BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0036c.6
         (70 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g09250 putative transcriptional co-activator (KIWI)                112  3e-26
At5g09240 transcriptional co-activator-like protein                    82  4e-17
At4g10920 unknown protein                                              71  1e-13
At5g17160 putative protein (fragment)                                  25  9.3

>At5g09250 putative transcriptional co-activator (KIWI)
          Length = 107

 Score =  112 bits (281), Expect = 3e-26
 Identities = 50/67 (74%), Positives = 60/67 (88%)

Query: 3   DSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEE 62
           D IVVC ISKNRRVSVRNW G+I +DIREFYVKDGK +PGKKGISL++DQWN LRNH E+
Sbjct: 39  DDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAED 98

Query: 63  IDKAVNE 69
           I+KA+++
Sbjct: 99  IEKALSD 105


>At5g09240 transcriptional co-activator-like protein
          Length = 110

 Score = 82.4 bits (202), Expect = 4e-17
 Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 2/69 (2%)

Query: 3   DSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMP--GKKGISLTMDQWNVLRNHI 60
           + I +C + KNRRV VRN  GRI + IR+F+VKDG  +P   K+GISL+++QWN LRNH 
Sbjct: 38  EDIFICNLDKNRRVFVRNCNGRIWIAIRQFFVKDGITLPCNSKQGISLSLEQWNDLRNHE 97

Query: 61  EEIDKAVNE 69
           E+IDKA++E
Sbjct: 98  EDIDKALSE 106


>At4g10920 unknown protein
          Length = 165

 Score = 70.9 bits (172), Expect = 1e-13
 Identities = 28/69 (40%), Positives = 49/69 (70%)

Query: 1   DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
           D   +++C +S  RRV+++ ++G+ +V IRE+Y KDGK++P  KGISLT +QW+  + ++
Sbjct: 92  DDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNM 151

Query: 61  EEIDKAVNE 69
             I+ AV +
Sbjct: 152 PAIENAVKK 160


>At5g17160 putative protein (fragment)
          Length = 327

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 36  DGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNE 69
           + K   GKK   +T+D+ N+    I +++K V E
Sbjct: 272 ESKGEEGKKKKKVTIDEENLKNTSIRQLEKMVKE 305


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,578,864
Number of Sequences: 26719
Number of extensions: 50072
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 11,318,596
effective HSP length: 46
effective length of query: 24
effective length of database: 10,089,522
effective search space: 242148528
effective search space used: 242148528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)