BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0032.10
(216 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22350 putative non-LTR retroelement reverse transcriptase 31 0.57
At2g31080 putative non-LTR retroelement reverse transcriptase 30 0.97
At1g47320 hypothetical protein 30 1.3
At2g26030 unknown protein 29 1.7
At1g17390 hypothetical protein 29 1.7
At4g08830 putative protein 29 2.2
At3g32110 non-LTR reverse transcriptase, putative 28 2.8
At2g27870 putative non-LTR retroelement reverse transcriptase 28 3.7
At1g79160 unknown protein 27 6.3
At1g26950 hypothetical protein 27 8.2
>At2g22350 putative non-LTR retroelement reverse transcriptase
Length = 321
Score = 30.8 bits (68), Expect = 0.57
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 70 GVLRDAMGQWIKGFSINMG 88
GVLRD G WI GF++N+G
Sbjct: 180 GVLRDHNGAWIGGFAVNIG 198
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 30.0 bits (66), Expect = 0.97
Identities = 10/22 (45%), Positives = 17/22 (76%)
Query: 70 GVLRDAMGQWIKGFSINMGSRA 91
G +R+ G+W+ GF++N+GS A
Sbjct: 1090 GAIRNGQGEWLGGFALNIGSCA 1111
>At1g47320 hypothetical protein
Length = 259
Score = 29.6 bits (65), Expect = 1.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 70 GVLRDAMGQWIKGFSINMGSR---------AYANYFLAQFTTVSTAVEIVIGLEI 115
GVL+D G+W GFS+N+G AY +LA + S+ +E+ + EI
Sbjct: 120 GVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLA-WERKSSHIELEVDSEI 173
>At2g26030 unknown protein
Length = 442
Score = 29.3 bits (64), Expect = 1.7
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 81 KGFSINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVIRL 130
KGF NM R + + + T+ + + + +G+E P+ ++ SL ++ L
Sbjct: 109 KGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHL 158
>At1g17390 hypothetical protein
Length = 322
Score = 29.3 bits (64), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (72%)
Query: 70 GVLRDAMGQWIKGFSINMG 88
GV+RD G W GFS+N+G
Sbjct: 131 GVVRDGDGNWCYGFSLNIG 149
>At4g08830 putative protein
Length = 947
Score = 28.9 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 70 GVLRDAMGQWIKGFSINMG 88
GVLRD +G W GF++++G
Sbjct: 868 GVLRDGIGHWCGGFALDIG 886
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 28.5 bits (62), Expect = 2.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 70 GVLRDAMGQWIKGFSINMG 88
GVLR++ G W GF++N+G
Sbjct: 1770 GVLRNSAGAWCGGFAVNIG 1788
>At2g27870 putative non-LTR retroelement reverse transcriptase
Length = 314
Score = 28.1 bits (61), Expect = 3.7
Identities = 11/19 (57%), Positives = 14/19 (72%)
Query: 70 GVLRDAMGQWIKGFSINMG 88
GVLRD G W GF++N+G
Sbjct: 173 GVLRDEEGAWRGGFALNIG 191
>At1g79160 unknown protein
Length = 239
Score = 27.3 bits (59), Expect = 6.3
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 171 NLQIPTPYSSRFTIRSGAVWKIGQFFIPDAKSTNCKVEEKNQTIIT 216
+LQ+PT Y R ++SG V+ Q + S+ ++ NQT+ T
Sbjct: 61 DLQVPTGYEKRLDLKSGKVYL--QRCNSTSSSSITNADQTNQTVPT 104
>At1g26950 hypothetical protein
Length = 158
Score = 26.9 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 56 ARLASVIGIYMRVVGVLRDAMGQWIKGFSINMG 88
AR + + R G LRD G W F++N+G
Sbjct: 3 ARTSQITHYNNRKRGALRDEYGDWRGSFALNLG 35
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,511,258
Number of Sequences: 26719
Number of extensions: 171030
Number of successful extensions: 349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 10
length of query: 216
length of database: 11,318,596
effective HSP length: 95
effective length of query: 121
effective length of database: 8,780,291
effective search space: 1062415211
effective search space used: 1062415211
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0032.10