BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0030.2
         (82 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g27700 ribosomal protein S21 - like                                148  4e-37
At3g53890 40S ribosomal protein S21 homolog                           144  6e-36
At3g27450 40S ribosomal subunit protein S21, putative                 107  1e-24
At5g05430 putative protein                                             26  4.0
At2g27800 hypothetical protein                                         26  4.0
At4g19880 unknown protein                                              25  5.3
At5g66500 unknown protein                                              25  9.0

>At5g27700 ribosomal protein S21 - like
          Length = 85

 Score =  148 bits (374), Expect = 4e-37
 Identities = 66/82 (80%), Positives = 77/82 (93%)

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          MQNEEGQ+TELYIPRKCSATNRLIT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
          QGDADS +DRLWQKKK E KQ+
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQK 82


>At3g53890 40S ribosomal protein S21 homolog
          Length = 82

 Score =  144 bits (364), Expect = 6e-36
 Identities = 63/82 (76%), Positives = 76/82 (91%)

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          M+N+ GQ+TELYIPRKCSATNR+IT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
          QGDADS +DRLWQKKK E KQQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82


>At3g27450 40S ribosomal subunit protein S21, putative
          Length = 79

 Score =  107 bits (266), Expect = 1e-24
 Identities = 51/74 (68%), Positives = 61/74 (81%), Gaps = 4/74 (5%)

Query: 13 IPRKC----SATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAI 68
          IPR+     S TNR IT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RAQGDADS +
Sbjct: 6  IPRQSMHIRSTTNRFITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGV 65

Query: 69 DRLWQKKKAEIKQQ 82
          DRL QKKK E KQQ
Sbjct: 66 DRLRQKKKVEAKQQ 79


>At5g05430 putative protein
          Length = 158

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 9/41 (21%)

Query: 6  GQITELYIPRKCSATNRLITA---------KDHASVQINIG 37
          G+I E+YIP K   TN ++             ++S Q+N+G
Sbjct: 51 GEIWEIYIPLKFDETNTILNRFWWLLPPPFLSNSSAQVNVG 91


>At2g27800 hypothetical protein
          Length = 427

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 18/70 (25%), Positives = 27/70 (37%), Gaps = 6/70 (8%)

Query: 4   EEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGD 63
           E    T  Y+     A  R I A++  S     G +     YN   + +AL       G+
Sbjct: 306 EPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFAL------SGE 359

Query: 64  ADSAIDRLWQ 73
            D A+  LW+
Sbjct: 360 IDDAVKCLWE 369


>At4g19880 unknown protein
          Length = 239

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 39  LDESG--VYNGQFSTYALCGYIRAQGDADSAIDRLWQ 73
           +DE+   +YNG  +    CG+ + QG  + A++++++
Sbjct: 90  IDETNEWIYNGINNGVYRCGFAKKQGPYEEAVEQVYE 126


>At5g66500 unknown protein
          Length = 532

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 13/42 (30%), Positives = 18/42 (41%)

Query: 17  CSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYI 58
           CS  + L   K    V +  G + +S + NG    Y  CG I
Sbjct: 291 CSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQI 332


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,793,229
Number of Sequences: 26719
Number of extensions: 59862
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 7
length of query: 82
length of database: 11,318,596
effective HSP length: 58
effective length of query: 24
effective length of database: 9,768,894
effective search space: 234453456
effective search space used: 234453456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)