BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.7
         (303 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g07940 hypothetical protein                                         34  0.11
At3g21340 serine/threonine-specific protein kinase, putative           31  0.72
At5g50160 FRO1 and FRO2-like protein                                   29  3.6
At3g17910 putative surfeit 1 protein                                   28  4.7
At3g09710 putative SF16 protein                                        28  6.1
At1g69260 unknown protein                                              28  6.1
At5g58340 similar to unknown protein (gb|AAF63134.1)                   28  8.0
At1g60020 hypothetical protein                                         28  8.0
At1g49450 putative protein                                             28  8.0

>At5g07940 hypothetical protein
          Length = 1540

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 116 NDSSAGSPTETLLRLLLPLNDKVQWTSHNVASSEPPTLPQSEHFTGPFNRLRSRSLTELT 175
           N   + S  +T+L LL  ++     +S    S  P     +E + G F   +S +     
Sbjct: 807 NQVKSASSRQTMLELLHKVDQSPDNSSETNVSGIPEANASAE-YGGQFRHNQSSASQGFN 865

Query: 176 TQIAPPNKNGHAPPHIE-SRKSSQSVNPYY 204
            Q+APP++   +P +++ SR S Q +N ++
Sbjct: 866 LQLAPPSQLAPSPDNVQFSRNSLQPLNSFH 895


>At3g21340 serine/threonine-specific protein kinase, putative
          Length = 880

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 12/39 (30%), Positives = 22/39 (55%)

Query: 168 SRSLTELTTQIAPPNKNGHAPPHIESRKSSQSVNPYYVW 206
           ++  TELTT +   + NG+APP +    +S  ++ +  W
Sbjct: 227 AKEWTELTTNLNINSSNGYAPPEVVMASASTPISTFGTW 265


>At5g50160 FRO1 and FRO2-like protein
          Length = 728

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/86 (25%), Positives = 37/86 (42%), Gaps = 6/86 (6%)

Query: 64  GDRFSWWALPGRRALNLMASGATCVQRLNGSR-DSAIHTKYRISLRSSSMRDDNDSSAGS 122
           GDR  +W LPG     +   G   + R+  SR +S I +    S ++  +    D     
Sbjct: 285 GDRHFYWVLPG-----MFLFGLDKILRIVQSRSESCILSANLFSCKAIELVLPKDPMLNY 339

Query: 123 PTETLLRLLLPLNDKVQWTSHNVASS 148
              + + L +PL  + QW   ++ SS
Sbjct: 340 APSSFIFLNIPLVSRFQWHPFSIISS 365


>At3g17910 putative surfeit 1 protein
          Length = 354

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 126 TLLRLLLPLNDKVQWTSHNVASSEPPTLPQ---SEHFTGPFNRLRSRS--LTELTTQIAP 180
           +L ++L   N K  W S   + S  P+LP+   S HF+   +   S S  L   ++  AP
Sbjct: 4   SLSKILTRSNTKRYWCSTTTSISASPSLPKQFWSRHFSAVADSSSSSSAALGSQSSSSAP 63

Query: 181 PNKN 184
           P +N
Sbjct: 64  PQEN 67


>At3g09710 putative SF16 protein
          Length = 454

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/54 (29%), Positives = 22/54 (40%)

Query: 133 PLNDKVQWTSHNVASSEPPTLPQSEHFTGPFNRLRSRSLTELTTQIAPPNKNGH 186
           P +D V  T  +V    PP+ P+S H     NR   +S  E    +      GH
Sbjct: 68  PSSDSVTATVAHVLVDSPPSSPESVHQAIVVNRFAGKSKEEAAAILIQSTFRGH 121


>At1g69260 unknown protein
          Length = 345

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 141 TSHNVASSEPPTLPQSEHFTGPFNRLRSRSLTELTTQIAPPNKNGHAPP 189
           +S    S    T PQ E  T P NRLR  S  ++  ++ P  K     P
Sbjct: 227 SSDEARSLPSTTQPQQETTTKPTNRLRRLSSVDMNMKMEPQGKGKSEMP 275


>At5g58340 similar to unknown protein (gb|AAF63134.1)
          Length = 466

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/32 (37%), Positives = 18/32 (55%)

Query: 164 NRLRSRSLTELTTQIAPPNKNGHAPPHIESRK 195
           +R+R R  T +T  ++P  K G A PH+   K
Sbjct: 366 SRVRPRRPTPVTLSVSPLKKGGLAKPHVRRPK 397


>At1g60020 hypothetical protein
          Length = 1194

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 19/148 (12%)

Query: 140 WTSHNVASSEPPTLPQSEHFTGPFNRLRSRSLTELTT-----------QIAPPNKNGHAP 188
           +TS +V   E  T P ++    PF  L   +   +TT            + PP ++ H P
Sbjct: 694 YTSRHVQFVEN-TYPFTKPTLDPFTNLEESNNHSITTTVPSPPFVQLPSVPPPTRDPHQP 752

Query: 189 PHIESRKSSQSVNP----YYVWTCCSSFINPRISPLTMKYECPQLSLSIITPMPKAKTIG 244
           P  +   S   ++P      V T    F + R S  T+  +   +   + +P      I 
Sbjct: 753 PPSQPAPSPSPLSPPSMSSPVMTSSPQFSSNRDS-TTLHGDYSHVDYGLSSPSNPPGPIT 811

Query: 245 KERIASKRDEPTG--EHQRQTDRPNPRS 270
               +    EPT    H  Q ++  P S
Sbjct: 812 SPTTSKSPSEPTSSPSHSNQPNKTPPNS 839


>At1g49450 putative protein
          Length = 471

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 20/85 (23%), Positives = 32/85 (37%)

Query: 81  MASGATCVQRLNGSRDSAIHTKYRISLRSSSMRDDNDSSAGSPTETLLRLLLPLNDKVQW 140
           + SG+   +      D   H +   S  S S R  N SSA S + + +  L P N     
Sbjct: 22  LKSGSLAAEEETYHSDGDHHNQSTFSSNSDSQRPSNASSASSDSSSPIYPLSPWNQTYYP 81

Query: 141 TSHNVASSEPPTLPQSEHFTGPFNR 165
           ++ N  S    T         P+++
Sbjct: 82  SNDNTTSFSSVTQSPWNQTYSPYHK 106


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.314    0.128    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,269,327
Number of Sequences: 26719
Number of extensions: 309842
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 9
length of query: 303
length of database: 11,318,596
effective HSP length: 99
effective length of query: 204
effective length of database: 8,673,415
effective search space: 1769376660
effective search space used: 1769376660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)