BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0031.15
         (168 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g60335 putative protein                                            182  1e-46
At1g76150 unknown protein                                              34  0.042
At1g50760 hypothetical protein                                         27  4.0
At2g41700 ATP-binding cassette transporter ABCA1                       27  5.2
At3g57820 putative protein                                             27  6.8
At2g31670 unknown protein                                              26  8.9

>At5g60335 putative protein
          Length = 187

 Score =  182 bits (461), Expect = 1e-46
 Identities = 90/150 (60%), Positives = 116/150 (77%), Gaps = 1/150 (0%)

Query: 14  LSLRCFSSAATPQVLKPGDVLRKARAFTEEDVLHYSKVTHDLNPLHTDSAAAQNVGFEGP 73
           L LR FSS A+  +LK GDVLR+ R F+ ED+  Y++V+HD NPLH D  +A+  GFE  
Sbjct: 33  LVLRSFSSVASKTLLKVGDVLRETRVFSSEDIKAYAEVSHDWNPLHFDPESARKAGFENR 92

Query: 74  LVHGMLVASLFPHIISSHFPGAVYVSQSLNFKFPVYIGDQVIGEVQATNLRANKNRYLVK 133
           LVHGMLV+S+FP IIS+HFPGAVYVSQSL+F+ PVYIGD+++G VQA  LR  KN+Y+VK
Sbjct: 93  LVHGMLVSSMFPRIISAHFPGAVYVSQSLHFRSPVYIGDEILGLVQAIALRETKNKYIVK 152

Query: 134 FKTRCIKS-DELVAIEGEAVAMLPTLTVEQ 162
           F T+C K+ +ELV I+GEA A+LP L + Q
Sbjct: 153 FSTKCFKNHNELVVIDGEATAILPNLDMLQ 182


>At1g76150 unknown protein
          Length = 309

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 26/91 (28%), Positives = 43/91 (46%), Gaps = 6/91 (6%)

Query: 50  KVTHDLNPLHTDSAAAQNVGFEGPLVHGMLVASL-FPHIISSHFPGAVYVSQSLNFKF-- 106
           +++ D NPLH+D   A+  GF  P++HG+         II     G     ++++ +F  
Sbjct: 204 RLSGDYNPLHSDPEFAKLAGFPRPILHGLCTLGFAIKAIIKCVCKGDPTAVKTISGRFLT 263

Query: 107 PVYIGDQVIGEVQATNLRANKNRYLVKFKTR 137
            V+ G+ +I E+    LR     Y  K K R
Sbjct: 264 TVFPGETLITEMWLEGLRV---IYQTKVKER 291


>At1g50760 hypothetical protein
          Length = 649

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 5/52 (9%)

Query: 97  YVSQSLNFKFPVYIGDQVIGEVQATNLRANKNRYLVKFKTRCIKSDELVAIE 148
           Y     N+KFP +  ++ +      ++  + +  L+ F  RCIK  ELV IE
Sbjct: 312 YTRSVTNWKFPQFYPEKAM----CVHVSPSLDEELISF-ARCIKDSELVGIE 358


>At2g41700 ATP-binding cassette transporter ABCA1
          Length = 1884

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 15/44 (34%), Positives = 22/44 (49%), Gaps = 3/44 (6%)

Query: 68  VGFEGPLVHGMLVASLFPHIISSHFPGAVYVSQ---SLNFKFPV 108
           VG+   LV      S+  HI+  H P A  VS+    ++FK P+
Sbjct: 739 VGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPL 782


>At3g57820 putative protein
          Length = 89

 Score = 26.6 bits (57), Expect = 6.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 97  YVSQSLNFKFPVYIGDQVIGE-VQATNLRANKNRYLVKFKTRCIKSDELVA 146
           Y S +   K+   IGD++I + +        ++R  V+FK R  K+DEL A
Sbjct: 26  YPSFTFGLKWVYQIGDKIIRKRIHVLVEHVQQSRCAVEFKLRKKKNDELKA 76


>At2g31670 unknown protein
          Length = 263

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 11  LQSLSLRCFS--SAATPQVLKPGDVLRKARAFTEEDVLHYSKVTHDLNPLHTDSAAAQNV 68
           L+ L  R FS  S++TPQ      ++     F  +D    +K+T  +N L+  +   Q +
Sbjct: 28  LRLLPRRSFSVMSSSTPQ----SQIIEHIVLFKTKDDADSTKITSMINNLNALAYLDQVL 83

Query: 69  GFEGPLVHGMLVASLFPHIISSHF 92
                 +H +  A+ F H++ S +
Sbjct: 84  HISTSPLHRISSATAFTHVLHSRY 107


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,314,897
Number of Sequences: 26719
Number of extensions: 124055
Number of successful extensions: 287
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 6
length of query: 168
length of database: 11,318,596
effective HSP length: 92
effective length of query: 76
effective length of database: 8,860,448
effective search space: 673394048
effective search space used: 673394048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)