BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.9
(388 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47910 reverse transcriptase, putative 194 7e-50
At2g17610 putative non-LTR retroelement reverse transcriptase 191 8e-49
At2g17910 putative non-LTR retroelement reverse transcriptase 171 6e-43
At2g16680 putative non-LTR retroelement reverse transcriptase 170 1e-42
At2g45230 putative non-LTR retroelement reverse transcriptase 159 2e-39
At3g45550 putative protein 159 3e-39
At2g01840 putative non-LTR retroelement reverse transcriptase 154 1e-37
At2g31520 putative non-LTR retroelement reverse transcriptase 149 2e-36
At2g25550 putative non-LTR retroelement reverse transcriptase 149 3e-36
At1g24640 hypothetical protein 149 3e-36
At2g41580 putative non-LTR retroelement reverse transcriptase 148 4e-36
At3g31420 hypothetical protein 146 2e-35
At2g05200 putative non-LTR retroelement reverse transcriptase 140 2e-33
At2g31080 putative non-LTR retroelement reverse transcriptase 139 3e-33
At4g10830 putative protein 137 8e-33
At2g15510 putative non-LTR retroelement reverse transcriptase 134 6e-32
At4g09710 RNA-directed DNA polymerase -like protein 128 5e-30
At4g08830 putative protein 127 1e-29
At2g11240 pseudogene 125 3e-29
At2g07650 putative non-LTR retrolelement reverse transcriptase 121 6e-28
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 194 bits (493), Expect = 7e-50
Identities = 108/293 (36%), Positives = 159/293 (53%), Gaps = 8/293 (2%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
++ +L + + YLGLP +G SKT++F+FV++R+ R+ GW K LS+ G+E++I
Sbjct: 518 DIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMI 577
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
KS+A +P Y+MSCF LP +I + + +A F+W + RG+HW W LC +K DGGL
Sbjct: 578 KSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGL 637
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGY---ITWSSILK 229
GFR F AL+AK R+ P+SL +VFK Y S+ L + K Y W S++
Sbjct: 638 GFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMIS 697
Query: 230 AGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NG 287
A + GL RVG G I++ D W+P + KV L+D +
Sbjct: 698 ARSLVY---KGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSN 754
Query: 288 RWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIR 340
WN++LL+E+F + I A+P+ N D L W+ T G Y KSGY R
Sbjct: 755 FWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTAR 807
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 191 bits (484), Expect = 8e-49
Identities = 114/303 (37%), Positives = 163/303 (53%), Gaps = 7/303 (2%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
+L+QLL + + + F +YLGLP +G++KT F+F+ + + +++ W K LS AG+E+LI
Sbjct: 189 QLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLI 248
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
KSI AIP+Y MSCF+LP + I + F+W + + W W+ L K+ GGL
Sbjct: 249 KSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGL 308
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAK---KGYITWSSILK 229
R + F AL+AK RI P SLM RVFK Y P +L AK + W SIL
Sbjct: 309 AIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILH 368
Query: 230 AGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLDNGRW 289
I GL++ G+G I L +D WLP + + KVSDLL GRW
Sbjct: 369 GTKLI---SRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLLIEGRW 425
Query: 290 NLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREEHR 349
N +LL ++ + + I AI S G DA+ W T +G Y KSGY +R + +++H
Sbjct: 426 NEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLS-QQQHA 484
Query: 350 PLP 352
LP
Sbjct: 485 SLP 487
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 171 bits (433), Expect = 6e-43
Identities = 103/278 (37%), Positives = 153/278 (54%), Gaps = 11/278 (3%)
Query: 68 KYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCF 127
KYLGLP + SK +F F+KE++ RL GW K+LS+ G+E+L+KSIA A+P Y+MSCF
Sbjct: 727 KYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCF 786
Query: 128 ILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAK 187
LP ++C + ++ F+W +R +HW W L K GG GF+ + F +AL+AK
Sbjct: 787 KLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAK 846
Query: 188 N**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKIEGGGGGLRWR 244
R+ SL RVF+ Y +S L A +G W SIL + GLR
Sbjct: 847 QAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLM---QGLRTV 903
Query: 245 VGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NGRWNLELLEEVFSSSP 302
+G+G + + DKWL DGS+ ++ KVS L+D + WNL +L ++F
Sbjct: 904 IGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKD 963
Query: 303 MQKIL-AIPLSNQGNTDALYWYDTFNGVYVCKSGYKFI 339
++ IL PL + D+ W + NG+Y K+GY+F+
Sbjct: 964 VEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFL 999
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 170 bits (430), Expect = 1e-42
Identities = 103/277 (37%), Positives = 157/277 (56%), Gaps = 13/277 (4%)
Query: 68 KYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCF 127
KYLGLP + SK +F ++KE++ L GW +K+LS+ G+EIL+KSIA A+P YIM+CF
Sbjct: 701 KYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCF 760
Query: 128 ILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAK 187
LP +C + ++ F+W +HW L K GG GF+ + F +AL+AK
Sbjct: 761 RLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAK 820
Query: 188 N**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKIEGGGGGLRWR 244
R++ +S++ ++FK Y ++ L A++G TW SIL + GGL+
Sbjct: 821 QAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELL---NGGLKRL 877
Query: 245 VGDGFQINLLQDKWLPDGSSLVYMH-EAIAELRLEKVSDLLD--NGRWNLELLEEVFSSS 301
+G+G Q N+ DKWL DG S M+ ++ + + KVS L+D WNL+ L E+F
Sbjct: 878 IGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHM-KVSHLIDPLTRNWNLKKLTELFHEK 936
Query: 302 PMQKIL-AIPLSNQGNTDALYWYDTFNGVYVCKSGYK 337
+Q I+ PL + + D+ W T NG+Y KSGY+
Sbjct: 937 DVQLIMHQRPLIS--SEDSYCWAGTNNGLYTVKSGYE 971
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 159 bits (402), Expect = 2e-39
Identities = 101/296 (34%), Positives = 153/296 (51%), Gaps = 20/296 (6%)
Query: 69 YLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFI 128
YLGLP SK +++K+R+ K++ GW+ LS G+EIL+K++A A+P+Y MSCF
Sbjct: 750 YLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFK 809
Query: 129 LPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAKN 188
+P +IC I+ ++A F+W RGLHW W +L + K GGLGF+ AF AL+ K
Sbjct: 810 IPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQ 869
Query: 189 **RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKIEGGGGGLRWRV 245
R+ +SLM +VFK Y S L A G W SI +A I+ G+R +
Sbjct: 870 LWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIK---QGIRAVI 926
Query: 246 GDGFQINLLQDKWLPDGSSLVYMHEAI---------AELRLEKVSDLL--DNGRWNLELL 294
G+G IN+ D W+ G+ +A+ A + V DLL D WN L+
Sbjct: 927 GNGETINVWTDPWI--GAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLV 984
Query: 295 EEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREEHRP 350
+F + + ILA+ + D W + +G Y KSGY ++ ++ + + P
Sbjct: 985 SLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGY-WVMTEIINQRNNP 1039
>At3g45550 putative protein
Length = 851
Score = 159 bits (401), Expect = 3e-39
Identities = 102/288 (35%), Positives = 145/288 (49%), Gaps = 8/288 (2%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
L LL + KYLGLP G+ K ++FN++ +R+ +R W K LS AG+EIL+K
Sbjct: 356 LKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLK 415
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
S+A A+P Y MSCF LP I ++I+ ++ F+W +RG+ W W L +K++GGLG
Sbjct: 416 SVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLG 475
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAK---KGYITWSSILKA 230
FR F +AL+AK RI +P SL RV K Y +SI+ AK + WSS+L
Sbjct: 476 FRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLSG 535
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSL-VYMHEAIAELRLEKVSDLLDNGR- 288
+ G R+ +GDG I L D + + E L L+ + + R
Sbjct: 536 IALLR---KGTRYVIGDGKTIRLGIDNVVDSHPPRPLLTDEQHNGLSLDNLFQHRGHSRC 592
Query: 289 WNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
W+ L+ S I I LS + TD L W G Y +SGY
Sbjct: 593 WDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGY 640
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 154 bits (388), Expect = 1e-37
Identities = 100/299 (33%), Positives = 153/299 (50%), Gaps = 28/299 (9%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
L +LL + V+ KYLGLP +G+ K ++F ++ ++ +R +GW LS AG+EI+IK
Sbjct: 1097 LHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIK 1156
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
+IA A+P Y M+CF+LP IC +I+ +I F+WG + +G LG
Sbjct: 1157 AIAMALPVYSMNCFLLPTLICNEINSLITAFWWG------------------KENEGDLG 1198
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKA 230
F+ F AL+AK RI P+SL+ R++K +Y P+++ L A KG W+SI +
Sbjct: 1199 FKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEG 1258
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLDNGR-- 288
++ GLR R+GDG + +D WLP + E KV+DL +
Sbjct: 1259 KLLLQ---QGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDEDM--KVADLWRENKRE 1313
Query: 289 WNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREE 347
W+ + E V + Q ++ LSN D+ W T N Y +SGY + L EE
Sbjct: 1314 WDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEE 1372
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 149 bits (377), Expect = 2e-36
Identities = 97/293 (33%), Positives = 143/293 (48%), Gaps = 16/293 (5%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
+L Q+LE+ KYLGLP G+ K ++F ++ +R+ KR W + LS AG+EI++
Sbjct: 890 KLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIML 949
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
KS+A A+P Y MSCF LP I ++I+ ++ F+W +RG+ W W L +K++GGL
Sbjct: 950 KSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGL 1009
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMA---KKGYITWSSILK 229
GFR F +AL+AK R+ +P SL RV K Y SIL A K+ W+S+L
Sbjct: 1010 GFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLD 1069
Query: 230 AGGKIEGGGGGLRWRVGDGFQINLLQDKWL------PDGSSLVYMHEAIAELRLEKVSDL 283
++ G R +GDG I + D + P + Y I L K S
Sbjct: 1070 GIALLK---KGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYY 1126
Query: 284 LDNGRWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
W+ + + S I I L+ D + W G Y +SGY
Sbjct: 1127 F----WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY 1175
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 149 bits (376), Expect = 3e-36
Identities = 97/292 (33%), Positives = 142/292 (48%), Gaps = 16/292 (5%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
L Q+LE+ KYLGLP G+ K ++F ++ +R+ KR W + LS AG+EI++K
Sbjct: 1117 LKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLK 1176
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
S+A A+P Y MSCF LP I ++I+ ++ F+W +RG+ W W L +K++GGLG
Sbjct: 1177 SVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLG 1236
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMA---KKGYITWSSILKA 230
FR F +AL+AK R+ +P SL RV K Y SIL A K+ W+S+L
Sbjct: 1237 FRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDG 1296
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWL------PDGSSLVYMHEAIAELRLEKVSDLL 284
++ G R +GDG I + D + P + Y I L K S
Sbjct: 1297 IALLK---KGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYF 1353
Query: 285 DNGRWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
W+ + + S I I L+ D + W G Y +SGY
Sbjct: 1354 ----WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY 1401
>At1g24640 hypothetical protein
Length = 1270
Score = 149 bits (376), Expect = 3e-36
Identities = 94/275 (34%), Positives = 150/275 (54%), Gaps = 13/275 (4%)
Query: 69 YLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFI 128
YLGLP SK + +++K+R+ ++L W + LS+ G+E+L+KS+A A+P + MSCF
Sbjct: 713 YLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFK 772
Query: 129 LPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAKN 188
LP + C +++ +A F+W R +HW W LC K GGLGFR ++F +AL+AK
Sbjct: 773 LPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQ 832
Query: 189 **RIYMFPESLMGRVFKVVYSPSSSIL---MAKKGYITWSSILKAGGKIEGGGGGLRWRV 245
R+ FP+ L+ R+ K Y ++ L ++++ W SIL + GL+ RV
Sbjct: 833 AWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELL---SKGLQKRV 889
Query: 246 GDGFQINLLQDKWLPD-GSSLVYMHEAIAELRLEKVSDLLD--NGRWNLELLEEVFSSSP 302
GDG + + D W+ D G + I ++ L KV LL+ G W+ E+L ++F
Sbjct: 890 GDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTL-KVKALLNPRTGFWDEEVLHDLFLPED 948
Query: 303 MQKILAI-PLSNQGNTDALYWYDTFNGVYVCKSGY 336
+ +I AI P+ +Q D W +G + KS Y
Sbjct: 949 ILRIKAIKPVISQ--ADFFVWKLNKSGDFSVKSAY 981
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 148 bits (374), Expect = 4e-36
Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 15/290 (5%)
Query: 68 KYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCF 127
KYLGLP SK +F F+KE++ RL GW K+LS+ G++IL+KSIA A P Y M+CF
Sbjct: 478 KYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCF 537
Query: 128 ILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAK 187
L ++C + ++ F+W ++ +HW L K GG GF+ + F +AL+AK
Sbjct: 538 RLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAK 597
Query: 188 N**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKIEGGGGGLRWR 244
R++ +SL+ ++ K Y +S L A KG W SIL + GL+
Sbjct: 598 QASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLV---SGLKKI 654
Query: 245 VGDGFQINLLQDKWL-PDGSSLVYMHEAIAELRLEKVSDLLD--NGRWNLELLEEVFSSS 301
+G+G + D W+ D + + +++L KVS L+D + WNL +L ++F
Sbjct: 655 IGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQL-KVSQLIDPFSRNWNLNMLRDLFPWK 713
Query: 302 PMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREEHRPL 351
+Q I+ D+ W+ T +G+Y KS Y D+ R+ H+ +
Sbjct: 714 EIQ-IICQQRPMASRQDSFCWFGTNHGLYTVKSEY----DLCSRQVHKQM 758
>At3g31420 hypothetical protein
Length = 1491
Score = 146 bits (368), Expect = 2e-35
Identities = 88/286 (30%), Positives = 138/286 (47%), Gaps = 38/286 (13%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
+ LL + KYLGLP K K ++FN++ E++ + +GW +K LS+ G+E+L+K
Sbjct: 893 MRHLLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEKVKDKTQGWSKKFLSQGGKEVLLK 952
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
++A A+P Y M+ F L +C +ID ++A F+W +G+HW W + K++GGLG
Sbjct: 953 AVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGNETKGMHWFTWKRMSIPKKEGGLG 1012
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKA 230
F+ F AL+ K + P LM RV + Y P ++++ A +G W SIL
Sbjct: 1013 FKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQGRRASFVWKSILHG 1072
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLDNGRWN 290
++ GLR VGDG IN D WLP +H A + E
Sbjct: 1073 RNLLK---KGLRCCVGDGSLINAWLDPWLP-------LHSPRAPYKQE------------ 1110
Query: 291 LELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
+P Q ++ + D + W+ T +G+Y KS Y
Sbjct: 1111 ---------DAPEQLLVC----STARDDLIGWHYTKDGMYTVKSAY 1143
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 140 bits (352), Expect = 2e-33
Identities = 86/289 (29%), Positives = 148/289 (50%), Gaps = 9/289 (3%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
++ ++L++++ KYLGLP G+ K IF + ++I ++ W + LS+AG+++++
Sbjct: 629 QVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVML 688
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
K++ ++P Y MSCF LP ++C I ++ F+W R W W+ L K GGL
Sbjct: 689 KAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGL 748
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAK---KGYITWSSILK 229
GFR ++L+AK R+ PESL+ R+ Y SSS + K + W SI+
Sbjct: 749 GFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSII- 807
Query: 230 AGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLDNG-- 287
AG +I GL W + +G ++++ D WL LV + A+ E + +VS L++
Sbjct: 808 AGREIL--KEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTL 865
Query: 288 RWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
+W+ + + + I +P + D L W +G Y +SGY
Sbjct: 866 QWDWNKIAVILPNYE-NLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGY 913
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 139 bits (350), Expect = 3e-33
Identities = 96/304 (31%), Positives = 146/304 (47%), Gaps = 14/304 (4%)
Query: 49 NCFHELTQLLEVKE----VKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLS 104
N E+ QL+ + K KYLG+P + + + F V ER+ RL GWK +SLS
Sbjct: 589 NVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLS 648
Query: 105 RAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLC 164
AGR L K++ +IP ++MS +LP S +DR F WG + ++ H W +C
Sbjct: 649 LAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKIC 708
Query: 165 KNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVY-----SPSSSILMAKK 219
K K +GG+G R R +ALVAK R+ ESL RV + Y +S + +
Sbjct: 709 KPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPR 768
Query: 220 GYITWSSILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAE-LRLE 278
TW S+ A G E G+ W GDG I D+WL + + I E R++
Sbjct: 769 WSSTWRSV--AVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPEGERIK 826
Query: 279 KVSDL-LDNGRWNLELLEEVFSSSPMQKILAIPLS-NQGNTDALYWYDTFNGVYVCKSGY 336
+D L WNLE+L + +++L++ + GN D + W T +G + +S Y
Sbjct: 827 VAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAY 886
Query: 337 KFIR 340
++
Sbjct: 887 SLLQ 890
>At4g10830 putative protein
Length = 1294
Score = 137 bits (346), Expect = 8e-33
Identities = 77/200 (38%), Positives = 114/200 (56%), Gaps = 6/200 (3%)
Query: 52 HELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREIL 111
+ L +L ++ KYLGLP G+ K +FN++ ER+ KR W K LS AG+EI+
Sbjct: 1095 NRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIM 1154
Query: 112 IKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGG 171
+KS+A ++P Y MSCF LP +I ++I+ ++ F+W + +R + W W L +K++GG
Sbjct: 1155 LKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGG 1214
Query: 172 LGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYIT---WSSIL 228
LGFR F +AL+AK R+ P SL R+ K Y SIL AK+ W+S+L
Sbjct: 1215 LGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSML 1274
Query: 229 KAGGKIEGGGGGLRWRVGDG 248
I+ G R+ VGDG
Sbjct: 1275 AGLDVIKKGS---RFIVGDG 1291
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 134 bits (338), Expect = 6e-32
Identities = 85/257 (33%), Positives = 128/257 (49%), Gaps = 5/257 (1%)
Query: 83 IFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIA 142
I +++K+++ RL GW ++LS G+EIL+K++A A+ Y MSCF L + C ++ ++
Sbjct: 540 ILDYIKDKLKSRLSGWFARTLSLGGKEILLKAVAMAMQVYAMSCFKLTKTTCKNLTSAMS 599
Query: 143 CFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGR 202
F+W +R HW W LC K GGLGFR +F +AL+AK RI +P L R
Sbjct: 600 DFWWNALEHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFAR 659
Query: 203 VFKVVYSPSSSILMAKKGYITWSSILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDG 262
FK Y L A G + E GLR VG+G +N+ D W+ D
Sbjct: 660 FFKSRYFDDEEFLEADLGVRPSYACCSILFGRELLAKGLRKEVGNGKSLNVWMDPWIFDI 719
Query: 263 SSLVYMHEAIAELRLEKVSDLL--DNGRWNLELLEEVFSSSPMQKIL-AIPLSNQGNTDA 319
+ + + + KV+DL+ ++ W +LLEE+F + ++ I P+ N D
Sbjct: 720 APRLPLQRHFSVNLDLKVNDLINFEDRCWKRDLLEELFYPTDVELITKRNPVVNM--DDF 777
Query: 320 LYWYDTFNGVYVCKSGY 336
W G Y KSGY
Sbjct: 778 WVWLHAKTGEYSVKSGY 794
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 128 bits (322), Expect = 5e-30
Identities = 91/289 (31%), Positives = 132/289 (45%), Gaps = 25/289 (8%)
Query: 58 LEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQ 117
L + KYLGLP G+ K IF+ + +RI +R W + LS AG++IL+K++
Sbjct: 680 LRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLS 739
Query: 118 AIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFF 177
++PSY M CF LP S+C I ++ F+W +R + W W L +GGLGFR
Sbjct: 740 SMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFR-- 797
Query: 178 RAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSIL--MAKKGYIT--WSSILKAGGK 233
+ AK RI P SL+ RV Y +SS + A + + W IL
Sbjct: 798 -----EIEAKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDL 852
Query: 234 IEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLL--DNGRWNL 291
+ GL W +G G IN+ + WL S + + V DL+ D WN+
Sbjct: 853 LR---KGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNV 909
Query: 292 ELLEEVFSSSPMQ----KILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
E + + Q I A+PL D+L W +G Y K+GY
Sbjct: 910 EAIRKHLPQYEDQIRKITINALPLQ-----DSLVWLPVKSGEYTTKTGY 953
>At4g08830 putative protein
Length = 947
Score = 127 bits (318), Expect = 1e-29
Identities = 94/315 (29%), Positives = 143/315 (44%), Gaps = 39/315 (12%)
Query: 48 ENCFHELTQLLE----VKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSL 103
+N +L +L+ +K + KYLG+P + + F V ER+ RL GWK +SL
Sbjct: 402 KNVSRDLEKLISKESGIKSTRELGKYLGMPILQRRINKDTFGEVLERVSSRLAGWKGRSL 461
Query: 104 SRAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANL 163
S AGR L KS+ IP + MS LP S +D++ F G ++ LH W +
Sbjct: 462 SFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSAEKKKLHLVAWDRV 521
Query: 164 CKNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYIT 223
C K +GGLG R + +ALV+K R+ SL R+ + Y ++++
Sbjct: 522 CLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKYRVGLREVVSR----- 576
Query: 224 WSSILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAEL----RLEK 279
G RW VG+G I D WL S ++ A+ E+ + +
Sbjct: 577 ----------------GSRWVVGNGRDILFWSDNWL---SHEALINRAVIEIPNSEKELR 617
Query: 280 VSDLLDNG-RWNLELLEEVFSSSPMQKILAIPL-SNQGNTDALYWYDTFNGVYVCKSGYK 337
V DL NG W L+ +E S ++ A+ + S G D L W + +GV+ KS Y+
Sbjct: 618 VKDLWANGLGWKLDKIEPYISYHTRLELAAVVVDSVTGARDRLSWGYSADGVFTVKSAYR 677
Query: 338 FIRDMMLREEHRPLP 352
+L E+H P P
Sbjct: 678 -----LLTEDHDPRP 687
>At2g11240 pseudogene
Length = 1044
Score = 125 bits (315), Expect = 3e-29
Identities = 79/267 (29%), Positives = 131/267 (48%), Gaps = 25/267 (9%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
E Q+L ++ V KYLGLP + G+ K +FN + +RI +R W + LS AG+ ++
Sbjct: 560 EAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTML 619
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
KS+ ++P+Y MSCF L S+C I + F+W ++ + W W+ + KNK++GGL
Sbjct: 620 KSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGL 679
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAK---------KGYIT 223
GF+ F +AL+AK RI P ++ R+ Y +SS L +G T
Sbjct: 680 GFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICT 739
Query: 224 WSSILKAG-GKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSD 282
++K+ GK+ +G G + + WL +S M A+ + + V+
Sbjct: 740 GKDLIKSQLGKV----------IGSGLDTLVWNEPWLSLSTSSTPMGPALEQFKSMTVAQ 789
Query: 283 LL--DNGRWNLELLEEVFSSSPMQKIL 307
L+ W+ E+V+ SP + L
Sbjct: 790 LICQTTKSWD---REKVWDLSPFKTTL 813
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 121 bits (304), Expect = 6e-28
Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 15/313 (4%)
Query: 48 ENCFHELTQLLE----VKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSL 103
EN +L +L+ + + KYLG+P + + F + E++ RL GWK + L
Sbjct: 250 ENVSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFL 309
Query: 104 SRAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANL 163
S AGR L K++ +IP + MS LP S +D++ F WG VT+R H W +
Sbjct: 310 SLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRV 369
Query: 164 CKNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVY-----SPSSSILMAK 218
CK + +GGLG R + +AL++K R+ SL R+ + Y + +
Sbjct: 370 CKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRS 429
Query: 219 KGYITWSSILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPD-GSSLVYMHEAIAELRL 277
TW S+ A G E GL W +GDG +I DKWL + + + + E A +
Sbjct: 430 VCSSTWRSV--ALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLAELLVQEPPAGWKG 487
Query: 278 EKVSDLLDNG-RWNLELLEEVFSSSPMQKILAIPLSN-QGNTDALYWYDTFNGVYVCKSG 335
+ DL NG W++ + SS ++ + L + G D + W ++ +G + +
Sbjct: 488 MRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVSTT 547
Query: 336 YKFI-RDMMLREE 347
Y F+ RD R++
Sbjct: 548 YSFLTRDEAPRQD 560
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.334 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,781,441
Number of Sequences: 26719
Number of extensions: 384549
Number of successful extensions: 1679
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 86
length of query: 388
length of database: 11,318,596
effective HSP length: 101
effective length of query: 287
effective length of database: 8,619,977
effective search space: 2473933399
effective search space used: 2473933399
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0023.9