BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0027.9
(1611 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31080 putative non-LTR retroelement reverse transcriptase 369 e-102
At3g32110 non-LTR reverse transcriptase, putative 352 8e-97
At4g15590 reverse transcriptase like protein 306 8e-83
At2g07650 putative non-LTR retrolelement reverse transcriptase 289 8e-78
At2g17610 putative non-LTR retroelement reverse transcriptase 283 6e-76
At4g08830 putative protein 270 5e-72
At2g45230 putative non-LTR retroelement reverse transcriptase 270 7e-72
At2g17910 putative non-LTR retroelement reverse transcriptase 265 1e-70
At2g05200 putative non-LTR retroelement reverse transcriptase 263 5e-70
At1g47910 reverse transcriptase, putative 255 1e-67
At2g25550 putative non-LTR retroelement reverse transcriptase 246 8e-65
At2g31520 putative non-LTR retroelement reverse transcriptase 245 1e-64
At4g09710 RNA-directed DNA polymerase -like protein 244 4e-64
At3g45550 putative protein 244 4e-64
At2g16680 putative non-LTR retroelement reverse transcriptase 243 7e-64
At2g41580 putative non-LTR retroelement reverse transcriptase 242 1e-63
At1g24640 hypothetical protein 228 2e-59
At2g11240 pseudogene 211 3e-54
At4g10830 putative protein 209 1e-53
At1g25430 hypothetical protein 200 5e-51
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 369 bits (947), Expect = e-102
Identities = 191/515 (37%), Positives = 290/515 (56%), Gaps = 5/515 (0%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
TL+ G + + I ++ SM + W G ++SF P+RG+RQGDP+SPYLFVLC+ERL
Sbjct: 455 TLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERL 514
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
I+ + WK V G +SH+ FADD++LFAEASV Q +I +L FCEASG
Sbjct: 515 CHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASG 574
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QKVS KS++FFS NV I GI T LG YLG+P+L ++KE F ++++
Sbjct: 575 QKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLER 634
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V +L+GWK +LS AGR++LT++ L S+P +VM +P+ ++R R F+WGST
Sbjct: 635 VSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTM 694
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ +K HL+SW IC PK +GG+G R +N+A +AK+ W +L DK+SLW +V++ KYK
Sbjct: 695 EKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV 754
Query: 1400 NPGLRAPPL-PKPPDSPTWKGICKAW-PIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITS 1457
L P+P S TW+ + ++ KGV W G+G + FW D W+ P+
Sbjct: 755 GGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWL-LQEPLVE 813
Query: 1458 FMPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWG 1517
D+ E + +L WN L LP+ V RR+ ++ DE W
Sbjct: 814 LGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWK 873
Query: 1518 LSPDGAFSLNSVFLILLPP--PPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKER 1575
+ DGAF++ S + +L + F +W P R + +W + ++TN ER
Sbjct: 874 GTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVER 933
Query: 1576 VKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
V+R+++ ++ C C EE+++H +RDC ++ +W
Sbjct: 934 VRRHLSENAICSVCNGAEETILHVLRDCPAMEPIW 968
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 352 bits (904), Expect = 8e-97
Identities = 180/516 (34%), Positives = 289/516 (55%), Gaps = 5/516 (0%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
TL+ G +++ I C+ SM + W G +++F P RG+RQGDP+SPYLFVLCIERL
Sbjct: 1131 TLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERL 1190
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
I+ + + +WK K+ +SGP +SH+ FADD++LFAEAS+DQ ++ +L FC ASG
Sbjct: 1191 CHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASG 1250
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QKVS KS+++FSKNV +I G++ T +LG YLGVP+L ++KE F +I +
Sbjct: 1251 QKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKR 1310
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
+L+GWK LSFAGR++LT++ L S+ + M T +P ++++ R F+WGST
Sbjct: 1311 FSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTL 1370
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ +K HL++W +C P+ +GGLG +N+A +AK+ W +L D SLW QV+++KYK
Sbjct: 1371 EKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKV 1430
Query: 1400 -NPGLRAPPLPKPPDSPTWKGI-CKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITS 1457
+ R + K S TW+ + ++ + W +G+G ++ FW D W+ PI
Sbjct: 1431 GDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSET-PIAD 1489
Query: 1458 FMPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWG 1517
S A + + W+ + ++ + D+ + A+ + D WG
Sbjct: 1490 DSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWG 1549
Query: 1518 LSPDGAFSLNSVFLILL--PPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKER 1575
++ DG F++ S F +L P + VW + P R + LW + ++TN ER
Sbjct: 1550 MTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSER 1609
Query: 1576 VKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVWN 1611
+R++ C C ES++H +RDC + +W+
Sbjct: 1610 KRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWD 1645
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 306 bits (783), Expect = 8e-83
Identities = 176/492 (35%), Positives = 262/492 (52%), Gaps = 37/492 (7%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
TL+ G + +I+ I C++ M + W G ++SF P RG+RQGDPISPYLFVLCIERL
Sbjct: 407 TLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERL 466
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
I+ A G WK+ + + GP +SH+ FADD++LFAEASV
Sbjct: 467 CHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASV-----------------A 509
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QKVS KS++FFS NV I GI T LG YLG+P+L ++K+ F ++++
Sbjct: 510 QKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLER 569
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V +LSGWK +LS AGR++LT++ L+S+P + M + +P + ++++++ RNF+WGST
Sbjct: 570 VSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTV 629
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ RK HL+SW +C PK GGLG + +N+A +AK+ W +L DK SLW +VL+ KYK
Sbjct: 630 EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKV 689
Query: 1400 NPGLRAPPL-PKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSF 1458
+ L PK S TW+ I G G++ + WI + T
Sbjct: 690 TDVHDSSWLVPKATWSSTWRSI---------------GVGLREGVAK-GWILHEPLCTRA 733
Query: 1459 MPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGL 1518
+ E NA + + E W+ L Q LP V R+ A+ + D W
Sbjct: 734 TCLLSPEELNARVE-EFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRISWQG 792
Query: 1519 SPDGAFSLNSVFLILLPPPPVS--YEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERV 1576
+ DG F++ S +++L E F+ +W P R + LW ++TN ERV
Sbjct: 793 TSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAPERVRVFLWLVGQQVIMTNVERV 852
Query: 1577 KRNMTYDSTCPR 1588
+R++ C R
Sbjct: 853 RRHIGDIEVCQR 864
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 289 bits (740), Expect = 8e-78
Identities = 145/445 (32%), Positives = 245/445 (54%), Gaps = 9/445 (2%)
Query: 1172 WKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFF 1231
WK + + GP +SH+ FADD++LFAEASV Q +I +L FC ASGQKVS KS++FF
Sbjct: 189 WKPISLSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFF 248
Query: 1232 SKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVST 1291
S+NV I GI T LG YLG+P+L ++K+ F +++K+ +L+GWK
Sbjct: 249 SENVSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRF 308
Query: 1292 LSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKCHLISWDT 1351
LS AGRV+LT++ L S+P + M T +P ++++ R+F+WGS+ RK HLISW
Sbjct: 309 LSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKR 368
Query: 1352 ICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLRAPPLPKP 1411
+C P+ +GGLG + +N+A ++K+ W ++ D SLW ++++ Y+ +R K
Sbjct: 369 VCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQ-DVRDGAWTKV 427
Query: 1412 PD--SPTWKGICKAW-PIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHSEAWN 1468
S TW+ + ++ G+ W +G+G ++ FW D W+ N+ P+ + W
Sbjct: 428 RSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKWLTNI-PLAELLVQEPPAGWK 486
Query: 1469 ANLPVAAFLENG-DWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDGAFSLN 1527
+ NG W+ +++ + ++++ + D WG S DG F ++
Sbjct: 487 -GMRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVS 545
Query: 1528 SVFLILL--PPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDST 1585
+ + L P ++ F+ VW+ P R + LW A ++TN+ER +R+++ +
Sbjct: 546 TTYSFLTRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTI 605
Query: 1586 CPRCLEEEESVMHAIRDCECVKHVW 1610
C C +ES++H +RDC ++ +W
Sbjct: 606 CQVCKGAKESIIHVLRDCPAMEGIW 630
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 283 bits (724), Expect = 6e-76
Identities = 169/524 (32%), Positives = 262/524 (49%), Gaps = 18/524 (3%)
Query: 1099 ATLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIER 1158
A ++ GF +K+ I CI++++ I G P RG+RQGDPISPYL++LC E
Sbjct: 46 AIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEG 105
Query: 1159 LALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEAS 1218
L+ I+ + + FK R+GP+ISHLLFA D ++F +A++++ + + +L + +AS
Sbjct: 106 LSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKAS 165
Query: 1219 GQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLID 1278
GQ V+ KS + F K + ++Q+ LGI KT G YLG+P F+F+
Sbjct: 166 GQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQ 225
Query: 1279 KVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGST 1338
+ +K+ W LS AG+ L +S + ++P Y M +P+ + +I R F W +T
Sbjct: 226 TMDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNT 285
Query: 1339 ADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYK 1398
K ++W + PK GGL DL+ N A +AK +W IL SL +V KAKY
Sbjct: 286 KVKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKY- 344
Query: 1399 FNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSF 1458
F S WK I ++ +G+K+ GNG + W+DNW+P P
Sbjct: 345 FPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPP---- 400
Query: 1459 MPDVHS-EAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWG 1517
P V + ++ + L V+ L G WN + L +L+ + IRA+ P + D W
Sbjct: 401 RPPVGTCDSIYSQLKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIR-PSITGANDAITWI 459
Query: 1518 LSPDGAFSLNSVFLIL----------LPPP-PVSYEKTFEHVWNFRGPPRAQAVLWKTAH 1566
+ DG +S+ S + +L LP P VS + F ++W PP+ + W++AH
Sbjct: 460 YTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAH 519
Query: 1567 GRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L T +R + D TC RC E E V H + C K +W
Sbjct: 520 NALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIW 563
>At4g08830 putative protein
Length = 947
Score = 270 bits (690), Expect = 5e-72
Identities = 148/457 (32%), Positives = 239/457 (51%), Gaps = 43/457 (9%)
Query: 1157 ERLALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCE 1216
ERL I A + WK+ + + GP ISH+ FADD++LFAEASV Q +I IL FC
Sbjct: 326 ERLCHMIDRAVAVKEWKSIGLSQGGPKISHICFADDLILFAEASVSQIRVIRRILETFCI 385
Query: 1217 ASGQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFL 1276
ASGQKVS KS++FFSKNV I GI+ T LG YLG+P+L ++K+ F +
Sbjct: 386 ASGQKVSLDKSKIFFSKNVSRDLEKLISKESGIKSTRELGKYLGMPILQRRINKDTFGEV 445
Query: 1277 IDKVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWG 1336
+++V +L+GWK +LSFAGR++LT+S L +P + M T +P + +++L R F+ G
Sbjct: 446 LERVSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLG 505
Query: 1337 STADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAK 1396
S+A+ +K HL++WD +C PK +GGLG + +N+A ++K+ W ++ D+ SLW ++L++K
Sbjct: 506 SSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSK 565
Query: 1397 YKFNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPIT 1456
Y+ GLR ++ +G +W +GNG + FW DNW+ + I
Sbjct: 566 YRV--GLR--------------------EVVSRGSRWVVGNGRDILFWSDNWLSHEALIN 603
Query: 1457 SFMPDVHSEAWNANLPVAAFLENG-DWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPF 1515
+ ++ + L V NG W + + + + A+ + D
Sbjct: 604 RAVIEIPNS--EKELRVKDLWANGLGWKLDKIEPYISYHTRLELAAVVVDSVTGARDRLS 661
Query: 1516 WGLSPDGAFSLNSVFLILLP--PPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNK 1573
WG S DG F++ S + +L P + F+ +W R + LW
Sbjct: 662 WGYSADGVFTVKSAYRLLTEDHDPRPNMAAFFDRLWRVVALERVKTFLW----------- 710
Query: 1574 ERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
++ S C C +E+++H ++DC + +W
Sbjct: 711 -----HIGDTSVCQVCKGGDETILHVLKDCPSIAGIW 742
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 270 bits (689), Expect = 7e-72
Identities = 165/531 (31%), Positives = 259/531 (48%), Gaps = 36/531 (6%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF D +I LI C+ S + G PSRG+RQGDP+SPYLFV+C E L ++
Sbjct: 597 GFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQ 656
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A + KV R P ISHLLFADD + + + + + I I+ + ASGQ+V+
Sbjct: 657 SAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNY 716
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS ++F K++ + + + LGI++ G+YLG+P ++L D++ KK+
Sbjct: 717 LKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKV 776
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
GW+ + LS G+ L ++ ++LP Y M IP +CQ+IE + F W + + R
Sbjct: 777 LGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGL 836
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKY--KFNPG 1402
H +W + PK GGLGF ++ N A + K W ++ +KDSL +V K++Y K +P
Sbjct: 837 HWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDP- 895
Query: 1403 LRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDV 1462
L AP +P S WK I +A ++++G++ +GNG ++ W D WI P
Sbjct: 896 LNAPLGSRP--SFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWI-------GAKPAK 946
Query: 1463 HSEAWNANLPVAAFLENG-------------DWNWNSLSQLLPDDVCRRIRALNPPHLER 1509
++A + V+ + N DWNWN +S L PD+ I AL P E
Sbjct: 947 AAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKET 1006
Query: 1510 GEDEPFWGLSPDGAFSLNSVFLILLP-------PPPV---SYEKTFEHVWNFRGPPRAQA 1559
D W S G +S+ S + ++ P V S + F+ +W PP+
Sbjct: 1007 -RDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHH 1065
Query: 1560 VLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
LW+ + L R++ + +C RC E+V H + C + W
Sbjct: 1066 FLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTW 1116
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 265 bits (678), Expect = 1e-70
Identities = 162/518 (31%), Positives = 252/518 (48%), Gaps = 18/518 (3%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF++K+I I C++S S + G P+RG+RQGDP+SP LFVLC E L +
Sbjct: 575 GFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILN 634
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A G+ + S++HLLFADD +L +A+ + + + L + + SGQ ++
Sbjct: 635 KAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINL 694
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS + F KNV D I GI G YLG+P S ++ F F+ +K++ +L
Sbjct: 695 NKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRL 754
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
+GW TLS G+ L +S L+LP YVM +P +CQ++ + +F W S RK
Sbjct: 755 TGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKI 814
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H +SW + PKDQGG GF DL+ NQA +AK AW +L +K SL+++V +++Y N
Sbjct: 815 HWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFL 874
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHS 1464
+ P S W+ I ++ +G++ +GNG K W D W+ + ++ P
Sbjct: 875 SATRGSRP-SYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDG---SNRRPLNRR 930
Query: 1465 EAWNANLPVAAFLE--NGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDG 1522
N +L V+ ++ + +WN N L L P I P + ED W S +G
Sbjct: 931 RFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK--EDSFCWLHSHNG 988
Query: 1523 AFSLNSVFLILL----------PPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTN 1572
+S+ + + L S F+ +WN P+ + LWK HG +
Sbjct: 989 LYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVE 1048
Query: 1573 KERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
R + D C C E E++ H + +C + VW
Sbjct: 1049 DRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVW 1086
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 263 bits (673), Expect = 5e-70
Identities = 158/517 (30%), Positives = 258/517 (49%), Gaps = 16/517 (3%)
Query: 1101 LQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLA 1160
LQ FGF +I+ + C++S S G P+RG+RQGDP+SP LF+LC E L+
Sbjct: 488 LQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLS 547
Query: 1161 LTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQ 1220
A + +V +GP ++HLLFADD + F+++ + + EIL + +ASGQ
Sbjct: 548 GLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQ 607
Query: 1221 KVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKV 1280
++ KS V FS Q+ L I+K G YLG+P ++ F +IDK+
Sbjct: 608 SINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKI 667
Query: 1281 RKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTAD 1340
R+K W LS AG+ + ++ L S+P Y M +P +C++I+ L F W + D
Sbjct: 668 RQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPD 727
Query: 1341 HRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFN 1400
RK ++W + +PK+ GGLGF D+ N + +AKL W +L +SL +++L KY +
Sbjct: 728 VRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHS 787
Query: 1401 PGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMP 1460
LP P S W+ I I+++G+ W + NG KVS W D W+ P+ P
Sbjct: 788 SSFMECKLPSQP-SHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGP 846
Query: 1461 DVHSEAWNANLPVAAFLENG--DWNWNSLSQLLP--DDVCRRIRALNPPHLERGEDEPFW 1516
+ + +L V+A + W+WN ++ +LP +++ +++ P RG D+ W
Sbjct: 847 ALRE---HQDLRVSALINQNTLQWDWNKIAVILPNYENLIKQL----PAPSSRGVDKLAW 899
Query: 1517 GLSPDGAFSLNS---VFLILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNK 1573
G ++ S + + P P + ++W + P+ + ++WK A L
Sbjct: 900 LPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGI 959
Query: 1574 ERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ V+R+++ + C RC ES H CE VW
Sbjct: 960 QLVRRHISPSAACHRC-GAPESTTHLFFHCEFAAQVW 995
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 255 bits (652), Expect = 1e-67
Identities = 158/526 (30%), Positives = 251/526 (47%), Gaps = 24/526 (4%)
Query: 1099 ATLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIER 1158
A L+ GF +K+I I WCI++ + G P RG+RQGDP+SPYLF+LC E
Sbjct: 375 ALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEV 434
Query: 1159 LALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEAS 1218
L I+ A KV P++SHLLFADD + F +A+ +Q +I EIL + S
Sbjct: 435 LIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVS 494
Query: 1219 GQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLID 1278
GQ+++ KS + F V D I LGI +G YLG+P + F+F+ D
Sbjct: 495 GQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRD 554
Query: 1279 KVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGST 1338
+++ +++GW LS G+ + +S +LP YVM +P + ++ F W S
Sbjct: 555 RLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSN 614
Query: 1339 ADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKY- 1397
D R H ++WD +CS K GGLGF ++ N A +AK W ++ DSL+ +V K +Y
Sbjct: 615 GDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYF 674
Query: 1398 -KFNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPIT 1456
K NP + S W+ + A ++ KG+ +G+G +S W D WIP P
Sbjct: 675 RKSNP---LDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRP 731
Query: 1457 SFMPDVHSEAWNANLPVAAFLENGD--WNWNSLSQLLPDDVCRRIRALNPPHLERGEDEP 1514
+ + +L V + +++ WN + L +L + I AL P ED
Sbjct: 732 A---KYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISAL-PIGNPNMEDTL 787
Query: 1515 FWGLSPDGAFSLNSVF----------LILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKT 1564
W + G +++ S + L+ P + + ++W + PP+ + LW+
Sbjct: 788 GWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLK---AYIWKVQCPPKLRHFLWQI 844
Query: 1565 AHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
G + ++ KR + D C C EES+ H + C + +W
Sbjct: 845 LSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW 890
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 246 bits (628), Expect = 8e-65
Identities = 154/525 (29%), Positives = 251/525 (47%), Gaps = 22/525 (4%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
T++ FGF +K+I I + S + G+ P+RG+RQGDP+SPYLF+LC + L
Sbjct: 974 TMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDIL 1033
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
+ I S G + ++G P+I+HL FADD + F +A+V + ++ + SG
Sbjct: 1034 SHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 1093
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QK++ KS + F V+ ++ L I G YLG+P KE F ++ID+
Sbjct: 1094 QKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDR 1153
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V+K+ S W LS AG+ + +S L++P Y M +P G+ EIE L NF W +
Sbjct: 1154 VKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKAS 1213
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ R ++W + K +GGLGF DL N A +AK AW ++ +SL+ +V+KA+Y
Sbjct: 1214 NQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFK 1273
Query: 1400 NPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFM 1459
+ + + K S W + +++KG + +G+G + DN + + P
Sbjct: 1274 DVSILDAKVRKQ-QSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNT 1332
Query: 1460 PDVHSEAWNANLPVAAFLENGD---WNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFW 1516
+ + E NL F G W+ + +SQ + I + ++ D+ W
Sbjct: 1333 EETYKEMTINNL----FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK-PDKIIW 1387
Query: 1517 GLSPDGAFSLNSVFLIL----------LPPPPVSYE-KTFEHVWNFRGPPRAQAVLWKTA 1565
+ G +++ S + +L + PP S + KT +WN P+ + LW+
Sbjct: 1388 NYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKT--RIWNLPIMPKLKHFLWRAL 1445
Query: 1566 HGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L T + R M D +CPRC E ES+ HA+ C W
Sbjct: 1446 SQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 1490
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 245 bits (626), Expect = 1e-64
Identities = 154/525 (29%), Positives = 250/525 (47%), Gaps = 22/525 (4%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
T++ FGF +K+I I + S + G+ P+RG+RQGDP+SPYLF+LC + L
Sbjct: 748 TMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDIL 807
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
+ I S G + ++G P+I+HL FADD + F +A+V + ++ + SG
Sbjct: 808 SHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 867
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QK++ KS + F V+ ++ L I G YLG+P KE F ++ID+
Sbjct: 868 QKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDR 927
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V+K+ S W LS AG+ + +S L++P Y M +P G+ EIE L NF W +
Sbjct: 928 VKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKAS 987
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ R ++W + K +GGLGF DL N A +AK AW ++ +SL+ +V+KA+Y
Sbjct: 988 NQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFK 1047
Query: 1400 NPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFM 1459
+ + + K S W + +++KG + +G+G + DN + + P
Sbjct: 1048 DVSILDAKVRKQ-QSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNT 1106
Query: 1460 PDVHSEAWNANLPVAAFLENGD---WNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFW 1516
+ + E NL F G W+ + +SQ + I + ++ D+ W
Sbjct: 1107 EETYKEMTINNL----FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK-PDKIIW 1161
Query: 1517 GLSPDGAFSLNSVFLIL----------LPPPPVSYE-KTFEHVWNFRGPPRAQAVLWKTA 1565
+ G +++ S + +L + PP S + KT +WN P+ + LW+
Sbjct: 1162 NYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKT--RIWNLPIMPKLKHFLWRAL 1219
Query: 1566 HGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L T + R M D CPRC E ES+ HA+ C W
Sbjct: 1220 SQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAW 1264
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 244 bits (622), Expect = 4e-64
Identities = 152/518 (29%), Positives = 249/518 (47%), Gaps = 24/518 (4%)
Query: 1101 LQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLA 1160
L GF DK+I + C+ + S G+ S PSRG+RQGDP+SPYLF+LC E L+
Sbjct: 534 LMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLS 593
Query: 1161 LTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQ 1220
+ A G +V R P ++HLLFADD + F + + + IL + ASGQ
Sbjct: 594 GLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQ 653
Query: 1221 KVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKV 1280
++ KS + FS ++ +L I +G YLG+P ++ F+ ++D++
Sbjct: 654 SINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRI 713
Query: 1281 RKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTAD 1340
R++ W + LS AG+ L ++ L S+P+Y M +P +C++I+ + F W S D
Sbjct: 714 RQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPD 773
Query: 1341 HRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFN 1400
RK +SWD + P ++GGLGF ++ AKL+W IL + SL ++VL KY
Sbjct: 774 KRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNT 826
Query: 1401 PGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMP 1460
S W+GI ++ KG+ W++G G ++ W + W+ P T P
Sbjct: 827 SSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGP 886
Query: 1461 DVHSEAWNANLPVAAFL--ENGDWNWNSLSQLLP--DDVCRRIRALNPPHLERGEDEPFW 1516
+ N +L V + + WN ++ + LP +D R+I +N L +D W
Sbjct: 887 PTET---NKDLSVHDLICHDVKSWNVEAIRKHLPQYEDQIRKI-TINALPL---QDSLVW 939
Query: 1517 GLSPDGAFSLNSVFLIL----LPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTN 1572
G ++ + + + P + + +++W P+ + LWK G L
Sbjct: 940 LPVKSGEYTTKTGYALAKLNSFPASQLDFNWQ-KNIWKIHTSPKVKHFLWKAMKGALPVG 998
Query: 1573 KERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ +RN+ + TC RC + ES +H + C K VW
Sbjct: 999 EALSRRNIEAEVTCKRC-GQTESSLHLMLLCPYAKKVW 1035
>At3g45550 putative protein
Length = 851
Score = 244 bits (622), Expect = 4e-64
Identities = 155/534 (29%), Positives = 242/534 (45%), Gaps = 40/534 (7%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
T++ FGF DK+I I + S + G+ +P+RG+RQGDP+SPYLF+LC + L
Sbjct: 213 TMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDIL 272
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
+ IK S G + ++G P+I+HL FADD + F +A+V + ++ + SG
Sbjct: 273 SHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 332
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QK++ KS + F V+ ++ L I G YLG+P KE FN++ID+
Sbjct: 333 QKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDR 392
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V+++ + W LS AG+ L +S L++P Y M +P G+ EIE L NF W +
Sbjct: 393 VKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKAS 452
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ R ++W + K +GGLGF DL N A +AK AW I+ +SL+ +V+KA+Y F
Sbjct: 453 NKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARY-F 511
Query: 1400 NPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGP---IT 1456
+ S W + ++ KG ++ +G+G + DN + + P +T
Sbjct: 512 KDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVVDSHPPRPLLT 571
Query: 1457 S-----------FMPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPP 1505
F HS W+ N + F++ D D +RI
Sbjct: 572 DEQHNGLSLDNLFQHRGHSRCWD-NAKLQTFVDQSD-----------HDYIKRIYL---- 615
Query: 1506 HLERGEDEPFWGLSPDGAFSLNSVFLILLPPP---------PVSYEKTFEHVWNFRGPPR 1556
D W + G +++ S + + P P +WN P+
Sbjct: 616 STRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPK 675
Query: 1557 AQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ LW+ L T R M D CPRC E ES+ HA+ C W
Sbjct: 676 LKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAW 729
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 243 bits (620), Expect = 7e-64
Identities = 157/519 (30%), Positives = 246/519 (47%), Gaps = 20/519 (3%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF+DK+I I C++S + + G + P RG+RQGDPISP+LFVLC E L ++
Sbjct: 549 GFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQ 608
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A + + + SGPS++HLLF DD L A+ + L + SGQ ++
Sbjct: 609 QAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINV 668
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS + F V + I + GI G YLG+P S ++ F ++ +K++ L
Sbjct: 669 EKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHL 728
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
SGW TLS G+ L +S L+LP Y+M +P G+C ++ + +F W S K
Sbjct: 729 SGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKI 788
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPG-L 1403
H I + PK GG GF DL+ NQA +AK AW + +D S+ +Q+ K++Y N L
Sbjct: 789 HWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFL 848
Query: 1404 RAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVH 1463
A +P S TW+ I ++ G+K +GNG + + W D W+ + ++H
Sbjct: 849 NARQGTRP--SYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWL--FDGHSRRPMNLH 904
Query: 1464 SEAWNANLPVAAFLE--NGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPD 1521
S N ++ V+ ++ +WN L++L + + I P L ED W + +
Sbjct: 905 S-LMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQRP--LISSEDSYCWAGTNN 961
Query: 1522 GAFSLNS--------VFLILLPPPPV--SYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLT 1571
G +++ S F L V S F+ VW+ P+ + +WK G L
Sbjct: 962 GLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAV 1021
Query: 1572 NKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
R + C C EE E++ H + C + VW
Sbjct: 1022 EDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVW 1060
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 242 bits (618), Expect = 1e-63
Identities = 154/522 (29%), Positives = 237/522 (44%), Gaps = 26/522 (4%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF+ +I + C+SS S + G P RG+RQGDP+SP+LFVLC E L +
Sbjct: 326 GFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILN 385
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A G+ + +GPS++HLLFADD +L +AS + I L + SGQ ++
Sbjct: 386 QAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINS 445
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS + F V++ I++ GIQ G YLG+P + F F+ +K++ +L
Sbjct: 446 EKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRL 505
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
SGW TLS G+ L +S ++ P Y M + +C ++ + +F W S D +K
Sbjct: 506 SGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKI 565
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H I + PK GG GF DL+ NQA +AK A + D DSL +Q+LK++Y N
Sbjct: 566 HWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFL 625
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWI----PNMGPITSFMP 1460
+ P S W+ I ++ G+K +GNG W DNWI P M
Sbjct: 626 SATKGTRP-SYAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMV 684
Query: 1461 DVHSEAWNANLPVAAFLE--NGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGL 1518
D+ L V+ ++ + +WN N L L P + I P + +D W
Sbjct: 685 DI-------QLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRP--MASRQDSFCWFG 735
Query: 1519 SPDGAFSLNSVF----------LILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGR 1568
+ G +++ S + + S F +WN P+ + LWK G
Sbjct: 736 TNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGA 795
Query: 1569 LLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ R + + C C E+ E++ H + C + VW
Sbjct: 796 VAVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVW 837
>At1g24640 hypothetical protein
Length = 1270
Score = 228 bits (581), Expect = 2e-59
Identities = 154/519 (29%), Positives = 244/519 (46%), Gaps = 44/519 (8%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF K++ I C+SS + + RG+RQGDP+SP+LFVLC E L +
Sbjct: 560 GFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLN 619
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A +G + + +GP + HLLFADD + +AS +Q++++ +IL + A+GQ ++
Sbjct: 620 KAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINL 679
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS + F + V + I LGI G YLG+P S + ++L D++++KL
Sbjct: 680 NKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKL 739
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
W LS G+ L +S L++P + M +PI C+ +E +F W S RK
Sbjct: 740 DVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKI 799
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H SW+ +C PKD GGLGF D+++ NQA +AK AW +L D L +++LK++Y
Sbjct: 800 HWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL 859
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHS 1464
L + P S W+ I ++ KG++ +G+G + W D WI + G + ++
Sbjct: 860 DAALSQRP-SFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNL-- 916
Query: 1465 EAWNANLPVAAFL--ENGDWNWNSLSQL-LPDDVCRRIRALNPPHLERGEDEPFWGLSPD 1521
++ L V A L G W+ L L LP+D+ RI+A+ P + D W L+
Sbjct: 917 -IYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDIL-RIKAIKP--VISQADFFVWKLNKS 972
Query: 1522 GAFSLNSVFLILLPPPPVSYEKTFE----------HVWNFRGPPRAQAVLWKTAHGRLLT 1571
G FS+ S + + + VWN + P+ + LWK
Sbjct: 973 GDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWKV------- 1025
Query: 1572 NKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
C E ES H + C + +W
Sbjct: 1026 -----------------CGELGESTNHTLFLCPLSRQIW 1047
>At2g11240 pseudogene
Length = 1044
Score = 211 bits (537), Expect = 3e-54
Identities = 110/349 (31%), Positives = 180/349 (51%), Gaps = 1/349 (0%)
Query: 1101 LQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLA 1160
+Q GF +I I CI++ S G+ + P RG+RQGDP+SP+LF++C E L+
Sbjct: 419 MQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLS 478
Query: 1161 LTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQ 1220
+ A DG +V + P ++HLLFADD + F + + IL + EASGQ
Sbjct: 479 GLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQ 538
Query: 1221 KVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKV 1280
++ KS + FS+ D + LGIQ LG YLG+P + ++ FN ++D++
Sbjct: 539 MINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRI 598
Query: 1281 RKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTAD 1340
R++ W LS AG+ ++ +S L S+P Y M + + +C+ I+ +F W S+AD
Sbjct: 599 RQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSAD 658
Query: 1341 HRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFN 1400
+K I+W + K +GGLGF D+ N A +AKL+W I+ + ++L KY
Sbjct: 659 KKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRT 718
Query: 1401 PGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWI 1449
+ S W+GIC +++ + +G+G+ W + W+
Sbjct: 719 SSFLDCSV-TAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPWL 766
>At4g10830 putative protein
Length = 1294
Score = 209 bits (532), Expect = 1e-53
Identities = 108/339 (31%), Positives = 184/339 (53%), Gaps = 1/339 (0%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
T++ FGF + +I+ I + S + + G + P RG+RQGDP+SPYLF+LC + L
Sbjct: 954 TMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADIL 1013
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
IK+ ++G + ++G P ++HL FADD + F +++V + ++ + SG
Sbjct: 1014 NHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSG 1073
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QK++ KS + F VH +++ + LGIQ G YLG+P ++ FN++I++
Sbjct: 1074 QKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIER 1133
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V+K+ S W LS AG+ + +S +S+P Y M +P+ + EIE L NF W A
Sbjct: 1134 VKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNA 1193
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
R+ I+W + K +GGLGF DL N A +AK W ++ + +SL+ +++KA+Y F
Sbjct: 1194 KKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARY-F 1252
Query: 1400 NPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNG 1438
+ S W + +++KG ++ +G+G
Sbjct: 1253 REDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDG 1291
>At1g25430 hypothetical protein
Length = 1213
Score = 200 bits (509), Expect = 5e-51
Identities = 151/521 (28%), Positives = 228/521 (42%), Gaps = 18/521 (3%)
Query: 1098 VATLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIE 1157
+A L+ +KFI I CIS+ + +S G F ++G+RQGDP+SPYLFVL +E
Sbjct: 607 IAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAME 666
Query: 1158 RLALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEA 1217
+ + G + S SISHL+FADDV++F + I E L +F
Sbjct: 667 AFSNLLHSRYESGLIH-YHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASW 725
Query: 1218 SGQKVSPPKSRVFFSK-NVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFL 1276
SG KV+ KS ++ + N + A+ A G T YLG+PL++ L + L
Sbjct: 726 SGLKVNKDKSHLYLAGLNQLESNANA---AYGFPIGTLPIRYLGLPLMNRKLRIAEYEPL 782
Query: 1277 IDKVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWG 1336
++K+ + W LSFAGR+ L S + + M T +P G + IE LC F+W
Sbjct: 783 LEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWS 842
Query: 1337 STADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAK 1396
+ K +SW +C PK +GGLG L N+ +L W + KDSLW +
Sbjct: 843 GNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWAD-WQHL 901
Query: 1397 YKFNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPIT 1456
+ + G DS TWK + P+ + + +GNG+K +W DNW ++GP+
Sbjct: 902 HHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNW-TSLGPLF 960
Query: 1457 SFMPDVHSEAWNANL---PVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDE 1513
+ D+ + L +AF E+G W +S+ P P ED
Sbjct: 961 RIIGDIGPSSLRVPLLAKVASAFSEDG-WRL-PVSRSAPAKGIHDHLCTVPVPSTAQEDV 1018
Query: 1514 PFWGLSPDG----AFSLNSVFLILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRL 1569
+ S +G FS + + P V + +W P+ +W + RL
Sbjct: 1019 DRYEWSVNGFLCQGFSAAKTWEAIRPKATV--KSWASSIWFKGAVPKYAFNMWVSHLNRL 1076
Query: 1570 LTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
LT + C C ES H + CE VW
Sbjct: 1077 LTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVW 1117
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.341 0.150 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,946,476
Number of Sequences: 26719
Number of extensions: 1612530
Number of successful extensions: 5342
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5040
Number of HSP's gapped (non-prelim): 169
length of query: 1611
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1498
effective length of database: 8,299,349
effective search space: 12432424802
effective search space used: 12432424802
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0027.9