BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0036b.1
         (122 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g45390 receptor-like protein kinase                                 29  0.64
At1g64250 hypothetical protein                                         26  4.1
At3g56550 putative protein                                             26  5.4
At5g01330 pyruvate decarboxylase-like protein                          25  7.1
At1g32420 hypothetical protein                                         25  7.1
At5g43820 putative protein                                             25  9.2
At2g18750 putative calmodulin-binding protein                          25  9.2

>At3g45390 receptor-like protein kinase
          Length = 604

 Score = 28.9 bits (63), Expect = 0.64
 Identities = 14/26 (53%), Positives = 18/26 (68%)

Query: 96  LFRSLKIGELSKMPLFKKKKFSLSPL 121
           L +SL I ELS +PLF ++K   SPL
Sbjct: 271 LLKSLDISELSTVPLFTEQKRKRSPL 296


>At1g64250 hypothetical protein
          Length = 790

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 12/38 (31%), Positives = 21/38 (54%)

Query: 8   YEPNDSLRSDRFIVSLKDHSSTCNFSELLEILSRHVVA 45
           ++  + L+ D +IV L + S TC   +L +    HV+A
Sbjct: 651 FQVTEPLQEDEWIVQLSEWSCTCGEFQLKKFPCLHVLA 688


>At3g56550 putative protein
          Length = 581

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 3/41 (7%)

Query: 7   WYEPNDSLRSDRFIVSLKDH-SSTCNFSELLEILSRHVVAG 46
           W E  D +   +F+V  K H  S   +SEL E+++R ++AG
Sbjct: 450 WIEIGDQVH--KFVVDDKMHPESAVIYSELGEVINRAILAG 488


>At5g01330 pyruvate decarboxylase-like protein
          Length = 592

 Score = 25.4 bits (54), Expect = 7.1
 Identities = 14/43 (32%), Positives = 23/43 (52%)

Query: 28  STCNFSELLEILSRHVVAGIFYKGLNIVLCILILQKDKLIRTH 70
           ST   SE++E    ++ AG  +   + V   L+L+K+K I  H
Sbjct: 295 STLFCSEIVESADAYIFAGPIFNDYSSVGYSLLLKKEKAIIVH 337


>At1g32420 hypothetical protein
          Length = 302

 Score = 25.4 bits (54), Expect = 7.1
 Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 1/52 (1%)

Query: 7   WYEPNDSLRSDRFIVSLKDHSSTCNFSELLEILSRHVVAGIFYKG-LNIVLC 57
           +Y+  +   S  F+VS    S   N  +  +IL+ H    I Y+G L +++C
Sbjct: 233 YYQATNEYGSTYFLVSFDVRSEKFNHVKAPKILTDHPCTLINYQGKLGLIMC 284


>At5g43820 putative protein
          Length = 680

 Score = 25.0 bits (53), Expect = 9.2
 Identities = 17/67 (25%), Positives = 29/67 (42%), Gaps = 8/67 (11%)

Query: 31  NFSELLEILSRH--------VVAGIFYKGLNIVLCILILQKDKLIRTHTCTLLHQLMGKS 82
           ++S +L  L R         V+ G+  +G+N  L  L +  D  +R H      +L  +S
Sbjct: 153 SYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEES 212

Query: 83  KVFDANC 89
           + F   C
Sbjct: 213 ESFGVKC 219


>At2g18750 putative calmodulin-binding protein
          Length = 622

 Score = 25.0 bits (53), Expect = 9.2
 Identities = 11/37 (29%), Positives = 19/37 (50%)

Query: 16  SDRFIVSLKDHSSTCNFSELLEILSRHVVAGIFYKGL 52
           S+R   +L +HS TC  SE+L +       G+ +  +
Sbjct: 309 SNRMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNI 345


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,800,034
Number of Sequences: 26719
Number of extensions: 100293
Number of successful extensions: 291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 7
length of query: 122
length of database: 11,318,596
effective HSP length: 87
effective length of query: 35
effective length of database: 8,994,043
effective search space: 314791505
effective search space used: 314791505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)