BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.8
(85 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60800 unknown protein 27 2.3
At1g03370 unknown protein 27 2.3
At5g36870 putative glucan synthase 26 3.1
At5g18880 SAE1-S9-protein - like 25 5.2
At5g13000 callose synthase catalytic subunit -like protein 25 5.2
At1g05570 putative glucan synthase 25 5.2
At3g05400 sugar transporter like protein 25 6.8
At2g31960 glucan synthase like protein 25 6.8
At5g65110 acyl-CoA oxidase (gb|AAC13497.1) 25 8.9
>At3g60800 unknown protein
Length = 307
Score = 26.6 bits (57), Expect = 2.3
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 11 FFFCNFI-GLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTLLLDLMFSM 69
F FC + GL ++ +LL +G+ V + + VL +G +L LT+L+ F +
Sbjct: 13 FKFCTALRGLGSIMILLVLGVVGVTYYAVVLTNYGPALSQGGLD-SLAALTILILFHFLL 71
Query: 70 LQFGYTLFLLVFTDFG 85
++ F +VFTD G
Sbjct: 72 AMLLWSYFSVVFTDPG 87
>At1g03370 unknown protein
Length = 1859
Score = 26.6 bits (57), Expect = 2.3
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 8/55 (14%)
Query: 29 GIGDVAWLSFVLQLKTKEEIRGRRGMNLHL--------LTLLLDLMFSMLQFGYT 75
G G V +S LQ++ E + HL LTL LD M ++ GYT
Sbjct: 68 GNGSVGEVSNQLQVEVSESVEWDDPFACHLEELLSSNLLTLFLDTMKQLIDLGYT 122
>At5g36870 putative glucan synthase
Length = 1662
Score = 26.2 bits (56), Expect = 3.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTLL 62
+ MG LL I I +AW F+ + +T+ LH+ +L
Sbjct: 1607 LVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRIL 1649
>At5g18880 SAE1-S9-protein - like
Length = 295
Score = 25.4 bits (54), Expect = 5.2
Identities = 10/24 (41%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Query: 33 VAWLSFVLQLKTKEEIRGRRGMNL 56
+ W+SF+ +L T++ +RG GMN+
Sbjct: 143 ITWMSFLERLPTRDRLRG-WGMNI 165
>At5g13000 callose synthase catalytic subunit -like protein
Length = 1963
Score = 25.4 bits (54), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL + +AW FV + +T+
Sbjct: 1908 IVMGLLLFTPVAFLAWFPFVSEFQTR 1933
>At1g05570 putative glucan synthase
Length = 1858
Score = 25.4 bits (54), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL + +AW FV + +T+
Sbjct: 1803 IVMGLLLFTPVAFLAWFPFVSEFQTR 1828
>At3g05400 sugar transporter like protein
Length = 462
Score = 25.0 bits (53), Expect = 6.8
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 13 FCNFIGLITMGLLLRIGIGDVAWL 36
FC FIG+++ ++ IG+G + W+
Sbjct: 359 FC-FIGILSFTMMFAIGMGALPWI 381
>At2g31960 glucan synthase like protein
Length = 1956
Score = 25.0 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL + +AW FV + +T+
Sbjct: 1901 ILMGLLLFTPVAFLAWFPFVSEFQTR 1926
>At5g65110 acyl-CoA oxidase (gb|AAC13497.1)
Length = 692
Score = 24.6 bits (52), Expect = 8.9
Identities = 11/37 (29%), Positives = 19/37 (50%)
Query: 10 YFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKE 46
YF +G + M L +++G+ W V+ L TK+
Sbjct: 129 YFAIMEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKK 165
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.343 0.159 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,723,414
Number of Sequences: 26719
Number of extensions: 56665
Number of successful extensions: 267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 9
length of query: 85
length of database: 11,318,596
effective HSP length: 61
effective length of query: 24
effective length of database: 9,688,737
effective search space: 232529688
effective search space used: 232529688
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0023.8