BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.4
(161 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32240 putative myosin heavy chain 38 0.002
At1g55250 unknown protein 32 0.11
At5g62410 chromosomal protein - like 32 0.19
At5g41790 myosin heavy chain-like protein 32 0.19
At5g61460 SMC-like protein (MIM) 31 0.25
At5g07660 SMC-like protein 31 0.25
At4g36520 trichohyalin like protein 31 0.25
At1g65530 hypothetical protein 31 0.25
At5g07890 putative protein 30 0.43
At5g15880 unknown protein 30 0.57
At4g03760 hypothetical protein 30 0.57
At5g59210 unknown protein 29 0.97
At5g16930 unknown protein 29 0.97
At1g03830 unknown protein 29 0.97
At5g16180 putative protein 29 1.3
At3g43310 putative protein 29 1.3
At5g61200 putative protein 28 1.6
At5g56360 unknown protein 28 1.6
At4g32560 unknown protein 28 1.6
At4g05190 kinesin - like protein 28 1.6
>At2g32240 putative myosin heavy chain
Length = 1333
Score = 38.1 bits (87), Expect = 0.002
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 37 INQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKA 96
++Q LS + ++ ++EF S EA L E+ R+L ++ E Q+ E + +LK
Sbjct: 796 LHQSLSIDSEHRLQKAMEEFTSRDSEASSLTEKLRDLEGKIKSYEEQLAEASGKSSSLKE 855
Query: 97 ALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVL 142
L+Q G + A +++ +KL ++E D QEKS + + ++L
Sbjct: 856 KLEQT--LGRLAAAESVNEKL----KQEFDQAQEKSLQSSSESELL 895
Score = 37.4 bits (85), Expect = 0.004
Identities = 27/102 (26%), Positives = 50/102 (48%), Gaps = 5/102 (4%)
Query: 55 EFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALV 114
EF LL+ +E E A + +++EKM E E ++AALK S G L A+
Sbjct: 237 EFSELLKSTKESAKEMEEKMASLQQEIKELNEKMSENEKVEAALK-----SSAGELAAVQ 291
Query: 115 DKLSTTAREELDIRQEKSRLETQQEDVLRRMEPLRARYDSYR 156
++L+ + L+ Q+ S E +++ + +E +A ++
Sbjct: 292 EELALSKSRLLETEQKVSSTEALIDELTQELEQKKASESRFK 333
Score = 26.2 bits (56), Expect = 8.2
Identities = 36/151 (23%), Positives = 73/151 (47%), Gaps = 22/151 (14%)
Query: 7 LNQIRSLAFDQDL----FWELHSSLSLAEELTGLINQLLSRNIIASVK-----TPLQEFL 57
+ ++R++A ++ + F EL +LS E+ + + + ASVK + LQE
Sbjct: 1117 IEKLRAVAAEKSVLESHFEELEKTLS---EVKAQLKENVENAATASVKVAELTSKLQEHE 1173
Query: 58 SLLREAVPLYEEHRELTARVFFAEHQIDEK----MEEFEALKAALKQADPEGSVGALKAL 113
+ E L E+ +L + A+ IDE+ ++ L++ALK++ E + A K
Sbjct: 1174 HIAGERDVLNEQVLQLQKELQAAQSSIDEQKQAHSQKQSELESALKKSQEE--IEAKKKA 1231
Query: 114 VDKLSTTAR---EELDIRQEKSRLETQQEDV 141
V + + + +++ + K++ ET+ DV
Sbjct: 1232 VTEFESMVKDLEQKVQLADAKTK-ETEAMDV 1261
>At1g55250 unknown protein
Length = 899
Score = 32.3 bits (72), Expect = 0.11
Identities = 23/105 (21%), Positives = 48/105 (44%), Gaps = 6/105 (5%)
Query: 44 NIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADP 103
N A + ++ EA L +E R L + + ++ + +EF LK+A+ ++
Sbjct: 724 NFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKEFRWLKSAVSSSEK 783
Query: 104 EGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPL 148
E + + + + ELD +EK +LE + ++ + +E L
Sbjct: 784 EYEQ------ISRRTDDIKLELDDEREKKKLEEELMELNKELEEL 822
>At5g62410 chromosomal protein - like
Length = 1175
Score = 31.6 bits (70), Expect = 0.19
Identities = 25/93 (26%), Positives = 42/93 (44%), Gaps = 2/93 (2%)
Query: 58 SLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPE--GSVGALKALVD 115
SL + L E E A+V + DE + E + + A +K+ D + G V + +
Sbjct: 840 SLETQISTLTSEVDEQRAKVDALQKIHDESLAELKLIHAKMKECDTQISGFVTDQEKCLQ 899
Query: 116 KLSTTAREELDIRQEKSRLETQQEDVLRRMEPL 148
KLS E + E R+ET +D +++ L
Sbjct: 900 KLSDMKLERKKLENEVVRMETDHKDCSVKVDKL 932
>At5g41790 myosin heavy chain-like protein
Length = 1305
Score = 31.6 bits (70), Expect = 0.19
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 66 LYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREEL 125
L ++RE+ AR+ E ++E+ E AL L+ D + S + T E
Sbjct: 785 LEAQNREMVARISELEKTMEERGTELSALTQKLEDNDKQSS--------SSIETLTAEID 836
Query: 126 DIRQEKSRLETQQEDVLRRM 145
+R E + Q+E+V ++M
Sbjct: 837 GLRAELDSMSVQKEEVEKQM 856
>At5g61460 SMC-like protein (MIM)
Length = 1057
Score = 31.2 bits (69), Expect = 0.25
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 72 ELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEK 131
EL + +IDEK E L+ LK+A E L AL + + +A+ E+D +E
Sbjct: 717 ELQREIMKDLEEIDEKEAFLEKLQNCLKEA--ELKANKLTALFENMRESAKGEIDAFEEA 774
Query: 132 SRLETQQEDVLRRMEPLRARYDSYRAN 158
+ E L+ E + Y++ N
Sbjct: 775 ENELKKIEKDLQSAEAEKIHYENIMKN 801
>At5g07660 SMC-like protein
Length = 1058
Score = 31.2 bits (69), Expect = 0.25
Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 2/82 (2%)
Query: 72 ELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEK 131
EL + + +I+EK E L+ +LK+A E LKA + L +A+ E++ ++
Sbjct: 718 ELHLEIMKFQKEIEEKESLLEKLQDSLKEA--ELKANELKASYENLYESAKGEIEALEKA 775
Query: 132 SRLETQQEDVLRRMEPLRARYD 153
++ED L E + Y+
Sbjct: 776 EDELKEKEDELHSAETEKNHYE 797
>At4g36520 trichohyalin like protein
Length = 1432
Score = 31.2 bits (69), Expect = 0.25
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 25 SSLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEH-RELTARVFFAEHQ 83
S+L ++ EL G ++ R+ +T L E L + E + E RE R E
Sbjct: 600 STLEVSVELNGNGKKMEMRS---QSETKLNEPLKRMEEETRIKEARLREENDR---RERV 653
Query: 84 IDEKMEEFEALKAALKQADPEGSV--GALKALVDKLSTTAREELDIRQEKSRLETQQEDV 141
EK E + LKAAL+Q + E + KA ++ + ARE+ +++ +++ QQE
Sbjct: 654 AVEKAENEKRLKAALEQEEKERKIKEAREKAENERRAVEAREK---AEQERKMKEQQELE 710
Query: 142 LRRMEPLRARYDSYRANPPF 161
L+ E ++ R F
Sbjct: 711 LQLKEAFEKEEENRRMREAF 730
>At1g65530 hypothetical protein
Length = 264
Score = 31.2 bits (69), Expect = 0.25
Identities = 31/121 (25%), Positives = 55/121 (44%), Gaps = 24/121 (19%)
Query: 21 WELHSSLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFA 80
W L ++LS +L ++ SV +EFL L+++ V LY E
Sbjct: 94 WRLLTTLSF----------ILPIGVLRSVSMEREEFLKLVKKEVDLYNSMVE-------- 135
Query: 81 EHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQED 140
+ D++ + +A AA + +D A KA+ DK S+ + ++ +K LE + +D
Sbjct: 136 KGGTDDEEDARKAYLAAREDSDR----SAQKAIADKTSSALLDRVETMLQK--LEKEIDD 189
Query: 141 V 141
V
Sbjct: 190 V 190
>At5g07890 putative protein
Length = 389
Score = 30.4 bits (67), Expect = 0.43
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 38 NQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAE--HQIDEKMEEFEALK 95
N+ L AS K+ +++F +E + E+ + L A FFAE H + E
Sbjct: 221 NEDLREKFTASEKS-IKDFFQSTKERLES-EDEQPLNAMCFFAELSHVLPVSNEVRNCFD 278
Query: 96 AALKQADPEGSVGALKALVDKLSTTARE-----------ELDIRQEKSRLETQQEDVLRR 144
A +K+ + +V L+DK+ ++ + +++QEK + + + ED+ +
Sbjct: 279 AIMKKLELSQNVN----LIDKVEGMGKQIHQHEDVVKQLKEELKQEKLKAKEEAEDLTQE 334
Query: 145 MEPLR 149
M LR
Sbjct: 335 MAELR 339
>At5g15880 unknown protein
Length = 348
Score = 30.0 bits (66), Expect = 0.57
Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 12/74 (16%)
Query: 66 LYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLST---TAR 122
L EE+ + E +I+EK E ++L LK+ L+A+ + L T A+
Sbjct: 103 LLEENSAYENAISTCETKIEEKRNEADSLLRKLKE---------LEAVEENLKTEQDNAQ 153
Query: 123 EELDIRQEKSRLET 136
LD RQ KS ET
Sbjct: 154 ASLDARQSKSSSET 167
>At4g03760 hypothetical protein
Length = 723
Score = 30.0 bits (66), Expect = 0.57
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 45 IIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPE 104
++AS+ + + +R + E AR+ AE + DE + + A K A ++ + E
Sbjct: 511 VVASMNRMVHSYDLAMRNNMEAANRLAEADARIQVAERERDEALSQAAAAKVAKEEGEKE 570
Query: 105 GSVGALKALVDKLSTTAREELDIRQE 130
A V+K + EL++R +
Sbjct: 571 -------AFVNKANAIKMAELNLRAD 589
>At5g59210 unknown protein
Length = 434
Score = 29.3 bits (64), Expect = 0.97
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 40 LLSRNIIASVKTPLQEFLSLLREAVPLYEEH----RELTARVFFAEHQIDEKMEEFEALK 95
+L +N + S++ L+E AV L E+ R L RV AE + E+ +L+
Sbjct: 104 VLEQNTVPSLRKALKEIAMEKDAAVVLREDLSAQVRTLKRRVNQAEEEQYRAEEDAASLR 163
Query: 96 AALKQADPEGSVGALKALVDK-LSTTAREELDIRQEKSRLETQQEDVLRRMEPLRARYDS 154
A L + + + +S L+ +LE Q+E VLR+ E R +
Sbjct: 164 AELNSIQQQAMGNSFAGMSPMGVSPDQLPILEKEMANLKLELQKESVLRQQEQHRLAEEQ 223
Query: 155 YR 156
R
Sbjct: 224 TR 225
>At5g16930 unknown protein
Length = 644
Score = 29.3 bits (64), Expect = 0.97
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 30 AEELTGLINQLLSRNIIASVKT-----------PLQEFLSLLREAVP-----LYEEHREL 73
A+ L G+ N ++ + S+KT QEF ++ +A +YEE ++L
Sbjct: 95 AKALKGINNSAHAKKVFESIKTREETRQAEFTAKAQEFKAMQSQAEAERQRVIYEEQKKL 154
Query: 74 TARVFFAEHQIDEK--MEEFE-ALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQE 130
A+HQ K M +E L QA+ E + LV +EE IR+E
Sbjct: 155 ------AQHQAQTKSQMARYEDELARKRMQAENEAQRTRNQELVKM-----QEESAIRRE 203
Query: 131 KSRLETQQEDVLRRMEPLRARYDSYR 156
+R T++E +R + R + + R
Sbjct: 204 VARRATEEEIQAQRRQTEREKAEIER 229
>At1g03830 unknown protein
Length = 991
Score = 29.3 bits (64), Expect = 0.97
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 31 EELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEE 90
EEL L+ +L + A L + L L EA + +L + +ID
Sbjct: 654 EELEKLVLRLTNVESEALEAKKLVDSLKLEAEAAR--DNENKLQTSLVERCIEIDRAKSR 711
Query: 91 FEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPLRA 150
E L+ EG A K LVD + A R+ +++L+T ED ++ ++
Sbjct: 712 IEELEKVCTLNSGEGEASASKKLVDSMKMEAEAS---RKNENKLQTLLEDKCIEIDRAKS 768
Query: 151 RYD 153
R +
Sbjct: 769 RIE 771
>At5g16180 putative protein
Length = 718
Score = 28.9 bits (63), Expect = 1.3
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 29 LAEELTGLINQ-LLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARV-FFAEHQIDE 86
+A+EL L L+ RN V ++FLS E L E+ L +R F E + +
Sbjct: 419 MADELRYLTGGVLILRNKYLIVLYRGKDFLS--DEVADLVEDRERLLSRYQHFEETKRES 476
Query: 87 KMEEFEALKAA--LKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRR 144
+E E + LK+ + G++ + L K L+ EK+RLE + + +
Sbjct: 477 DIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDPRNLETEAEKARLEKELKSQEHK 536
Query: 145 MEPLRARYD 153
+ L+++ +
Sbjct: 537 LSILKSKIE 545
>At3g43310 putative protein
Length = 656
Score = 28.9 bits (63), Expect = 1.3
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 79 FAEHQIDEKMEEFEALKAALKQAD------------PEGSVGALKALVDKLSTTAREELD 126
F E Q E EE A++A K A+ +G + + + +LS + ++
Sbjct: 463 FLEEQAREAREEMVAVEAKRKIAEFTAATRLRNLNSEKGRIEGFEKQILELSESLKKSDS 522
Query: 127 I-RQEKSRLETQQEDVLRRMEPLRARY 152
R E+SRL + ++D LR R+R+
Sbjct: 523 FGRAEQSRLRSSRDDALRTTRSERSRF 549
>At5g61200 putative protein
Length = 389
Score = 28.5 bits (62), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 6/68 (8%)
Query: 82 HQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDV 141
H I +K+E F+ K K D + K LV +L ++++EK + + + ED+
Sbjct: 279 HDIIKKLEVFQDGKLRDKMEDMARQILQYKDLVKQLKD------ELKEEKLKAKEEAEDL 332
Query: 142 LRRMEPLR 149
+ M LR
Sbjct: 333 TQEMAELR 340
>At5g56360 unknown protein
Length = 647
Score = 28.5 bits (62), Expect = 1.6
Identities = 20/69 (28%), Positives = 38/69 (54%), Gaps = 3/69 (4%)
Query: 83 QIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVL 142
+I++ E A LK+ E + LK LVD+L +E+++ +EK RL+ ++E+
Sbjct: 161 EIEQAKVGLEKDAAELKKLKSEQKI--LKGLVDQLKDR-KEQIEKVEEKERLQKEKEEKE 217
Query: 143 RRMEPLRAR 151
++ L A+
Sbjct: 218 KKEAELAAQ 226
>At4g32560 unknown protein
Length = 306
Score = 28.5 bits (62), Expect = 1.6
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 37 INQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFE---- 92
+ QL R V +QE + LLR +E E+ +R +++ + + E
Sbjct: 55 LQQLRERISKEVVDVSVQELIPLLRSLKEFVKEESEVRSRCNVKRSALEDAVHDLEERAG 114
Query: 93 -ALKAALKQADPEG----SVGALKALVDKLSTTAREELDIRQEKSRLETQQE 139
L +++ D +G S+ L + +L T RE + ++++ + Q E
Sbjct: 115 KGLDGEIQEEDLDGLLVVSLDNLTSAKKELGATLREIVSLKRQIDDVPCQSE 166
>At4g05190 kinesin - like protein
Length = 777
Score = 28.5 bits (62), Expect = 1.6
Identities = 18/74 (24%), Positives = 37/74 (49%), Gaps = 11/74 (14%)
Query: 86 EKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELD-IRQEKSRLE---TQQEDV 141
EK+ + +A++ ++ D + + +KL + REELD +++EK + T ED+
Sbjct: 153 EKLSKLDAIENHRREKD-------CRVVAEKLQVSLREELDKVKEEKMAAKQKVTSLEDM 205
Query: 142 LRRMEPLRARYDSY 155
+R++ Y
Sbjct: 206 YKRLQEYNTSLQQY 219
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.132 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,059,049
Number of Sequences: 26719
Number of extensions: 106303
Number of successful extensions: 572
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 55
length of query: 161
length of database: 11,318,596
effective HSP length: 91
effective length of query: 70
effective length of database: 8,887,167
effective search space: 622101690
effective search space used: 622101690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0026.4