BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0035.10
(150 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41550 disease resistance protein-like 28 1.9
At3g04970 unknown protein, contains TNFR/NGFR cysteine-rich region 27 3.2
At5g02920 putative protein 27 5.4
At4g34060 hypothetical protein 26 7.0
At3g28910 MYB family transcription factor (hsr1), putative 26 7.0
At3g04680 unknown protein 26 7.0
At1g19850 transcription factor monopteros (MP) 26 7.0
At5g28690 unknown protein 26 9.2
At5g01370 unknown protein 26 9.2
At4g38340 putative protein 26 9.2
At1g67900 unknown protein 26 9.2
>At5g41550 disease resistance protein-like
Length = 1085
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 12 KSGNHRPCCSYITLHMQRKLKKKKKNTTQHNDRDSS 47
K+ H C S+ T H L+KKK N T+ N R S
Sbjct: 1053 KTSKHTSCWSWFTKH---GLRKKKMNKTRANSRGIS 1085
>At3g04970 unknown protein, contains TNFR/NGFR cysteine-rich region
Length = 397
Score = 27.3 bits (59), Expect = 3.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 73 HQCGWMDGCMPTRNS 87
H CGWM+ C+ RN+
Sbjct: 188 HHCGWMNNCIGERNT 202
>At5g02920 putative protein
Length = 345
Score = 26.6 bits (57), Expect = 5.4
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 81 CMPTRNSYDTSGSLSHADTRATSAKATCLLSWFLLHQSLSRSLTYPQCKV 130
C + + TS SL + R+ S +C++SW L R L+ +C +
Sbjct: 136 CNKFPDFFYTSSSLKRVELRSASLTPSCIVSWTSL-----RDLSLTRCNL 180
>At4g34060 hypothetical protein
Length = 917
Score = 26.2 bits (56), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
Query: 16 HRPCCSYITLHMQRKLKKKKKNTTQHN---DRDSSELRDQVS 54
+ PCC I KK+KKN+ + + +S L+D +S
Sbjct: 80 YHPCCFVINNSQTTHKKKEKKNSKEKHGIKHSESEHLQDDIS 121
>At3g28910 MYB family transcription factor (hsr1), putative
Length = 323
Score = 26.2 bits (56), Expect = 7.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 2 WRLVPSLTRMKSGNHRPCCSYITLHMQRKLKKKKKNTTQHNDRDSSELRDQVSIHPSSSS 61
W + S ++ N +Y H+++KL K +++ Q DR S +S PSSSS
Sbjct: 89 WAAIASYLPQRTDNDIK--NYWNTHLKKKLNKVNQDSHQELDRSS------LSSSPSSSS 140
>At3g04680 unknown protein
Length = 444
Score = 26.2 bits (56), Expect = 7.0
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 13 SGNHRPCCSYITLHMQRKLKKKKKNTTQHNDRDSSELRDQVSIHPSSS--SFIITMLLGP 70
+ + P SYI +H +++ + ND +SS+ + + P+ S S + MLL
Sbjct: 94 TADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDSGKSTLTKMLLSW 153
Query: 71 SLHQCGW 77
+ Q GW
Sbjct: 154 AAKQ-GW 159
>At1g19850 transcription factor monopteros (MP)
Length = 902
Score = 26.2 bits (56), Expect = 7.0
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 37 NTTQHNDRDSSELRDQVSIHPSSS 60
N T H D+DS E+ Q+S+ P S
Sbjct: 112 NVTLHADKDSDEIYAQMSLQPVHS 135
>At5g28690 unknown protein
Length = 192
Score = 25.8 bits (55), Expect = 9.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 30 KLKKKKKNTTQHNDRDSSELRDQ 52
K+++KK+ + ND DS +L D+
Sbjct: 62 KIQEKKQKSVSENDNDSPDLTDE 84
>At5g01370 unknown protein
Length = 427
Score = 25.8 bits (55), Expect = 9.2
Identities = 16/43 (37%), Positives = 25/43 (57%)
Query: 29 RKLKKKKKNTTQHNDRDSSELRDQVSIHPSSSSFIITMLLGPS 71
RK+ KKKK+ +++ + ++R +S S SS T LLG S
Sbjct: 229 RKVAKKKKSENRNDVNGAKKVRWFLSPSKSKSSSEKTALLGES 271
>At4g38340 putative protein
Length = 767
Score = 25.8 bits (55), Expect = 9.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 TSAKATCLLSWFLLHQSLSRSLTYPQC 128
+S K T ++ +LLH SLS +TY C
Sbjct: 31 SSRKQTRIILSYLLHLSLSLHITYSLC 57
>At1g67900 unknown protein
Length = 631
Score = 25.8 bits (55), Expect = 9.2
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 24 TLHMQRKLKKKKKNTTQHNDRDSSE-----LRDQVSIHPS-----SSSFIITML 67
TL RK+ KKK+++ +D D+S L +S+ P+ S SF++ +L
Sbjct: 246 TLQRNRKVVKKKEDSDSDSDTDTSSKHRLLLESIISLLPAEKGAVSCSFLLKLL 299
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.128 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,416,284
Number of Sequences: 26719
Number of extensions: 126241
Number of successful extensions: 417
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 11
length of query: 150
length of database: 11,318,596
effective HSP length: 90
effective length of query: 60
effective length of database: 8,913,886
effective search space: 534833160
effective search space used: 534833160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0035.10