BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0024.11
(148 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11420 putative protein 30 0.36
At1g32530 unknown protein 30 0.36
At3g50270 anthranilate N-hydroxycinnamoyl/benzoyltransferase - l... 30 0.62
At4g03770 hypothetical protein 29 0.80
At5g58782 dehydrodolichyl diphosphate synthase - like protein 28 1.4
At2g25480 unknown protein 28 2.3
At1g22920 putative JUN kinase activator protein 27 3.1
At1g18670 hypothetical protein 27 3.1
At4g02400 27 4.0
At4g02070 G/T DNA mismatch repair enzyme 27 4.0
At3g31520 hypothetical protein 27 4.0
At4g32330 unknown protein 27 5.2
At4g07950 putative DNA-directed RNA polymerase subunit 27 5.2
At3g46370 receptor-like protein kinase homolog 27 5.2
At1g73830 bHLH transcription factor (bHLH050) like protein 27 5.2
At1g31540 disease resistance gene, putative 27 5.2
At1g01210 unknown protein 27 5.2
At5g01380 transcription factor GT-3a 26 6.8
At2g25660 unknown protein 26 6.8
At2g24600 unknown protein 26 6.8
>At4g11420 putative protein
Length = 987
Score = 30.4 bits (67), Expect = 0.36
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 31 QGILREILASEFQNSKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRAYSPEFRNE 90
Q ILREI E + ++ + + EKR K +K+ E V + +S RA + + +
Sbjct: 618 QRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGE-KVTK--QSVKERALTEQLKER 674
Query: 91 TLVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTDSTRESEIN 146
+E K++++ K + D KR + + + + RR + RE E++
Sbjct: 675 QEMEKKLQKLAK-TMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELS 729
>At1g32530 unknown protein
Length = 711
Score = 30.4 bits (67), Expect = 0.36
Identities = 22/97 (22%), Positives = 45/97 (45%), Gaps = 8/97 (8%)
Query: 34 LREILASEFQNSKQISKI--WEKRYLKSQKRWFRSKEISVARLPESEYYRAYSPEFRNET 91
L+ + + + K + K+ WEK+ LK Q EI+ + Y+ + E
Sbjct: 484 LKACMEASKKEKKCLKKLVAWEKQILKLQD------EITAEKEKIKALYKTLAQITEYEK 537
Query: 92 LVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSGHARRK 128
+E K ++ K +++ + ++ +S+ A GH +RK
Sbjct: 538 EIEAKWRQEQKAKEEALAQMEEEQRSKEAAEGHNKRK 574
>At3g50270 anthranilate N-hydroxycinnamoyl/benzoyltransferase - like
protein
Length = 450
Score = 29.6 bits (65), Expect = 0.62
Identities = 28/88 (31%), Positives = 38/88 (42%), Gaps = 4/88 (4%)
Query: 61 KRWFRSKEISVARLPESEYYRAYSPEFRNETLVEGKIKRIFKFSKDSKSHLKRSSKSEIA 120
K WF +P SE R SP R + V + IF F+K + S LK + SEIA
Sbjct: 200 KGWFLEGIDYPIHVPVSEAER--SPPSREPSSVPITKEWIFHFTKKNISDLKAKANSEIA 257
Query: 121 YSGHARRKA--ANSCHAYTDSTRESEIN 146
S + A S H + R S ++
Sbjct: 258 SSSDLEVSSLQAVSAHMWRSIIRHSGVS 285
>At4g03770 hypothetical protein
Length = 464
Score = 29.3 bits (64), Expect = 0.80
Identities = 27/120 (22%), Positives = 48/120 (39%), Gaps = 10/120 (8%)
Query: 39 ASEFQNSKQISKIW--------EKRYLKSQKRWFRSKEISVARLPESEYYRAYSPEFRNE 90
A E+ ++IS I E + ++SQ S ++ R+ E + ++ N
Sbjct: 167 AEEYATEQEISAIKLSLAKAENEMKLVRSQMHNAVSSAPNIDRILEESHNTPFTHMISNA 226
Query: 91 TLVE-GKIK-RIFKFSKDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTDSTRESEINLF 148
+ + GK++ F S D K HLK S + A CH + + + +N F
Sbjct: 227 IISDPGKLRIEYFNGSSDPKGHLKLFIISVARAKFRPEERDAGLCHLFVEHLKGPALNWF 286
>At5g58782 dehydrodolichyl diphosphate synthase - like protein
Length = 289
Score = 28.5 bits (62), Expect = 1.4
Identities = 22/76 (28%), Positives = 37/76 (47%), Gaps = 24/76 (31%)
Query: 54 KRYLKSQKRWFRSKEISV------ARLPESEYYRAYSPEFRNETLVEGKIKRIFKFSKDS 107
+RYLKS+ ++F+SKEI V A++PES ++ + + + +
Sbjct: 130 QRYLKSKIQFFQSKEIRVSVIGNLAKIPES------------------LLRTVHELEEAT 171
Query: 108 KSHLKRSSKSEIAYSG 123
KS+ K+ I YSG
Sbjct: 172 KSYKKKHLILAIDYSG 187
>At2g25480 unknown protein
Length = 404
Score = 27.7 bits (60), Expect = 2.3
Identities = 12/47 (25%), Positives = 25/47 (52%)
Query: 101 FKFSKDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTDSTRESEINL 147
F F D ++ +R S++ HA+ + N+ A + T+E+E+ +
Sbjct: 183 FSFRCDQRAEKRREFYSKLEEKIHAKEEEKNTVQAKSKETQEAELKM 229
>At1g22920 putative JUN kinase activator protein
Length = 357
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/45 (35%), Positives = 23/45 (50%)
Query: 84 SPEFRNETLVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSGHARRK 128
SP N V G+I + + + ++S L S IA +GH RRK
Sbjct: 257 SPLLGNGDYVAGQISDLAEKLEQAESQLANSRYGGIAPAGHQRRK 301
>At1g18670 hypothetical protein
Length = 662
Score = 27.3 bits (59), Expect = 3.1
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 14/70 (20%)
Query: 67 KEISVARLPESEYYRAYSPEFR-------------NETLVEGKIKRIFKFSKDSKSHLKR 113
K + A+L +E R +S +F+ + TL E K+++ KD SH+K
Sbjct: 468 KPPAFAKLAPAEDVRHHSQKFQKRNGHSVHNSIDSDSTLFE-KMQKPSNHEKDEASHVKN 526
Query: 114 SSKSEIAYSG 123
+S+ ++ +SG
Sbjct: 527 ASQGDVPFSG 536
>At4g02400
Length = 870
Score = 26.9 bits (58), Expect = 4.0
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 3/84 (3%)
Query: 23 IKFRNHVHQGILREILASEFQNSKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRA 82
IK+R+H+ + +R +L SK+I KI K Y + + + + + PE A
Sbjct: 303 IKYRDHIAK--MRSLLFRHELKSKRIKKIKSKTYHRLKGKDLKKSAMGALMDPEMAKEEA 360
Query: 83 YSPEFRN-ETLVEGKIKRIFKFSK 105
E R E + K K K++K
Sbjct: 361 IKQETRRVEERMTLKHKNTGKWAK 384
>At4g02070 G/T DNA mismatch repair enzyme
Length = 1324
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/74 (22%), Positives = 32/74 (42%)
Query: 59 SQKRWFRSKEISVARLPESEYYRAYSPEFRNETLVEGKIKRIFKFSKDSKSHLKRSSKSE 118
S + W ++ V E + E E LVE K + K ++ SK+ ++ SE
Sbjct: 222 SDEDWGKNVGKEVCESEEDDVELVDENEMDEEELVEEKDEETSKVNRVSKTDSRKRKTSE 281
Query: 119 IAYSGHARRKAANS 132
+ SG ++ ++
Sbjct: 282 VTKSGGEKKSKTDT 295
>At3g31520 hypothetical protein
Length = 528
Score = 26.9 bits (58), Expect = 4.0
Identities = 25/110 (22%), Positives = 44/110 (39%), Gaps = 10/110 (9%)
Query: 39 ASEFQNSKQISKIW--------EKRYLKSQKRWFRSKEISVARLPESEYYRAYSPEFRNE 90
A E+ ++IS I E + ++SQ S ++ R+ E + ++ N
Sbjct: 175 AEEYAREQEISAIKLSLAKAENEMKLVRSQMHNAVSSAPNIDRILEESHNTPFTHRISNA 234
Query: 91 TLVE-GKIK-RIFKFSKDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTD 138
+ + GK++ F S D K HLK S + A CH + +
Sbjct: 235 IISDPGKLRIEYFNGSSDPKRHLKSFIISVARTKFRPEERDAGLCHLFVE 284
>At4g32330 unknown protein
Length = 436
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/47 (23%), Positives = 24/47 (50%)
Query: 101 FKFSKDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTDSTRESEINL 147
F F D ++ ++ ++ HA+ + NS A + T+E+E+ +
Sbjct: 206 FSFKCDQRAEKRKEFYVKLEEKTHAKEEEINSMQAKSKETQEAELRM 252
>At4g07950 putative DNA-directed RNA polymerase subunit
Length = 106
Score = 26.6 bits (57), Expect = 5.2
Identities = 12/27 (44%), Positives = 16/27 (58%)
Query: 61 KRWFRSKEISVARLPESEYYRAYSPEF 87
K +F+S +I A PES +YR EF
Sbjct: 75 KAYFKSMQIRSADEPESRFYRCLKCEF 101
>At3g46370 receptor-like protein kinase homolog
Length = 793
Score = 26.6 bits (57), Expect = 5.2
Identities = 14/34 (41%), Positives = 16/34 (46%)
Query: 57 LKSQKRWFRSKEISVARLPESEYYRAYSPEFRNE 90
LKS R F S+ V R P Y R + P F E
Sbjct: 104 LKSTLRAFLSESTEVIRYPNDFYDRMWVPHFETE 137
>At1g73830 bHLH transcription factor (bHLH050) like protein
Length = 261
Score = 26.6 bits (57), Expect = 5.2
Identities = 30/121 (24%), Positives = 45/121 (36%), Gaps = 12/121 (9%)
Query: 27 NHVHQGILREILASEFQNSKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRAYSPE 86
N+ HQGI S QN+++ S ++ + KS + E SV+ S S
Sbjct: 61 NNFHQGIF---FPSNIQNNEESSSQFDTKKRKSLMEAVSTSENSVSDQTLSTSSAQVS-- 115
Query: 87 FRNETLVEGKIKRIFKFSKDSKSHLKRSSKSEI-AYSGHARRKAANSCHAYTDSTRESEI 145
+ G I S+ K R + E ARR A H+ + R +I
Sbjct: 116 ------INGNISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKI 169
Query: 146 N 146
N
Sbjct: 170 N 170
>At1g31540 disease resistance gene, putative
Length = 776
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 73 RLPESEYYRAYSPEFRNETLVEGKIKRIFKFSKD 106
R + EY+ P N ++GKI++I + S D
Sbjct: 397 RRRDMEYWMDMLPRLENSLRIDGKIEKILRISYD 430
>At1g01210 unknown protein
Length = 106
Score = 26.6 bits (57), Expect = 5.2
Identities = 12/27 (44%), Positives = 16/27 (58%)
Query: 61 KRWFRSKEISVARLPESEYYRAYSPEF 87
K +F+S +I A PES +YR EF
Sbjct: 75 KAYFKSMQIRSADEPESRFYRCLKCEF 101
>At5g01380 transcription factor GT-3a
Length = 323
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 2 ILTTSVTTIPK-----------GTKSDYDFSTIKFRNHVHQGILREILASEFQNSKQISK 50
++TTS +T P+ GTK++ +T+K IL E + + K+
Sbjct: 195 VITTSTSTNPRKRAKKGKGVASGTKAETAGNTLK-------DILEEFMRQTVKMEKEWRD 247
Query: 51 IWEKRYLKSQKR 62
WE + ++ +KR
Sbjct: 248 AWEMKEIEREKR 259
>At2g25660 unknown protein
Length = 2136
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 96 KIKRIFKFSKDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTDSTRESEIN 146
K+ R +KF +SKSH ++S S I+ ++A++ +Y S + +++
Sbjct: 356 KVPRKYKFKWNSKSH--KNSMSNISAKKRILERSASAALSYFHSLSQQKLD 404
>At2g24600 unknown protein
Length = 548
Score = 26.2 bits (56), Expect = 6.8
Identities = 15/52 (28%), Positives = 24/52 (45%)
Query: 66 SKEISVARLPESEYYRAYSPEFRNETLVEGKIKRIFKFSKDSKSHLKRSSKS 117
S+E+ + +E + +S R L+E I + K K H+KR KS
Sbjct: 340 SEEVDSKKAERNEPHIGHSEVIRLLKLIEISTSEIAERKKSKKHHVKRGHKS 391
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,029,887
Number of Sequences: 26719
Number of extensions: 114658
Number of successful extensions: 369
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 31
length of query: 148
length of database: 11,318,596
effective HSP length: 90
effective length of query: 58
effective length of database: 8,913,886
effective search space: 517005388
effective search space used: 517005388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0024.11