BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.3
(106 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15590 reverse transcriptase like protein 41 1e-04
At2g31080 putative non-LTR retroelement reverse transcriptase 39 3e-04
At2g07650 putative non-LTR retrolelement reverse transcriptase 39 3e-04
At2g17610 putative non-LTR retroelement reverse transcriptase 39 4e-04
At4g08830 putative protein 38 7e-04
At3g31420 hypothetical protein 38 0.001
At2g15510 putative non-LTR retroelement reverse transcriptase 37 0.001
At2g05200 putative non-LTR retroelement reverse transcriptase 37 0.001
At1g24640 hypothetical protein 37 0.002
At2g45230 putative non-LTR retroelement reverse transcriptase 37 0.002
At2g11240 pseudogene 37 0.002
At4g04000 putative reverse transcriptase 36 0.003
At2g17910 putative non-LTR retroelement reverse transcriptase 36 0.004
At1g19030 hypothetical protein 36 0.004
At3g32110 non-LTR reverse transcriptase, putative 35 0.006
At4g10830 putative protein 35 0.008
At1g47910 reverse transcriptase, putative 35 0.008
At2g31520 putative non-LTR retroelement reverse transcriptase 33 0.018
At2g25550 putative non-LTR retroelement reverse transcriptase 33 0.018
At3g45550 putative protein 33 0.024
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 40.8 bits (94), Expect = 1e-04
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC*RA--SI*KIH- 60
HL+ W+KV K GGL +R ++ N ALL K WR+ D+ + A R + +H
Sbjct: 635 HLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKVTDVHD 694
Query: 61 NSWSVKLKV---TCRTLGTSL 78
+SW V T R++G L
Sbjct: 695 SSWLVPKATWSSTWRSIGVGL 715
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 39.3 bits (90), Expect = 3e-04
Identities = 17/44 (38%), Positives = 26/44 (58%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
HL+ W K+ K GG+ +R R N AL+ K WR+ QD++ +
Sbjct: 700 HLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESL 743
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 39.3 bits (90), Expect = 3e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
HL+ W++V + GGL +R+ + N ALL K WR+ QD
Sbjct: 362 HLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQD 401
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 38.9 bits (89), Expect = 4e-04
Identities = 17/37 (45%), Positives = 23/37 (61%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
V W K+ + K GGL +R+ + NIALL K WR+ Q
Sbjct: 294 VAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQ 330
>At4g08830 putative protein
Length = 947
Score = 38.1 bits (87), Expect = 7e-04
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDR 44
HLV W++V K GGL +R ++ N AL+ K WR+ DR
Sbjct: 514 HLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDR 554
>At3g31420 hypothetical protein
Length = 1491
Score = 37.7 bits (86), Expect = 0.001
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
H W++++ K GGL +E N+ALLGK W + Q C+
Sbjct: 995 HWFTWKRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCL 1038
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 37.4 bits (85), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
H V WEK+ K+ GGL R+ N ALL K WR+ Q
Sbjct: 613 HWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQ 651
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 37.4 bits (85), Expect = 0.001
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 1 TCWHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
T W V W K+TN K+ GGL R+ + N +LL K WR+
Sbjct: 731 TSW--VAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRL 768
>At1g24640 hypothetical protein
Length = 1270
Score = 37.0 bits (84), Expect = 0.002
Identities = 17/44 (38%), Positives = 23/44 (51%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
H WE++ KD GGL R+ + N ALL K WR+ C+
Sbjct: 800 HWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCL 843
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 36.6 bits (83), Expect = 0.002
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AE 50
H W ++ K GGL +E NIALLGK +WRM ++ + A+
Sbjct: 837 HWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAK 883
>At2g11240 pseudogene
Length = 1044
Score = 36.6 bits (83), Expect = 0.002
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 2 CWHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
CW + W K+ K GGL ++ N ALL K WR+ Q C+
Sbjct: 663 CW--IAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCV 706
>At4g04000 putative reverse transcriptase
Length = 1077
Score = 36.2 bits (82), Expect = 0.003
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AE 50
+ W+K+T GGL R+ + N ALL K WR+ Q+ C+ A+
Sbjct: 774 ISWQKMTLSFKSGGLGFRDVQTFNKALLAKLSWRLLQNPSCLLAK 818
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 35.8 bits (81), Expect = 0.004
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDR 44
H + W+++T KD GG ++ + N ALL K WR+ Q++
Sbjct: 815 HWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEK 855
>At1g19030 hypothetical protein
Length = 398
Score = 35.8 bits (81), Expect = 0.004
Identities = 19/66 (28%), Positives = 32/66 (47%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC*RASI*KIHNSWSV 65
V W +V + K GGL +R + N + K +WR+ R+ + E + + + + W V
Sbjct: 89 VAWSEVCSPKQEGGLGLRSIAEANKVCVLKLIWRILSARRSLWVELVKKYLIRRGSFWLV 148
Query: 66 KLKVTC 71
K TC
Sbjct: 149 KENTTC 154
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 35.0 bits (79), Expect = 0.006
Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 6/81 (7%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC*RA--SI*KIHN 61
HLV W +V + GGL +R N AL+ K WR+ D + A+ R+ + +H+
Sbjct: 1376 HLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHD 1435
Query: 62 -SWSV---KLKVTCRTLGTSL 78
+W+V T R++G L
Sbjct: 1436 RNWTVAKSNWSSTWRSVGVGL 1456
>At4g10830 putative protein
Length = 1294
Score = 34.7 bits (78), Expect = 0.008
Identities = 16/35 (45%), Positives = 21/35 (59%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
+ W+++ K GGL R+ K N ALL K VWRM
Sbjct: 1201 IAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRM 1235
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 34.7 bits (78), Expect = 0.008
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
H + W+K+ + K GGL R N ALL K +WR+
Sbjct: 621 HWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRL 657
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 33.5 bits (75), Expect = 0.018
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
V W+++ K GGL R+ K N ALL K WR+ Q
Sbjct: 995 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQ 1031
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 33.5 bits (75), Expect = 0.018
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
V W+++ K GGL R+ K N ALL K WR+ Q
Sbjct: 1221 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQ 1257
>At3g45550 putative protein
Length = 851
Score = 33.1 bits (74), Expect = 0.024
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
V W+++ K GGL R+ K N ALL K WR+ Q
Sbjct: 460 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQ 496
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.341 0.146 0.527
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,147,792
Number of Sequences: 26719
Number of extensions: 64632
Number of successful extensions: 180
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 38
length of query: 106
length of database: 11,318,596
effective HSP length: 82
effective length of query: 24
effective length of database: 9,127,638
effective search space: 219063312
effective search space used: 219063312
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0023.3