BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0037a.10
         (168 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g18990 unknown protein                                              37  0.005
At4g01580 hypothetical protein                                         33  0.095
At3g18960 unknown protein                                              30  0.61
At2g05570 Mutator-like transposase                                     26  8.9
At1g18590 unknown protein                                              26  8.9

>At3g18990 unknown protein
          Length = 341

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 4   VSRKFAVEFAHDLGLQWKLVDPFGSVHLVSYESNSEEPYLFEGLLEIRKFYSLQGMNWFL 63
           V  KF  +F  +L +   L  P G V  V       + +  +G  E    YS++     +
Sbjct: 22  VPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLI 81

Query: 64  LKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSH 102
            +Y+G S F ++I+N S  E+ Y +  L  S     H+H
Sbjct: 82  FRYEGNSAFSVYIFNLSHSEINYHSTGLMDS----AHNH 116


>At4g01580 hypothetical protein
          Length = 190

 Score = 32.7 bits (73), Expect = 0.095
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 22  LVDPFGSVHLVSYESNSEEPYLFEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSI 81
           LV P G    +  +   EE +  EG  E  + +S++  ++ L +Y+  S+F + I+N S 
Sbjct: 64  LVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASA 123

Query: 82  EEVCY 86
            E  Y
Sbjct: 124 CETNY 128


>At3g18960 unknown protein
          Length = 209

 Score = 30.0 bits (66), Expect = 0.61
 Identities = 18/65 (27%), Positives = 32/65 (48%)

Query: 22  LVDPFGSVHLVSYESNSEEPYLFEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSI 81
           L  P G    +  +   EE +  EG  E  + +S++  ++ L +Y+  S+F + I+N S 
Sbjct: 64  LETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSA 123

Query: 82  EEVCY 86
            E  Y
Sbjct: 124 CETKY 128


>At2g05570 Mutator-like transposase
          Length = 569

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 104 SFHGECTTGSKSVTEEWIFYPCFFTTRLSPNQVSSSQLVMNQFCY 148
           +F  + T    S T E +F  C F  R    Q  S Q +   FC+
Sbjct: 328 NFRADETQVEISTTGETLFVGCVFKNRKVLQQTMSLQAIKQCFCF 372


>At1g18590 unknown protein
          Length = 346

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 20 WKLVDPFGSVHLVSYESNSEEPYLFEGLLEIRKFYSLQGMNWFLLKY 66
          W+  DPF     V Y  +     L EGLL  +KF+  +  ++F+  Y
Sbjct: 46 WRPKDPF-----VEYGGHWWLQPLLEGLLHAQKFFKARPNDFFVCSY 87


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,825,574
Number of Sequences: 26719
Number of extensions: 154792
Number of successful extensions: 332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 5
length of query: 168
length of database: 11,318,596
effective HSP length: 92
effective length of query: 76
effective length of database: 8,860,448
effective search space: 673394048
effective search space used: 673394048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)