BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0039.6
         (578 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g24240 ubiquitin                                                   714  0.0
At2g46500 putative ubiquitin                                          684  0.0
At1g64460 unknown protein                                             412  e-115
At2g40850 putative protein                                            211  7e-55
At1g26270 unknown protein                                             209  3e-54
At3g56600 putative protein                                            208  6e-54
At1g13640 unknown protein                                             207  1e-53
At2g03890 unknown protein                                             207  1e-53
At1g64470 ubiquitin, putative                                         184  9e-47
At1g27570 hypothetical protein                                        102  4e-22
At3g09790 polyubiquitin                                                74  3e-13
At5g20620 polyubiquitin 4 UBQ4                                         71  1e-12
At5g03240 polyubiquitin (ubq3)                                         71  1e-12
At4g05320 polyubiquitin (ubq10)                                        71  1e-12
At4g05050                                                              70  2e-12
At4g02890 polyubiquitin                                                70  2e-12
At1g31340 putative ubiquitin (AtRUB1)                                  69  7e-12
At1g55060 ubiquitin-like (UBQ12)                                       67  2e-11
At5g37640 polyubiquitin 4                                              67  3e-11
At1g65350                                                              67  3e-11

>At5g24240 ubiquitin
          Length = 574

 Score =  714 bits (1843), Expect = 0.0
 Identities = 360/577 (62%), Positives = 447/577 (77%), Gaps = 11/577 (1%)

Query: 1   MACLALRPMHEEA--FGDFTSCFSHHLRDSILIYLTVGGSVVPMHIMETDSIASMKLRIQ 58
           +A +AL P  EE   F      F  +L D IL++LT+ GSV+P  +ME+DSIAS+KLRIQ
Sbjct: 3   VASVALSPALEELVNFPGIIGRFGFNLDDPILVFLTIAGSVIPKRVMESDSIASVKLRIQ 62

Query: 59  TFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFG 118
           + KGFFV+KQKL+++G+E++R+   +RDYG++DG +LHLV+RLSDLQAI+VRT  GKEF 
Sbjct: 63  SIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGKEFE 122

Query: 119 FYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
             V + RNVGYVKQQIA K + L    D EL  +GE L+DQRLI D+C++ D VIH L+ 
Sbjct: 123 LVVERSRNVGYVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCQNGDNVIHLLIS 182

Query: 179 TSDAKVTTKPVGKDFELSIEAYTVPSFSAGQLGSVSVTNRALKRNELTREFLLEPIVVNP 238
            S AKV  KPVGKDFE+ IE         G+ G      + +      +EF +EP +VNP
Sbjct: 183 KS-AKVRAKPVGKDFEVFIEDVNHKHNVDGRRG------KNISSEAKPKEFFVEPFIVNP 235

Query: 239 KIKIPQVIQELIKITSEGLEKGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAI 298
           +IK+P +++ELI  T EGLEKG  PI+SS+GSGGAY MQD  G KYVSVFKPIDEEPMA+
Sbjct: 236 EIKLPILLKELISSTLEGLEKGNGPIRSSDGSGGAYFMQDPSGHKYVSVFKPIDEEPMAV 295

Query: 299 NNPRGLPLSVDGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTV 358
           NNP G P+SVDGEG LKKGT+VG+GA+REVAAYILD+P  GPR++ + D+ GFAGVPPT 
Sbjct: 296 NNPHGQPVSVDGEG-LKKGTQVGEGAIREVAAYILDYPMTGPRTFPH-DQTGFAGVPPTT 353

Query: 359 MVKCLHKGFHHPEGYNSASDNVKLGSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRL 418
           MVKCLHK F+HP GY+ + +N K+GSLQMF+ N+GSCEDMG  VFPV++VHKISVLDIRL
Sbjct: 354 MVKCLHKDFNHPNGYSFSPENTKIGSLQMFVSNVGSCEDMGYRVFPVDQVHKISVLDIRL 413

Query: 419 ANADRHAGNILVAKDGENGSTVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTIEY 478
           ANADRHAGNILV++DG++G  VL PIDHGYC P  FEDCTF+WLYWPQAKEPYS +T+EY
Sbjct: 414 ANADRHAGNILVSRDGKDGQMVLTPIDHGYCFPNKFEDCTFEWLYWPQAKEPYSSETLEY 473

Query: 479 IKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLPPFTIGSIMCRETLKKK 538
           IKSLD E+DI+LL+FHGWE+PP C R+LRISTMLLKKG+ KGL PFTIGSIMCRETLK++
Sbjct: 474 IKSLDPEKDIELLRFHGWEIPPSCTRVLRISTMLLKKGSAKGLTPFTIGSIMCRETLKEE 533

Query: 539 SVIEQIIEEAEEGALPGTSEASFLDLVSVIMDSHLEE 575
           SVIEQII +AE      T+E  F+  VS IMD+ L++
Sbjct: 534 SVIEQIIHDAEAIVPTETTEDEFISTVSAIMDNRLDQ 570


>At2g46500 putative ubiquitin
          Length = 566

 Score =  684 bits (1765), Expect = 0.0
 Identities = 343/556 (61%), Positives = 433/556 (77%), Gaps = 19/556 (3%)

Query: 19  SCFSHHLRDSILIYLTVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELA 78
           SC   +  D+I+IYLT+ GSV+PM ++E+DSI S+KLRIQ+++GF VR QKLVF G+ELA
Sbjct: 25  SCLDSYPDDTIMIYLTLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELA 84

Query: 79  RDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKG 138
           R    +RDYGVS+GN+LHLVL+LSDLQ + V+T CGK   F+V + RN+GYVK+QI++K 
Sbjct: 85  RSNSNMRDYGVSEGNILHLVLKLSDLQVLDVKTTCGKHCRFHVERGRNIGYVKKQISKKR 144

Query: 139 QGLLDLADQELVWEGEALEDQRLIEDICKDNDAVIHFLVRTSDAKVTTKPVGKDFELSIE 198
              +D  +QE+++EGE LEDQ LI DIC+++D+V+H LVR S AKV  KPV K+FELSI 
Sbjct: 145 GDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLLVRRS-AKVRVKPVEKNFELSIV 203

Query: 199 AYTVPSFSAGQLGSVSVTNRALKRNELTREFLLEPIVVNPKIKIPQVIQELIKITSEGLE 258
           A         +  S+             ++  LEP+VVN K K+P V++++I+  S+GL+
Sbjct: 204 APQAKDKKGREAKSIVPP----------KKLSLEPVVVNSKAKVPLVVKDMIQSASDGLK 253

Query: 259 KGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAINNPRGLPLSVDGEGGLKKGT 318
            G  P++SSEG+GGAY MQ   G K+V VFKPIDEEPMA NNP+GLPLS +GEG LKKGT
Sbjct: 254 SGNSPVRSSEGTGGAYFMQGPSGNKFVGVFKPIDEEPMAENNPQGLPLSPNGEG-LKKGT 312

Query: 319 RVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLHKGFHHPEGYNSASD 378
           +VG+GALREVAAYILDHPK G +S    +E GFAGVPPT M++CLH GF+HP+G  +   
Sbjct: 313 KVGEGALREVAAYILDHPKSGNKSMFG-EEIGFAGVPPTAMIECLHPGFNHPKGIKT--- 368

Query: 379 NVKLGSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRLANADRHAGNILVAKDGENGS 438
             K+GSLQMF +N GSCEDMGP  FPVEEVHKISVLDIRLANADRH GNIL+ KD E+G 
Sbjct: 369 --KIGSLQMFTENDGSCEDMGPLSFPVEEVHKISVLDIRLANADRHGGNILMTKD-ESGK 425

Query: 439 TVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTIEYIKSLDAEEDIKLLKFHGWEL 498
            VL+PIDHGYCLPESFEDCTF+WLYWPQA++PYS +T EYI+SLDAEEDI LLKFHGW++
Sbjct: 426 LVLVPIDHGYCLPESFEDCTFEWLYWPQARKPYSAETQEYIRSLDAEEDIDLLKFHGWKM 485

Query: 499 PPECARLLRISTMLLKKGAEKGLPPFTIGSIMCRETLKKKSVIEQIIEEAEEGALPGTSE 558
           P E A+ LRISTMLLKKG E+GL  F IG+IMCRETL KKS++E+++EEA+E  LPGTSE
Sbjct: 486 PAETAQTLRISTMLLKKGVERGLTAFEIGTIMCRETLSKKSLVEEMVEEAQEAVLPGTSE 545

Query: 559 ASFLDLVSVIMDSHLE 574
           A+FL+ +S +MD HL+
Sbjct: 546 AAFLEALSDVMDYHLD 561


>At1g64460 unknown protein
          Length = 301

 Score =  412 bits (1059), Expect = e-115
 Identities = 201/301 (66%), Positives = 242/301 (79%), Gaps = 4/301 (1%)

Query: 276 MQDSLGLKYVSVFKPIDEEPMAINNPRGLPLSVDGEGGLKKGTRVGQGALREVAAYILDH 335
           MQDS GL YVSVFKP+DEEPMA+NNP+ LP+S DG+G LK+GTRVG+GA REVAAY+LDH
Sbjct: 1   MQDSSGLNYVSVFKPMDEEPMAVNNPQQLPVSSDGQG-LKRGTRVGEGATREVAAYLLDH 59

Query: 336 PKKGPRSYHNSDEKGFAGVPPTVMVKCLHKGFHHPEGYNS-ASDNVKLGSLQMFMKNIGS 394
           PK G RS  + +  GFAGVPPT MV+  HK +++P G++S A+ + K+GSLQMFMKN GS
Sbjct: 60  PKSGLRSV-SKEVMGFAGVPPTAMVRSSHKVYNYPNGFSSCATKDAKVGSLQMFMKNNGS 118

Query: 395 CEDMGPSVFPVEEVHKISVLDIRLANADRHAGNILVAKDGENGSTVLIPIDHGYCLPESF 454
           CED+GP  FPVEEVHKI V DIR+ANADRHAGNIL  K  E G T+LIPIDHGYCLPE+F
Sbjct: 119 CEDIGPGAFPVEEVHKICVFDIRMANADRHAGNILTGKS-EEGKTLLIPIDHGYCLPENF 177

Query: 455 EDCTFDWLYWPQAKEPYSPDTIEYIKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLK 514
           EDCTF+WLYWPQAK P+S DTI+YI SLD+E+DI LL+ HGW +P   +R LRISTMLLK
Sbjct: 178 EDCTFEWLYWPQAKLPFSADTIDYINSLDSEQDIALLQLHGWNVPEAVSRTLRISTMLLK 237

Query: 515 KGAEKGLPPFTIGSIMCRETLKKKSVIEQIIEEAEEGALPGTSEASFLDLVSVIMDSHLE 574
           KG E+ L P+ IGS+MCRET+ K S IE+I+ EA    LP +SEA+FL+ VSV MD  L+
Sbjct: 238 KGVERNLTPYQIGSVMCRETVNKDSAIEEIVREAHNSVLPASSEATFLEAVSVAMDRRLD 297

Query: 575 E 575
           E
Sbjct: 298 E 298


>At2g40850 putative protein
          Length = 561

 Score =  211 bits (538), Expect = 7e-55
 Identities = 122/324 (37%), Positives = 182/324 (55%), Gaps = 23/324 (7%)

Query: 246 IQELIKITSEGLEKGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAINNPRGLP 305
           ++ L+   +  +  G +P+    G GGAYL+Q   G   ++V KP+DEEP+A NNP+   
Sbjct: 107 VRALVAEVTMAMVSGAQPLLLPSGMGGAYLLQTGKGHN-IAVAKPVDEEPLAFNNPKKSG 165

Query: 306 LSVDGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLHK 365
             + G+ G+K    VG+  +RE+AAY+LD+             +GF+GVPPT +V   H 
Sbjct: 166 NLMLGQPGMKHSIPVGETGIRELAAYLLDY-------------QGFSGVPPTALVSISHV 212

Query: 366 GFHHPEGYNSASDNVKLGSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRLANADRHA 425
            FH  + ++ +S   K+ SLQ F+ +     ++GP  F    VH+I +LD+RL N DRHA
Sbjct: 213 PFHVSDAFSFSSMPYKVASLQRFVGHDFDAGELGPGSFTATSVHRIGILDVRLLNLDRHA 272

Query: 426 GNILVA----KDGEN--GSTVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTIEYI 479
           GN+LV     K+  N  G+  L+PIDHG CLPE  +D  F+WL WPQA  P+S   ++YI
Sbjct: 273 GNMLVKRCDKKEAYNRLGTAELVPIDHGLCLPECLDDPYFEWLNWPQALVPFSDTELDYI 332

Query: 480 KSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLPPFTIGSIMCRETLKKK- 538
            +LD  +D +LL+     LP    R+L + T+ LK+ A  GL    IG  M R+  K + 
Sbjct: 333 SNLDPFKDAELLRTELHSLPESAIRVLVVCTVFLKQAAAAGLCLAEIGEKMTRDFSKGEE 392

Query: 539 --SVIEQIIEEAEEGALPGTSEAS 560
             S++E +  +A+      TSE S
Sbjct: 393 SFSLLETLCTKAKASVFGKTSEDS 416


>At1g26270 unknown protein
          Length = 630

 Score =  209 bits (533), Expect = 3e-54
 Identities = 123/314 (39%), Positives = 180/314 (57%), Gaps = 25/314 (7%)

Query: 246 IQELIKITSEGLEKGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAINNPRGLP 305
           ++++ K  ++ ++KG  P+  + G GGAY  ++S G + V++ KP DEEP A NNP+G  
Sbjct: 148 VRQMAKDITKAVKKGIDPVAVNSGLGGAYYFKNSRG-ESVAIVKPTDEEPYAPNNPKGFV 206

Query: 306 LSVDGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLHK 365
               G+ GLK+  RVG+   REVAAY+LD             ++ FA VPPT +VK  H 
Sbjct: 207 GKALGQPGLKRSVRVGETGYREVAAYLLD-------------KEHFANVPPTALVKITHS 253

Query: 366 GFHHPEGYNSASDNVKL-----GSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRLAN 420
            F+  +G  ++    K+      SLQ F+ +     + G S FPV  VH+I +LDIR+ N
Sbjct: 254 IFNVNDGVKASKPMEKMLVSKIASLQQFIPHDYDASEHGTSNFPVSAVHRIGILDIRILN 313

Query: 421 ADRHAGNILVAK---DGENGSTVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTIE 477
            DRH+GN+LV K   DG  G   L+PIDHG CLPE+ ED  F+W++WPQA  P+S D ++
Sbjct: 314 TDRHSGNLLVKKLDGDGMFGQVELVPIDHGLCLPETLEDPYFEWIHWPQASIPFSEDELK 373

Query: 478 YIKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLPPFTIGSIMCRETL-- 535
           YI +LD   D ++L+     +     R+L + T+ LK+ A  GL    IG +M RE    
Sbjct: 374 YIANLDPLGDCEMLRRELPMVREASLRVLVLCTIFLKEAAANGLCLAEIGEMMTREVRPG 433

Query: 536 -KKKSVIEQIIEEA 548
            ++ S IE +  EA
Sbjct: 434 DEEPSEIEVVCLEA 447


>At3g56600 putative protein
          Length = 533

 Score =  208 bits (530), Expect = 6e-54
 Identities = 118/325 (36%), Positives = 181/325 (55%), Gaps = 29/325 (8%)

Query: 246 IQELIKITSEGLEKGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAINNPRGLP 305
           ++ L+   +  +  G +P+    G GGAYL+Q   G   ++V KP+DEEP+A NNP+G  
Sbjct: 87  VRSLVAEVTIAIVSGAQPLLLPSGLGGAYLLQTEKG-NNIAVAKPVDEEPLAFNNPKGSG 145

Query: 306 LSVDGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLHK 365
               G+ G+K+  RVG+  +RE+AAY+LDH             +GF+ VPPT +V+  H 
Sbjct: 146 GLTLGQPGMKRSIRVGESGIRELAAYLLDH-------------QGFSSVPPTALVRISHV 192

Query: 366 GFHHPEGYNSASDNVKLGSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRLANADRHA 425
            FH     ++A    K+ SLQ F+ +     ++GP  F V  VH+I +LD+R+ N DRHA
Sbjct: 193 PFHDRGSDHAA---YKVASLQRFVGHDFDAGELGPGSFTVVSVHRIGILDVRVLNLDRHA 249

Query: 426 GNILVAKDGEN---------GSTVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTI 476
           GN+LV K  +          G+  L+PIDHG CLPE  +D  F+WL WPQA  P++   +
Sbjct: 250 GNMLVKKIHDQDETTCSNGVGAAELVPIDHGLCLPECLDDPYFEWLNWPQASVPFTDIEL 309

Query: 477 EYIKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLPPFTIGSIMCRETLK 536
           +YI +LD  +D +LL+     +     R+L + T+ LK+ A  GL    IG  M R+  +
Sbjct: 310 QYISNLDPFKDAELLRTELDSIQESSLRVLIVCTIFLKEAAAAGLSLAEIGEKMTRDICR 369

Query: 537 ---KKSVIEQIIEEAEEGALPGTSE 558
                SV+E +  +A+  A+ G+ +
Sbjct: 370 GEESSSVLEILCNKAKASAVSGSDD 394


>At1g13640 unknown protein
          Length = 622

 Score =  207 bits (528), Expect = 1e-53
 Identities = 121/306 (39%), Positives = 168/306 (54%), Gaps = 30/306 (9%)

Query: 240 IKIPQVIQELIKITSEGLEKGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAIN 299
           + + Q   +++K    G+E    PI  + G GGAY  +D  G + V++ KP DEEP A N
Sbjct: 142 LSLKQTANDIVKAMKMGVE----PIPVNGGLGGAYYFRDEKG-QSVAIVKPTDEEPFAPN 196

Query: 300 NPRGLPLSVDGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVM 359
           NP+G      G+ GLK   RVG+   REVAAY+LD+               FA VPPT +
Sbjct: 197 NPKGFVGKALGQPGLKPSVRVGETGFREVAAYLLDYDH-------------FANVPPTAL 243

Query: 360 VKCLHKGFHHPEGYNSASD-------NVKLGSLQMFMKNIGSCEDMGPSVFPVEEVHKIS 412
           VK  H  F+  +G +           + K+ S Q F+ +     D G S FPV  VH+I 
Sbjct: 244 VKITHSVFNVNDGMDGNKSREKKKLVSSKIASFQKFVPHDFDASDHGTSSFPVASVHRIG 303

Query: 413 VLDIRLANADRHAGNILVAK-----DGENGSTVLIPIDHGYCLPESFEDCTFDWLYWPQA 467
           +LDIR+ N DRH GN+LV K      G  G   LIPIDHG CLPE+ ED  F+W++WPQA
Sbjct: 304 ILDIRILNTDRHGGNLLVKKLDDGGVGRFGQVELIPIDHGLCLPETLEDPYFEWIHWPQA 363

Query: 468 KEPYSPDTIEYIKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLPPFTIG 527
             P+S + ++YI+SLD  +D ++L+     +   C R+L + T+ LK+ A  GL    IG
Sbjct: 364 SIPFSEEELDYIQSLDPVKDCEMLRRELPMIREACLRVLVLCTVFLKEAAVFGLCLAEIG 423

Query: 528 SIMCRE 533
            +M RE
Sbjct: 424 EMMTRE 429


>At2g03890 unknown protein
          Length = 650

 Score =  207 bits (527), Expect = 1e-53
 Identities = 117/297 (39%), Positives = 167/297 (55%), Gaps = 22/297 (7%)

Query: 245 VIQELIKITSEGLEKGGKPIQSSEGSGGAYLMQDSLGLKYVSVFKPIDEEPMAINNPRGL 304
           +++ ++K   + ++ G +P+    G GGAY  ++  G + V++ KP DEEP A NNP+G 
Sbjct: 151 IVKHMVKDIVKAMKMGVEPLPVHSGLGGAYYFRNKRG-ESVAIVKPTDEEPFAPNNPKGF 209

Query: 305 PLSVDGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLH 364
                G+ GLK   RVG+   REVAAY+LD+ +             FA VPPT +VK  H
Sbjct: 210 VGKALGQPGLKSSVRVGETGFREVAAYLLDYGR-------------FANVPPTALVKITH 256

Query: 365 KGFHHPEGYNSASDNVK-----LGSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRLA 419
             F+  +G        K     + S Q F+ +     D G S FPV  VH+I +LDIR+ 
Sbjct: 257 SVFNVNDGVKGNKPREKKLVSKIASFQKFVAHDFDASDHGTSSFPVTSVHRIGILDIRIF 316

Query: 420 NADRHAGNILVAK-DGEN--GSTVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTI 476
           N DRH GN+LV K DG    G   LIPIDHG CLPE+ ED  F+W++WPQA  P+S + +
Sbjct: 317 NTDRHGGNLLVKKLDGVGMFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASLPFSDEEV 376

Query: 477 EYIKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLPPFTIGSIMCRE 533
           +YI+SLD  +D  +L+     +   C R+L + T+ LK+ +  GL    IG +M RE
Sbjct: 377 DYIQSLDPVKDCDMLRRELPMIREACLRVLVLCTIFLKEASAYGLCLAEIGEMMTRE 433


>At1g64470 ubiquitin, putative
          Length = 213

 Score =  184 bits (468), Expect = 9e-47
 Identities = 95/184 (51%), Positives = 138/184 (74%), Gaps = 4/184 (2%)

Query: 1   MACLALRPMHEE---AFGDF-TSCFSHHLRDSILIYLTVGGSVVPMHIMETDSIASMKLR 56
           +A +AL P+H     A G F  S  +H+   S+L++L+V GS +PM I+E+DSIA +KLR
Sbjct: 3   VADVALSPIHRGSAFAVGGFGQSTTTHYSVKSVLVFLSVSGSTMPMLILESDSIAEVKLR 62

Query: 57  IQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGKE 116
           IQT  GF VR+QKLVF G+ELAR+   V+DYGV+ G+VLHLVL+L D   +TV T CGK 
Sbjct: 63  IQTCNGFRVRRQKLVFSGRELARNASRVKDYGVTGGSVLHLVLKLYDPLLVTVITTCGKV 122

Query: 117 FGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEGEALEDQRLIEDICKDNDAVIHFL 176
           F F+V ++RNVGY+K++I+++G+G  ++ DQE++++GE L+D R+I+ ICKD ++VIH L
Sbjct: 123 FQFHVDRRRNVGYLKKRISKEGKGFPEVDDQEILFKGEKLDDNRIIDGICKDGNSVIHLL 182

Query: 177 VRTS 180
           V+ S
Sbjct: 183 VKKS 186


>At1g27570 hypothetical protein
          Length = 649

 Score =  102 bits (255), Expect = 4e-22
 Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 24/215 (11%)

Query: 324 ALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLHKGFHHPEGYNSASDNVKLG 383
           A  E  AY+LDHP+ G RS  +    GF+ V   V V+C  K            + +K+G
Sbjct: 396 ARNEAIAYLLDHPEDGHRS-QSEQIYGFSRVRRAVWVRCRIK------------NQMKMG 442

Query: 384 SLQMFMKNIGSCEDMG------PSVFPVEEVHKISVLDIRLANADRHAGNILVAKDGENG 437
            L  F+++  + + +G      P     EE+HKI VLDIR  N DR+ GN+LV  +  NG
Sbjct: 443 VLIEFLESSVTVQSLGTVYSELPDDVGAEEIHKIVVLDIRFGNIDRNLGNLLVQAEPRNG 502

Query: 438 STV-LIPIDHGYCL---PESFEDCTFDWLYW-PQAKEPYSPDTIEYIKSLDAEEDIKLLK 492
           S   L+PIDH          +  C   W+ W  Q  + +S   + Y+ +LD + D++ L+
Sbjct: 503 SAAHLVPIDHELSFFNDAHPYITCGACWIKWLEQIDKDFSSQLVNYVAALDPDRDLEFLR 562

Query: 493 FHGWELPPECARLLRISTMLLKKGAEKGLPPFTIG 527
             GWE          +    LKK   +GL    IG
Sbjct: 563 HCGWEPNQRYIENFTVFATFLKKAVSQGLTALQIG 597


>At3g09790 polyubiquitin
          Length = 631

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 28  SILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRD 86
           +I IY  T+    + + +  +DSI ++K +IQ  +G  + +Q+L+F GK+L  D L + D
Sbjct: 2   TIQIYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQL-EDGLTLAD 60

Query: 87  YGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLAD 146
           Y +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G+L    
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDK-EGILP-RQ 118

Query: 147 QELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
           Q L++ G+ LED R + D     ++ +H ++R
Sbjct: 119 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 150



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 20/191 (10%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G   R+Q+L+F GK+L  D   
Sbjct: 75  LRGGMQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQL-EDGRT 133

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEF-----GFYVGKKRNVGYVKQQIA-RK 137
           + DY +   + LHLVLRL     I V T  GK F        V     +  VK +I  R+
Sbjct: 134 LADYNIQKESTLHLVLRLCGGMQIFVSTFSGKNFTSDTLTLKVESSDTIENVKAKIQDRE 193

Query: 138 GQGLLDLADQELVWEGEAL--EDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV----- 189
           G   L    Q L++ GE L  ED R + D    N + +   +R   D  +  K +     
Sbjct: 194 G---LRPDHQRLIFHGEELFTEDNRTLADYGIRNRSTLCLALRLRGDMYIFVKNLPYNSF 250

Query: 190 -GKDFELSIEA 199
            G++F L +E+
Sbjct: 251 TGENFILEVES 261



 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 12/173 (6%)

Query: 36  GGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVL 95
           GG ++ + ++ +D+I S+K +IQ   G    +Q L+F G +L +D   + DY + + + L
Sbjct: 401 GGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQL-QDGRTLGDYNIRNESTL 459

Query: 96  HLVLRLSDLQAITVR-------TECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQE 148
           HL   +     I V+       T   K     V     +  VK +I  K    + L  Q 
Sbjct: 460 HLFFHIRHGMQIFVKTFSFSGETPTCKTITLEVESSDTIDNVKVKIQHKVG--IPLDRQR 517

Query: 149 LVWEGEALEDQRLIEDICKDNDAVIH--FLVRTSDAKVTTKPVGKDFELSIEA 199
           L++ G  L   R + D      + IH  FL R           GK   L +E+
Sbjct: 518 LIFGGRVLVGSRTLLDYNIQKGSTIHQLFLQRGGMQIFIKTLTGKTIILEVES 570



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 42/68 (60%), Gaps = 1/68 (1%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+IA++K +IQ  +G    +Q L+F G++L  D + + DY +   +
Sbjct: 558 TLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQL-EDGVTLGDYDIHKKS 616

Query: 94  VLHLVLRL 101
            L+LVLRL
Sbjct: 617 TLYLVLRL 624



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 18  TSCFSHHLRDSILIYL------TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLV 71
           T C +  LR  + I++      +  G    + +  +D+I ++K ++Q  +   +   +L+
Sbjct: 227 TLCLALRLRGDMYIFVKNLPYNSFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLI 286

Query: 72  FEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVK 131
           F GK L   +  +  Y +  G+ L+LV R      I V+T   K     V     +  VK
Sbjct: 287 FAGKPLEGGR-TLAHYNIQKGSTLYLVTRFRCGMQIFVKTLTRKRINLEVESWDTIENVK 345

Query: 132 QQIARKGQGLLDLAD-QELVWEGEALEDQRLIEDICKDNDAVIHFLV 177
             +  K +G+    + Q L++ G+ L+D   + D     ++ +H ++
Sbjct: 346 AMVQDK-EGIQPQPNLQRLIFLGKELKDGCTLADYSIQKESTLHLVL 391


>At5g20620 polyubiquitin 4 UBQ4
          Length = 382

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 6/178 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 207

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 208 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 265

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
              Q L++ G+ LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 323



 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 6/178 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 131

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 189

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
              Q L++ G+ LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 247



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 48/155 (30%), Positives = 82/155 (51%), Gaps = 4/155 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 283

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 284 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 341

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
              Q L++ G+ LED R + D     ++ +H ++R
Sbjct: 342 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 5/168 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GK     V     +  VK +I  K +G +    Q L++ G
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
           + LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 171



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 2/78 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 359

Query: 84  VRDYGVSDGNVLHLVLRL 101
           + DY +   + LHLVLRL
Sbjct: 360 LADYNIQKESTLHLVLRL 377


>At5g03240 polyubiquitin (ubq3)
          Length = 306

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 6/178 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 131

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 189

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
              Q L++ G+ LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 247



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 48/155 (30%), Positives = 82/155 (51%), Gaps = 4/155 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 207

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 208 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 265

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
              Q L++ G+ LED R + D     ++ +H ++R
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 5/168 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GK     V     +  VK +I  K +G +    Q L++ G
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
           + LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 171



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 2/78 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 283

Query: 84  VRDYGVSDGNVLHLVLRL 101
           + DY +   + LHLVLRL
Sbjct: 284 LADYNIQKESTLHLVLRL 301


>At4g05320 polyubiquitin (ubq10)
          Length = 464

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 6/178 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 283

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 284 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 341

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
              Q L++ G+ LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 342 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 399



 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 6/178 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 207

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 208 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 265

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
              Q L++ G+ LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 323



 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 6/178 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 131

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 189

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
              Q L++ G+ LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 247



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 5/168 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GK     V     +  VK +I  K +G +    Q L++ G
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
           + LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 171



 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 359

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARK 137
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K
Sbjct: 360 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 413


>At4g05050
          Length = 229

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 48/155 (30%), Positives = 82/155 (51%), Gaps = 4/155 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 131

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 189

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
              Q L++ G+ LED R + D     ++ +H ++R
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 5/168 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GK     V     +  VK +I  K +G +    Q L++ G
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
           + LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 171



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 2/78 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 207

Query: 84  VRDYGVSDGNVLHLVLRL 101
           + DY +   + LHLVLRL
Sbjct: 208 LADYNIQKESTLHLVLRL 225


>At4g02890 polyubiquitin
          Length = 229

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 48/155 (30%), Positives = 82/155 (51%), Gaps = 4/155 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 131

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 189

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
              Q L++ G+ LED R + D     ++ +H ++R
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 5/168 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GK     V     +  VK +I  K +G +    Q L++ G
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
           + LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 171



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 2/78 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 207

Query: 84  VRDYGVSDGNVLHLVLRL 101
           + DY +   + LHLVLRL
Sbjct: 208 LADYNIQKESTLHLVLRL 225


>At1g31340 putative ubiquitin (AtRUB1)
          Length = 156

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 41/144 (28%), Positives = 78/144 (53%), Gaps = 3/144 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GKE    +     +  +K+++  K +G+  +  Q L++ G
Sbjct: 66  TLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEK-EGIPPV-QQRLIYAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLV 177
           + L D +  +D   +  +V+H ++
Sbjct: 124 KQLADDKTAKDYNIEGGSVLHLVL 147



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 43/68 (62%), Gaps = 1/68 (1%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + I  TD+I  +K R++  +G    +Q+L++ GK+LA DK   +DY +  G+
Sbjct: 83  TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDK-TAKDYNIEGGS 141

Query: 94  VLHLVLRL 101
           VLHLVL L
Sbjct: 142 VLHLVLAL 149


>At1g55060 ubiquitin-like (UBQ12)
          Length = 230

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 83  TLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 141

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GK     V     +  VK +I  K +G +    Q L++ G
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-ISPDQQRLIFAG 199

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR 178
           +  ED R + D     ++ +H ++R
Sbjct: 200 KQHEDGRTLADYNIQKESTLHLVLR 224



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 47/168 (27%), Positives = 84/168 (49%), Gaps = 5/168 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G    + +  +D+I ++K +IQ  +G    + +L+F GK+L  D   + DY V + +
Sbjct: 7   TLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQL-EDGRTLADYNVQEDS 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHL+LR      I V+T  GK     V     +  +K +I  K +G +    Q L++ G
Sbjct: 66  TLHLLLRFRGGMQIFVKTLTGKTITLEVESSDTIDNLKAKIQDK-EG-IPPDQQRLIFAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
           + LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 171



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+   D   
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQ-HEDGRT 207

Query: 84  VRDYGVSDGNVLHLVLRL 101
           + DY +   + LHLVLRL
Sbjct: 208 LADYNIQKESTLHLVLRL 225


>At5g37640 polyubiquitin 4
          Length = 322

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 48/155 (30%), Positives = 80/155 (50%), Gaps = 4/155 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 75  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQL-DDGRT 133

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I VRT   K     V        VK +I  K +G + 
Sbjct: 134 LADYNIQKESTLHLVLRLRGGMQIFVRTLTRKTIALEVESSDTTDNVKAKIQDK-EG-IP 191

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
              Q L++ G+ LED R + D     ++ +H ++R
Sbjct: 192 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 226



 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 42/145 (28%), Positives = 74/145 (50%), Gaps = 3/145 (2%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+    + + ++ +D+I ++K +IQ  +G  + +Q+L+F GK L  D   + DY +   +
Sbjct: 9   TLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGK-LLDDGRTLADYSIQKDS 67

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
           +LHL LRL     I V+T  GK     V     +  VK +I  K     D   Q L++ G
Sbjct: 68  ILHLALRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPD--QQRLIFAG 125

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR 178
           + L+D R + D     ++ +H ++R
Sbjct: 126 KQLDDGRTLADYNIQKESTLHLVLR 150



 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 45/156 (28%), Positives = 77/156 (48%), Gaps = 5/156 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+    + + +  +D+  ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 151 LRGGMQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 209

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V T  GK     V     +  VK +I  K +  + 
Sbjct: 210 LADYNIQKESTLHLVLRLCGGMQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKER--IQ 267

Query: 144 LADQELVWEGEALED-QRLIEDICKDNDAVIHFLVR 178
              Q L++ GE LED    + D     ++ +H ++R
Sbjct: 268 PDQQRLIFAGEQLEDGYYTLADYNIQKESTLHLVLR 303



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 39/68 (56%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +     +Q+L+F G++L      + DY +   +
Sbjct: 237 TLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADYNIQKES 296

Query: 94  VLHLVLRL 101
            LHLVLRL
Sbjct: 297 TLHLVLRL 304


>At1g65350 
          Length = 294

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 6/168 (3%)

Query: 34  TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
           T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65

Query: 94  VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
            LHLVLRL     I V+T  GK     V     +  VK +I  K +G +    Q L++ G
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 123

Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
           + LED R + D  +  ++ +H ++R     ++  K + GK   L +E+
Sbjct: 124 KQLEDGRTLADNIQ-KESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 170



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 51/178 (28%), Positives = 89/178 (49%), Gaps = 7/178 (3%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +G    +Q+L+F GK+L  D   
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 131

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + D  +   + LHLVLRL     I V+T  GK     V     +  VK +I  K    + 
Sbjct: 132 LAD-NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK--EWIP 188

Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
              Q L++ G+ LED R + D     ++ +H ++R     ++  K + GK   L +E+
Sbjct: 189 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 246



 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 42/134 (31%), Positives = 70/134 (51%), Gaps = 4/134 (2%)

Query: 25  LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
           LR  + I++ T+ G  + + +  +D+I ++K +IQ  +     +Q+L+F GK+L  D   
Sbjct: 148 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQL-EDGRT 206

Query: 84  VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
           + DY +   + LHLVLRL     I V+T  GK     V     +  VK +I  K +G + 
Sbjct: 207 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSGTIDNVKAKIQDK-EG-IP 264

Query: 144 LADQELVWEGEALE 157
              Q L++ G+ LE
Sbjct: 265 PDQQRLIFAGKQLE 278


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,542,466
Number of Sequences: 26719
Number of extensions: 616626
Number of successful extensions: 1546
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 80
length of query: 578
length of database: 11,318,596
effective HSP length: 105
effective length of query: 473
effective length of database: 8,513,101
effective search space: 4026696773
effective search space used: 4026696773
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)