILHSRIGKWSLALTEYSLTYAPLKTIKGQAVADFLA 1017
Y+ +V VF+ +K++ ++P L+ R +W + +Y L A K VAD L+
Sbjct: 817 SYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIA-YHPGKANVVADALS 875
Score = 71.2 bits (173), Expect = 4e-12
Identities = 95/421 (22%), Positives = 161/421 (37%), Gaps = 38/421 (9%)
Query: 1188 NLTPNDWRKPIVEYLQNPVGSTDIKVKYRALNYTIIGNELFKKNVDG----TLLKCLSEV 1243
NL W + + +Y D+++ Y ++ + L K V ++ +SE+
Sbjct: 843 NLRQRQWMELVADY--------DLEIAYHPGKANVVADALSHKRVGAAPGQSVEALVSEI 894
Query: 1244 DAF--IAVSAAHGGLCGAHQAGAKMKWILFRQ------GMYWPTIMKDCIEYAKGCQDCQ 1295
A AV+ GL +A + L ++ Y +D + C CQ
Sbjct: 895 GALRLCAVAREPLGLEAVDRADLLTRVRLAQEKDEGLIAAYKAEGSEDVANWVAECDVCQ 954
Query: 1296 KHSGIQHVPASELHSI-IKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEAIP 1354
VP L S+ I W + ID + + +SR I V +D K +
Sbjct: 955 LVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWVIVDRLTKSAHFLA 1012
Query: 1355 LQSVTQETVI-EFIQNHIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYA 1413
++ V+ + + IV G+P S+ +D+ + F AF G K+ S Y+
Sbjct: 1013 IRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHP 1072
Query: 1414 QANGQVEAANKILISLIKKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEA 1473
Q GQ E + L +++ V W + LS V +AY NS + G PF Y +
Sbjct: 1073 QTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAPFEALYERPC 1132
Query: 1474 VLPAEVYLQSFRIQRQEDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAYNKK 1533
P + R D E + RVL L++ Q DR +K+
Sbjct: 1133 RTPLCLTQVGERSIYGADYVQE-----------TTERIRVLKLNMKEAQ-DRQRSYADKR 1180
Query: 1534 VKNRSFVTGD--YVWKVILPTDKKDRAYGKWAPNWEGPFKVKKVLSNNAYVIKELSGQRQ 1591
+ F GD Y+ +L + + K +P + GPF++ + + AY ++ R
Sbjct: 1181 RRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMRA 1240
Query: 1592 F 1592
F
Sbjct: 1241 F 1241
>At1g35370 hypothetical protein
Length = 1447
Score = 194 bits (493), Expect = 3e-49
Identities = 143/477 (29%), Positives = 241/477 (49%), Gaps = 33/477 (6%)
Query: 547 ISSLIDPELRGRMIE-LLKEFKDCFA*DNDEMPGLSRDLVELQLPIKEDKKLVK*LPRRF 605
IS+L + +++ +++EF D FA D P R+ + ++ + E V P R+
Sbjct: 531 ISALTSDVVEESVVQNIVEEFPDVFAEPTDLPP--FREKHDHKIKLLEGANPVNQRPYRY 588
Query: 606 HPDVLVKIKEEIERLLRCKFIRAAKYVE---WLANVVPVIKKNGKMRVCIDFRDLNAATP 662
+V K+EI+++++ V + + VV V KK+G R+C+D+ +LN T
Sbjct: 589 ----VVHQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTV 644
Query: 663 KDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVM 722
KD + +P+ E ++D G S +D +GY+Q+ + +D+ KTAF+ G +E++VM
Sbjct: 645 KDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHN--GHFEYLVM 702
Query: 723 PFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGL 782
FGL NA AT+Q +MN++F DF+ F+ V+ DD+++ S S +EH HLR FE MR+H L
Sbjct: 703 LFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKL 762
Query: 783 KMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRR 842
F + + LG + + IE + K +A+ + PT+ KQ++ LG + RR
Sbjct: 763 --------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRR 814
Query: 843 FIDNLSDKTKPFSSLLRLKREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYI 902
F+ N P L L + D F W Q AFD LK L PV+ P+ K +
Sbjct: 815 FVRNFGVIAGP---LHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVET 871
Query: 903 SATDETIGSMLAQEDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIKP 962
A + I ++L Q+ + Y+SR L + ++ EK L F+ K ++Y+ P
Sbjct: 872 DACGQGIRAVLMQKG-----HPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLP 926
Query: 963 IDVMVFSHFDIIKHMLSKPILHSRIGKWSLALTE--YSLTYAPLKTIKGQAVADFLA 1017
++ + +K++L + + +W L E Y + Y + K VAD L+
Sbjct: 927 SHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQY---RQGKENLVADALS 980
Score = 68.6 bits (166), Expect = 3e-11
Identities = 69/332 (20%), Positives = 139/332 (41%), Gaps = 40/332 (12%)
Query: 1254 GGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQDCQKHSGIQHVPASELHSIIK 1313
GG G + ++K + YW ++KD + + C CQ+ L +
Sbjct: 1065 GGRSGRDASHQRVKSLF-----YWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL-- 1117
Query: 1314 SWPFRGWAIDLIGEIHPAL--SRQHKYIIVAIDYFIKWVEAIPL-QSVTQETVIEFIQNH 1370
P + W D+ + L S I+V +D K + L + TV + ++
Sbjct: 1118 PIPDKIWC-DVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDN 1176
Query: 1371 IVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISLI 1430
+ G P S+ +D+ +F F + G++L S Y+ Q++GQ E N+ L + +
Sbjct: 1177 VYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYL 1236
Query: 1431 KKHVGRKPKSWHESLSQVLWAYRNSPREATGTTPFRLAYGQEAVL-------PAEVYLQS 1483
+ +P W++ L + Y + ++ TPF L YGQ + ++V + +
Sbjct: 1237 RCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVA 1296
Query: 1484 FRIQRQEDIPSEVYWNMMLDELVNLDEERVLALDVLTRQKDRIAKAYNKKVKNRSFVTGD 1543
+Q +E++ + +++M R + R+ + ++ R+F GD
Sbjct: 1297 RSLQERENMLLFLKFHLM-------------------RAQHRMKQFADQHRTERTFDIGD 1337
Query: 1544 YVWKVILPTDKKD---RAYGKWAPNWEGPFKV 1572
+V+ + P ++ R K +P + GP+K+
Sbjct: 1338 FVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKI 1369
>At2g06890 putative retroelement integrase
Length = 1215
Score = 190 bits (482), Expect = 7e-48
Identities = 182/645 (28%), Positives = 289/645 (44%), Gaps = 73/645 (11%)
Query: 386 VNKILVDGGAAINLMPRFMMKRLGKTETDLIPHDMVLSDYEGKTSTSMGAIMLNITAGTV 445
V +++DGG+ N+ M+K+LG L+D GK +++ I G
Sbjct: 244 VCSLIIDGGSCTNVASETMVKKLGLKW---------LND-SGKMRVK-NQVVVPIVIGKY 292
Query: 446 SRSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKPDGVV-------ENVQAD 498
L V+P +A + +LLGR W + R S G V D
Sbjct: 293 EDEILCDVLPMEAGH-ILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEVYQD 351
Query: 499 QSYYLAEAGYVDKKN--FEKSPLVDATKMEAQDPLEKVDLGDGSKKRPTYISSLIDPELR 556
Q + + V K+ F KS V + Q L V K+ T +++ P L
Sbjct: 352 QIHLKQKKEQVVKQPNFFAKSGEVKSAYSSKQPMLLFV-----FKEALTSLTNFA-PVLP 405
Query: 557 GRMIELLKEFKDCFA*DNDE-MPGLSRDLVELQLPIKEDKKLVK*LPRRFHPDVLVKIKE 615
M LL+++KD F DN + +P + +E Q+ L R +P V+ KE
Sbjct: 406 SEMTSLLQDYKDVFPEDNPKGLPPIRG--IEHQIDFVPGASLPNRPAYRTNP---VETKE 460
Query: 616 EIERLLRCKFIRAAKYVEWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMV 675
++R +K+G R+C D R +N T K + +P + M+
Sbjct: 461 -LQR-----------------------QKDGSWRMCFDCRAINNVTVKYCHPIPRLDDML 496
Query: 676 DSAAGHEYLSLLDGYSGYNQIFIAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQR 735
D G S +D SGY+QI + + D KTAF+ G YEW+VMPFGL +A +T+ R
Sbjct: 497 DELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKH--GLYEWLVMPFGLTHAPSTFMR 554
Query: 736 VMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIA 795
+MN + FI F+ VY DD++V S S EH+ HL +R L N KC F
Sbjct: 555 LMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDN 614
Query: 796 GDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFS 855
FLGFVV G+++++ K KAI D P + +++S G F RRF + S P +
Sbjct: 615 LVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLT 674
Query: 856 SLLRLKREDIFRWEA*HQKAFDELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQ 915
+ +K++ F+WE ++AF LK+ L PV+I K + A+ IG++L Q
Sbjct: 675 EV--MKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQ 732
Query: 916 EDEDGIERAVFYLSRVLNDAKTRYTMIEKLCLCLYFSCTKLKYYIKPIDVMVFSHFDIIK 975
+ ++ + + S L A Y +K L + + ++Y+ P ++ + + +K
Sbjct: 733 D-----QKLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLK 787
Query: 976 HMLSKPILHSRIGKWSLALTEYSLTYA---PLKTIKGQAVADFLA 1017
H+ + L+ R +W E+ T+A K K VAD L+
Sbjct: 788 HLKGQQKLNKRHARW----VEFIETFAYVIKYKKGKDNVVADALS 828
Score = 37.7 bits (86), Expect = 0.054
Identities = 33/125 (26%), Positives = 55/125 (43%), Gaps = 21/125 (16%)
Query: 1463 TPFRLAYGQEAVLPAEVYLQ--SFRIQRQEDIPSEVYWNMMLDELVNLDEERVLALDVLT 1520
+PF++ YG + P ++ S R+ +E+ + + N++E+ L
Sbjct: 988 SPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKL------ 1041
Query: 1521 RQKDRIAKAYNKKVKNRSFVTGDYVW----KVILPTDKKDRAYGKWAPNWEGPFKVKKVL 1576
AK NK + + F GD VW K P +K K P +GPFK+ K +
Sbjct: 1042 -----YAKQANKGRREQIFEVGDMVWIHLRKERFPAQRKS----KLMPRIDGPFKIIKRI 1092
Query: 1577 SNNAY 1581
++NAY
Sbjct: 1093 NDNAY 1097
>At2g13230 pseudogene
Length = 353
Score = 186 bits (472), Expect = 9e-47
Identities = 110/348 (31%), Positives = 179/348 (50%), Gaps = 29/348 (8%)
Query: 1133 FDQAGVSYIPRVSNQEANELAQIASGYMIDKQKLKELIRIKEKLSPLD-----LEVMVI- 1186
F + ++ IPR N A+ LA +AS ++ +++ + I++ LD + V+
Sbjct: 15 FHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPSIELDKVEHAFPIQVVA 74
Query: 1187 ------DNLTP----NDWRKPIVEYLQNPVGSTDI----KVKYRALNYTIIGNELFKKNV 1232
DN ++W +PI ++ D K+K A + ++ +LFK +
Sbjct: 75 GYEDASDNSPSLGCDSEWIEPIRNFISKRKVRLDKWEARKLKAEAARFVLVEEKLFKWRL 134
Query: 1233 DGTLLKCLSEVDAFIAVSAAHGGLCGAHQAGAKMKWILFRQGMYWPTIMKDCIEYAKGCQ 1292
G L+ C+ + A + HGG CG + G + + R G +WPT++KDC +
Sbjct: 135 SGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLGYFWPTMIKDC-------E 187
Query: 1293 DCQKHSGIQHVPASELHSIIKSWPFRGWAIDLIGEIHPALSRQHKYIIVAIDYFIKWVEA 1352
CQ+++ H+PA L SI +P W++D+IG +H S+Q K ++V DYF K EA
Sbjct: 188 KCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMHA--SKQKKLVLVLTDYFSKLREA 245
Query: 1353 IPLQSVTQETVIEFIQNHIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYY 1412
S+ + V F+ HI+ R G+P + TD G+ F+ + F + WGI+L S P Y
Sbjct: 246 ESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRY 305
Query: 1413 AQANGQVEAANKILISLIKKHVGRKPKSWHESLSQVLWAYRNSPREAT 1460
Q NGQ +AANK ++ +KK + K SW + L VLW++R +PR AT
Sbjct: 306 LQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSHRTTPRRAT 353
>At4g07600
Length = 630
Score = 167 bits (423), Expect = 5e-41
Identities = 107/307 (34%), Positives = 157/307 (50%), Gaps = 24/307 (7%)
Query: 638 VVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIF 697
++P+ G +R+CID+R+LNAA+ D + +P + M++ A H Y LDGYSG+ QI
Sbjct: 346 LIPIRTITG-LRMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIP 404
Query: 698 IAKEDVSKTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLV 757
I D KT F C GT+ + MPFGL NA AT+QR M +IF D IE ++V++DD
Sbjct: 405 IHPNDHEKTTFTCP--YGTFAYERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFS 462
Query: 758 VKSPSRDEHLSHLRKSFERMRIHGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 817
V PS L +L + R L +N KC F V G LG + +KGIE++K
Sbjct: 463 VYGPSFSSCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIMLGHKISEKGIEVDKG---- 518
Query: 818 ILDTSPPTSKKQLQSLLGKVNFLRRFIDNLSDKTKPFSSLLRLKREDIFRWEA*HQKAFD 877
LG F RRFI + S +P + L L +E F ++ K+F
Sbjct: 519 --------------CFLGHAGFYRRFIKDFSKIARPLTRL--LCKETEFEFDEDCPKSFH 562
Query: 878 ELKNYLAIPPVMIPPIKGKPMRLYISATDETIGSMLAQEDEDGIERAVFYLSRVLNDAKT 937
+K L PV+ P + A D +G++L Q+ + + ++Y SR L++A+
Sbjct: 563 TIKEALVSAPVVRATNWDYPFEIMCDALDYAVGAVLGQKIDKKL-HVIYYASRTLDEAQG 621
Query: 938 RYTMIEK 944
RY EK
Sbjct: 622 RYATTEK 628
Score = 32.3 bits (72), Expect = 2.3
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 387 NKILVDGGAAINLMPRFMMKRLGKTETDLIPHDMVLSDYEGKTSTS-MGAIMLNITAGTV 445
N+ L D GA ++ MP + KRLG T+ ++L+D + S + + + I A +
Sbjct: 81 NRCLCDLGALVSPMPLSIAKRLGFTQYKSCNISLILADRSVRISHGLLKNLPIRIGAAEI 140
Query: 446 SRSTLFIVVPSKANYNLLLGREWIHGVGAV 475
S + + + + L+L R ++ GA+
Sbjct: 141 STDFVILEMDEEPKDPLILRRPFLATAGAM 170
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,834,004
Number of Sequences: 26719
Number of extensions: 1488673
Number of successful extensions: 5447
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 5031
Number of HSP's gapped (non-prelim): 298
length of query: 1610
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1497
effective length of database: 8,299,349
effective search space: 12424125453
effective search space used: 12424125453
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0041.7